BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020223
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IEI|A Chain A, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|B Chain B, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|C Chain C, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|D Chain D, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|E Chain E, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|F Chain F, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|G Chain G, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|H Chain H, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3P71|T Chain T, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 334
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 165/307 (53%), Gaps = 12/307 (3%)
Query: 11 NKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLL 69
N V+ T +DAS K V GY D YI FVR R++P INRGYFAR + +L+
Sbjct: 22 NDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLI 81
Query: 70 YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI 129
FL +CH QI++LGAG DTT+++L+ E Y E+DF + ++K I
Sbjct: 82 KAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSI 134
Query: 130 ETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
+ L + S Q G +L Y ++ DLRD+ L E + NM+ LPT
Sbjct: 135 KCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTL 194
Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246
+IAECVL+Y+ P+ S ++ WA+ +F A+F YEQ++ D FGQ MI NL R C L G
Sbjct: 195 LIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAG 254
Query: 247 INATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQE 306
+ +L ++++ L GW+ A A DM+ +Y+ E RIE LE DE E +
Sbjct: 255 VETCKSLESQKERLLSNGWETASAVDMMELYNRLPRA-EVSRIESLEFLDEMELLEQLMR 313
Query: 307 HYCVAHA 313
HYC+ A
Sbjct: 314 HYCLCWA 320
>pdb|3O7W|A Chain A, The Crystal Structure Of Human Leucine Carboxyl
Methyltransferase 1
Length = 294
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 157/307 (51%), Gaps = 36/307 (11%)
Query: 11 NKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLL 69
N V+ T +DAS K V GY D YI FVR R++P INRGYFAR + +L+
Sbjct: 6 NDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLI 65
Query: 70 YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI 129
FL +CH QI++LGAG DTT+++L+ E P Y E+DF + ++K I
Sbjct: 66 KAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSI 118
Query: 130 ETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
+ L + S Q G +L Y ++ DLRD+ L E + NM+ LPT
Sbjct: 119 KCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTL 178
Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246
+IAECVL+Y+ P+ S ++ WA+ +F A+F YEQ++ ++LES+
Sbjct: 179 LIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNEG--------KSLESQ------ 224
Query: 247 INATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQE 306
KE+L L GW+ A A DM+ +Y+ E RIE LE DE E +
Sbjct: 225 ---------KERL-LSNGWETASAVDMMELYNRLPRA-EVSRIESLEFLDEMELLEQLMR 273
Query: 307 HYCVAHA 313
HYC+ A
Sbjct: 274 HYCLCWA 280
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 159/336 (47%), Gaps = 45/336 (13%)
Query: 14 AVQATNDDASASKLSC---------------VKKGYMKDDYIHLFVRRPVRRSPIINRGY 58
A+Q TN+ + ASK S + K +Y FV + ++RSP INRGY
Sbjct: 26 AIQGTNNSSIASKRSVELLYLPKLSSANNFQMDKNNKLLEYFKFFVPKKIKRSPCINRGY 85
Query: 59 FARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQL----QAEGKAPH--- 111
+ R A+R L ++ + DKK +++LG G+D FQL + + H
Sbjct: 86 WLRLFAIRSRLNSIIE-QTPQDKKI----VVVNLGCGYDPLPFQLLDTNNIQSQQYHDRV 140
Query: 112 LYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLL--------PVD 163
++++D+ ++ K LI+T EL +G +S+ K V N L P D
Sbjct: 141 SFIDIDYSDLLKIKIELIKTIPELSKIIG----LSEDKDYVDDSNVDFLTTPKYLARPCD 196
Query: 164 LRDIQMLNEVINLANM-DPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ 222
L D +M + ++N + DP++ +AE L Y+ P+ S +I+ SK + F + EQ
Sbjct: 197 LNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-MENSHFIILEQ 255
Query: 223 IHPD---DAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279
+ P + F +QM+ + + L + T+ ++ + F G+ DM +++ +
Sbjct: 256 LIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQLWES 315
Query: 280 FINPQERRRIERLELFDEFEEWHMMQEHYCVAHAIN 315
+ ++ + ++E FDE EE+H+ HY + HA N
Sbjct: 316 -ADEATKKELLKVEPFDELEEFHLFCHHYVLCHATN 350
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 34/284 (11%)
Query: 44 VRRPVRRS-PIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
V + +R S P++N G + R + + +FL + K Q+++LG G D
Sbjct: 63 VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 114
Query: 103 LQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN--YKL 159
L PHL YV++D+ E K +++ L+ +G++ AK L D YKL
Sbjct: 115 LLQ--MFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKE-DTAKSPFLIDQGRYKL 171
Query: 160 LPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219
DL DI ++++ +PT +I+EC+L Y+ + S+ ++ FS ++
Sbjct: 172 AACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWIS 230
Query: 220 YEQI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLL---AKEKLFLDQGWQQA---V 269
Y+ I P+D FG M NL ESR + PTL+ +KEK W A +
Sbjct: 231 YDPIGGSQPNDRFGAIMQSNLKESRNLEM------PTLMTYNSKEKY--ASRWSAAPNVI 282
Query: 270 AWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHA 313
DM +++ I ER+R+ L+ DE EE +MQ HY + A
Sbjct: 283 VNDMWEIFNAQIPESERKRLRSLQFLDELEELKVMQTHYILMKA 326
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 34/284 (11%)
Query: 44 VRRPVRRS-PIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
V + +R S P++N G + R + + +FL + K Q+++LG G D
Sbjct: 54 VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 105
Query: 103 LQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN--YKL 159
L PHL YV++D+ E K +++ L+ +G++ AK L D YKL
Sbjct: 106 LLQ--MFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKE-DTAKSPFLIDQGRYKL 162
Query: 160 LPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219
DL DI ++++ +PT +I+EC+L Y+ + S+ ++ FS ++
Sbjct: 163 AACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWIS 221
Query: 220 YEQI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLL---AKEKLFLDQGWQQA---V 269
Y+ I P+D FG M NL ESR + PTL+ +KEK W A +
Sbjct: 222 YDPIGGSQPNDRFGAIMQSNLKESRNLEM------PTLMTYNSKEKY--ASRWSAAPNVI 273
Query: 270 AWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHA 313
DM +++ I ER+R+ L+ DE EE +MQ HY + A
Sbjct: 274 VNDMWEIFNAQIPESERKRLRSLQFLDELEELKVMQTHYILMKA 317
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 34/284 (11%)
Query: 44 VRRPVRRS-PIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
V + +R S P++N G + R + + +FL + K Q+++LG G D
Sbjct: 62 VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 113
Query: 103 LQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN--YKL 159
L PHL YV++D+ E K +++ L+ +G++ AK L D YKL
Sbjct: 114 LLQ--MFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKE-DTAKSPFLIDQGRYKL 170
Query: 160 LPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219
DL DI ++++ +PT +I+E +L Y+ + S+ ++ FS ++
Sbjct: 171 AACDLNDITETTRLLDVCT-KREIPTIVISEXLLCYMHNNESQLLINTIMSKFSHGLWIS 229
Query: 220 YEQI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLL---AKEKLFLDQGWQQA---V 269
Y+ I P+D FG M NL ESR + PTL+ +KEK W A +
Sbjct: 230 YDPIGGSQPNDRFGAIMQSNLKESRNLEM------PTLMTYNSKEKY--ASRWSAAPNVI 281
Query: 270 AWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHA 313
DM +++ I ER+R+ L+ DE EE +MQ HY + A
Sbjct: 282 VNDMWEIFNAQIPESERKRLRSLQFLDELEELKVMQTHYILMKA 325
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQDEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQDEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2CKD|B Chain B, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2UYO|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
An Hexagonal Crystal Form
pdb|2UYQ|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
Complex With S-Adenosylmethionine
Length = 310
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASIS 146
+Q + L +G D+ ++L + E+D +V + K+ + HG V TA
Sbjct: 104 RQFVILASGLDSRAYRL--DWPTGTTVYEIDQPKVLAYKSTTLAEHG-----VTPTA--- 153
Query: 147 QAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYL 196
+ + +P+DLR Q + A DPS T +AE +L+YL
Sbjct: 154 ---------DRREVPIDLR--QDWPPALRSAGFDPSARTAWLAEGLLMYL 192
>pdb|1N26|A Chain A, Crystal Structure Of The Extra-Cellular Domains Of Human
Interleukin-6 Receptor Alpha Chain
Length = 325
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 227 DAFGQQMIRNLESRGCALL----GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFIN 282
+ G + + +GC +L N T T +A+ +L WQ +W+ S+F
Sbjct: 177 SSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWN-----SSFY- 230
Query: 283 PQERRRIE---RLELFDEFEEWHMMQ-EHYCVAH 312
R R E R E F W + +H+CV H
Sbjct: 231 ---RLRFELRYRAERSKTFTTWMVKDLQHHCVIH 261
>pdb|2EC2|A Chain A, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|B Chain B, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|C Chain C, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|D Chain D, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|E Chain E, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|F Chain F, Crystal Structure Of Transposase From Sulfolobus Tokodaii
Length = 136
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 38 DYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFD 97
D+IHLFV P R +P YF +A R +L +F + + K T+ +S
Sbjct: 59 DHIHLFVNCPPRYAPSYLANYFKGKSA-RLILKKFQELKKSTNGKLWTRSYFVSTSGNVS 117
Query: 98 T 98
+
Sbjct: 118 S 118
>pdb|1P9M|C Chain C, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 201
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 227 DAFGQQMIRNLESRGCALL----GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFIN 282
+ G + + +GC +L N T T +A+ +L WQ +W+ S+F
Sbjct: 82 SSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWN-----SSFY- 135
Query: 283 PQERRRIE---RLELFDEFEEWHMMQ-EHYCVAH 312
R R E R E F W + +H+CV H
Sbjct: 136 ---RLRFELRYRAERSKTFTTWMVKDLQHHCVIH 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,809,683
Number of Sequences: 62578
Number of extensions: 395574
Number of successful extensions: 792
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 18
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)