Query 020223
Match_columns 329
No_of_seqs 199 out of 1319
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2918 Carboxymethyl transfer 100.0 2.1E-86 4.5E-91 609.9 27.2 311 7-326 15-330 (335)
2 TIGR00027 mthyl_TIGR00027 meth 100.0 2.4E-39 5.2E-44 300.5 23.2 231 17-281 2-258 (260)
3 COG3315 O-Methyltransferase in 100.0 5.2E-37 1.1E-41 289.2 20.7 240 9-280 8-272 (297)
4 PF04072 LCM: Leucine carboxyl 100.0 7E-38 1.5E-42 276.5 10.6 166 15-209 2-183 (183)
5 PF04672 Methyltransf_19: S-ad 98.5 1.4E-06 2.9E-11 81.0 11.3 157 86-269 69-233 (267)
6 TIGR00740 methyltransferase, p 97.9 0.00072 1.6E-08 61.8 16.8 152 87-269 55-224 (239)
7 TIGR02716 C20_methyl_CrtF C-20 97.7 0.0028 6.2E-08 60.1 17.5 152 86-270 150-304 (306)
8 PTZ00098 phosphoethanolamine N 97.6 0.0058 1.3E-07 57.0 18.0 155 87-281 54-211 (263)
9 PRK15451 tRNA cmo(5)U34 methyl 97.3 0.015 3.3E-07 53.5 16.5 152 87-269 58-227 (247)
10 PRK11036 putative S-adenosyl-L 97.0 0.02 4.3E-07 52.9 13.5 175 60-274 25-209 (255)
11 PF12147 Methyltransf_20: Puta 96.8 0.14 3E-06 48.4 17.2 180 56-268 110-294 (311)
12 TIGR02752 MenG_heptapren 2-hep 96.4 0.24 5.1E-06 44.6 16.4 153 87-271 47-217 (231)
13 PRK15068 tRNA mo(5)U34 methylt 96.4 0.12 2.6E-06 49.7 15.2 152 87-275 124-277 (322)
14 PF00891 Methyltransf_2: O-met 96.2 0.033 7.1E-07 50.8 9.7 101 86-226 101-204 (241)
15 PLN02244 tocopherol O-methyltr 96.2 0.48 1E-05 45.8 17.9 155 86-276 119-282 (340)
16 PLN02490 MPBQ/MSBQ methyltrans 96.2 0.28 6E-06 47.6 16.0 146 87-277 115-261 (340)
17 PLN02233 ubiquinone biosynthes 96.1 0.59 1.3E-05 43.4 17.7 157 87-272 75-248 (261)
18 PF01209 Ubie_methyltran: ubiE 96.1 0.13 2.8E-06 47.2 12.7 153 87-271 49-219 (233)
19 TIGR00452 methyltransferase, p 96.1 0.25 5.5E-06 47.4 15.0 152 87-275 123-276 (314)
20 PLN02336 phosphoethanolamine N 95.9 0.27 5.8E-06 49.6 15.1 154 87-281 268-423 (475)
21 TIGR02021 BchM-ChlM magnesium 95.6 0.54 1.2E-05 42.1 14.6 148 86-270 56-204 (219)
22 PRK07580 Mg-protoporphyrin IX 95.6 0.86 1.9E-05 40.8 15.8 150 86-272 64-214 (230)
23 PLN03075 nicotianamine synthas 95.0 0.3 6.4E-06 46.5 11.1 155 33-221 76-232 (296)
24 PLN02585 magnesium protoporphy 94.7 3.5 7.6E-05 39.6 17.9 145 87-269 146-296 (315)
25 TIGR03587 Pse_Me-ase pseudamin 94.4 1.3 2.9E-05 39.5 13.4 103 86-225 44-146 (204)
26 PF06080 DUF938: Protein of un 94.3 1.2 2.5E-05 40.1 12.6 175 65-274 14-194 (204)
27 smart00828 PKS_MT Methyltransf 94.3 1.7 3.7E-05 38.8 14.0 172 88-304 2-184 (224)
28 TIGR01934 MenG_MenH_UbiE ubiqu 94.2 3.7 8.1E-05 36.1 17.2 154 86-273 40-211 (223)
29 PF03848 TehB: Tellurite resis 93.7 0.89 1.9E-05 40.5 10.7 136 86-269 31-166 (192)
30 PF13489 Methyltransf_23: Meth 93.2 3.4 7.4E-05 34.2 13.2 150 64-269 8-160 (161)
31 PLN02396 hexaprenyldihydroxybe 92.9 5.8 0.00013 38.2 15.7 179 60-273 107-290 (322)
32 TIGR03438 probable methyltrans 92.9 3.6 7.8E-05 39.0 14.2 129 64-224 49-181 (301)
33 PLN02336 phosphoethanolamine N 92.4 2.8 6.1E-05 42.1 13.6 106 87-224 39-145 (475)
34 PRK14103 trans-aconitate 2-met 92.2 9.2 0.0002 35.0 16.8 142 86-268 30-180 (255)
35 PF13649 Methyltransf_25: Meth 92.0 0.42 9.2E-06 37.2 5.6 94 89-213 1-98 (101)
36 PRK00216 ubiE ubiquinone/menaq 91.6 9.3 0.0002 33.9 17.5 155 87-272 53-225 (239)
37 PRK06202 hypothetical protein; 91.6 9.9 0.00021 34.2 15.6 149 86-271 61-221 (232)
38 PRK11873 arsM arsenite S-adeno 91.0 11 0.00025 34.7 15.1 148 87-270 79-228 (272)
39 PF12847 Methyltransf_18: Meth 90.2 2.1 4.5E-05 33.4 8.1 104 87-221 3-110 (112)
40 TIGR00477 tehB tellurite resis 90.0 8.4 0.00018 33.9 12.7 135 87-271 32-168 (195)
41 PRK11207 tellurite resistance 90.0 13 0.00028 32.8 16.1 137 87-272 32-170 (197)
42 PF03291 Pox_MCEL: mRNA cappin 89.4 4 8.7E-05 39.5 10.8 187 86-297 63-296 (331)
43 PRK12335 tellurite resistance 89.4 7.3 0.00016 36.5 12.4 134 87-270 122-257 (287)
44 PLN02232 ubiquinone biosynthes 87.0 4.3 9.3E-05 34.6 8.5 104 155-270 26-145 (160)
45 KOG2361 Predicted methyltransf 86.3 1.6 3.5E-05 40.3 5.6 152 88-269 74-234 (264)
46 PF13847 Methyltransf_31: Meth 84.1 20 0.00044 29.8 11.1 108 86-223 4-112 (152)
47 PLN02366 spermidine synthase 84.0 8.7 0.00019 36.8 9.8 121 86-213 92-228 (308)
48 PF02353 CMAS: Mycolic acid cy 83.1 30 0.00065 32.4 12.8 168 87-297 64-246 (273)
49 KOG3178 Hydroxyindole-O-methyl 83.0 27 0.00058 34.0 12.5 140 86-271 178-329 (342)
50 PF08003 Methyltransf_9: Prote 83.0 22 0.00047 34.1 11.8 151 87-273 117-268 (315)
51 TIGR01983 UbiG ubiquinone bios 82.5 34 0.00074 30.2 15.9 169 60-271 28-202 (224)
52 PF05401 NodS: Nodulation prot 82.2 8.7 0.00019 34.4 8.3 101 86-221 44-146 (201)
53 PRK05134 bifunctional 3-demeth 81.5 39 0.00084 30.2 15.0 149 87-271 50-204 (233)
54 TIGR03439 methyl_EasF probable 81.2 43 0.00093 32.3 13.3 136 60-225 56-202 (319)
55 PF07109 Mg-por_mtran_C: Magne 81.1 11 0.00024 29.8 7.6 71 192-269 4-79 (97)
56 PF08241 Methyltransf_11: Meth 80.6 20 0.00044 26.3 10.0 89 91-215 2-90 (95)
57 COG2230 Cfa Cyclopropane fatty 77.5 66 0.0014 30.5 14.1 226 29-309 19-262 (283)
58 cd02440 AdoMet_MTases S-adenos 76.1 27 0.00058 25.3 10.5 96 89-217 2-100 (107)
59 PRK00536 speE spermidine synth 75.7 36 0.00078 31.8 10.7 118 86-214 73-194 (262)
60 KOG4300 Predicted methyltransf 75.5 48 0.001 30.3 10.8 112 86-230 77-191 (252)
61 COG4262 Predicted spermidine s 73.1 8.8 0.00019 37.7 6.0 117 86-210 290-426 (508)
62 PRK05785 hypothetical protein; 72.6 73 0.0016 28.7 13.5 33 87-121 53-85 (226)
63 PRK00811 spermidine synthase; 71.5 38 0.00082 31.8 10.0 123 86-216 77-216 (283)
64 smart00138 MeTrc Methyltransfe 71.3 65 0.0014 29.9 11.4 56 155-220 185-240 (264)
65 PRK08317 hypothetical protein; 71.0 72 0.0016 27.9 18.4 143 87-269 21-173 (241)
66 PRK01683 trans-aconitate 2-met 69.6 88 0.0019 28.4 17.4 143 86-267 32-182 (258)
67 KOG1975 mRNA cap methyltransfe 65.9 1.4E+02 0.003 29.2 18.5 217 50-308 93-365 (389)
68 PHA03412 putative methyltransf 65.6 6.8 0.00015 36.2 3.4 34 87-120 194-228 (241)
69 PF05185 PRMT5: PRMT5 arginine 62.4 81 0.0018 31.9 10.7 93 87-210 188-285 (448)
70 PRK11188 rrmJ 23S rRNA methylt 61.7 1.2E+02 0.0026 27.0 12.3 101 87-219 53-163 (209)
71 PF03059 NAS: Nicotianamine sy 61.3 65 0.0014 30.4 9.2 151 33-220 73-228 (276)
72 TIGR02072 BioC biotin biosynth 60.9 1.2E+02 0.0025 26.7 17.1 98 87-220 36-134 (240)
73 PRK11705 cyclopropane fatty ac 58.1 1.9E+02 0.0042 28.4 15.3 150 87-281 169-321 (383)
74 PHA03411 putative methyltransf 55.0 7.6 0.00016 36.7 1.8 33 88-120 207-240 (279)
75 PRK06922 hypothetical protein; 54.8 1.6E+02 0.0035 31.4 11.6 110 87-226 420-542 (677)
76 smart00650 rADc Ribosomal RNA 53.7 1.4E+02 0.003 25.3 9.6 57 87-167 15-71 (169)
77 TIGR00417 speE spermidine synt 51.5 1.4E+02 0.003 27.6 9.8 44 86-130 73-117 (270)
78 PF01564 Spermine_synth: Sperm 51.4 2E+02 0.0043 26.4 10.7 122 86-214 77-214 (246)
79 TIGR00438 rrmJ cell division p 47.2 1.9E+02 0.004 24.9 11.5 101 87-219 34-144 (188)
80 TIGR03840 TMPT_Se_Te thiopurin 46.5 2.2E+02 0.0047 25.5 12.5 110 87-215 36-145 (213)
81 PF08557 Lipid_DES: Sphingolip 45.2 20 0.00043 23.5 2.1 33 109-142 4-36 (39)
82 COG4301 Uncharacterized conser 44.8 2.8E+02 0.006 26.2 12.1 113 86-225 79-198 (321)
83 COG4106 Tam Trans-aconitate me 44.4 2.3E+02 0.0049 26.2 9.4 94 86-218 31-126 (257)
84 PRK13255 thiopurine S-methyltr 43.5 2.5E+02 0.0053 25.2 12.6 108 87-216 39-150 (218)
85 PF07283 TrbH: Conjugal transf 42.2 68 0.0015 26.4 5.4 46 200-246 8-54 (121)
86 PRK10258 biotin biosynthesis p 40.3 2.8E+02 0.006 24.9 16.6 138 86-266 43-181 (251)
87 COG0421 SpeE Spermidine syntha 40.0 3.3E+02 0.0071 25.7 11.9 121 86-214 77-213 (282)
88 TIGR02081 metW methionine bios 37.3 2.7E+02 0.0059 24.0 14.9 141 87-270 15-165 (194)
89 PRK00121 trmB tRNA (guanine-N( 36.6 2.9E+02 0.0064 24.2 10.6 34 86-120 41-74 (202)
90 TIGR00091 tRNA (guanine-N(7)-) 35.5 3E+02 0.0064 23.9 13.5 125 86-241 17-149 (194)
91 PLN02781 Probable caffeoyl-CoA 35.3 3.4E+02 0.0074 24.5 11.9 110 86-224 69-180 (234)
92 COG3580 Uncharacterized protei 34.7 49 0.0011 31.8 3.8 47 68-119 263-313 (351)
93 TIGR03534 RF_mod_PrmC protein- 33.1 3.5E+02 0.0075 24.0 14.4 31 87-118 89-119 (251)
94 KOG1500 Protein arginine N-met 32.1 2.3E+02 0.0051 27.8 7.9 78 87-196 179-256 (517)
95 PRK05904 coproporphyrinogen II 31.7 2.6E+02 0.0056 27.1 8.5 59 183-243 57-115 (353)
96 cd04907 ACT_ThrD-I_2 Second of 31.5 28 0.0006 26.4 1.3 71 198-279 9-79 (81)
97 PRK13883 conjugal transfer pro 30.7 1.4E+02 0.003 25.6 5.6 44 201-245 37-81 (151)
98 PF05175 MTS: Methyltransferas 29.5 2.5E+02 0.0055 23.8 7.3 53 68-129 22-76 (170)
99 KOG0406 Glutathione S-transfer 29.0 2.8E+02 0.006 25.5 7.6 70 156-238 34-104 (231)
100 PRK07379 coproporphyrinogen II 28.7 2E+02 0.0044 28.3 7.3 86 182-269 66-169 (400)
101 PF14965 BRI3BP: Negative regu 28.2 76 0.0017 27.8 3.6 34 170-211 50-83 (177)
102 COG2226 UbiE Methylase involve 27.9 4.8E+02 0.01 24.0 16.2 150 87-269 53-221 (238)
103 PF01739 CheR: CheR methyltran 26.8 80 0.0017 28.1 3.7 57 154-220 117-173 (196)
104 COG2263 Predicted RNA methylas 26.1 1.6E+02 0.0034 26.5 5.3 120 87-270 47-166 (198)
105 cd03412 CbiK_N Anaerobic cobal 25.4 3.7E+02 0.008 21.8 7.8 59 200-272 18-77 (127)
106 PRK10611 chemotaxis methyltran 24.5 74 0.0016 30.1 3.2 37 184-220 224-260 (287)
107 PRK13835 conjugal transfer pro 24.2 1.8E+02 0.0039 24.7 5.1 43 201-245 43-86 (145)
108 TIGR01630 psiM2_ORF9 phage unc 23.9 3.7E+02 0.008 22.0 7.1 60 184-244 14-73 (142)
109 PF07091 FmrO: Ribosomal RNA m 23.5 85 0.0018 29.2 3.3 62 61-130 88-150 (251)
110 TIGR00479 rumA 23S rRNA (uraci 23.4 7.2E+02 0.016 24.5 10.6 58 87-166 294-351 (431)
111 PRK11783 rlmL 23S rRNA m(2)G24 23.0 8.9E+02 0.019 25.9 11.3 83 54-166 518-600 (702)
112 PRK13347 coproporphyrinogen II 22.8 4.3E+02 0.0094 26.4 8.5 60 182-243 103-164 (453)
113 PF08242 Methyltransf_12: Meth 22.7 43 0.00093 25.3 1.0 31 183-215 66-96 (99)
114 PF06180 CbiK: Cobalt chelatas 22.7 3E+02 0.0066 25.7 6.9 77 193-269 111-201 (262)
115 KOG0061 Transporter, ABC super 22.4 4.1E+02 0.009 27.9 8.5 93 182-282 188-284 (613)
116 PLN02589 caffeoyl-CoA O-methyl 22.1 6.2E+02 0.014 23.3 10.3 110 86-224 80-192 (247)
117 TIGR00539 hemN_rel putative ox 21.5 6.3E+02 0.014 24.3 9.2 60 182-243 51-112 (360)
118 PRK08446 coproporphyrinogen II 21.5 4E+02 0.0086 25.7 7.7 60 182-243 51-110 (350)
119 cd07041 STAS_RsbR_RsbS_like Su 21.0 2.4E+02 0.0053 21.6 5.2 85 163-254 21-106 (109)
120 COG0635 HemN Coproporphyrinoge 20.7 5.5E+02 0.012 25.6 8.6 61 181-243 86-149 (416)
121 PRK09196 fructose-1,6-bisphosp 20.2 4.3E+02 0.0094 25.8 7.5 59 154-213 15-74 (347)
122 TIGR01521 FruBisAldo_II_B fruc 20.1 4.7E+02 0.01 25.5 7.8 59 154-213 13-72 (347)
No 1
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-86 Score=609.89 Aligned_cols=311 Identities=39% Similarity=0.690 Sum_probs=285.3
Q ss_pred CCcCcchhHHhhhhHHHHhhHhhhhcCCCCchhHHhhhc-CCCcCCcccccchhHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 020223 7 DSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHT 85 (329)
Q Consensus 7 ~~~~~d~~V~~T~~~a~~sk~sa~~~gy~~Dp~a~~f~~-~~~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~ 85 (329)
...+.|.+||+||+||+.||+++++.||+.|||+.+|+. +..||+|.||||||+|+.+|+.+|.+||.+..+
T Consensus 15 ~~~~~d~~vq~Tnddss~ck~~~~~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~~------- 87 (335)
T KOG2918|consen 15 RGKSADSAVQGTNDDSSLCKRSATKSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTDG------- 87 (335)
T ss_pred cccCcchhhhhccchhhhhhhHHHhcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcCC-------
Confidence 345678899999999999999999999999999999998 677899999999999999999999999998654
Q ss_pred cceEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccch---hhhcccccccccCCcccCCCeEEEe
Q 020223 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELK---DKVGVTASISQAKGEVLGDNYKLLP 161 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~---~~~g~~~~~~~~~~~l~~~~y~~v~ 161 (329)
++||||||||+||++|||.+.+ ..++.|||||||+++++|..++.+.|.+. ++.+++ +...+++.+++.+|+++|
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD-~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDED-VVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhcccccc-ccccCcceeccCceeeec
Confidence 8999999999999999998875 57899999999999999996655555422 222333 456677899999999999
Q ss_pred ccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcC
Q 020223 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRG 241 (329)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g 241 (329)
||||+.+.++++|..+++|.+.|||||+||||+||+|+++..||+|+++.|+++.||+|||++|+|+||++|.+||++||
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~ 246 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRG 246 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCCCHHHHHHhhhccCCChHHHHHHHhcCcEEEEEecCCcccc
Q 020223 242 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLF 321 (329)
Q Consensus 242 ~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~i~~A~~~~~~~~ 321 (329)
+||+|++.|+|+|+|++||.++||+.|.+.||+++|+.++|.+||+||++||+|||+|||+++|+|||+++|++. ....
T Consensus 247 ~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~Ek~rie~lE~lDE~Eel~~l~~HYcL~~A~~~-~~~~ 325 (335)
T KOG2918|consen 247 CPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAEKKRIESLEPLDELEELHLLCQHYCLCHATKG-VFKG 325 (335)
T ss_pred CCCchhhhcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHHHHHHhhcccchhHHHHHHHHHHheeeeeecc-cccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 3333
Q ss_pred cccCC
Q 020223 322 GDFGF 326 (329)
Q Consensus 322 ~~~~~ 326 (329)
..+++
T Consensus 326 ~~l~l 330 (335)
T KOG2918|consen 326 IELGL 330 (335)
T ss_pred ceecc
Confidence 33444
No 2
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=2.4e-39 Score=300.53 Aligned_cols=231 Identities=19% Similarity=0.244 Sum_probs=184.5
Q ss_pred hhhhHHHHhhHhhhh--cCCCCchhHHhhhcCCCc------------------CCcccccchhHHHHHHHHHHHHHHhcC
Q 020223 17 ATNDDASASKLSCVK--KGYMKDDYIHLFVRRPVR------------------RSPIINRGYFARWAALRRLLYQFLDCG 76 (329)
Q Consensus 17 ~T~~~a~~sk~sa~~--~gy~~Dp~a~~f~~~~~r------------------r~P~inrG~~~R~~~id~~v~~fl~~~ 76 (329)
.|+...+.+|+...+ .+++.||||..|+++... ..|.+..++.+|++.||..+.+|++++
T Consensus 2 ~Tal~~a~~RA~es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~~g 81 (260)
T TIGR00027 2 RTALGVAAARAIETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVAAG 81 (260)
T ss_pred hHHHHHHHHHHHHhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466666666655543 489999999999976432 012344567899999999999999864
Q ss_pred CCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCC
Q 020223 77 SDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN 156 (329)
Q Consensus 77 ~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~ 156 (329)
..||||||||||||+|||.++ .+++|||||+|+|++.|+++|.++.. ..+++
T Consensus 82 ---------~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~-----------------~~~~~ 133 (260)
T TIGR00027 82 ---------IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELGA-----------------EPPAH 133 (260)
T ss_pred ---------CcEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcCC-----------------CCCCc
Confidence 479999999999999999876 57999999999999999999987421 12789
Q ss_pred eEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCH-----HHH
Q 020223 157 YKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDA-----FGQ 231 (329)
Q Consensus 157 y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~-----fg~ 231 (329)
|++|++||+ . .|.+.|..+|+|++.||+||+|||+|||+++++.+||+++++.|++++.++||++.+-+. +++
T Consensus 134 ~~~v~~Dl~-~-~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~ 211 (260)
T TIGR00027 134 RRAVPVDLR-Q-DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRA 211 (260)
T ss_pred eEEeccCch-h-hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHH
Confidence 999999999 3 466678888999999999999999999999999999999999998888999999987332 234
Q ss_pred HHHHHHH-HcCCCcccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCC
Q 020223 232 QMIRNLE-SRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (329)
Q Consensus 232 ~m~~~l~-~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l 281 (329)
.|.+... ..+.+|... .+.++..+.|..+||+..+. ++.++-.+|.
T Consensus 212 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~Gw~~~~~-~~~e~~~~y~ 258 (260)
T TIGR00027 212 PVYHAARGVDGSGLVFG---IDRADVAEWLAERGWRASEH-TPGELARRYG 258 (260)
T ss_pred HHHHhhhcccccccccC---CChhhHHHHHHHCCCeeecC-CHHHHHHHhC
Confidence 4443332 456666533 35788999999999999877 8888876654
No 3
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.2e-37 Score=289.25 Aligned_cols=240 Identities=21% Similarity=0.266 Sum_probs=186.8
Q ss_pred cCcchhHHhhhhHHHHhhHhhhh--cCCCCchhHHhhhcCCC---cCC--cccc--------c--chhHHHHHHHHHHHH
Q 020223 9 QSNKAAVQATNDDASASKLSCVK--KGYMKDDYIHLFVRRPV---RRS--PIIN--------R--GYFARWAALRRLLYQ 71 (329)
Q Consensus 9 ~~~d~~V~~T~~~a~~sk~sa~~--~gy~~Dp~a~~f~~~~~---rr~--P~in--------r--G~~~R~~~id~~v~~ 71 (329)
...-..|.+|+.-.+.+|+...+ .++++||||..|++... .+. |..+ + ++.+|+++||+.+.+
T Consensus 8 ~~~~~~v~~Tal~~a~~RA~es~~~~~L~~D~~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Rtr~fD~~~~~ 87 (297)
T COG3315 8 WDKLSGVGKTALIVAAARALESRKPDPLIDDPFAEELVRQGDDDFTKLADPALALGGGDFLERMNFLAARTRYFDDFVRA 87 (297)
T ss_pred chhhcchhHHHHHHHHHHHHHhcCCCcccCCHHHHHHHhhhHHHHHHhcChhhhcccchhhhhhhhHHHHHHHHHHHHHH
Confidence 33445789999999888887766 48999999999998531 111 2222 2 578999999999999
Q ss_pred HHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCc
Q 020223 72 FLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGE 151 (329)
Q Consensus 72 fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~ 151 (329)
|+.++ .+|||+||||||||+||+.++ .+++|||||+|+|++.|+++|++.. +.
T Consensus 88 ~~~~g---------~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~Pevi~~K~~~l~e~~------~~---------- 140 (297)
T COG3315 88 ALDAG---------IRQVVILGAGLDTRAYRLDWP--KGTRVFEVDLPEVIEFKKKLLAERG------AT---------- 140 (297)
T ss_pred HHHhc---------ccEEEEeccccccceeecCCC--CCCeEEECCCcHHHHHHHHHhhhcC------CC----------
Confidence 99987 389999999999999999997 5899999999999999999998742 11
Q ss_pred ccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHH
Q 020223 152 VLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQ 231 (329)
Q Consensus 152 l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~ 231 (329)
.+.++++|++||++.+ |.+.|.++|+|++.||+||+|||||||++++++++|+.|++.+++|+.+.+++..+.....+
T Consensus 141 -~~~~~~~Va~Dl~~~d-w~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~ 218 (297)
T COG3315 141 -PPAHRRLVAVDLREDD-WPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDR 218 (297)
T ss_pred -CCceEEEEeccccccc-hHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhc
Confidence 2679999999999855 45567888999999999999999999999999999999999999999999988644322222
Q ss_pred H--HHHHH------HHcCCCcccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhC
Q 020223 232 Q--MIRNL------ESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTF 280 (329)
Q Consensus 232 ~--m~~~l------~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~ 280 (329)
. +.... .+.+.++.+. ....+....+.++||.........+.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~e~~~~~---~~~~e~~~~l~~~g~~~~~~~~~~~~~~~~ 272 (297)
T COG3315 219 LRRPAARKTMRGEDLDRGELVYFG---DDPAEIETWLAERGWRSTLNRTTEDLAARY 272 (297)
T ss_pred ccchhhhhhccccccccccceecc---CCHHHHHHHHHhcCEEEEecCCcHHHHHHh
Confidence 1 11111 1234444432 235778888899999988776666665554
No 4
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=7e-38 Score=276.53 Aligned_cols=166 Identities=32% Similarity=0.508 Sum_probs=136.2
Q ss_pred HHhhhhHHHHhhHhhhhcCCCCchhHHhhhcCCCc----------------CCcccccchhHHHHHHHHHHHHHHhcCCC
Q 020223 15 VQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVR----------------RSPIINRGYFARWAALRRLLYQFLDCGSD 78 (329)
Q Consensus 15 V~~T~~~a~~sk~sa~~~gy~~Dp~a~~f~~~~~r----------------r~P~inrG~~~R~~~id~~v~~fl~~~~~ 78 (329)
++.++..|..+++. .+||+||||..|+++..+ +.|.+++|+++|+++||..+.+|+.++++
T Consensus 2 l~~~~~RA~~s~~~---~~~~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~~i~~~~~ 78 (183)
T PF04072_consen 2 LITAAARAAESKRP---DPYFEDPYAARLLSKLGRAWLKDYDFSKFNAASARDPGINRGYAARTRYIDDAVREFIAKHPG 78 (183)
T ss_dssp HHHHHHHHHHHHHH---HCSSHTCCCCHHHHCCCCHCC-B--SGHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCC---CcccCCHhHHHHHcccccccccchhhhcccccccccHHHHhHHHHHHHHHHHHHHHhhccCCC
Confidence 45667777777775 699999999999987621 36889999999999999999999988765
Q ss_pred CCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeE
Q 020223 79 GDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYK 158 (329)
Q Consensus 79 ~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~ 158 (329)
.+|||+||||||||+|||..+ .++++|||||+|+|++.|+++|++.... .+++++
T Consensus 79 -------~~qvV~LGaGlDTr~~Rl~~~-~~~~~~~evD~p~v~~~K~~~l~~~~~~-----------------~~~~~~ 133 (183)
T PF04072_consen 79 -------ARQVVNLGAGLDTRAYRLDNP-AGGVRWFEVDLPEVIALKRRLLPESGAR-----------------PPANYR 133 (183)
T ss_dssp -------ESEEEEET-TT--HHHHHHHT-TTTEEEEEEE-HHHHHHHHHHHHHTHHH-----------------HHEESS
T ss_pred -------CcEEEEcCCCCCchHHHhhcc-ccceEEEEeCCHHHHHHHHHHHHhCccc-----------------CCccee
Confidence 569999999999999999986 2489999999999999999999985321 134678
Q ss_pred EEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHH
Q 020223 159 LLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWAS 209 (329)
Q Consensus 159 ~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la 209 (329)
+|++||++ +.|.+.|.++|++++.||+||+|||++||+++++.++|++||
T Consensus 134 ~v~~Dl~~-~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 134 YVPADLRD-DSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEES-TTS-HHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred EEeccccc-hhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 89999999 456677888899999999999999999999999999999986
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.48 E-value=1.4e-06 Score=81.01 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=87.7
Q ss_pred cceEEEeCCCCchhh--hhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEec
Q 020223 86 KKQILSLGAGFDTTY--FQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPV 162 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~--~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~ 162 (329)
..|++-||||+=|.. ..+.....+..+++=||. |-|++.=+.+|..++ ..+-.+|.+
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--------------------~g~t~~v~a 128 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--------------------RGRTAYVQA 128 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--------------------TSEEEEEE-
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--------------------CccEEEEeC
Confidence 799999999997752 222111024455555555 455666666665421 224789999
Q ss_pred cCCCchhHHH--HHHhCCCCCCCCEEEEeeccccccCh-HHHHHHHHHHHhcCCCcEEEEEeecCCCC-HH-HHHHHHHH
Q 020223 163 DLRDIQMLNE--VINLANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTFSTAVFFLYEQIHPDD-AF-GQQMIRNL 237 (329)
Q Consensus 163 DL~~~~~l~~--~L~~~g~d~~~PTl~i~Egvl~YL~~-~~~~~ll~~la~~f~~~~~i~~e~i~p~d-~f-g~~m~~~l 237 (329)
|+++++.+-+ .+. .-+|.++|+-++.=+||.+++. +....+++.+.+..+.||++++.....+. +- .+.+.+.+
T Consensus 129 D~r~p~~iL~~p~~~-~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~ 207 (267)
T PF04672_consen 129 DLRDPEAILAHPEVR-GLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVY 207 (267)
T ss_dssp -TT-HHHHHCSHHHH-CC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHH
T ss_pred CCCCHHHHhcCHHHH-hcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 9999866544 222 3589999999999999999977 88999999999999999999888776542 21 24455666
Q ss_pred HHcCCCcccccCCCCHHHHHHHHHhCCCceee
Q 020223 238 ESRGCALLGINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 238 ~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
.+.+.|+. +.|.++..+.|. ||+.++
T Consensus 208 ~~~~~~~~----~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 208 AQAGSPGR----PRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHCCS--------B-HHHHHHCCT--TSEE-T
T ss_pred HcCCCCce----ecCHHHHHHHcC--CCccCC
Confidence 77777763 335555555554 898765
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.93 E-value=0.00072 Score=61.78 Aligned_cols=152 Identities=14% Similarity=0.212 Sum_probs=97.4
Q ss_pred ceEEEeCCCCchhhhhhcccC-CCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
..|+-+|||.=.....+.... .++.+++=+|. |++++.=++.+... +. ..+.+++..|+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-------~~------------~~~v~~~~~d~ 115 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-------HS------------EIPVEILCNDI 115 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-------CC------------CCCeEEEECCh
Confidence 579999999766555443321 24678888888 66665444444431 10 34677888888
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHH-HHHHHH---H-H
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFG-QQMIRN---L-E 238 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg-~~m~~~---l-~ 238 (329)
.+.. + ....++++-.++.|++++....+++.+.+.. |+|.+++.|.+.+.+... ..+.+. + .
T Consensus 116 ~~~~----------~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 183 (239)
T TIGR00740 116 RHVE----------I--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKR 183 (239)
T ss_pred hhCC----------C--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHH
Confidence 7642 1 1234788888999999988889999998876 577888888877654433 323221 1 1
Q ss_pred HcCC----------CcccccCCCCHHHHHHHHHhCCCceee
Q 020223 239 SRGC----------ALLGINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 239 ~~g~----------~l~~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
..|. .+.+.....|++++...++++||+.++
T Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 184 ANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 1222 122233456889999999999998643
No 7
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.70 E-value=0.0028 Score=60.10 Aligned_cols=152 Identities=11% Similarity=0.132 Sum_probs=100.8
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
...|+-+|||.=+....+... .++.+++=+|.|++++.=++.+.+. | ..+++++++.|+.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~-~p~~~~~~~D~~~~~~~a~~~~~~~-------g------------l~~rv~~~~~d~~ 209 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKH-FPELDSTILNLPGAIDLVNENAAEK-------G------------VADRMRGIAVDIY 209 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHH-CCCCEEEEEecHHHHHHHHHHHHhC-------C------------ccceEEEEecCcc
Confidence 468999999998887777665 3678888889999887655555442 1 1568899999987
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCC--CHHHHHHHHHHHHcCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPD--DAFGQQMIRNLESRGC 242 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~--d~fg~~m~~~l~~~g~ 242 (329)
+.. + ++ .-+++.-.++...+++...++++.+.+.. |+|.++++|.+.++ ++.-..+...+-..+.
T Consensus 210 ~~~----------~-~~-~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~ 277 (306)
T TIGR02716 210 KES----------Y-PE-ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGM 277 (306)
T ss_pred CCC----------C-CC-CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHccc
Confidence 631 1 11 23444556777788888899999998866 56788889986543 2211222222222222
Q ss_pred CcccccCCCCHHHHHHHHHhCCCceeee
Q 020223 243 ALLGINATPTLLAKEKLFLDQGWQQAVA 270 (329)
Q Consensus 243 ~l~~~~~~~t~~~~~~rf~~~Gw~~~~~ 270 (329)
++ +...+.+.++..+.+.++||+.++.
T Consensus 278 ~~-~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 278 PF-SVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred cc-ccccCCCHHHHHHHHHHcCCCeeEe
Confidence 21 2334456788999999999998754
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.62 E-value=0.0058 Score=56.97 Aligned_cols=155 Identities=10% Similarity=0.149 Sum_probs=99.0
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.-.....+... .++.++=+|..+.+-...+ .... ..+..++.+|+.
T Consensus 54 ~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----------------------~~~i~~~~~D~~ 109 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----------------------KNKIEFEANDIL 109 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----------------------CCceEEEECCcc
Confidence 57999999987666666443 3567778887543322222 2111 235677777776
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCC-CHHHHHHHHHHHHcCCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPD-DAFGQQMIRNLESRGCA 243 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~-d~fg~~m~~~l~~~g~~ 243 (329)
+. .+....--++++-.++.+++.+....+++.+.+.. |+|.+++.|..... ......+...+..++.
T Consensus 110 ~~----------~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~- 178 (263)
T PTZ00098 110 KK----------DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKY- 178 (263)
T ss_pred cC----------CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCC-
Confidence 42 23223345666766677888778889999988876 56777777765543 1222333222333332
Q ss_pred cccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCC
Q 020223 244 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (329)
Q Consensus 244 l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l 281 (329)
.+.++++..+.++++||++++..|+.+.|..++
T Consensus 179 -----~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~ 211 (263)
T PTZ00098 179 -----TLIPIQEYGDLIKSCNFQNVVAKDISDYWLELL 211 (263)
T ss_pred -----CCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHH
Confidence 345788899999999999999888888877655
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.32 E-value=0.015 Score=53.52 Aligned_cols=152 Identities=13% Similarity=0.248 Sum_probs=94.8
Q ss_pred ceEEEeCCCCchhhhhhccc-CCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 87 KQILSLGAGFDTTYFQLQAE-GKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~-~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
..|+-+|||.=.....+... ..++.+++=||. |++++.=++.+... +. ..+.+++..|+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-------~~------------~~~v~~~~~d~ 118 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-------KA------------PTPVDVIEGDI 118 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-------CC------------CCCeEEEeCCh
Confidence 57999999976654444321 025678888888 55555444444331 10 34677888887
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCC-CHHHHHHHHH----HH
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPD-DAFGQQMIRN----LE 238 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~-d~fg~~m~~~----l~ 238 (329)
.+.. + ...-++++=.++.+++++.-.++++.+.+.. |+|.+++.|.+.+. +..+..+.+. ..
T Consensus 119 ~~~~----------~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~ 186 (247)
T PRK15451 119 RDIA----------I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKR 186 (247)
T ss_pred hhCC----------C--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHH
Confidence 6531 1 1134677778889999988889999998876 56788888877654 3334332221 12
Q ss_pred HcCCCc----------ccccCCCCHHHHHHHHHhCCCceee
Q 020223 239 SRGCAL----------LGINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 239 ~~g~~l----------~~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
..|.+- ..+...-|++.+.++++++||+.+.
T Consensus 187 ~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 187 ANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred HcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 223321 1222334788999999999998753
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.96 E-value=0.02 Score=52.89 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhh
Q 020223 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDK 138 (329)
Q Consensus 60 ~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~ 138 (329)
+|...+.+-+..+++..+. ....|+-+|||.-.....+... +..++=+|. |++++.=++.+.+.
T Consensus 25 ~r~~~~~~~~~~~l~~l~~------~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~------ 89 (255)
T PRK11036 25 IRQAILWQDLDRLLAELPP------RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAK------ 89 (255)
T ss_pred HHHHHHHHHHHHHHHhcCC------CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhc------
Confidence 4666666656666665432 1467999999999888788765 456777777 45554433343321
Q ss_pred hcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEE
Q 020223 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVF 217 (329)
Q Consensus 139 ~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~ 217 (329)
| ...+.+++.+|..+.. . +....--++++-.|+.|++.. ..+++.+.+.. |+|.+
T Consensus 90 -g------------~~~~v~~~~~d~~~l~---~------~~~~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 90 -G------------VSDNMQFIHCAAQDIA---Q------HLETPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGAL 145 (255)
T ss_pred -C------------CccceEEEEcCHHHHh---h------hcCCCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEE
Confidence 1 1356788888876631 1 112344677788889999654 36777777766 45555
Q ss_pred EEEeecCCCCHHHHH-HHHHHHH--cCCCc-----ccccCCCCHHHHHHHHHhCCCceeeecCHH
Q 020223 218 FLYEQIHPDDAFGQQ-MIRNLES--RGCAL-----LGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (329)
Q Consensus 218 i~~e~i~p~d~fg~~-m~~~l~~--~g~~l-----~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~ 274 (329)
++.. .+++....+. +..++.. .+.+- .....+.++++..+.+.++||+.+....+.
T Consensus 146 ~i~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 146 SLMF-YNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred EEEE-ECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEE
Confidence 4432 2332211111 1112211 11110 011123467888999999999987654443
No 11
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.76 E-value=0.14 Score=48.44 Aligned_cols=180 Identities=19% Similarity=0.221 Sum_probs=118.3
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhccc-CCCCCEEEEecc-hhHHHHHHHHHhccc
Q 020223 56 RGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDF-IEVTSKKAALIETHG 133 (329)
Q Consensus 56 rG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~-~~~~~~~~EvD~-p~vi~~K~~~i~~~~ 133 (329)
||.-.|-..+..+|.+.+..-... ..+.-||.+.||-=-.-+-.... +.....+.=.|+ |..++.=+++|++..
T Consensus 110 rGIR~Rk~~l~~~i~~ai~~L~~~----g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g 185 (311)
T PF12147_consen 110 RGIRQRKVHLEELIRQAIARLREQ----GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG 185 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC
Confidence 566778888888998887653210 02678999999942222222222 111245566676 566777777777632
Q ss_pred cchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHH-HHHHHHHHHhcC
Q 020223 134 ELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS-SRAIVGWASKTF 212 (329)
Q Consensus 134 ~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~-~~~ll~~la~~f 212 (329)
- .+-.++...|..|.+.+.. + ...|||.|.-|+.=|++..+ +...|+.+++..
T Consensus 186 L-------------------~~i~~f~~~dAfd~~~l~~------l-~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al 239 (311)
T PF12147_consen 186 L-------------------EDIARFEQGDAFDRDSLAA------L-DPAPTLAIVSGLYELFPDNDLVRRSLAGLARAL 239 (311)
T ss_pred C-------------------ccceEEEecCCCCHhHhhc------c-CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHh
Confidence 1 3445888888888654432 3 35899999999999999966 888999999988
Q ss_pred CCcEEEEEeecCCCCHHHHHHHHHHHH--cCCCcccccCCCCHHHHHHHHHhCCCcee
Q 020223 213 STAVFFLYEQIHPDDAFGQQMIRNLES--RGCALLGINATPTLLAKEKLFLDQGWQQA 268 (329)
Q Consensus 213 ~~~~~i~~e~i~p~d~fg~~m~~~l~~--~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~ 268 (329)
+++.+++|.- .|.++--++..+.|.+ -|.+| ++-..|-.++-+.+..+||+..
T Consensus 240 ~pgG~lIyTg-QPwHPQle~IAr~LtsHr~g~~W--vMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 240 EPGGYLIYTG-QPWHPQLEMIARVLTSHRDGKAW--VMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred CCCcEEEEcC-CCCCcchHHHHHHHhcccCCCce--EEEecCHHHHHHHHHHcCCchh
Confidence 7777888853 2333333333344432 35666 3456677788888899999854
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.45 E-value=0.24 Score=44.64 Aligned_cols=153 Identities=11% Similarity=0.033 Sum_probs=83.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....+.....+...++=+|. |+.++.=++.+... ..+++.++..|..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------~~~~v~~~~~d~~ 106 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA--------------------GLHNVELVHGNAM 106 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc--------------------CCCceEEEEechh
Confidence 57999999976666666543113456777777 44444333333321 0346777777776
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCC-
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCA- 243 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~- 243 (329)
+.. +..+.--++++-.++-+++. ..++++.+.+.. |+|.+++.|...|+...-+.....+-+.-.|
T Consensus 107 ~~~----------~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (231)
T TIGR02752 107 ELP----------FDDNSFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPL 174 (231)
T ss_pred cCC----------CCCCCccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHH
Confidence 532 11112224444445555543 346677666655 5677777776665532211111100000000
Q ss_pred ---------------cccccCCCCHHHHHHHHHhCCCceeeec
Q 020223 244 ---------------LLGINATPTLLAKEKLFLDQGWQQAVAW 271 (329)
Q Consensus 244 ---------------l~~~~~~~t~~~~~~rf~~~Gw~~~~~~ 271 (329)
..+...|++.++..+.+.++||+.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 175 FGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred hhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEE
Confidence 1134567889999999999999987654
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.44 E-value=0.12 Score=49.66 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=90.3
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
+.|+-+|||.=...+++...+ ...++-||....+-.+.+.+.+. .+. ..+.+++.+|+.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~------~~~------------~~~i~~~~~d~e~ 183 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKL------LGN------------DQRAHLLPLGIEQ 183 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHh------cCC------------CCCeEEEeCCHHH
Confidence 679999999988889987652 33588899765544433333321 110 3467888888765
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHH-HHHHHHcCCCc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQM-IRNLESRGCAL 244 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m-~~~l~~~g~~l 244 (329)
.. + ...--++++-+|+.++.. ...+|+.+.+.. |+|.+++-+.+.+.+.-...+ ..+..+ +
T Consensus 184 lp----------~-~~~FD~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~----~ 246 (322)
T PRK15068 184 LP----------A-LKAFDTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK----M 246 (322)
T ss_pred CC----------C-cCCcCEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc----C
Confidence 42 1 122346677788888653 456788887776 455554333332222110000 111111 2
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeeecCHHH
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVAWDMLR 275 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~ 275 (329)
.++...+|++...+.+.++||+.+++.+...
T Consensus 247 ~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 247 RNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred ccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 2233347889999999999999988776543
No 14
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.25 E-value=0.033 Score=50.84 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=78.2
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..+||-+|+|.=.....+... .++++++=+|+|+|++.=++ .+++.+++.|+.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dlp~v~~~~~~--------------------------~~rv~~~~gd~f 153 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARA-YPNLRATVFDLPEVIEQAKE--------------------------ADRVEFVPGDFF 153 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHH-STTSEEEEEE-HHHHCCHHH--------------------------TTTEEEEES-TT
T ss_pred ccEEEeccCcchHHHHHHHHH-CCCCcceeeccHhhhhcccc--------------------------ccccccccccHH
Confidence 578999999998888888766 58999999999999765443 358999999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-C--cEEEEEeecCCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-T--AVFFLYEQIHPD 226 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~--~~~i~~e~i~p~ 226 (329)
+. + |. .=+++.=-||...+++++..||+.+++..+ + |.+++.|++.|+
T Consensus 154 ~~-----------~-P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 154 DP-----------L-PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp TC-----------C-SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hh-----------h-cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 52 1 12 347777889999999999999999999885 4 688889999765
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=96.19 E-value=0.48 Score=45.79 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=89.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
...|+-+|||.=.....|... .+..++=||..+.+..+.+...+. .|. .++..++..|..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~------~g~------------~~~v~~~~~D~~ 178 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARK--YGANVKGITLSPVQAARANALAAA------QGL------------SDKVSFQVADAL 178 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHh------cCC------------CCceEEEEcCcc
Confidence 367999999988777777654 256777888765554443333221 011 456788888887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCC-----C---HHHHHHHHH
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPD-----D---AFGQQMIRN 236 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~-----d---~fg~~m~~~ 236 (329)
+.. +..+.--++++-.++.+++. ..++++.+.+.. |+|.+++.+..... . ...+.+.+.
T Consensus 179 ~~~----------~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (340)
T PLN02244 179 NQP----------FEDGQFDLVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK 246 (340)
T ss_pred cCC----------CCCCCccEEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence 642 21223345566556666654 346677776655 56777776654321 1 111222222
Q ss_pred HHHcCCCcccccCCCCHHHHHHHHHhCCCceeeecCHHHH
Q 020223 237 LESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRV 276 (329)
Q Consensus 237 l~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~ 276 (329)
+.. +.-++ .+.+.++..+.++++||..++..|..+-
T Consensus 247 i~~-~~~~p---~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 247 ICA-AYYLP---AWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred HHh-hccCC---CCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 211 11111 3357889999999999999887665544
No 16
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.17 E-value=0.28 Score=47.64 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=87.2
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+-+|||.=.....+... .+...++=+|..+.+-.+.+.... ..+..++..|+.+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~~~VtgVD~S~~mL~~A~~k~~----------------------~~~i~~i~gD~e~ 171 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----------------------LKECKIIEGDAED 171 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhhh----------------------ccCCeEEeccHHh
Confidence 47999999986655555432 133566777774433322222111 1244566666654
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~ 245 (329)
. ++..+.--++++-+++.|++.. .++++.+.+.. |+|.+++.+.+.|.....+.+. .. +
T Consensus 172 l----------p~~~~sFDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~----~~---~- 231 (340)
T PLN02490 172 L----------PFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFA----DV---W- 231 (340)
T ss_pred C----------CCCCCceeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhh----hh---h-
Confidence 2 2333344577888889888765 35777777755 5677777777766432222211 10 1
Q ss_pred cccCCCCHHHHHHHHHhCCCceeeecCHHHHH
Q 020223 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVY 277 (329)
Q Consensus 246 ~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~ 277 (329)
..+++.++..+.++++||+.++..+....|
T Consensus 232 --~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 232 --MLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred --ccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 124678899999999999998877655544
No 17
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.15 E-value=0.59 Score=43.40 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=89.4
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....+.....++..++=||.-+-+-...+ ....... + ...+.+++..|..
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-----~------------~~~~i~~~~~d~~ 137 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-----S------------CYKNIEWIEGDAT 137 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-----c------------cCCCeEEEEcccc
Confidence 57999999987665555432113457788887543322221 1110000 0 1346788888876
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHc-CCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESR-GCA 243 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~-g~~ 243 (329)
+.. +..+.--++++-.++..++ ...++++-+.+.. |+|.+++.|...+...++..+.+.+-+. -.|
T Consensus 138 ~lp----------~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~ 205 (261)
T PLN02233 138 DLP----------FDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVP 205 (261)
T ss_pred cCC----------CCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhH
Confidence 642 2222333455555555554 3455677776655 6678888888877766665443321110 000
Q ss_pred c--------------ccccCCCCHHHHHHHHHhCCCceeeecC
Q 020223 244 L--------------LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (329)
Q Consensus 244 l--------------~~~~~~~t~~~~~~rf~~~Gw~~~~~~d 272 (329)
+ .++..+++.++..+.+.++||+.++..+
T Consensus 206 ~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 206 VATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 0 1234578889999999999999876544
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.07 E-value=0.13 Score=47.16 Aligned_cols=153 Identities=10% Similarity=0.087 Sum_probs=60.3
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchh-HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....+...-.++..++=+|+.+ +++.=++.+.+. + ..+.+++.+|..
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~-------~-------------~~~i~~v~~da~ 108 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE-------G-------------LQNIEFVQGDAE 108 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-------T---------------SEEEEE-BTT
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-------C-------------CCCeeEEEcCHH
Confidence 5899999998766666654312456889999954 444333344331 1 237888998887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCC-
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCA- 243 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~- 243 (329)
++. +..+.=-.+++=..+-.++. -.+.++-+.+.. |+|.+++.|.-.|.....+...+-.-+.=.|
T Consensus 109 ~lp----------~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~ 176 (233)
T PF01209_consen 109 DLP----------FPDNSFDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPL 176 (233)
T ss_dssp B------------S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------
T ss_pred Hhc----------CCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccc
Confidence 752 22222233444444444443 233455555544 7788889998888765443322211111111
Q ss_pred ---------------cccccCCCCHHHHHHHHHhCCCceeeec
Q 020223 244 ---------------LLGINATPTLLAKEKLFLDQGWQQAVAW 271 (329)
Q Consensus 244 ---------------l~~~~~~~t~~~~~~rf~~~Gw~~~~~~ 271 (329)
..++..||+.++..+.++++||+.++..
T Consensus 177 ~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 177 IGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 2367788999999999999999987643
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.06 E-value=0.25 Score=47.36 Aligned_cols=152 Identities=12% Similarity=0.120 Sum_probs=86.8
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
+.|+-+|||.-...+++...+ ...++-||.-..+-...+.+++. .+. ..+.+++.+|+.+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~------~~~------------~~~v~~~~~~ie~ 182 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKL------LDN------------DKRAILEPLGIEQ 182 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHH------hcc------------CCCeEEEECCHHH
Confidence 689999999887778876652 33688999766543322222220 111 3456677777655
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHH-HHHHHcCCCc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMI-RNLESRGCAL 244 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~-~~l~~~g~~l 244 (329)
... . ..=-++++.+|+.+++.. ...|+.+.+.. |+|.+++-+.+...+.....+- ....+ +
T Consensus 183 lp~----------~-~~FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k----~ 245 (314)
T TIGR00452 183 LHE----------L-YAFDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAK----M 245 (314)
T ss_pred CCC----------C-CCcCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHh----c
Confidence 321 1 122467778888887533 45677777766 5666655443322211000000 01111 1
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeeecCHHH
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVAWDMLR 275 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~ 275 (329)
......|+.+.....+.++||+.+++.+...
T Consensus 246 ~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 246 KNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 1222357888999999999999998766533
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.88 E-value=0.27 Score=49.56 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=94.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....|... .+..++=+|..+.+-...+ ... + ...+..++..|+.
T Consensus 268 ~~vLDiGcG~G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~~~~---------~------------~~~~v~~~~~d~~ 324 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAEN--FDVHVVGIDLSVNMISFALERAI---------G------------RKCSVEFEVADCT 324 (475)
T ss_pred CEEEEEeccCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHhh---------c------------CCCceEEEEcCcc
Confidence 57999999987666666654 3567777777533222211 111 1 0346777788876
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
+.. +..+.--++++-+++.+++. ..++++.+.+.. |+|.+++-|.......-+..+...+...|..
T Consensus 325 ~~~----------~~~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~- 391 (475)
T PLN02336 325 KKT----------YPDNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYD- 391 (475)
T ss_pred cCC----------CCCCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCC-
Confidence 631 22234567888888888864 346788887766 5566666565543221122233334444433
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCC
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l 281 (329)
.++.++..+.+.++||+++...++.+-|..++
T Consensus 392 -----~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~~ 423 (475)
T PLN02336 392 -----LHDVQAYGQMLKDAGFDDVIAEDRTDQFLQVL 423 (475)
T ss_pred -----CCCHHHHHHHHHHCCCeeeeeecchHHHHHHH
Confidence 35678889999999999998888777665433
No 21
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.61 E-value=0.54 Score=42.09 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=81.6
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
...|+-+|||.=.....+... +..++=+|. |++++.=++.+... + ...+..++.+|+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~-------~------------~~~~i~~~~~d~ 113 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGR-------D------------VAGNVEFEVNDL 113 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc-------C------------CCCceEEEECCh
Confidence 468999999987776666544 345556665 33333323333221 0 024667777777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
.+.. +..-++++-.++.|++++....+++.+.+...++.++.+-+..+.-..-+.+...+. +.+-
T Consensus 114 ~~~~-------------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~ 178 (219)
T TIGR02021 114 LSLC-------------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFP--GSSR 178 (219)
T ss_pred hhCC-------------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCc--Cccc
Confidence 6531 233455665567888888888888888876555554444221110001111111111 1111
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeee
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVA 270 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~ 270 (329)
..-..+.++++..+.+.++||+.+..
T Consensus 179 ~~~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred ccceEEecHHHHHHHHHHcCceeeee
Confidence 11113457888999999999998764
No 22
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.56 E-value=0.86 Score=40.77 Aligned_cols=150 Identities=12% Similarity=0.083 Sum_probs=82.7
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
...|+-+|||.=.....|... ...++=+|.. .+++.=++.+... +. .++.+++.+|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~-------~~------------~~~i~~~~~d~ 121 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEA-------GL------------AGNITFEVGDL 121 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhc-------CC------------ccCcEEEEcCc
Confidence 357999999987766666554 3346666653 3333333333221 10 24667777774
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
... + ..--++++-.++.+++.+....+++.+.+..+++.++.+....+...+-+.+.+.+......
T Consensus 122 ~~~------------~-~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~- 187 (230)
T PRK07580 122 ESL------------L-GRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRT- 187 (230)
T ss_pred hhc------------c-CCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCC-
Confidence 321 0 12235666677778888899999999988666655555543322111111111111000000
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeeecC
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~~d 272 (329)
.. ..+.+.++..+.+.++||+..+...
T Consensus 188 ~~-~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 188 TR-IYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CC-ccccCHHHHHHHHHHCCCceEeeee
Confidence 11 1234667788889999999877544
No 23
>PLN03075 nicotianamine synthase; Provisional
Probab=94.98 E-value=0.3 Score=46.47 Aligned_cols=155 Identities=14% Similarity=0.274 Sum_probs=90.7
Q ss_pred CCCCchhHHhhhcCCCcCCcccccchhHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCC-CchhhhhhcccCCCCC
Q 020223 33 GYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAG-FDTTYFQLQAEGKAPH 111 (329)
Q Consensus 33 gy~~Dp~a~~f~~~~~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaG-lDTr~~RL~~~~~~~~ 111 (329)
|.++-.|+..+.........+-+.-||-+..-+.+.--++|...... +.++|+-+||| .=-.+.-+.....++.
T Consensus 76 ~~lE~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~-----~p~~VldIGcGpgpltaiilaa~~~p~~ 150 (296)
T PLN03075 76 GLLEAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNG-----VPTKVAFVGSGPLPLTSIVLAKHHLPTT 150 (296)
T ss_pred HHHHHHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcC-----CCCEEEEECCCCcHHHHHHHHHhcCCCC
Confidence 56677888888854221111222446666666666555555443211 15789999999 3223444432212565
Q ss_pred EEEEecchhHHHHHH-HHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEee
Q 020223 112 LYVELDFIEVTSKKA-ALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAE 190 (329)
Q Consensus 112 ~~~EvD~p~vi~~K~-~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~E 190 (329)
++.-+|..+-...+. +.+.+.+.+ .++.++.-.|+.+... . +. .+| .+|+.
T Consensus 151 ~~~giD~d~~ai~~Ar~~~~~~~gL------------------~~rV~F~~~Da~~~~~--~-l~--~FD----lVF~~- 202 (296)
T PLN03075 151 SFHNFDIDPSANDVARRLVSSDPDL------------------SKRMFFHTADVMDVTE--S-LK--EYD----VVFLA- 202 (296)
T ss_pred EEEEEeCCHHHHHHHHHHhhhccCc------------------cCCcEEEECchhhccc--c-cC--CcC----EEEEe-
Confidence 666666643333333 333221211 5678899888876310 0 11 233 67777
Q ss_pred ccccccChHHHHHHHHHHHhcCCCcEEEEEe
Q 020223 191 CVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221 (329)
Q Consensus 191 gvl~YL~~~~~~~ll~~la~~f~~~~~i~~e 221 (329)
++.|++.+.-.++++.+.+...+|..+++-
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 999999999999999999988766665553
No 24
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.71 E-value=3.5 Score=39.56 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=82.0
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH-HHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....|... +..++=+|+.+.+ +.=++..... +.. .....+..+...|+.
T Consensus 146 ~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~-------~~~--------~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEA-------LAA--------LPPEVLPKFEANDLE 207 (315)
T ss_pred CEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc-------ccc--------cccccceEEEEcchh
Confidence 58999999987666666654 4577888885543 3222222210 000 000234566666764
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~ 245 (329)
+. . ..+| ++++-.++.+++.+....+++++....+++.++.+ .|.. +...+.+.+ |..+.
T Consensus 208 ~l-------~-~~fD-----~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~---~p~~-~~~~~l~~~---g~~~~ 267 (315)
T PLN02585 208 SL-------S-GKYD-----TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISF---APKT-LYYDILKRI---GELFP 267 (315)
T ss_pred hc-------C-CCcC-----EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEe---CCcc-hHHHHHHHH---HhhcC
Confidence 32 1 1243 56666777788888888999999886555554444 2321 222222222 22232
Q ss_pred cc----cCC-CCHHHHHHHHHhCCCceee
Q 020223 246 GI----NAT-PTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 246 ~~----~~~-~t~~~~~~rf~~~Gw~~~~ 269 (329)
+- ..| .+.++..+.+.++||+...
T Consensus 268 g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 268 GPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred CCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 21 123 3678888889999999765
No 25
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.36 E-value=1.3 Score=39.52 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=63.8
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
...|+-+|||.=.....|... .++..++=||.-+.+-...+. . ..+..++..|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~--~----------------------~~~~~~~~~d~~ 98 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKA--Y----------------------LPNINIIQGSLF 98 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHh--h----------------------CCCCcEEEeecc
Confidence 357999999987665555443 235667777764333222221 0 011234455554
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHP 225 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p 225 (329)
+. +....--++++-+|+.+++++...++++.+.+.. +..+++.|..+|
T Consensus 99 ~~-----------~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~-~~~v~i~e~~~~ 146 (204)
T TIGR03587 99 DP-----------FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS-NRYILIAEYYNP 146 (204)
T ss_pred CC-----------CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc-CcEEEEEEeeCC
Confidence 41 2223456788999999999999999999988865 445666676554
No 26
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.27 E-value=1.2 Score=40.13 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=113.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHH-Hhccccchhhhcccc
Q 020223 65 LRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVTA 143 (329)
Q Consensus 65 id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~-i~~~~~l~~~~g~~~ 143 (329)
|-.++.++|.... ..|+-+|+|.=.-+-.+... .++++|.=-|..+....-.+. +... .+
T Consensus 14 Il~vL~~~l~~~~---------~~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~-~~-------- 74 (204)
T PF06080_consen 14 ILEVLKQYLPDSG---------TRVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEA-GL-------- 74 (204)
T ss_pred HHHHHHHHhCccC---------ceEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhc-CC--------
Confidence 3446666664321 24999999976664444444 578999988887766322222 2221 11
Q ss_pred cccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEEEEEee
Q 020223 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQ 222 (329)
Q Consensus 144 ~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~~e~ 222 (329)
+.-..-+..|+.+..|-.. . .++.....--.+++==++-.++.+.+..|++..++..+ +|.+++|-+
T Consensus 75 ----------~Nv~~P~~lDv~~~~w~~~-~-~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 75 ----------PNVRPPLALDVSAPPWPWE-L-PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ----------cccCCCeEeecCCCCCccc-c-ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 1122336778887533111 1 12334455577888888899999999999999999874 678889998
Q ss_pred cCCCCHH---H-HHHHHHHHHcCCCcccccCCCCHHHHHHHHHhCCCceeeecCHH
Q 020223 223 IHPDDAF---G-QQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (329)
Q Consensus 223 i~p~d~f---g-~~m~~~l~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~ 274 (329)
.+-+-.| + +..-..|+.++-. .|+ .++++..+...++|+...+..+|-
T Consensus 143 F~~~G~~ts~SN~~FD~sLr~rdp~-~Gi---RD~e~v~~lA~~~GL~l~~~~~MP 194 (204)
T PF06080_consen 143 FNRDGKFTSESNAAFDASLRSRDPE-WGI---RDIEDVEALAAAHGLELEEDIDMP 194 (204)
T ss_pred cccCCEeCCcHHHHHHHHHhcCCCC-cCc---cCHHHHHHHHHHCCCccCcccccC
Confidence 8754222 2 3445667777743 465 457888888899999988777764
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=94.26 E-value=1.7 Score=38.75 Aligned_cols=172 Identities=11% Similarity=0.089 Sum_probs=96.2
Q ss_pred eEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH-HHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 88 QILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 88 QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
.|+-+|||.=.....+... .+++.+.-+|....+ +.=++.+... |. ..+.+++..|+.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~-~~~~~v~gid~s~~~~~~a~~~~~~~-------gl------------~~~i~~~~~d~~~ 61 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER-HPHLQLHGYTISPEQAEVGRERIRAL-------GL------------QGRIRIFYRDSAK 61 (224)
T ss_pred eEEEECCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhc-------CC------------CcceEEEeccccc
Confidence 4899999987666666544 245677777774433 2222223221 11 4567778888754
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~ 245 (329)
.. + .. .+ -++++-.++..++. -..+++.+.+.. |+|.+++.+.+... .. ..+.+..
T Consensus 62 ~~-~----~~-~f-----D~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~--------~~~~~~~ 118 (224)
T smart00828 62 DP-F----PD-TY-----DLVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANL--LS--------AIEHEET 118 (224)
T ss_pred CC-C----CC-CC-----CEeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEccccc--Cc--------ccccccc
Confidence 21 1 11 13 25566556666643 467888887766 56777666654321 00 0011110
Q ss_pred cccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCCC----HHHHHHhhhccCCCh-----HHHHHHH
Q 020223 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFIN----PQERRRIERLELFDE-----FEEWHMM 304 (329)
Q Consensus 246 ~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~----~~er~ri~~lE~fDE-----~Ee~~l~ 304 (329)
...+++.++..+.+.+.||+.++..++..-|..++- .+.+.++.++ .+|| |+.+..+
T Consensus 119 -~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~ 184 (224)
T smart00828 119 -TSYLVTREEWAELLARNNLRVVEGVDASLEIANFLYDPGFEDNLERLYQD-DLDEVTKRHFRGIANL 184 (224)
T ss_pred -ccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhccChhHHHHHHHhccc-cchHHHHHHHhhHHHH
Confidence 112567788888899999999988777666655441 2233344444 4676 4444444
No 28
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.16 E-value=3.7 Score=36.10 Aligned_cols=154 Identities=11% Similarity=0.137 Sum_probs=82.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
...|+-+|||.-.....+.........++=+|. |+.++.-++.+.. ..+.+++..|+
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~----------------------~~~i~~~~~d~ 97 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL----------------------PLNIEFIQADA 97 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc----------------------CCCceEEecch
Confidence 367999999976665555443211145666666 3343333332220 33566777777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCH-HHH-------HHHH
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDA-FGQ-------QMIR 235 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~-fg~-------~m~~ 235 (329)
.+.. +.....-++++-.++.+++ ....+++.+.+.. |+|.+++.+...+... +.. .|..
T Consensus 98 ~~~~----------~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
T TIGR01934 98 EALP----------FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLP 165 (223)
T ss_pred hcCC----------CCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhh
Confidence 6532 1123345666655555554 3556777777755 5677777776655432 111 1111
Q ss_pred HHHHcCCCc--------ccccCCCCHHHHHHHHHhCCCceeeecCH
Q 020223 236 NLESRGCAL--------LGINATPTLLAKEKLFLDQGWQQAVAWDM 273 (329)
Q Consensus 236 ~l~~~g~~l--------~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~ 273 (329)
.+...-... .....|++.++..+.+.++||+.+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 211 (223)
T TIGR01934 166 SIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSL 211 (223)
T ss_pred hhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeee
Confidence 111110000 01124567788888899999997765443
No 29
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=93.69 E-value=0.89 Score=40.55 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=78.6
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
.+.++-||||-==-+..|... +..+.=+|..++--.|.+.+.+.. .-+.+..-+||+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~--------------------~l~i~~~~~Dl~ 87 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEE--------------------GLDIRTRVADLN 87 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHT--------------------T-TEEEEE-BGC
T ss_pred CCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhc--------------------CceeEEEEecch
Confidence 478999999964447777665 566777777666666666665432 223667778888
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~ 245 (329)
+.+ ++ ..=-++++-+|++||+++...++++.+.+....|.+.+++.....+.+ ++|.+
T Consensus 88 ~~~----------~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~-----------p~~~~ 145 (192)
T PF03848_consen 88 DFD----------FP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY-----------PCPSP 145 (192)
T ss_dssp CBS-----------T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-------------SS-
T ss_pred hcc----------cc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC-----------CCCCC
Confidence 742 21 122478889999999999999999999886544444444333221112 33433
Q ss_pred cccCCCCHHHHHHHHHhCCCceee
Q 020223 246 GINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 246 ~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
.-.. ..+.+..+.|. ||+...
T Consensus 146 ~~f~-~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 146 FPFL-LKPGELREYYA--DWEILK 166 (192)
T ss_dssp -S---B-TTHHHHHTT--TSEEEE
T ss_pred CCcc-cCHHHHHHHhC--CCeEEE
Confidence 2111 23455666664 698754
No 30
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.19 E-value=3.4 Score=34.16 Aligned_cols=150 Identities=16% Similarity=0.100 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccc
Q 020223 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143 (329)
Q Consensus 64 ~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~ 143 (329)
.+.+.+.+++..... ...|+-+|||.=....-+... +..++=+|.-+.+-.+ .. .
T Consensus 8 ~~~~~~~~~~~~~~~-------~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----~~-------~---- 62 (161)
T PF13489_consen 8 AYADLLERLLPRLKP-------GKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----RN-------V---- 62 (161)
T ss_dssp CHHHHHHHHHTCTTT-------TSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----TT-------S----
T ss_pred HHHHHHHHHhcccCC-------CCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----hh-------h----
Confidence 345666666643222 478999999975444444433 4478888885544444 11 0
Q ss_pred cccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEEEEEee
Q 020223 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQ 222 (329)
Q Consensus 144 ~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~~e~ 222 (329)
.....+..+. . ...+.--++++-.|+.|++. ...+|+.+.+... +|.+++.++
T Consensus 63 --------------~~~~~~~~~~------~----~~~~~fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 63 --------------VFDNFDAQDP------P----FPDGSFDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp --------------EEEEEECHTH------H----CHSSSEEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEE
T ss_pred --------------hhhhhhhhhh------h----ccccchhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEc
Confidence 0111111110 0 12345678888899999993 8899999998775 455555554
Q ss_pred cCCCCHHHHHHHHHHHHcCCCcc--cccCCCCHHHHHHHHHhCCCceee
Q 020223 223 IHPDDAFGQQMIRNLESRGCALL--GINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 223 i~p~d~fg~~m~~~l~~~g~~l~--~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
... ....+ .+.+....-. +...|.+.++..+.++++||+.++
T Consensus 117 ~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 117 NRD-DPSPR----SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BTT-SHHHH----HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred CCc-chhhh----HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 432 22112 2222222221 333566889999999999999874
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.89 E-value=5.8 Score=38.19 Aligned_cols=179 Identities=9% Similarity=-0.026 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchh-HHHHHHHHHhccccchhh
Q 020223 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDK 138 (329)
Q Consensus 60 ~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~ 138 (329)
.|...|+..+.+.+...... ........|+-+|||-=.....|... +..++=||.-+ .++.-++.....
T Consensus 107 ~R~~~i~~~l~~~~~~~~~~-~~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~------ 176 (322)
T PLN02396 107 TRLAFIRSTLCRHFSKDPSS-AKPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMD------ 176 (322)
T ss_pred HHHHHHHHHHHHHhccchhh-ccCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 47777777665554332100 00001247999999977666556543 45677777743 333222221110
Q ss_pred hcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEE
Q 020223 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFF 218 (329)
Q Consensus 139 ~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i 218 (329)
+ ...+..++..|..+.. +....--++++-.|+..++.. ..+++.+.+...++..+
T Consensus 177 -~------------~~~~i~~~~~dae~l~----------~~~~~FD~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~l 231 (322)
T PLN02396 177 -P------------VTSTIEYLCTTAEKLA----------DEGRKFDAVLSLEVIEHVANP--AEFCKSLSALTIPNGAT 231 (322)
T ss_pred -C------------cccceeEEecCHHHhh----------hccCCCCEEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEE
Confidence 0 0235667777664421 111223355565688887754 46888888877444344
Q ss_pred EEeecCCCC-HHHHHH-HHHHHHcCCCc--ccccCCCCHHHHHHHHHhCCCceeeecCH
Q 020223 219 LYEQIHPDD-AFGQQM-IRNLESRGCAL--LGINATPTLLAKEKLFLDQGWQQAVAWDM 273 (329)
Q Consensus 219 ~~e~i~p~d-~fg~~m-~~~l~~~g~~l--~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~ 273 (329)
++..++... .+.... ....-.+..|- .....+.++++....+.++||+.++...+
T Consensus 232 iist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 232 VLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred EEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 555555431 111111 00000111111 11224678999999999999998876444
No 32
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=92.87 E-value=3.6 Score=39.00 Aligned_cols=129 Identities=12% Similarity=0.087 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH-HHHHHHHhccccchhhhccc
Q 020223 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVT 142 (329)
Q Consensus 64 ~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K~~~i~~~~~l~~~~g~~ 142 (329)
.++....++.+..+. ...||-||||.=...-.|........+|+=||..+-+ +.=++.+... .
T Consensus 49 il~~~~~~ia~~~~~-------~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~------~--- 112 (301)
T TIGR03438 49 ILERHADEIAAATGA-------GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD------Y--- 112 (301)
T ss_pred HHHHHHHHHHHhhCC-------CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh------C---
Confidence 444455555443332 3679999999766555554431115778888886433 3222223221 0
Q ss_pred ccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeecc-ccccChHHHHHHHHHHHhcCC-CcEEE-E
Q 020223 143 ASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECV-LIYLDPDSSRAIVGWASKTFS-TAVFF-L 219 (329)
Q Consensus 143 ~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egv-l~YL~~~~~~~ll~~la~~f~-~~~~i-~ 219 (329)
..-+...+.+|+.+...+ +. ..+ +.+.++++-|. +..+++++..++|+.+.+... +|.++ .
T Consensus 113 ----------p~~~v~~i~gD~~~~~~~---~~--~~~-~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 113 ----------PQLEVHGICADFTQPLAL---PP--EPA-AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ----------CCceEEEEEEcccchhhh---hc--ccc-cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 023456678899873111 11 121 34677777765 555899999999999998775 45543 2
Q ss_pred EeecC
Q 020223 220 YEQIH 224 (329)
Q Consensus 220 ~e~i~ 224 (329)
.|...
T Consensus 177 ~d~~~ 181 (301)
T TIGR03438 177 VDLVK 181 (301)
T ss_pred ccCCC
Confidence 44443
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.43 E-value=2.8 Score=42.14 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=68.8
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+-||||.=....-|... ...++=||.-..+-.+.+.... ...+.+++.+|+.+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~---------------------~~~~i~~~~~d~~~ 94 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING---------------------HYKNVKFMCADVTS 94 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc---------------------cCCceEEEEecccc
Confidence 47999999987666556544 2356666664333222222111 03467788888865
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecC
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIH 224 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~ 224 (329)
.. + .+..+..-++++..+++|++.+...++++.+.+.. |+|.+++.|...
T Consensus 95 ~~-~-------~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 95 PD-L-------NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred cc-c-------CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 21 1 23334567899999999999999999999998866 566666667543
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.17 E-value=9.2 Score=35.00 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=79.1
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
...|+-+|||.-.....+... .++.+++=+|.-+.+-.+.+ ..+..++.+|+.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~-~p~~~v~gvD~s~~~~~~a~--------------------------~~~~~~~~~d~~ 82 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARR-WPGAVIEALDSSPEMVAAAR--------------------------ERGVDARTGDVR 82 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHH--------------------------hcCCcEEEcChh
Confidence 368999999998887777654 24678888888443322221 112345566664
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHH---c-
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLES---R- 240 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~---~- 240 (329)
+.. ....--++++-.++.+++.. .++++.+.+.. |+|.+++-.+.+........+ ..+.. +
T Consensus 83 ~~~-----------~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~w~ 148 (255)
T PRK14103 83 DWK-----------PKPDTDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV-RALARREPWA 148 (255)
T ss_pred hCC-----------CCCCceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH-HHHhccCchh
Confidence 320 01234577788888898643 56677776655 556554422211111222221 22111 1
Q ss_pred ----CCCcccccCCCCHHHHHHHHHhCCCcee
Q 020223 241 ----GCALLGINATPTLLAKEKLFLDQGWQQA 268 (329)
Q Consensus 241 ----g~~l~~~~~~~t~~~~~~rf~~~Gw~~~ 268 (329)
+.++..-..+.+.+...+.+.++||++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 180 (255)
T PRK14103 149 KLLRDIPFRVGAVVQTPAGYAELLTDAGCKVD 180 (255)
T ss_pred HHhcccccccCcCCCCHHHHHHHHHhCCCeEE
Confidence 1222212234578899999999999743
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.95 E-value=0.42 Score=37.18 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=54.5
Q ss_pred EEEeCCCCchhhhhhcccC--CCCCEEEEecchh-HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 89 ILSLGAGFDTTYFQLQAEG--KAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 89 VV~LGaGlDTr~~RL~~~~--~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
|+-||||.=+....+.... .++.+++=||.-. .++.=++..... ..+.+++..|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~---------------------~~~~~~~~~D~~ 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED---------------------GPKVRFVQADAR 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT---------------------TTTSEEEESCTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc---------------------CCceEEEECCHh
Confidence 5778888754444433220 1346777777643 333222222110 226788999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEe-eccccccChHHHHHHHHHHHhcCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIA-ECVLIYLDPDSSRAIVGWASKTFS 213 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~-Egvl~YL~~~~~~~ll~~la~~f~ 213 (329)
+.. . . .....++++ -+++.|+++++..++++.+++...
T Consensus 60 ~l~---~------~-~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 60 DLP---F------S-DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLR 98 (101)
T ss_dssp CHH---H------H-SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEE
T ss_pred HCc---c------c-CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhC
Confidence 742 1 1 124556666 777999999999999999998653
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=91.64 E-value=9.3 Score=33.92 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=80.8
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||-=.....+......+.+++=+|..+.+..+.+ .+... + ...+..++.+|+.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~------------~~~~~~~~~~d~~ 113 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-------G------------LSGNVEFVQGDAE 113 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-------c------------cccCeEEEecccc
Confidence 57999999975554444433112467788887544333332 22211 0 0245677777876
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHH-------
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNL------- 237 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l------- 237 (329)
+.. +.....-++++-.++.+++ ....+++.+.+.. ++|.+++.|...+....-+...+.+
T Consensus 114 ~~~----------~~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (239)
T PRK00216 114 ALP----------FPDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPL 181 (239)
T ss_pred cCC----------CCCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHH
Confidence 632 1112223444444455544 3556777777766 4566666676555432111111100
Q ss_pred -HH-cCCC-------cccccCCCCHHHHHHHHHhCCCceeeecC
Q 020223 238 -ES-RGCA-------LLGINATPTLLAKEKLFLDQGWQQAVAWD 272 (329)
Q Consensus 238 -~~-~g~~-------l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d 272 (329)
.. .+.. ...+..+++.+...+.+.++||+......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 182 IGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 00 0000 01123456778888889999999876554
No 37
>PRK06202 hypothetical protein; Provisional
Probab=91.64 E-value=9.9 Score=34.23 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=82.7
Q ss_pred cceEEEeCCCCchhhhhhccc---CCCCCEEEEecch-hHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEe
Q 020223 86 KKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~---~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~ 161 (329)
...|+-||||.-.....|... ..++.+++=+|.- ++++.=++.+. ..+..++.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-----------------------~~~~~~~~ 117 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-----------------------RPGVTFRQ 117 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-----------------------cCCCeEEE
Confidence 367999999987665555321 0145688999984 44433222211 11222222
Q ss_pred ccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHH---
Q 020223 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLE--- 238 (329)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~--- 238 (329)
.|..+.. ...+.--++++-.++.++++++..++++.+.+... +.+++-|...+. .+-.+.....
T Consensus 118 ~~~~~l~----------~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~--~~~~~~~~~~~~~ 184 (232)
T PRK06202 118 AVSDELV----------AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSR--LAYALFWAGTRLL 184 (232)
T ss_pred Eeccccc----------ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCH--HHHHHHHHHHHHh
Confidence 3332211 11233456677778999999888889999887654 444444443332 2211111110
Q ss_pred H-----cCCCcccccCCCCHHHHHHHHHhCCCceeeec
Q 020223 239 S-----RGCALLGINATPTLLAKEKLFLDQGWQQAVAW 271 (329)
Q Consensus 239 ~-----~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~ 271 (329)
- ++-...++..++|.++..+.+.+ ||+....+
T Consensus 185 ~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 185 SRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQW 221 (232)
T ss_pred ccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecc
Confidence 0 11123455678889999999988 99976544
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=91.00 E-value=11 Score=34.65 Aligned_cols=148 Identities=13% Similarity=0.168 Sum_probs=79.9
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.-...+.+.....+..+++=+|. |+.++.=++.+.. .| ..+..++..|+.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-------~g-------------~~~v~~~~~d~~ 138 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-------AG-------------YTNVEFRLGEIE 138 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-------cC-------------CCCEEEEEcchh
Confidence 57889999985443333221013457888888 4444433333322 11 235667777765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
+.. +....--++++.+++...+. ..++++.+.+.. |+|.+++.+.....+ ....+.+...-.+...
T Consensus 139 ~l~----------~~~~~fD~Vi~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~ 205 (272)
T PRK11873 139 ALP----------VADNSVDVIISNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGE-LPEEIRNDAELYAGCV 205 (272)
T ss_pred hCC----------CCCCceeEEEEcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCC-CCHHHHHhHHHHhccc
Confidence 431 21122347788888876543 235666666655 567777777654332 1122222222221111
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeee
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVA 270 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~ 270 (329)
....+.++..+.+.++||..++.
T Consensus 206 ---~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 206 ---AGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred ---cCCCCHHHHHHHHHHCCCCceEE
Confidence 12346678888899999998754
No 39
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.22 E-value=2.1 Score=33.42 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=66.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC-
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL- 164 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL- 164 (329)
..|+-||||.=.....+... .++.+++=||. |++++.=++.+.+. + ..++.+++..|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~-------~------------~~~~i~~~~~d~~ 62 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARL-FPGARVVGVDISPEMLEIARERAAEE-------G------------LSDRITFVQGDAE 62 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHHHHHT-------T------------TTTTEEEEESCCH
T ss_pred CEEEEEcCcCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhc-------C------------CCCCeEEEECccc
Confidence 46999999987777777662 14666777777 45555444444221 1 167899999999
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeec-ccc-ccChHHHHHHHHHHHhcCCCcEEEEEe
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAEC-VLI-YLDPDSSRAIVGWASKTFSTAVFFLYE 221 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Eg-vl~-YL~~~~~~~ll~~la~~f~~~~~i~~e 221 (329)
...+ .....-++++-+ .+. |++.++..++++.+.+...++..++++
T Consensus 63 ~~~~-----------~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 63 FDPD-----------FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGTT-----------TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCcc-----------cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2211 123366777777 443 666688999999998877555444443
No 40
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.01 E-value=8.4 Score=33.91 Aligned_cols=135 Identities=11% Similarity=0.085 Sum_probs=78.2
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.-.....+... +..++=+|.. ..++.-++..... . -+.+...+|+.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~-~--------------------~~v~~~~~d~~ 87 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARE-N--------------------LPLRTDAYDIN 87 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHh-C--------------------CCceeEeccch
Confidence 57999999988877777654 3456666664 4444333333221 0 01344445553
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
.. .++ ...-++++-.++.+++++....+++.+.+.. |+|.+++.+...+.+. ..|.|.
T Consensus 88 ~~----------~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~----------~~~~~~ 146 (195)
T TIGR00477 88 AA----------ALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY----------PCHMPF 146 (195)
T ss_pred hc----------ccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC----------CCCCCc
Confidence 31 122 2346788888899999998899999998866 5566566554432210 112222
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeeec
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVAW 271 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~~ 271 (329)
+ ...+.++..+.|. ||+.....
T Consensus 147 ~---~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 147 S---FTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred C---ccCCHHHHHHHhC--CCeEEEee
Confidence 1 1235667777775 58876543
No 41
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=89.96 E-value=13 Score=32.76 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=79.0
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....|... +..+.=+|.. +.++.=++.+... + ..+.+.+..|+.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~-------~-------------~~~v~~~~~d~~ 88 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAE-------N-------------LDNLHTAVVDLN 88 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHc-------C-------------CCcceEEecChh
Confidence 57999999976666666654 4566667774 4443323333221 0 124566667765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
+.. ++ ..--++++-.++.|++++....+++.+.+.. |+|.+++.+.+.+++. . ...|-|+
T Consensus 89 ~~~----------~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~-------~~~~~~~ 149 (197)
T PRK11207 89 NLT----------FD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-P-------CTVGFPF 149 (197)
T ss_pred hCC----------cC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-C-------CCCCCCC
Confidence 531 21 1123666777889999999999999998877 4566555555544321 0 0012221
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeeecC
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~~d 272 (329)
..+.++..+.|. ||+.+...+
T Consensus 150 -----~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 150 -----AFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred -----ccCHHHHHHHhC--CCeEEEeeC
Confidence 124555555554 899876533
No 42
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=89.37 E-value=4 Score=39.47 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=100.4
Q ss_pred cceEEEeCC--CCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 020223 86 KKQILSLGA--GFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (329)
Q Consensus 86 ~~QVV~LGa--GlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~D 163 (329)
...|+-||| |-|..=|.-..- ....-+|+....+-+.+.+. .+... -.... ... ..-...++.+|
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry-~~~~~---~~~~~------~~~-~~f~a~f~~~D 129 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERY-KQLKK---RNNSK------QYR-FDFIAEFIAAD 129 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHH-HHHHT---STT-H------TSE-ECCEEEEEEST
T ss_pred CCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHH-HHhcc---ccccc------ccc-ccchhheeccc
Confidence 478999999 589998887543 34555666666666666655 11000 00000 000 01123566777
Q ss_pred CCCchhHHHHHHhCCCCCC--CCEEEEeecccccc--ChHHHHHHHHHHHhcCC-CcEEEEEeecCCCCHHHHHHHHHHH
Q 020223 164 LRDIQMLNEVINLANMDPS--LPTFIIAECVLIYL--DPDSSRAIVGWASKTFS-TAVFFLYEQIHPDDAFGQQMIRNLE 238 (329)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~--~PTl~i~Egvl~YL--~~~~~~~ll~~la~~f~-~~~~i~~e~i~p~d~fg~~m~~~l~ 238 (329)
.... .+... +.+. .==++.+.-.+.|+ +++.++.+|+.+++... +|.|+.- .+. +....+.+.
T Consensus 130 ~f~~-~l~~~-----~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT-~~d-----~~~i~~~l~ 197 (331)
T PF03291_consen 130 CFSE-SLREK-----LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT-TPD-----SDEIVKRLR 197 (331)
T ss_dssp TCCS-HHHCT-----SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE-EE------HHHHHCCHH
T ss_pred cccc-hhhhh-----ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE-ecC-----HHHHHHHHH
Confidence 6652 33332 2222 33577778888887 67788889999999884 5555432 111 223333332
Q ss_pred H---------cCCCc-------------ccc-------------cCCC-CHHHHHHHHHhCCCceeeecCHHHHHHhCCC
Q 020223 239 S---------RGCAL-------------LGI-------------NATP-TLLAKEKLFLDQGWQQAVAWDMLRVYSTFIN 282 (329)
Q Consensus 239 ~---------~g~~l-------------~~~-------------~~~~-t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~ 282 (329)
+ .|.++ .|. ..|- ..+...+.+.++|+..+...+..++|+.+.+
T Consensus 198 ~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~ 277 (331)
T PF03291_consen 198 EKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKN 277 (331)
T ss_dssp C-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCC
T ss_pred hhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhcc
Confidence 2 01111 110 1122 2466777889999999999999999985443
Q ss_pred ----HHHHHHhhhccCCCh
Q 020223 283 ----PQERRRIERLELFDE 297 (329)
Q Consensus 283 ----~~er~ri~~lE~fDE 297 (329)
..-..+...||..+.
T Consensus 278 ~~~~~~l~~~~~~l~~~~~ 296 (331)
T PF03291_consen 278 KYEKRSLLERMKALEKRPG 296 (331)
T ss_dssp CCHCHHHHHCHGGG--SHH
T ss_pred CchhhHHHHHHHhhcCCCC
Confidence 334566666766543
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=89.37 E-value=7.3 Score=36.53 Aligned_cols=134 Identities=15% Similarity=0.194 Sum_probs=78.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....|... +..++=+|.....-.+.+ ..... .-+.+.+..|+.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~---------------------~l~v~~~~~D~~ 177 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKE---------------------NLNIRTGLYDIN 177 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHc---------------------CCceEEEEechh
Confidence 57999999986666666554 356666676433322222 22210 114566666765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
+.. + +..--++++.+++++++++....+++.+.+... +|.+++.+.+...+. .++.
T Consensus 178 ~~~----------~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~------------~~~~ 234 (287)
T PRK12335 178 SAS----------I-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY------------PCPM 234 (287)
T ss_pred ccc----------c-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC------------CCCC
Confidence 521 1 123458889999999999999999999988774 565455444433221 1221
Q ss_pred ccccCCCCHHHHHHHHHhCCCceeee
Q 020223 245 LGINATPTLLAKEKLFLDQGWQQAVA 270 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~~~~~ 270 (329)
+ .....+.++..+.|. +|+.+..
T Consensus 235 p-~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 235 P-FSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred C-CCcccCHHHHHHHhC--CCEEEEE
Confidence 1 112245666666665 4887654
No 44
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=86.97 E-value=4.3 Score=34.62 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=63.1
Q ss_pred CCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHH
Q 020223 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQM 233 (329)
Q Consensus 155 ~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m 233 (329)
.+.+++..|..+.. +..+.--++++-.++.+++ +-.+.++-+.+.. |+|.+++.|...|+..+.+.+
T Consensus 26 ~~i~~~~~d~~~lp----------~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~ 93 (160)
T PLN02232 26 KCIEWIEGDAIDLP----------FDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM 93 (160)
T ss_pred CceEEEEechhhCC----------CCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH
Confidence 46778888876642 2233334555666777774 3456667776655 677888888777665444332
Q ss_pred HHHHHH-cCCC--------------cccccCCCCHHHHHHHHHhCCCceeee
Q 020223 234 IRNLES-RGCA--------------LLGINATPTLLAKEKLFLDQGWQQAVA 270 (329)
Q Consensus 234 ~~~l~~-~g~~--------------l~~~~~~~t~~~~~~rf~~~Gw~~~~~ 270 (329)
...... .+.| ..++..+++.++..+.++++||+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 94 QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 221110 1111 123357788999999999999987753
No 45
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=86.33 E-value=1.6 Score=40.26 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=90.4
Q ss_pred eEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 88 QILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 88 QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
.|.-+|||-=...|-|.... .+++..|-.|+.+-. ..+++++.. . ...+.+.--+||..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A---i~~vk~~~~------~-----------~e~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA---IELVKKSSG------Y-----------DESRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH---HHHHHhccc------c-----------chhhhcccceeccc
Confidence 58889999988888876542 345999999995321 123333221 1 13455666778888
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCC---HHH--HHHHHHHHHc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDD---AFG--QQMIRNLESR 240 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d---~fg--~~m~~~l~~~ 240 (329)
.+ +........+|...-+ -||-=++|+.-...|..+.+.. |+|.++.=|+-.-+- .|. +.+..|+--|
T Consensus 134 ~~-~~~~~~~~svD~it~I-----FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361|consen 134 PS-LKEPPEEGSVDIITLI-----FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred hh-ccCCCCcCccceEEEE-----EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence 54 3333333334433333 4455578999999999999987 455555546544321 111 2222233112
Q ss_pred --CCCcccccCCCCHHHHHHHHHhCCCceee
Q 020223 241 --GCALLGINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 241 --g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
|++. =|.+.+...+.|.++||..++
T Consensus 208 gDGT~~----YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 208 GDGTRA----YFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred cCCcee----eeccHHHHHHHHHhcccchhc
Confidence 3332 234778889999999998764
No 46
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=84.13 E-value=20 Score=29.79 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=69.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
...|+-||||.=...+.|.....++.+++=||.-+.+-.+.+...+. .+ .++++++..|+.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~------~~-------------~~ni~~~~~d~~ 64 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE------LG-------------LDNIEFIQGDIE 64 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH------TT-------------STTEEEEESBTT
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc------cc-------------ccccceEEeehh
Confidence 46899999998777777762112567788888865554444443221 11 348999999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeec
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQI 223 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i 223 (329)
+.+. . +. ..--++++-+++.+++... .+++.+.+.. ++|.+++.+..
T Consensus 65 ~l~~-------~-~~-~~~D~I~~~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 DLPQ-------E-LE-EKFDIIISNGVLHHFPDPE--KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp CGCG-------C-SS-TTEEEEEEESTGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccc-------c-cC-CCeeEEEEcCchhhccCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence 8432 1 22 4556788889998887653 6667766655 45666665554
No 47
>PLN02366 spermidine synthase
Probab=84.04 E-value=8.7 Score=36.76 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=62.5
Q ss_pred cceEEEeCCCCchhhhhhccc-CCCCCEEEEecchhHHHHHHHHHhcc------ccchhhhcccccccccCCcccCCCeE
Q 020223 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETH------GELKDKVGVTASISQAKGEVLGDNYK 158 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~~------~~l~~~~g~~~~~~~~~~~l~~~~y~ 158 (329)
.+.|+.+|+|-=.....+... +...+..+|+| |+|++.=++.+... |.+.-..+...... .....++|.
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l---~~~~~~~yD 167 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL---KNAPEGTYD 167 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHH---hhccCCCCC
Confidence 467999999865554444332 12467789999 66777666655431 11111111000000 001134688
Q ss_pred EEeccCCCch---------hHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC
Q 020223 159 LLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS 213 (329)
Q Consensus 159 ~v~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~ 213 (329)
+|-+|+.+.. .+-+.+.. -+.++. . ++..+-..++.++....+++.+.+.|+
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~-~L~pgG-v-lv~q~~s~~~~~~~~~~i~~tl~~~F~ 228 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVAR-ALRPGG-V-VCTQAESMWLHMDLIEDLIAICRETFK 228 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHH-hcCCCc-E-EEECcCCcccchHHHHHHHHHHHHHCC
Confidence 8888877631 11111221 133332 2 333333456677888888888888884
No 48
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=83.07 E-value=30 Score=32.44 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=94.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHH-HHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK-AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K-~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||-=....++... -++++.=|.+.+.+..- ++.+.+. |- .++.+++-+|.+
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~-------gl------------~~~v~v~~~D~~ 122 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREA-------GL------------EDRVEVRLQDYR 122 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCS-------TS------------SSTEEEEES-GG
T ss_pred CEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhc-------CC------------CCceEEEEeecc
Confidence 46999999999999888776 26777777775443332 2233331 21 457777888887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHH-------HHHHHHH
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFG-------QQMIRNL 237 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg-------~~m~~~l 237 (329)
+.+. .+| -+++=+++-.+.++.-..+++.+.+.. |+|.+++-....+..... ..|.+.+
T Consensus 123 ~~~~--------~fD-----~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi 189 (273)
T PF02353_consen 123 DLPG--------KFD-----RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI 189 (273)
T ss_dssp G-----------S-S-----EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT
T ss_pred ccCC--------CCC-----EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEee
Confidence 6421 344 255557788888888999999999988 455554433333321111 2233332
Q ss_pred HHcCCCcccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCCC------HHHHHHhhhccCCCh
Q 020223 238 ESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFIN------PQERRRIERLELFDE 297 (329)
Q Consensus 238 ~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~------~~er~ri~~lE~fDE 297 (329)
++|- ..|+++.....+.+.||++....++..-|...+- .+.+.+|..+ |||
T Consensus 190 ------FPgg-~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~--~~~ 246 (273)
T PF02353_consen 190 ------FPGG-YLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANREEIIAL--FDE 246 (273)
T ss_dssp ------STTS----BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH--SHH
T ss_pred ------CCCC-CCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh--cCH
Confidence 2332 2467788888888999999888877777654221 2344445444 775
No 49
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=83.04 E-value=27 Score=33.97 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=95.4
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..-.|-+|+|.=+..=++... .+.+.-++.|+|.+++.+..+- .....+.+|..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-------------------------~gV~~v~gdmf 231 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-------------------------PGVEHVAGDMF 231 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-------------------------CCcceeccccc
Confidence 567899999987766565554 6889999999999998777542 11345667765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEEEEEeecCCC-CHHH---------HHHH
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPD-DAFG---------QQMI 234 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~~e~i~p~-d~fg---------~~m~ 234 (329)
+. + |.. -++...-||-=++.+...++|+.|.+.+| +|.+++-|.+.|. +.++ .-|.
T Consensus 232 q~--~----------P~~-daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~l 298 (342)
T KOG3178|consen 232 QD--T----------PKG-DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLL 298 (342)
T ss_pred cc--C----------CCc-CeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHH
Confidence 52 1 111 28888999999999999999999999885 6788889998884 3332 1122
Q ss_pred HHH-HHcCCCcccccCCCCHHHHHHHHHhCCCceeeec
Q 020223 235 RNL-ESRGCALLGINATPTLLAKEKLFLDQGWQQAVAW 271 (329)
Q Consensus 235 ~~l-~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~ 271 (329)
..+ .+-|-. .+..+-...+.+.||.+....
T Consensus 299 m~~~~~~Gke-------rt~~e~q~l~~~~gF~~~~~~ 329 (342)
T KOG3178|consen 299 MLTQTSGGKE-------RTLKEFQALLPEEGFPVCMVA 329 (342)
T ss_pred HHHHhcccee-------ccHHHHHhcchhhcCceeEEE
Confidence 222 222322 244555566678899887643
No 50
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=83.04 E-value=22 Score=34.13 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=88.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
+.|+-+|||-==..||+...+ .-.++=+|--...-..-+.+++ .+|. ....+.++.-+.+
T Consensus 117 k~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~------~lg~------------~~~~~~lplgvE~ 176 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKH------FLGQ------------DPPVFELPLGVED 176 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHH------HhCC------------CccEEEcCcchhh
Confidence 679999999877789998763 3456777754444333334443 3332 2345555544433
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~ 245 (329)
+. . +. .|| ++++-|||+.+... -..|+.+.+.. ++|.+++=..+.+.+.- ..+. =..+-..++
T Consensus 177 Lp---~-~~--~FD-----tVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~-~~L~--P~~rYa~m~ 240 (315)
T PF08003_consen 177 LP---N-LG--AFD-----TVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDEN-TVLV--PEDRYAKMR 240 (315)
T ss_pred cc---c-cC--CcC-----EEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCc-eEEc--cCCcccCCC
Confidence 22 1 11 344 68889999997543 34455555544 45655433333332210 0000 012344455
Q ss_pred cccCCCCHHHHHHHHHhCCCceeeecCH
Q 020223 246 GINATPTLLAKEKLFLDQGWQQAVAWDM 273 (329)
Q Consensus 246 ~~~~~~t~~~~~~rf~~~Gw~~~~~~d~ 273 (329)
++---||+......+..+||+.+++.|.
T Consensus 241 nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 241 NVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 5555689999999999999999988765
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=82.54 E-value=34 Score=30.19 Aligned_cols=169 Identities=9% Similarity=-0.037 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHHHHHHHHhccccchhh
Q 020223 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDK 138 (329)
Q Consensus 60 ~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~ 138 (329)
.|...+...+... ..... ...|+.+|||.-+....+... ...++-+|.. .+++.-++.+....
T Consensus 28 ~~~~~i~~~~~~~-~~~~~-------~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~----- 91 (224)
T TIGR01983 28 LRLDYIRDTIRKN-KKPLF-------GLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDP----- 91 (224)
T ss_pred HHHHHHHHHHHhc-ccCCC-------CCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcC-----
Confidence 4666666555433 11111 357999999987776666544 2346666663 33343333333210
Q ss_pred hcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEE
Q 020223 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVF 217 (329)
Q Consensus 139 ~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~ 217 (329)
..+.+++..|+.+. ... .++..-++++-.++.+... ...+++.+.+... +|.+
T Consensus 92 ---------------~~~~~~~~~d~~~~------~~~---~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~~gG~l 145 (224)
T TIGR01983 92 ---------------LLKIEYRCTSVEDL------AEK---GAKSFDVVTCMEVLEHVPD--PQAFIRACAQLLKPGGIL 145 (224)
T ss_pred ---------------CCceEEEeCCHHHh------hcC---CCCCccEEEehhHHHhCCC--HHHHHHHHHHhcCCCcEE
Confidence 11344555554331 110 1233456666666777654 3467777777664 5554
Q ss_pred EEEeecCCCC-HH-HHHHHHHHHHcCCCcc--cccCCCCHHHHHHHHHhCCCceeeec
Q 020223 218 FLYEQIHPDD-AF-GQQMIRNLESRGCALL--GINATPTLLAKEKLFLDQGWQQAVAW 271 (329)
Q Consensus 218 i~~e~i~p~d-~f-g~~m~~~l~~~g~~l~--~~~~~~t~~~~~~rf~~~Gw~~~~~~ 271 (329)
++.+ .+... .+ ...+...+.....+-. ....|.+.++..+.+.++||+.++..
T Consensus 146 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 146 FFST-INRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred EEEe-cCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 4433 22211 11 1111111111111110 11245577888889999999987755
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=82.19 E-value=8.7 Score=34.45 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=60.4
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
...++-+|||-=..--+|... ...+..+|+--..+-.. ++.+.. .++..++-.|+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~A-r~Rl~~----------------------~~~V~~~~~dvp 99 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARA-RERLAG----------------------LPHVEWIQADVP 99 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHH-HHHTTT-----------------------SSEEEEES-TT
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHH-HHhcCC----------------------CCCeEEEECcCC
Confidence 578999999988888788655 33444444444444444 444443 457889999997
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccCh-HHHHHHHHHHHhcC-CCcEEEEEe
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTF-STAVFFLYE 221 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~-~~~~~ll~~la~~f-~~~~~i~~e 221 (329)
+. + . ...|| .++++| |++||++ ++..++++.+.+.. |+|.+|+-.
T Consensus 100 ~~-~-P----~~~FD----LIV~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 100 EF-W-P----EGRFD----LIVLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp T---------SS-EE----EEEEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-C-C----CCCee----EEEEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 63 1 1 11233 556665 9999986 78888999988866 566665543
No 53
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=81.48 E-value=39 Score=30.15 Aligned_cols=149 Identities=9% Similarity=-0.006 Sum_probs=74.1
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH-HHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+.+|||.-.....+... ...++-+|..... +.-++.+... ..+..++.+|..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~---------------------~~~~~~~~~~~~ 105 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALES---------------------GLKIDYRQTTAE 105 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHc---------------------CCceEEEecCHH
Confidence 56999999987766666544 3456666664333 3222222210 113344555544
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEEEEEeecCCCC-HHH-HHHHHHHHHcCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDD-AFG-QQMIRNLESRGC 242 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~~e~i~p~d-~fg-~~m~~~l~~~g~ 242 (329)
+. +.. ..+.--++++-.++-+++. ...+++.+.+... +|.+ ++....... ... ..+.......+.
T Consensus 106 ~~------~~~---~~~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l-~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (233)
T PRK05134 106 EL------AAE---HPGQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLV-FFSTLNRNLKSYLLAIVGAEYVLRML 173 (233)
T ss_pred Hh------hhh---cCCCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEE-EEEecCCChHHHHHHHhhHHHHhhhc
Confidence 32 111 1123344555455555543 3467777777664 4554 444332211 011 111111111111
Q ss_pred Cc--ccccCCCCHHHHHHHHHhCCCceeeec
Q 020223 243 AL--LGINATPTLLAKEKLFLDQGWQQAVAW 271 (329)
Q Consensus 243 ~l--~~~~~~~t~~~~~~rf~~~Gw~~~~~~ 271 (329)
+. .....|.+.++..+.+..+||+.++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 174 PKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 11 112346688889999999999988664
No 54
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=81.20 E-value=43 Score=32.25 Aligned_cols=136 Identities=13% Similarity=0.016 Sum_probs=78.1
Q ss_pred HHHH--HHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhccc---CCCCCEEEEecch-hHHHHHHHHHh-cc
Q 020223 60 ARWA--ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDFI-EVTSKKAALIE-TH 132 (329)
Q Consensus 60 ~R~~--~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~---~~~~~~~~EvD~p-~vi~~K~~~i~-~~ 132 (329)
.|+- .+++...+..+.-+. ...+|-||||.-+---.|... ....++|+=||.. +.++.=.+.|. ..
T Consensus 56 tr~E~~iL~~~~~~Ia~~i~~-------~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~ 128 (319)
T TIGR03439 56 TNDEIEILKKHSSDIAASIPS-------GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN 128 (319)
T ss_pred hHHHHHHHHHHHHHHHHhcCC-------CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc
Confidence 4543 344444444444332 357999999954332222111 0246789988886 34433333333 10
Q ss_pred ccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeec-cccccChHHHHHHHHHHHh-
Q 020223 133 GELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAEC-VLIYLDPDSSRAIVGWASK- 210 (329)
Q Consensus 133 ~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Eg-vl~YL~~~~~~~ll~~la~- 210 (329)
+ ..=..+-+.+|+.+.- ..|.. ...++.|.+|++-| .+--++++++.++|+.+++
T Consensus 129 ------~-------------p~l~v~~l~gdy~~~l---~~l~~-~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~ 185 (319)
T TIGR03439 129 ------F-------------SHVRCAGLLGTYDDGL---AWLKR-PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLAT 185 (319)
T ss_pred ------C-------------CCeEEEEEEecHHHHH---hhccc-ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHh
Confidence 0 0123344777887741 11221 11235678999988 7788999999999999988
Q ss_pred cC-CCcEEE-EEeecCC
Q 020223 211 TF-STAVFF-LYEQIHP 225 (329)
Q Consensus 211 ~f-~~~~~i-~~e~i~p 225 (329)
.. |++.++ .+|..+.
T Consensus 186 ~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 186 ALSPSDSFLIGLDGCKD 202 (319)
T ss_pred hCCCCCEEEEecCCCCC
Confidence 55 555554 4787653
No 55
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=81.08 E-value=11 Score=29.82 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=47.4
Q ss_pred cccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcccccC----CC-CHHHHHHHHHhCCCc
Q 020223 192 VLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINA----TP-TLLAKEKLFLDQGWQ 266 (329)
Q Consensus 192 vl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~~~~~----~~-t~~~~~~rf~~~Gw~ 266 (329)
||+|=+++++.++|+.++++..+..++.|-+-.| ++.-+...|.-+++-.. || ..++..+.+.++||+
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~~~~ifTfAP~T~-------~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~ 76 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTRGSLIFTFAPRTP-------LLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWR 76 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhccCcEEEEECCCCH-------HHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCe
Confidence 6888899999999999999876666666755443 23333445555555433 33 234556667889998
Q ss_pred eee
Q 020223 267 QAV 269 (329)
Q Consensus 267 ~~~ 269 (329)
...
T Consensus 77 ~~r 79 (97)
T PF07109_consen 77 IGR 79 (97)
T ss_pred eee
Confidence 765
No 56
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=80.58 E-value=20 Score=26.30 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=52.9
Q ss_pred EeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhH
Q 020223 91 SLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQML 170 (329)
Q Consensus 91 ~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l 170 (329)
-+|||.=...-.|... ++..++=+|..+-.-.+.+.... ..+..++..|..+.
T Consensus 2 diG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~----------------------~~~~~~~~~d~~~l--- 54 (95)
T PF08241_consen 2 DIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLK----------------------NEGVSFRQGDAEDL--- 54 (95)
T ss_dssp EET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTT----------------------TSTEEEEESBTTSS---
T ss_pred EecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccc----------------------ccCchheeehHHhC---
Confidence 4778755444445443 35666666665444333333322 23444777887775
Q ss_pred HHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCc
Q 020223 171 NEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA 215 (329)
Q Consensus 171 ~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~ 215 (329)
.+..+.=.++++-.++.|+ +...++++-+.+...++
T Consensus 55 -------~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 55 -------PFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPG 90 (95)
T ss_dssp -------SS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEE
T ss_pred -------ccccccccccccccceeec--cCHHHHHHHHHHHcCcC
Confidence 2444555688999999999 77788888888876443
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=77.51 E-value=66 Score=30.49 Aligned_cols=226 Identities=18% Similarity=0.238 Sum_probs=137.4
Q ss_pred hhhcCC-CCchhHHhhhcCCCc------CCcccccchhHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhh
Q 020223 29 CVKKGY-MKDDYIHLFVRRPVR------RSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYF 101 (329)
Q Consensus 29 a~~~gy-~~Dp~a~~f~~~~~r------r~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~ 101 (329)
+++..| ..++|.+.|+.+... ..|-+..+ -+-...++.+.+.+ .-.++ ..|+-+|||-=...-
T Consensus 19 ~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl-~L~~G--------~~lLDiGCGWG~l~~ 88 (283)
T COG2230 19 NIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKL-GLKPG--------MTLLDIGCGWGGLAI 88 (283)
T ss_pred hhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhc-CCCCC--------CEEEEeCCChhHHHH
Confidence 334444 467888888864211 11222111 13334455554443 33333 579999999988888
Q ss_pred hhcccCCCCCEEEEecchhHHHHHH-HHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCC
Q 020223 102 QLQAEGKAPHLYVELDFIEVTSKKA-ALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 180 (329)
Q Consensus 102 RL~~~~~~~~~~~EvD~p~vi~~K~-~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d 180 (329)
+.... -+++++=|++.+.+..-. +.+.+. |- ..+.+++-.|.++.+.. ||
T Consensus 89 ~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~-------gl------------~~~v~v~l~d~rd~~e~--------fD 139 (283)
T COG2230 89 YAAEE--YGVTVVGVTLSEEQLAYAEKRIAAR-------GL------------EDNVEVRLQDYRDFEEP--------FD 139 (283)
T ss_pred HHHHH--cCCEEEEeeCCHHHHHHHHHHHHHc-------CC------------CcccEEEeccccccccc--------cc
Confidence 87765 389999999965554433 335442 21 45788889999886321 43
Q ss_pred CCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEEEEEeecCCCC---HHHHHHHHHHHHcCCCcccccCCCCHHHH
Q 020223 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDD---AFGQQMIRNLESRGCALLGINATPTLLAK 256 (329)
Q Consensus 181 ~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~~e~i~p~d---~fg~~m~~~l~~~g~~l~~~~~~~t~~~~ 256 (329)
=+++=|.+-|+..+.....++.+.+..+ +|.+++.....+.. .+.....+.+ ++|- ..|++...
T Consensus 140 -----rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yi------FPgG-~lPs~~~i 207 (283)
T COG2230 140 -----RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYI------FPGG-ELPSISEI 207 (283)
T ss_pred -----eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhC------CCCC-cCCCHHHH
Confidence 2678889999999999999999999885 56776666665542 2333333322 2332 34677777
Q ss_pred HHHHHhCCCceeeecCHHHHHHhCCC------HHHHHHhhhccCCChHHHHHHHhcCcE
Q 020223 257 EKLFLDQGWQQAVAWDMLRVYSTFIN------PQERRRIERLELFDEFEEWHMMQEHYC 309 (329)
Q Consensus 257 ~~rf~~~Gw~~~~~~d~~~~~~~~l~------~~er~ri~~lE~fDE~Ee~~l~~~HY~ 309 (329)
.....++||.+.....+..-|.+-+. .+.+.++..+ +|| ++..+-.||.
T Consensus 208 ~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~~--~~e--~~~r~w~~yl 262 (283)
T COG2230 208 LELASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIAL--YDE--RFYRMWELYL 262 (283)
T ss_pred HHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHHH--hhH--HHHHHHHHHH
Confidence 77789999998776555544443221 2344444444 554 5555555553
No 58
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=76.09 E-value=27 Score=25.28 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=56.1
Q ss_pred EEEeCCCCchhhhhhcccCCCCCEEEEecchh--HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 89 ILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE--VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 89 VV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~--vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
|+.+|||.-.....+... .+..++=+|..+ +...|+ .... + ...+..++..|..+
T Consensus 2 ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~-~~~~--------~------------~~~~~~~~~~~~~~ 58 (107)
T cd02440 2 VLDLGCGTGALALALASG--PGARVTGVDISPVALELARK-AAAA--------L------------LADNVEVLKGDAEE 58 (107)
T ss_pred eEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHH-HHhc--------c------------cccceEEEEcChhh
Confidence 788999987766655542 344555555443 333332 1111 0 13456777777776
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEE
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVF 217 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~ 217 (329)
... .....+-++++-.++.++ .+....+++.+.+... +|.+
T Consensus 59 ~~~---------~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~ 100 (107)
T cd02440 59 LPP---------EADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVL 100 (107)
T ss_pred hcc---------ccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEE
Confidence 421 123456778887777766 6677888888777664 4544
No 59
>PRK00536 speE spermidine synthase; Provisional
Probab=75.66 E-value=36 Score=31.81 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=73.8
Q ss_pred cceEEEeCCCCchhhhh--hcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCC--cccCCCeEEEe
Q 020223 86 KKQILSLGAGFDTTYFQ--LQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKG--EVLGDNYKLLP 161 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~R--L~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~--~l~~~~y~~v~ 161 (329)
++.|+++|+| |--.-| |+.+ ..+..+|+|- +|++.=++.++. +...+. ++....-.. .-..++|-.|=
T Consensus 73 pk~VLIiGGG-DGg~~REvLkh~--~~v~mVeID~-~Vv~~~k~~lP~---~~~~~~-DpRv~l~~~~~~~~~~~fDVII 144 (262)
T PRK00536 73 LKEVLIVDGF-DLELAHQLFKYD--THVDFVQADE-KILDSFISFFPH---FHEVKN-NKNFTHAKQLLDLDIKKYDLII 144 (262)
T ss_pred CCeEEEEcCC-chHHHHHHHCcC--CeeEEEECCH-HHHHHHHHHCHH---HHHhhc-CCCEEEeehhhhccCCcCCEEE
Confidence 6889999999 766555 4433 4789999997 677776666554 222221 111111001 11136799999
Q ss_pred ccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCC
Q 020223 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (329)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~ 214 (329)
+|.......-+.+..+ +.+ --+++..+-..|+.++....+.+.+.+.|+.
T Consensus 145 vDs~~~~~fy~~~~~~-L~~--~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~ 194 (262)
T PRK00536 145 CLQEPDIHKIDGLKRM-LKE--DGVFISVAKHPLLEHVSMQNALKNMGDFFSI 194 (262)
T ss_pred EcCCCChHHHHHHHHh-cCC--CcEEEECCCCcccCHHHHHHHHHHHHhhCCc
Confidence 9965544443333331 222 2367777778888999999999999999985
No 60
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=75.47 E-value=48 Score=30.27 Aligned_cols=112 Identities=12% Similarity=0.117 Sum_probs=70.2
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHH-HHHHHhccccchhhhcccccccccCCcccCCCeE-EEecc
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK-KAALIETHGELKDKVGVTASISQAKGEVLGDNYK-LLPVD 163 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~-K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~-~v~~D 163 (329)
+.-|+-+|||--+-+=-.++. +++++.-+|-.+.++. =.+.+++. .+.++. +|-+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~--------------------k~~~~~~fvva~ 134 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEK--------------------KPLQVERFVVAD 134 (252)
T ss_pred ccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhc--------------------cCcceEEEEeec
Confidence 567899999987775445544 6788888998655442 11222221 144565 88888
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHHH
Q 020223 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFG 230 (329)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~fg 230 (329)
.++..+| .+.-+|.=.-||+|+ +.+...+.|+-+.+.. |+|.++..|.+.....|=
T Consensus 135 ge~l~~l----~d~s~DtVV~TlvLC-------Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~ 191 (252)
T KOG4300|consen 135 GENLPQL----ADGSYDTVVCTLVLC-------SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW 191 (252)
T ss_pred hhcCccc----ccCCeeeEEEEEEEe-------ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHH
Confidence 8886554 222355444455443 4566777777777766 677888889887654443
No 61
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=73.08 E-value=8.8 Score=37.74 Aligned_cols=117 Identities=14% Similarity=0.227 Sum_probs=66.2
Q ss_pred cceEEEeCCCCchhhhhh--cccCCCCCEEEEecchhHHHHHH--HHHhccccchhhhccccccc-ccCC-----cccCC
Q 020223 86 KKQILSLGAGFDTTYFQL--QAEGKAPHLYVELDFIEVTSKKA--ALIETHGELKDKVGVTASIS-QAKG-----EVLGD 155 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL--~~~~~~~~~~~EvD~p~vi~~K~--~~i~~~~~l~~~~g~~~~~~-~~~~-----~l~~~ 155 (329)
..-|+.||+| |-.+.|= +.++...++-+|+| |.+++.-+ ..+++-.+ ..+ .++.++ .++. .-..+
T Consensus 290 a~~vLvlGGG-DGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~N~--~sf-~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 290 ARSVLVLGGG-DGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRALNQ--GSF-SDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cceEEEEcCC-chHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhhcc--CCc-cCCeeEEEeccHHHHHHhhcc
Confidence 5679999999 9998883 33323455666666 67877654 44443110 001 111111 1111 11256
Q ss_pred CeEEEeccCCCchh----------HHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHh
Q 020223 156 NYKLLPVDLRDIQM----------LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (329)
Q Consensus 156 ~y~~v~~DL~~~~~----------l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (329)
.|..|-+||.|++. +-..+.. .+ ..--+++.+.-..|.+|+.-..+++.+.+
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~-~l--~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSR-HL--AETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHH-hc--CcCceEEEecCCCccCCceeeeehhHHHh
Confidence 78888888888642 1112221 12 12246777888888888888888887765
No 62
>PRK05785 hypothetical protein; Provisional
Probab=72.61 E-value=73 Score=28.70 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=24.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhH
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEV 121 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~v 121 (329)
..|+-+|||-=.....+... .+..++=||+-+-
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~--~~~~v~gvD~S~~ 85 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKV--FKYYVVALDYAEN 85 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHh--cCCEEEEECCCHH
Confidence 58999999988777777654 1467888998443
No 63
>PRK00811 spermidine synthase; Provisional
Probab=71.52 E-value=38 Score=31.79 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=66.1
Q ss_pred cceEEEeCCCCchhhhhhccc-CCCCCEEEEecchhHHHHHHHHHhc-------cccchhhhcccccccccCCcccCCCe
Q 020223 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIET-------HGELKDKVGVTASISQAKGEVLGDNY 157 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~-------~~~l~~~~g~~~~~~~~~~~l~~~~y 157 (329)
.+.|+.||||-=.....+... +...+..+|+|-. +++.=++.+.. .|.+.-..+...... .-..++|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l----~~~~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV----AETENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchHHHH----hhCCCcc
Confidence 467899999865554444332 2356889999975 44444444432 111111111100000 0024678
Q ss_pred EEEeccCCCch---------hHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcE
Q 020223 158 KLLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV 216 (329)
Q Consensus 158 ~~v~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~ 216 (329)
.+|=+|+.+.. .+-+.+.. -+.++. .+ +..+-..++.++...++++.+.+.|+...
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~-~L~~gG-vl-v~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKR-ALKEDG-IF-VAQSGSPFYQADEIKDMHRKLKEVFPIVR 216 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHH-hcCCCc-EE-EEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence 88988887641 11111121 233332 33 34455566778889999999999998743
No 64
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=71.30 E-value=65 Score=29.85 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=39.4
Q ss_pred CCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEE
Q 020223 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (329)
Q Consensus 155 ~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~ 220 (329)
.+.++...|+.+.. .....--++++-.|++|++++...++++.+.+...+|.+++.
T Consensus 185 ~~V~F~~~dl~~~~----------~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 185 ERVRFAKHNLLAES----------PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CcCEEeeccCCCCC----------CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45677777777632 112334577788899999999999999999987755444443
No 65
>PRK08317 hypothetical protein; Provisional
Probab=71.00 E-value=72 Score=27.91 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=76.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHH--HHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTS--KKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~--~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
..|+-+|||.-.....+.....++..++=+|..+.+. .|++ ... ...+.+++..|.
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~---------------------~~~~~~~~~~d~ 78 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAG---------------------LGPNVEFVRGDA 78 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhC---------------------CCCceEEEeccc
Confidence 5799999998776655544311345666666643322 2221 111 134667777787
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeec------CCC-CHHHHHHHHH
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQI------HPD-DAFGQQMIRN 236 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i------~p~-d~fg~~m~~~ 236 (329)
.+.. +....--++++-.++.+++. ...+++.+.+.. |+|.+++.++. .+. ...-+.+...
T Consensus 79 ~~~~----------~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (241)
T PRK08317 79 DGLP----------FPDGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF 146 (241)
T ss_pred ccCC----------CCCCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH
Confidence 6532 22234567777778888764 455677777655 45665555432 111 1111222222
Q ss_pred HHHcCCCcccccCCCCHHHHHHHHHhCCCceee
Q 020223 237 LESRGCALLGINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 237 l~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
+...+ ....+.....+.+.++||..+.
T Consensus 147 ~~~~~------~~~~~~~~~~~~l~~aGf~~~~ 173 (241)
T PRK08317 147 WSDHF------ADPWLGRRLPGLFREAGLTDIE 173 (241)
T ss_pred HHhcC------CCCcHHHHHHHHHHHcCCCcee
Confidence 22211 1122345667778999998664
No 66
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=69.63 E-value=88 Score=28.36 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=76.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
...|+-+|||.-.....+... .++..++=||..+.+-.+.+.. ..+..++..|+.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~~~v~gvD~s~~~i~~a~~~------------------------~~~~~~~~~d~~ 86 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPAARITGIDSSPAMLAEARSR------------------------LPDCQFVEADIA 86 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHh------------------------CCCCeEEECchh
Confidence 368999999988777666554 2456788888854433332211 123456666765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcEEEEEeecCCCCHHHHHHHHHHHH-----
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDDAFGQQMIRNLES----- 239 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~~e~i~p~d~fg~~m~~~l~~----- 239 (329)
+.. .....-++++-.++.+++. ...+++.+.+... +|.++ ..........+....+.+..
T Consensus 87 ~~~-----------~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~-~~~~~~~~~~~~~~~~~~~~~~~w~ 152 (258)
T PRK01683 87 SWQ-----------PPQALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLA-VQMPDNLDEPSHVLMREVAENGPWE 152 (258)
T ss_pred ccC-----------CCCCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEE-EECCCCCCCHHHHHHHHHHccCchH
Confidence 421 0122346666677788864 3467777777664 55543 33211112222221111111
Q ss_pred --cCCCcccccCCCCHHHHHHHHHhCCCce
Q 020223 240 --RGCALLGINATPTLLAKEKLFLDQGWQQ 267 (329)
Q Consensus 240 --~g~~l~~~~~~~t~~~~~~rf~~~Gw~~ 267 (329)
.+..-.....+++++...+.+...|+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 153 QNLPDRGARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred HHhccccccCcCCCCHHHHHHHHHhCCCce
Confidence 0101000124567788888898889764
No 67
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=65.94 E-value=1.4e+02 Score=29.21 Aligned_cols=217 Identities=19% Similarity=0.260 Sum_probs=122.0
Q ss_pred CCccccc---chhHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH-HHH
Q 020223 50 RSPIINR---GYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKK 125 (329)
Q Consensus 50 r~P~inr---G~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K 125 (329)
++|+|+. --|+....| ..|... ..||..||||-=--..+.... .--.|+-+|-.+|- +.=
T Consensus 93 ~S~Ii~lRnfNNwIKs~LI----~~y~~~----------~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 93 RSPIIFLRNFNNWIKSVLI----NLYTKR----------GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cCceeehhhhhHHHHHHHH----HHHhcc----------ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHH
Confidence 5788762 245554444 444332 367888999753333333222 23457888887652 222
Q ss_pred HHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCC--EEEEeeccccc--cChHHH
Q 020223 126 AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLP--TFIIAECVLIY--LDPDSS 201 (329)
Q Consensus 126 ~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~P--Tl~i~Egvl~Y--L~~~~~ 201 (329)
+++.+.......-+ .=...++.+|=.. ..|.++++ +..| -++.++-++.| -+.+.+
T Consensus 157 ~~RYrdm~~r~~~~--------------~f~a~f~~~Dc~~-~~l~d~~e-----~~dp~fDivScQF~~HYaFetee~a 216 (389)
T KOG1975|consen 157 RKRYRDMKNRFKKF--------------IFTAVFIAADCFK-ERLMDLLE-----FKDPRFDIVSCQFAFHYAFETEESA 216 (389)
T ss_pred HHHHHHHHhhhhcc--------------cceeEEEEeccch-hHHHHhcc-----CCCCCcceeeeeeeEeeeeccHHHH
Confidence 22222211100000 1234778887766 45666543 2333 67777888877 477888
Q ss_pred HHHHHHHHhcCC-CcEEEEEeecCCCCHHHHHHHHHHHH----------------------cCCCccccc---------C
Q 020223 202 RAIVGWASKTFS-TAVFFLYEQIHPDDAFGQQMIRNLES----------------------RGCALLGIN---------A 249 (329)
Q Consensus 202 ~~ll~~la~~f~-~~~~i~~e~i~p~d~fg~~m~~~l~~----------------------~g~~l~~~~---------~ 249 (329)
+.+|+..+...+ +|.||.- .|+. ..+++++++ ...|+.|+. .
T Consensus 217 r~~l~Nva~~LkpGG~FIgT---iPds---d~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVd 290 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGT---IPDS---DVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVD 290 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEe---cCcH---HHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccC
Confidence 899999999885 5565432 2431 122333221 123444432 1
Q ss_pred CC----CHHHHHHHHHhCCCceeeecCHHHHHHhCCCHH-HH---HHhhhc--------cCCChHHHHHHHhcCc
Q 020223 250 TP----TLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQ-ER---RRIERL--------ELFDEFEEWHMMQEHY 308 (329)
Q Consensus 250 ~~----t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~~~-er---~ri~~l--------E~fDE~Ee~~l~~~HY 308 (329)
+| ..+.....+.++|.+.+......++|+.++... +| +|..-| |.=||+|.-...+.-+
T Consensus 291 cPEylV~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~ 365 (389)
T KOG1975|consen 291 CPEYLVPFPTLVSLAEEYGLELVFVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFF 365 (389)
T ss_pred CcceeeehHHHHHHHHhcCcEEEEeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhh
Confidence 22 224566677889999999999999999888654 23 333333 5568888877765444
No 68
>PHA03412 putative methyltransferase; Provisional
Probab=65.56 E-value=6.8 Score=36.19 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=28.5
Q ss_pred ceEEEeCCCCchhhhhhcccC-CCCCEEEEecchh
Q 020223 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~p~ 120 (329)
.-+.+-|||.||-+||=.|.+ .+-+.+++|||-+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
T PHA03412 194 GLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNE 228 (241)
T ss_pred CeeecCCCCccceeehhhccCCCccceEEEEeecC
Confidence 458899999999999988876 5677899999854
No 69
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=62.38 E-value=81 Score=31.86 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=56.6
Q ss_pred ceEEEeCCCCchhhhhhcccC---CCCCEEEEecc--hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEe
Q 020223 87 KQILSLGAGFDTTYFQLQAEG---KAPHLYVELDF--IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~---~~~~~~~EvD~--p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~ 161 (329)
+.|+.+|||-=++..+....+ ...+++|=|.- ..++..|. ++..+. . .++.++|.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~-~v~~n~-----w--------------~~~V~vi~ 247 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQK-RVNANG-----W--------------GDKVTVIH 247 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHH-HHHHTT-----T--------------TTTEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHH-HHHhcC-----C--------------CCeEEEEe
Confidence 568899999999966543321 12456666655 33444443 333321 1 56899999
Q ss_pred ccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHh
Q 020223 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (329)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (329)
.|.++.+. +.+.=++|+|.+=.++..|-+-..|....+
T Consensus 248 ~d~r~v~l-----------pekvDIIVSElLGsfg~nEl~pE~Lda~~r 285 (448)
T PF05185_consen 248 GDMREVEL-----------PEKVDIIVSELLGSFGDNELSPECLDAADR 285 (448)
T ss_dssp S-TTTSCH-----------SS-EEEEEE---BTTBTTTSHHHHHHHGGG
T ss_pred CcccCCCC-----------CCceeEEEEeccCCccccccCHHHHHHHHh
Confidence 99999631 346789999999999998888888866554
No 70
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=61.65 E-value=1.2e+02 Score=27.01 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=58.1
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+-||||-=.....+.....+...++-||.-++ .. ..+.+++.+|+.+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~----------------------~~~v~~i~~D~~~ 102 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DP----------------------IVGVDFLQGDFRD 102 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cC----------------------CCCcEEEecCCCC
Confidence 46999999965544334332113457788887551 11 1246788999999
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHH---------HHHHHHHHHhcC-CCcEEEE
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS---------SRAIVGWASKTF-STAVFFL 219 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~---------~~~ll~~la~~f-~~~~~i~ 219 (329)
.+.+..++.. +.....-++++.....+..... ...+|+.+.+.. |+|.+++
T Consensus 103 ~~~~~~i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 103 ELVLKALLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred hHHHHHHHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 7656655443 2234456677766555543221 134566666655 5666654
No 71
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=61.26 E-value=65 Score=30.42 Aligned_cols=151 Identities=15% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCCCchhHHhhhcCCCcCCc---ccccchhHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchh-hhhhcccCC
Q 020223 33 GYMKDDYIHLFVRRPVRRSP---IINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTT-YFQLQAEGK 108 (329)
Q Consensus 33 gy~~Dp~a~~f~~~~~rr~P---~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr-~~RL~~~~~ 108 (329)
+.++-.||+.+.... .| +-...||-+..-+-+.=-..+....+. ....|+.+|+|==|. ...|.....
T Consensus 73 ~~LE~~~A~~l~~~~---~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~-----~p~rVaFIGSGPLPlT~i~la~~~~ 144 (276)
T PF03059_consen 73 GLLESHWAKRLLASD---NPLDHLESFPYYPNYEKLVRLEYAALRIHAGD-----PPSRVAFIGSGPLPLTSIVLAKQHG 144 (276)
T ss_dssp HHHHHHHHHHHHH-S---SHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT--------EEEEE---SS-HHHHHHH--HT
T ss_pred HHHHHHHHHHHHhCC---CHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCc-----ccceEEEEcCCCcchHHHHHHHHhC
Confidence 455667777776542 33 223345554433333222333333221 135899999994343 666653312
Q ss_pred CCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEE
Q 020223 109 APHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFI 187 (329)
Q Consensus 109 ~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~ 187 (329)
.+..+.-+|. |+-++.-++++.....| +.+..++.+|..+... + |. .+| ++|
T Consensus 145 ~~~~v~~iD~d~~A~~~a~~lv~~~~~L------------------~~~m~f~~~d~~~~~~--d-l~--~~D----vV~ 197 (276)
T PF03059_consen 145 PGARVHNIDIDPEANELARRLVASDLGL------------------SKRMSFITADVLDVTY--D-LK--EYD----VVF 197 (276)
T ss_dssp T--EEEEEESSHHHHHHHHHHHH---HH-------------------SSEEEEES-GGGG-G--G-------S----EEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhcccc------------------cCCeEEEecchhcccc--c-cc--cCC----EEE
Confidence 3555544444 33445555666632221 5678889888766321 1 11 122 455
Q ss_pred EeeccccccChHHHHHHHHHHHhcCCCcEEEEE
Q 020223 188 IAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (329)
Q Consensus 188 i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~ 220 (329)
++ .|+.|+.+.=.++|..+++..++|..+++
T Consensus 198 lA--alVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 198 LA--ALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp E---TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred Eh--hhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 54 56788899999999999999888887776
No 72
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=60.92 E-value=1.2e+02 Score=26.65 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+-+|||.-.....+... .+...++=+|....+....+.-. ..+..++.+|+.+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~-----------------------~~~~~~~~~d~~~ 91 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKR-FPQAEFIALDISAGMLAQAKTKL-----------------------SENVQFICGDAEK 91 (240)
T ss_pred CeEEEECCCccHHHHHHHHh-CCCCcEEEEeChHHHHHHHHHhc-----------------------CCCCeEEecchhh
Confidence 57999999988765555444 24555666665433322221100 1245667777755
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEE
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLY 220 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~ 220 (329)
.. +.....-++++-.++.|++. ..++++.+.+.. |+|.+++-
T Consensus 92 ~~----------~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 92 LP----------LEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CC----------CCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEE
Confidence 31 22334567888888888743 456777777765 45555443
No 73
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=58.11 E-value=1.9e+02 Score=28.37 Aligned_cols=150 Identities=10% Similarity=0.062 Sum_probs=81.2
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchh-HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....+... .+++++=+|.-+ .++.=++.+.. -+.+++..|.+
T Consensus 169 ~rVLDIGcG~G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~-----------------------l~v~~~~~D~~ 223 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH--YGVSVVGVTISAEQQKLAQERCAG-----------------------LPVEIRLQDYR 223 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhcc-----------------------CeEEEEECchh
Confidence 57999999988877777654 356777777743 33221222111 12344445543
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCCHH-HHHHHHHHHHcCCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAF-GQQMIRNLESRGCA 243 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d~f-g~~m~~~l~~~g~~ 243 (329)
+. . ..--.+++-+++.++.......+++.+.+.. |+|.+++.+...+...- .... +.+. -
T Consensus 224 ~l-------~------~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~---i~~y--i 285 (383)
T PRK11705 224 DL-------N------GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPW---INKY--I 285 (383)
T ss_pred hc-------C------CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCC---ceee--e
Confidence 31 1 1223556666777887777788888888877 45555544332221100 0000 0000 0
Q ss_pred cccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCC
Q 020223 244 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (329)
Q Consensus 244 l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l 281 (329)
+++ ...|+++..... .+.||.+.+..++..-|...|
T Consensus 286 fp~-g~lps~~~i~~~-~~~~~~v~d~~~~~~hy~~TL 321 (383)
T PRK11705 286 FPN-GCLPSVRQIAQA-SEGLFVMEDWHNFGADYDRTL 321 (383)
T ss_pred cCC-CcCCCHHHHHHH-HHCCcEEEEEecChhhHHHHH
Confidence 111 134676665554 446899887777777766433
No 74
>PHA03411 putative methyltransferase; Provisional
Probab=55.02 E-value=7.6 Score=36.68 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=27.3
Q ss_pred eEEEeCCCCchhhhhhcccC-CCCCEEEEecchh
Q 020223 88 QILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (329)
Q Consensus 88 QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~p~ 120 (329)
=+.--|||.||.+||=.|.+ .+-+.+++|||-+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (279)
T PHA03411 207 LVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYE 240 (279)
T ss_pred cEecCCCCcccceehhhccCCCccceEEEEEecc
Confidence 46778999999999988876 5677899999954
No 75
>PRK06922 hypothetical protein; Provisional
Probab=54.77 E-value=1.6e+02 Score=31.35 Aligned_cols=110 Identities=12% Similarity=0.191 Sum_probs=65.1
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHH-HhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~-i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=.....+... .++..++=+|..+.+-.+.+. +.. ...+++++.+|..
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~---------------------~g~~ie~I~gDa~ 477 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQN---------------------EGRSWNVIKGDAI 477 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhh---------------------cCCCeEEEEcchH
Confidence 57999999986655566543 367889999998765444432 111 0235677777765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecc----ccccC-------hHHHHHHHHHHHhcC-CCcEEEEEeecCCC
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECV----LIYLD-------PDSSRAIVGWASKTF-STAVFFLYEQIHPD 226 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egv----l~YL~-------~~~~~~ll~~la~~f-~~~~~i~~e~i~p~ 226 (329)
+.. . .+.+..--++++=.+ +.|++ .+...++++.+.+.. |+|.+++.|.+.+.
T Consensus 478 dLp---~-----~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E 542 (677)
T PRK06922 478 NLS---S-----SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTE 542 (677)
T ss_pred hCc---c-----ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCC
Confidence 531 1 122233334443222 23444 456677787777655 67888888876553
No 76
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=53.66 E-value=1.4e+02 Score=25.29 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=36.1
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+-+|||.=.....+... ...+.-+|+|- ..++.-++.+.. ..+.+++..|+.+
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~-~~~~~~~~~~~~----------------------~~~v~ii~~D~~~ 70 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER-AARVTAIEIDP-RLAPRLREKFAA----------------------ADNLTVIHGDALK 70 (169)
T ss_pred CEEEEECCCccHHHHHHHhc-CCeEEEEECCH-HHHHHHHHHhcc----------------------CCCEEEEECchhc
Confidence 57999999976666666554 24667778873 333332333221 3467888888876
Q ss_pred c
Q 020223 167 I 167 (329)
Q Consensus 167 ~ 167 (329)
.
T Consensus 71 ~ 71 (169)
T smart00650 71 F 71 (169)
T ss_pred C
Confidence 4
No 77
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=51.46 E-value=1.4e+02 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=27.1
Q ss_pred cceEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHh
Q 020223 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIE 130 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~ 130 (329)
.+-|+.+|||-=.....+.... ...+..+|+|- ++++.=++.+.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~-~vi~~a~~~~~ 117 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE-KVIELSKKFLP 117 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH-HHHHHHHHHhH
Confidence 3579999999765544443221 24688899984 55555444443
No 78
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=51.41 E-value=2e+02 Score=26.41 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=61.4
Q ss_pred cceEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccchhhhccc-ccccccCC--cc--cCC-CeE
Q 020223 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVT-ASISQAKG--EV--LGD-NYK 158 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~-~~~~~~~~--~l--~~~-~y~ 158 (329)
.+.|+.||.|-=..+..+.... ...+..+|+|- +|++.=++.+.....- +..+ ......++ -+ ..+ .|-
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-~Vv~~a~~~f~~~~~~---~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-EVVELARKYFPEFSEG---LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-HHHHHHHHHTHHHHTT---GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-HHHHHHHHhchhhccc---cCCCceEEEEhhhHHHHHhccCCccc
Confidence 4678888776444444443321 25788999996 4666655555431110 0000 00111111 00 133 799
Q ss_pred EEeccCCCch---------hHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCC
Q 020223 159 LLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (329)
Q Consensus 159 ~v~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~ 214 (329)
+|-+|+.++. .+-+.+.. -+.+ . =+++..+-..++.++....+.+.+.+.|+.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~-~L~~-~-Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKR-RLKP-D-GVLVLQAGSPFLHPELFKSILKTLRSVFPQ 214 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHH-HEEE-E-EEEEEEEEETTTTHHHHHHHHHHHHTTSSE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHh-hcCC-C-cEEEEEccCcccchHHHHHHHHHHHHhCCc
Confidence 9999999831 11121221 1111 1 233444455677888899999999998883
No 79
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=47.18 E-value=1.9e+02 Score=24.91 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=52.2
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
.+|+-+|||.=....-+.....+..+++=+|.-+.. . ..+.+++..|+.+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----------------------~~~i~~~~~d~~~ 83 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----------------------IENVDFIRGDFTD 83 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----------------------CCCceEEEeeCCC
Confidence 689999999765533332221123456666664432 1 1245667778887
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccc-----cCh----HHHHHHHHHHHhcC-CCcEEEE
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIY-----LDP----DSSRAIVGWASKTF-STAVFFL 219 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~Y-----L~~----~~~~~ll~~la~~f-~~~~~i~ 219 (329)
.+.+...++. +..+..-++++.+...+ +.. +....+++.+.+.. |+|.+++
T Consensus 84 ~~~~~~l~~~--~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 84 EEVLNKIRER--VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred hhHHHHHHHH--hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 5434433222 22345566776554221 111 22356677776655 4565544
No 80
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=46.54 E-value=2.2e+02 Score=25.50 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=64.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+.+|||.-.-+-.|... +..++=||+-++.-.+...-.....-...++. ...-...+.+++-+|+.+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGE-------FTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred CeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceecccc-------ceeeecCceEEEEccCCC
Confidence 58999999987667777654 67889999966644432110000000000000 000014578888999987
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA 215 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~ 215 (329)
.+. . .. ..-.+++-=++++-++++.=.+.++.+.+...++
T Consensus 106 ~~~-~------~~--~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 106 LTA-A------DL--GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred CCc-c------cC--CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 531 0 00 1223444456778999999888999998877554
No 81
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=45.22 E-value=20 Score=23.52 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=26.2
Q ss_pred CCCEEEEecchhHHHHHHHHHhccccchhhhccc
Q 020223 109 APHLYVELDFIEVTSKKAALIETHGELKDKVGVT 142 (329)
Q Consensus 109 ~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~ 142 (329)
.+..|..-|-|...++| ++|++.|+++++.|.+
T Consensus 4 ~DF~W~~~~ePH~~RRk-~IL~k~PeIk~L~G~d 36 (39)
T PF08557_consen 4 NDFEWVYTDEPHASRRK-EILKKHPEIKKLMGPD 36 (39)
T ss_pred cccEEeCCCCccHHHHH-HHHHhChHHHHHhCCC
Confidence 35678888899876554 5889999999999875
No 82
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=2.8e+02 Score=26.21 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=67.7
Q ss_pred cceEEEeCCCCchhhhhhcccC---CCCCEEEEecchh-HHHHHHHHHhc-cccchhhhcccccccccCCcccCCCeEEE
Q 020223 86 KKQILSLGAGFDTTYFQLQAEG---KAPHLYVELDFIE-VTSKKAALIET-HGELKDKVGVTASISQAKGEVLGDNYKLL 160 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~---~~~~~~~EvD~p~-vi~~K~~~i~~-~~~l~~~~g~~~~~~~~~~~l~~~~y~~v 160 (329)
.+..|-||+|..|..-+|...- ....+|+-||..+ +++.-.+.|.. .|.| ...-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--------------------~v~~l 138 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--------------------EVNAL 138 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--------------------eEeeh
Confidence 5889999999999877765431 2347899888854 44444443332 2211 12223
Q ss_pred eccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCc-EEEE-EeecCC
Q 020223 161 PVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA-VFFL-YEQIHP 225 (329)
Q Consensus 161 ~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~-~~i~-~e~i~p 225 (329)
+.|+ +..|.... ..+...++..=-.|--++|++....+..++....+| .+++ -|-++|
T Consensus 139 ~~~~------~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 139 CGDY------ELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred hhhH------HHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 3344 33344322 122334444444567899999999999999987655 4433 577776
No 83
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=44.37 E-value=2.3e+02 Score=26.21 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=57.1
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
..+||-||||-=-.---|... .+...+.-||- |++++.-++.+. +.++.-+|+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp-------------------------~~~f~~aDl 84 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLP-------------------------DATFEEADL 84 (257)
T ss_pred cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCC-------------------------CCceecccH
Confidence 579999999853222122222 35778899998 566655544432 345566777
Q ss_pred CCchhHHHHHHhCCCCCCCC-EEEEeeccccccChHHHHHHHHHHHhcCCCcEEE
Q 020223 165 RDIQMLNEVINLANMDPSLP-TFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFF 218 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~P-Tl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i 218 (329)
++ +.+..| -++.+-.||.+|+.. ..-+-+++...-|+|...
T Consensus 85 ~~------------w~p~~~~dllfaNAvlqWlpdH-~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 85 RT------------WKPEQPTDLLFANAVLQWLPDH-PELLPRLVSQLAPGGVLA 126 (257)
T ss_pred hh------------cCCCCccchhhhhhhhhhcccc-HHHHHHHHHhhCCCceEE
Confidence 66 345555 466778888888754 444555556555666543
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=43.46 E-value=2.5e+02 Score=25.25 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=68.4
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchh---hhcccccccccCCcccCCCeEEEecc
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKD---KVGVTASISQAKGEVLGDNYKLLPVD 163 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~---~~g~~~~~~~~~~~l~~~~y~~v~~D 163 (329)
..|+.+|||.-.-+-.|... +..++=||+-++--.|.. .+.. +.. ..|.. ......+.++.-+|
T Consensus 39 ~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~--~~~~-l~~~~~~~~~~-------~~~~~~~v~~~~~D 105 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFF--AENG-LTPQTRQSGEF-------EHYQAGEITIYCGD 105 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHH--HHcC-CCccccccccc-------cccccCceEEEECc
Confidence 57999999987777777764 678889998766444421 1110 000 00100 00124567888888
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCC-CcE
Q 020223 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAV 216 (329)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~ 216 (329)
+.+... . +...-.+++-.++++-++++.=.+.++.+.+... +|.
T Consensus 106 ~~~l~~--------~-~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 106 FFALTA--------A-DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred ccCCCc--------c-cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 887421 0 1123477788888999999999999999999774 543
No 85
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=42.24 E-value=68 Score=26.43 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCCcE-EEEEeecCCCCHHHHHHHHHHHHcCCCccc
Q 020223 200 SSRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALLG 246 (329)
Q Consensus 200 ~~~~ll~~la~~f~~~~-~i~~e~i~p~d~fg~~m~~~l~~~g~~l~~ 246 (329)
-+..+++.|++..|++. -+.+-+ ...|+||..+.+.|+.+|-.+..
T Consensus 8 iA~D~v~qL~~~ypPA~Tt~~L~q-~~~d~Fg~aL~~~LR~~GYaV~e 54 (121)
T PF07283_consen 8 IAGDMVSQLAEQYPPAKTTFELKQ-KDPDPFGQALENALRAKGYAVIE 54 (121)
T ss_pred HHHHHHHHHHHhcCCCccEEEEEc-CCCChHHHHHHHHHHhcCcEEEe
Confidence 35677888888887653 222322 34589999999999999876643
No 86
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=40.27 E-value=2.8e+02 Score=24.94 Aligned_cols=138 Identities=8% Similarity=0.014 Sum_probs=69.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
...|+-+|||.=.....+... +..++-+|. |++++.=++... ...++.+|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-------------------------~~~~~~~d~ 94 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-------------------------ADHYLAGDI 94 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-------------------------CCCEEEcCc
Confidence 357999999976554445433 467888888 444432221111 113456666
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
.+.. +....--++++-.++.+++. ...+|+.+.+...++..+++-.+.+. .+. .+.+.+...+.+
T Consensus 95 ~~~~----------~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~-~~~-el~~~~~~~~~~- 159 (251)
T PRK10258 95 ESLP----------LATATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQG-SLP-ELHQAWQAVDER- 159 (251)
T ss_pred ccCc----------CCCCcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCC-chH-HHHHHHHHhccC-
Confidence 5531 11122345555555655542 45677777776644333344333322 121 122222222222
Q ss_pred ccccCCCCHHHHHHHHHhCCCc
Q 020223 245 LGINATPTLLAKEKLFLDQGWQ 266 (329)
Q Consensus 245 ~~~~~~~t~~~~~~rf~~~Gw~ 266 (329)
.....|.+.++..+.+...|+.
T Consensus 160 ~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 160 PHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred CccccCCCHHHHHHHHHhCCce
Confidence 2234567777777777766664
No 87
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=40.00 E-value=3.3e+02 Score=25.72 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=67.1
Q ss_pred cceEEEeCCCCchhhhhhccc-CCCCCEEEEecchhHHHHHHHHHhccccchhhhccccc--ccccCC-c-c--cCCCeE
Q 020223 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTAS--ISQAKG-E-V--LGDNYK 158 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~--~~~~~~-~-l--~~~~y~ 158 (329)
.+-|+.+|.|-=.....+... ....+..+|||- +|++.=++.+...... .. ++. ..+.++ . + .+..|-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-~Vi~~ar~~l~~~~~~---~~-dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-AVIELARKYLPEPSGG---AD-DPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-HHHHHHHHhccCcccc---cC-CCceEEEeccHHHHHHhCCCcCC
Confidence 457888888855554444322 146788999995 7888888887653210 00 111 112222 0 1 133688
Q ss_pred EEeccCCCc---------hhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCC
Q 020223 159 LLPVDLRDI---------QMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (329)
Q Consensus 159 ~v~~DL~~~---------~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~ 214 (329)
+|-+|..|. ..+-+.+.+ .+ +.+=++++.+-..++..+......+.+...|+.
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~-~L--~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRR-AL--KEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHH-hc--CCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 888888886 111111221 11 233355555555777777777777777666654
No 88
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=37.33 E-value=2.7e+02 Score=23.99 Aligned_cols=141 Identities=12% Similarity=0.040 Sum_probs=72.3
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+-+|||.=...-.+... .....+-||.-+-.-.+.+ ..+..++..|+.+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~i~~a~--------------------------~~~~~~~~~d~~~ 66 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE--KQVRGYGIEIDQDGVLACV--------------------------ARGVNVIQGDLDE 66 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc--cCCcEEEEeCCHHHHHHHH--------------------------HcCCeEEEEEhhh
Confidence 57999999987766555433 2344566665432221111 1123456666654
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCC---
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA--- 243 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~--- 243 (329)
. +. .+..+.--++++-.++.+++. ..++++.+.+.... .++.+ |+-.+...-..-+.....+
T Consensus 67 ~--l~------~~~~~sfD~Vi~~~~l~~~~d--~~~~l~e~~r~~~~-~ii~~----p~~~~~~~~~~~~~~~~~~~~~ 131 (194)
T TIGR02081 67 G--LE------AFPDKSFDYVILSQTLQATRN--PEEILDEMLRVGRH-AIVSF----PNFGYWRVRWSILTKGRMPVTG 131 (194)
T ss_pred c--cc------ccCCCCcCEEEEhhHhHcCcC--HHHHHHHHHHhCCe-EEEEc----CChhHHHHHHHHHhCCccccCC
Confidence 1 10 122233457777788888854 44566666653222 12222 3211111101111111111
Q ss_pred -----ccc--ccCCCCHHHHHHHHHhCCCceeee
Q 020223 244 -----LLG--INATPTLLAKEKLFLDQGWQQAVA 270 (329)
Q Consensus 244 -----l~~--~~~~~t~~~~~~rf~~~Gw~~~~~ 270 (329)
+.. ...+.+.++..+.+.++||+.+..
T Consensus 132 ~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 132 ELPYDWYNTPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred CCCccccCCCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 111 124778999999999999998764
No 89
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=36.58 E-value=2.9e+02 Score=24.16 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=23.4
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchh
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE 120 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~ 120 (329)
...|+-+|||.=+....+... .++..++=||.-+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~~~v~gVD~s~ 74 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPDINFIGIEVHE 74 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCCccEEEEEech
Confidence 367999999998887766543 2455666666643
No 90
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=35.55 E-value=3e+02 Score=23.90 Aligned_cols=125 Identities=9% Similarity=0.135 Sum_probs=63.7
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHH-HHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 020223 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK-AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (329)
Q Consensus 86 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K-~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL 164 (329)
...|+-+|||.=.....+... .++..++-||.-..+-.+ ++.+.+. + -.|.+++.+|+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~-~p~~~v~gvD~~~~~l~~a~~~~~~~-------~-------------l~ni~~i~~d~ 75 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ-NPDKNFLGIEIHTPIVLAANNKANKL-------G-------------LKNLHVLCGDA 75 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHh-------C-------------CCCEEEEccCH
Confidence 357999999988887777655 355667777763333222 2223221 1 24788888888
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeeccccccChHH------HHHHHHHHHhcCC-CcEEEEEeecCCCCHHHHHHHHHH
Q 020223 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS------SRAIVGWASKTFS-TAVFFLYEQIHPDDAFGQQMIRNL 237 (329)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~------~~~ll~~la~~f~-~~~~i~~e~i~p~d~fg~~m~~~l 237 (329)
.+. +... ++...-..++.-....+..... ...+++.+++... +|.+ .+.. ........|...+
T Consensus 76 ~~~--~~~~-----~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l-~~~t--d~~~~~~~~~~~~ 145 (194)
T TIGR00091 76 NEL--LDKF-----FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVI-HFKT--DNEPLFEDMLKVL 145 (194)
T ss_pred HHH--HHhh-----CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEE-EEEe--CCHHHHHHHHHHH
Confidence 653 1111 1111122222222222222111 1457787777664 4544 3321 2223456667777
Q ss_pred HHcC
Q 020223 238 ESRG 241 (329)
Q Consensus 238 ~~~g 241 (329)
.+.+
T Consensus 146 ~~~~ 149 (194)
T TIGR00091 146 SEND 149 (194)
T ss_pred HhCC
Confidence 6654
No 91
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=35.27 E-value=3.4e+02 Score=24.52 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=56.2
Q ss_pred cceEEEeC--CCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 020223 86 KKQILSLG--AGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (329)
Q Consensus 86 ~~QVV~LG--aGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~D 163 (329)
.+.|+.+| +|+.+..+-...++...+.-+|+|-. .++.=++.+.+. |- .++.+++-.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~-~~~~A~~n~~~~-------gl------------~~~i~~~~gd 128 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKE-AYEVGLEFIKKA-------GV------------DHKINFIQSD 128 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHH-HHHHHHHHHHHc-------CC------------CCcEEEEEcc
Confidence 46799999 56665533222221235666777754 334333344432 11 4567888888
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecC
Q 020223 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH 224 (329)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~ 224 (329)
..+ .+.. |...+- ....-++...+ ..+.-..++..+.....+|..+++|.+.
T Consensus 129 a~~--~L~~-l~~~~~-~~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 129 ALS--ALDQ-LLNNDP-KPEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHH--HHHH-HHhCCC-CCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 765 2333 321111 11222332222 1244456677777777666677887654
No 92
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.67 E-value=49 Score=31.76 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhccc---CCCCC-EEEEecch
Q 020223 68 LLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAE---GKAPH-LYVELDFI 119 (329)
Q Consensus 68 ~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~---~~~~~-~~~EvD~p 119 (329)
...+|.++++.- .-+|++|+|||+|.--.-+-.. +.+.+ .+.++|--
T Consensus 263 ~AA~fvak~~nl-----egV~l~SFgCG~Davttd~i~eIl~~~nk~ytvlkIDE~ 313 (351)
T COG3580 263 AAAKFVAKHPNL-----EGVQLVSFGCGLDAVTTDLIEEILEGHNKIYTVLKIDEG 313 (351)
T ss_pred HHHHHHhcCCCe-----eeEEEeecccCcchhHHHHHHHHHHhCCCeeEEEEecCC
Confidence 456777777641 1479999999999875443211 01224 77888864
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=33.05 E-value=3.5e+02 Score=23.97 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=21.4
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF 118 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~ 118 (329)
..|+-+|||.=.....+... .++..++=+|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~~~v~~iD~ 119 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPDARVTAVDI 119 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCCCEEEEEEC
Confidence 46999999988777766654 24456666665
No 94
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=32.14 E-value=2.3e+02 Score=27.83 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=54.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
+-||-.|||.--+.|--... ..-++|-|.-.++.+.-+++++.+ . ..++...|+.-..+
T Consensus 179 kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~MAqyA~~Lv~~N-~------------------~~~rItVI~GKiEd 237 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQA--GAKKVYAVEASEMAQYARKLVASN-N------------------LADRITVIPGKIED 237 (517)
T ss_pred cEEEEecCCccHHHHHHHHh--CcceEEEEehhHHHHHHHHHHhcC-C------------------ccceEEEccCcccc
Confidence 67999999998884443333 356789999999999999888864 1 16788888887776
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYL 196 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL 196 (329)
.+ | |.+--++|+|-.-+-|
T Consensus 238 ie-L----------PEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 238 IE-L----------PEKVDVIISEPMGYML 256 (517)
T ss_pred cc-C----------chhccEEEeccchhhh
Confidence 53 1 3455677887654433
No 95
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=31.74 E-value=2.6e+02 Score=27.14 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCC
Q 020223 183 LPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (329)
Q Consensus 183 ~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~ 243 (329)
..|+++-=|--..|+++...+|++.+.+.+++...+..| .+|++ +....++.+++.|+.
T Consensus 57 ~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE-~nP~~-lt~e~l~~lk~~G~n 115 (353)
T PRK05904 57 FKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIE-CNPEL-ITQSQINLLKKNKVN 115 (353)
T ss_pred eEEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEE-eccCc-CCHHHHHHHHHcCCC
Confidence 457888777777889999999999998888665555665 35532 223344555555554
No 96
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.47 E-value=28 Score=26.37 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcccccCCCCHHHHHHHHHhCCCceeeecCHHHHH
Q 020223 198 PDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVY 277 (329)
Q Consensus 198 ~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~ 277 (329)
|+...++.+++....|+-.+--|.+..-++..|++++ |+.+++ +..+...+++.+.||..... +-++.+
T Consensus 9 PErpGal~~Fl~~l~p~~~ITeF~YR~~~~~~a~vlv------Gi~~~~----~~~~~l~~~l~~~g~~~~dl-s~ne~~ 77 (81)
T cd04907 9 PERPGALKKFLNELLPKWNITLFHYRNQGSDYGRVLV------GIQVPD----ADLDELKERLDALGYPYQEE-TDNPAY 77 (81)
T ss_pred CCCCCHHHHHHHHhCCCCeEeEEEEecCCCCceeEEE------EEEeCh----HHHHHHHHHHHHcCCCeEEC-CCCHHH
Confidence 4555667777777655545555666654433333221 333332 14577889999999997643 335554
Q ss_pred Hh
Q 020223 278 ST 279 (329)
Q Consensus 278 ~~ 279 (329)
..
T Consensus 78 ~~ 79 (81)
T cd04907 78 KL 79 (81)
T ss_pred HH
Confidence 43
No 97
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=30.72 E-value=1.4e+02 Score=25.59 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCcE-EEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223 201 SRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (329)
Q Consensus 201 ~~~ll~~la~~f~~~~-~i~~e~i~p~d~fg~~m~~~l~~~g~~l~ 245 (329)
+..+.+.|++..|++. .+.+.+-. .|+||..+.+.|+++|-.+.
T Consensus 37 A~D~v~qL~~~ypPA~Tt~~l~q~~-~D~Fg~aL~~aLR~~GYaV~ 81 (151)
T PRK13883 37 ATDAVQQLATLYPPAQTRFELQQPT-PDAFGQALVKALRDKGYALL 81 (151)
T ss_pred HHHHHHHHHHhCCCcceEEEEecCC-CcHHHHHHHHHHHHcCeEEE
Confidence 5666777888777653 34444433 38999999999999987764
No 98
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=29.48 E-value=2.5e+02 Score=23.76 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCC--CEEEEecchhHHHHHHHHH
Q 020223 68 LLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAP--HLYVELDFIEVTSKKAALI 129 (329)
Q Consensus 68 ~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~--~~~~EvD~p~vi~~K~~~i 129 (329)
++.+++.... ...|+-||||.=.....+.... +. +..+|++-..+...|+.+-
T Consensus 22 lL~~~l~~~~--------~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~ 76 (170)
T PF05175_consen 22 LLLDNLPKHK--------GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAE 76 (170)
T ss_dssp HHHHHHHHHT--------TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHH
T ss_pred HHHHHHhhcc--------CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHH
Confidence 4555555543 3689999999988877776652 44 7788888766655555543
No 99
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.01 E-value=2.8e+02 Score=25.51 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=52.8
Q ss_pred CeEEEeccCCC-chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHH
Q 020223 156 NYKLLPVDLRD-IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMI 234 (329)
Q Consensus 156 ~y~~v~~DL~~-~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~ 234 (329)
.|++|..||.+ .+|+ |+..-.....|+|+...+. --++.-+++.+-+.+|++ -.+.|.|++-|.+.
T Consensus 34 ~yE~veedl~~Ks~~l---l~~np~hkKVPvL~Hn~k~-----i~ESliiveYiDe~w~~~-----~~iLP~DPy~Ra~a 100 (231)
T KOG0406|consen 34 PYEYVEEDLTNKSEWL---LEKNPVHKKVPVLEHNGKP-----ICESLIIVEYIDETWPSG-----PPILPSDPYERAQA 100 (231)
T ss_pred ceEEEecCCCCCCHHH---HHhccccccCCEEEECCce-----ehhhHHHHHHHHhhccCC-----CCCCCCCHHHHHHH
Confidence 59999999984 4554 4454577789999999998 347888899999999853 24578898887766
Q ss_pred HHHH
Q 020223 235 RNLE 238 (329)
Q Consensus 235 ~~l~ 238 (329)
+-+.
T Consensus 101 rfwa 104 (231)
T KOG0406|consen 101 RFWA 104 (231)
T ss_pred HHHH
Confidence 5543
No 100
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=28.72 E-value=2e+02 Score=28.35 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=56.7
Q ss_pred CCCEEEEeeccccccChHHHHHHHHHHHhcCCC--cEEEEEeecCCCCHHHHHHHHHHHHcCCCcccc------------
Q 020223 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFST--AVFFLYEQIHPDDAFGQQMIRNLESRGCALLGI------------ 247 (329)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~--~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~~~------------ 247 (329)
..-|+++-=|--..|+++...++++.+.+.|+- ...+..| .+|++ +...+++.+++.|+.-.++
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E-~~P~~-lt~e~l~~l~~~GvnrislGvQS~~d~~L~~ 143 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLE-IDPGT-FDLEQLQGYRSLGVNRVSLGVQAFQDELLAL 143 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCc-CCHHHHHHHHHCCCCEEEEEcccCCHHHHHH
Confidence 456888888888889999999999999887752 2345666 56643 3455666777777663322
Q ss_pred -cCCCCHHH---HHHHHHhCCCceee
Q 020223 248 -NATPTLLA---KEKLFLDQGWQQAV 269 (329)
Q Consensus 248 -~~~~t~~~---~~~rf~~~Gw~~~~ 269 (329)
....+.++ ..+.++++||+++.
T Consensus 144 l~R~~~~~~~~~ai~~l~~~G~~~v~ 169 (400)
T PRK07379 144 CGRSHRVKDIFAAVDLIHQAGIENFS 169 (400)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 22234444 45556778998543
No 101
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=28.16 E-value=76 Score=27.85 Aligned_cols=34 Identities=18% Similarity=0.490 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhc
Q 020223 170 LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKT 211 (329)
Q Consensus 170 l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~ 211 (329)
+.+.|+..|+|.+.+|= |++|+++..++.|.+..
T Consensus 50 ~~dlL~~~Gid~~~lt~--------~~SP~~V~~~llw~~~a 83 (177)
T PF14965_consen 50 WTDLLDVLGIDGSNLTH--------YFSPGGVQTVLLWGAVA 83 (177)
T ss_pred HHHHHHHhCcccccccc--------ccCHHHHHHHHHHHHHH
Confidence 56778889999988875 99999999999987653
No 102
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=27.91 E-value=4.8e+02 Score=23.98 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=85.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~ 165 (329)
..|+-+|||.=-.+.++... .....++=+|+- .+++.=++...+. | ..++.+|-+|..
T Consensus 53 ~~vLDva~GTGd~a~~~~k~-~g~g~v~~~D~s~~ML~~a~~k~~~~-------~-------------~~~i~fv~~dAe 111 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKK-------G-------------VQNVEFVVGDAE 111 (238)
T ss_pred CEEEEecCCccHHHHHHHHh-cCCceEEEEECCHHHHHHHHHHhhcc-------C-------------ccceEEEEechh
Confidence 57999999988788888766 346789999995 4444444443321 1 123677777766
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcC-CCcEEEEEeecCCCC-HHHHHHH----H-HHH
Q 020223 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDD-AFGQQMI----R-NLE 238 (329)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~~e~i~p~d-~fg~~m~----~-~l~ 238 (329)
++. |..+.=.++.+=-.|-.++ ...+.|+-+.+.. |+|.+++.|.-.|.. .+.+... + -+-
T Consensus 112 ~LP----------f~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P 179 (238)
T COG2226 112 NLP----------FPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLP 179 (238)
T ss_pred hCC----------CCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhh
Confidence 642 2222222333333344444 4455555555544 677777888777653 2222111 1 111
Q ss_pred HcCCC-----------cccccCCCCHHHHHHHHHhCCCceee
Q 020223 239 SRGCA-----------LLGINATPTLLAKEKLFLDQGWQQAV 269 (329)
Q Consensus 239 ~~g~~-----------l~~~~~~~t~~~~~~rf~~~Gw~~~~ 269 (329)
..|.- ..++..+|+.+...+-+.+.||..+.
T Consensus 180 ~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 180 LIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred hhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 11111 12456778888888888888888764
No 103
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=26.78 E-value=80 Score=28.06 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEE
Q 020223 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (329)
Q Consensus 154 ~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~ 220 (329)
.++.++-..||.+... ....--++++=-||+|++++.-.++++.+.+...+|.+++.
T Consensus 117 r~~V~F~~~NL~~~~~----------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDP----------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp HTTEEEEE--TT-S----------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCceEEEecccCCCCc----------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4566777777766111 12233688899999999999999999999998866655554
No 104
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.08 E-value=1.6e+02 Score=26.45 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=73.4
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
+.|+-||||-=-+++=....+...+..+|+|-..+-..|+..-+- ..+..++.+|+++
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l----------------------~g~v~f~~~dv~~ 104 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL----------------------LGDVEFVVADVSD 104 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh----------------------CCceEEEEcchhh
Confidence 579999999887776655554567889999988887777755431 3577889999988
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCccc
Q 020223 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246 (329)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~~ 246 (329)
... .+| |.+ |.| |=|+. --.++-+| +.+.| +.+--..+
T Consensus 105 ~~~--------~~d----tvi--------mNP--------------PFG~~----~rhaDr~F---l~~Al-e~s~vVYs 142 (198)
T COG2263 105 FRG--------KFD----TVI--------MNP--------------PFGSQ----RRHADRPF---LLKAL-EISDVVYS 142 (198)
T ss_pred cCC--------ccc----eEE--------ECC--------------CCccc----cccCCHHH---HHHHH-HhhheEEE
Confidence 521 222 111 111 11111 00011111 22222 23445677
Q ss_pred ccCCCCHHHHHHHHHhCCCceeee
Q 020223 247 INATPTLLAKEKLFLDQGWQQAVA 270 (329)
Q Consensus 247 ~~~~~t~~~~~~rf~~~Gw~~~~~ 270 (329)
++..++.+-...++..+|+++...
T Consensus 143 iH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 143 IHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred eeccccHHHHHHHHHhcCCeEEEE
Confidence 888888888888899999987654
No 105
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.39 E-value=3.7e+02 Score=21.83 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCcE-EEEEeecCCCCHHHHHHHHHHHHcCCCcccccCCCCHHHHHHHHHhCCCceeeecC
Q 020223 200 SSRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWD 272 (329)
Q Consensus 200 ~~~~ll~~la~~f~~~~-~i~~e~i~p~d~fg~~m~~~l~~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d 272 (329)
...++-+.+.+.||+.. ...| .++.+.+.++++|. ..|++++..+++...|++.+.+..
T Consensus 18 ~~~~i~~~l~~~~p~~~V~~af--------ts~~i~~~l~~~~~------~~p~~~eaL~~l~~~G~~~V~V~P 77 (127)
T cd03412 18 TIDAIEDKVRAAFPDYEVRWAF--------TSRMIRKKLKKRGI------EVDTPEEALAKLAADGYTEVIVQS 77 (127)
T ss_pred HHHHHHHHHHHHCCCCeEEEEe--------cHHHHHHHHHhcCC------CCCCHHHHHHHHHHCCCCEEEEEe
Confidence 45556666667777542 2333 24667788888773 347889999999999999876543
No 106
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=24.46 E-value=74 Score=30.12 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.1
Q ss_pred CEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEE
Q 020223 184 PTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (329)
Q Consensus 184 PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~ 220 (329)
-=++++..|++|++++.-.++++.+.+...+|.+++.
T Consensus 224 fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 224 FDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred cceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3578888899999999999999999998755545443
No 107
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=24.18 E-value=1.8e+02 Score=24.74 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCcE-EEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223 201 SRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (329)
Q Consensus 201 ~~~ll~~la~~f~~~~-~i~~e~i~p~d~fg~~m~~~l~~~g~~l~ 245 (329)
+..+++.|++..|++. -+.+. ...|+||.-+.+.|+.+|-.+.
T Consensus 43 A~D~vsqLae~~pPa~tt~~l~--q~~d~Fg~aL~~aLr~~GYaVv 86 (145)
T PRK13835 43 AGDMVSRLAEQIGPGTTTIKLK--KDTSPFGQALEAALKGWGYAVV 86 (145)
T ss_pred HHHHHHHHHHhcCCCceEEEEe--ecCcHHHHHHHHHHHhcCeEEe
Confidence 5667778888887653 33343 3348999999999988886654
No 108
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=23.93 E-value=3.7e+02 Score=21.96 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=42.8
Q ss_pred CEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCc
Q 020223 184 PTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (329)
Q Consensus 184 PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l 244 (329)
..++|..++.--++++...+.+..+...++.. .+..|.......+|+...+.+.++|.++
T Consensus 14 g~~yvld~~~~r~~~~~~~~~i~~~~~~~~~~-~~~~E~~~~~~~~~~~l~~~l~~~~~~~ 73 (142)
T TIGR01630 14 KRAYVLDAIYDKEPPPETERLVIRLLNAHRVN-LAIIESNQEGKSFGRSLVKILKEKGIRT 73 (142)
T ss_pred CCEEEEEEEeccCChHHHHHHHHHHHHHcCCc-ceeeeccccchHHHHHHHHHHHhhCCCC
Confidence 46777777777888888777777777766533 3457777766778888888887777543
No 109
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=23.50 E-value=85 Score=29.21 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHHHHHHHHh
Q 020223 61 RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIE 130 (329)
Q Consensus 61 R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~i~ 130 (329)
|.-.+|.+...-...-+. ..-|+-||||+=|.++=.... .++..|+=.|.. ..++.=.+.+.
T Consensus 88 Rl~~Ld~fY~~if~~~~~-------p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~ 150 (251)
T PF07091_consen 88 RLPNLDEFYDEIFGRIPP-------PDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLA 150 (251)
T ss_dssp CGGGHHHHHHHHCCCS----------SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCC-------CchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHH
Confidence 444455555444433221 568999999999995543333 256788777664 44454444443
No 110
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=23.37 E-value=7.2e+02 Score=24.48 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=39.0
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 87 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
..|+-||||.=+....+... ...+.-+|++-..+-..|+..-.. | -.|.+++..|..+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~--------~-------------~~nv~~~~~d~~~ 351 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELN--------G-------------IANVEFLAGTLET 351 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHh--------C-------------CCceEEEeCCHHH
Confidence 57999999999998888765 245666777766555555543221 1 2467888888754
No 111
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=22.99 E-value=8.9e+02 Score=25.86 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=53.2
Q ss_pred cccchhHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccc
Q 020223 54 INRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHG 133 (329)
Q Consensus 54 inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~ 133 (329)
.+.|+++-.+-.+..+.+... .+.|++||||.=.....+...+...+.-+|++-..+-..|+.+-.+
T Consensus 518 ~~tG~flDqr~~R~~~~~~~~-----------g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n-- 584 (702)
T PRK11783 518 LDTGLFLDHRPTRRMIGQMAK-----------GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN-- 584 (702)
T ss_pred CcceECHHHHHHHHHHHHhcC-----------CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--
Confidence 446778766666666655431 2579999999888877766543334667777777666666655332
Q ss_pred cchhhhcccccccccCCcccCCCeEEEeccCCC
Q 020223 134 ELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (329)
Q Consensus 134 ~l~~~~g~~~~~~~~~~~l~~~~y~~v~~DL~~ 166 (329)
| +...+.+++..|..+
T Consensus 585 ------g-----------~~~~~v~~i~~D~~~ 600 (702)
T PRK11783 585 ------G-----------LSGRQHRLIQADCLA 600 (702)
T ss_pred ------C-----------CCccceEEEEccHHH
Confidence 1 112478888888765
No 112
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=22.79 E-value=4.3e+02 Score=26.45 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=39.0
Q ss_pred CCCEEEEeeccccccChHHHHHHHHHHHhcCCC--cEEEEEeecCCCCHHHHHHHHHHHHcCCC
Q 020223 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFST--AVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (329)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~--~~~i~~e~i~p~d~fg~~m~~~l~~~g~~ 243 (329)
...++++-=|.-..|+++...+|++.+.+.|+- ...+..| .+|. .+...+++.+++.|+.
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie-~~p~-~lt~e~l~~L~~~G~~ 164 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVE-IDPR-TVTAEMLQALAALGFN 164 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEE-eccc-cCCHHHHHHHHHcCCC
Confidence 455777777888888888888988888887652 2233444 3553 2345556666666654
No 113
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=22.74 E-value=43 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=18.0
Q ss_pred CCEEEEeeccccccChHHHHHHHHHHHhcCCCc
Q 020223 183 LPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA 215 (329)
Q Consensus 183 ~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~ 215 (329)
.--++++=.|+.|+ +....+++.+.+...++
T Consensus 66 ~fD~V~~~~vl~~l--~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 66 SFDLVVASNVLHHL--EDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp --SEEEEE-TTS----S-HHHHHHHHTTT-TSS
T ss_pred ccceehhhhhHhhh--hhHHHHHHHHHHHcCCC
Confidence 44567777999999 66668899888866443
No 114
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.72 E-value=3e+02 Score=25.66 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred cccc-----ChHHHHHHHHHHHhcCC----CcEEEEEeecCCCCHHH--HHHHHHHHHcC---CCcccccCCCCHHHHHH
Q 020223 193 LIYL-----DPDSSRAIVGWASKTFS----TAVFFLYEQIHPDDAFG--QQMIRNLESRG---CALLGINATPTLLAKEK 258 (329)
Q Consensus 193 l~YL-----~~~~~~~ll~~la~~f~----~~~~i~~e~i~p~d~fg--~~m~~~l~~~g---~~l~~~~~~~t~~~~~~ 258 (329)
|.|- .++...++++.+.+.++ +...+..=.=++..+.+ ..+...|.+.+ +=+-+++.||++++...
T Consensus 111 LL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~ 190 (262)
T PF06180_consen 111 LLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIA 190 (262)
T ss_dssp SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHH
Q ss_pred HHHhCCCceee
Q 020223 259 LFLDQGWQQAV 269 (329)
Q Consensus 259 rf~~~Gw~~~~ 269 (329)
++++.|.+.+.
T Consensus 191 ~L~~~g~k~V~ 201 (262)
T PF06180_consen 191 RLKKKGIKKVH 201 (262)
T ss_dssp HHHHHT-SEEE
T ss_pred HHHhcCCCeEE
No 115
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.38 E-value=4.1e+02 Score=27.91 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=63.6
Q ss_pred CCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCH----HHHHHHHHHHHcCCCcccccCCCCHHHHH
Q 020223 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDA----FGQQMIRNLESRGCALLGINATPTLLAKE 257 (329)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~----fg~~m~~~l~~~g~~l~~~~~~~t~~~~~ 257 (329)
+-+.||+-| -+..|+.-.+..+++.+.+....|..|+..--+|... |-+.+. -..|..+. ..++.+..
T Consensus 188 ~P~iLflDE-PTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~l---Ls~G~~vy----~G~~~~~~ 259 (613)
T KOG0061|consen 188 DPSILFLDE-PTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLL---LSEGEVVY----SGSPRELL 259 (613)
T ss_pred CCCEEEecC-CCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhh---hcCCcEEE----ecCHHHHH
Confidence 344555555 5678999999999999988877787777766666421 222221 23454432 23567888
Q ss_pred HHHHhCCCceeeecCHHHHHHhCCC
Q 020223 258 KLFLDQGWQQAVAWDMLRVYSTFIN 282 (329)
Q Consensus 258 ~rf~~~Gw~~~~~~d~~~~~~~~l~ 282 (329)
+.|.++|+..-...++.+.+-+.++
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s 284 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLS 284 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHc
Confidence 8999999998888888888877555
No 116
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.11 E-value=6.2e+02 Score=23.27 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=59.1
Q ss_pred cceEEEeC--CCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 020223 86 KKQILSLG--AGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (329)
Q Consensus 86 ~~QVV~LG--aGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~~~~y~~v~~D 163 (329)
.+.|+-+| +|+-|..+-...+....+.-+|.| |+..+.-++.+.+. |- .++.+++..|
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~-~~~~~~Ar~~~~~a-------g~------------~~~I~~~~G~ 139 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDIN-RENYELGLPVIQKA-------GV------------AHKIDFREGP 139 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHHHHHC-------CC------------CCceEEEecc
Confidence 46799998 677777554332211345666666 56666666666653 21 4677777776
Q ss_pred CCCchhHHHHHHhCC-CCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecC
Q 020223 164 LRDIQMLNEVINLAN-MDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH 224 (329)
Q Consensus 164 L~~~~~l~~~L~~~g-~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~ 224 (329)
..+ .|.+.... | ...+-=.+|| ==..+.-...+..+-....+|.++++|.+.
T Consensus 140 a~e--~L~~l~~~-~~~~~~fD~iFi------DadK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 140 ALP--VLDQMIED-GKYHGTFDFIFV------DADKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHH--HHHHHHhc-cccCCcccEEEe------cCCHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 544 34442221 1 0011112222 122344445556656666777778888764
No 117
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.51 E-value=6.3e+02 Score=24.27 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCCEEEEeeccccccChHHHHHHHHHHHhcCC--CcEEEEEeecCCCCHHHHHHHHHHHHcCCC
Q 020223 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFS--TAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (329)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~--~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~ 243 (329)
...|+++-=|--..|+++...+++..+.+.|+ .+..+.+|. +|+. +....++.+++.|+.
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~-np~~-lt~e~l~~l~~~Gv~ 112 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEA-NPEL-ITAEWCKGLKGAGIN 112 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEe-CCCC-CCHHHHHHHHHcCCC
Confidence 45688888787778888998999988887664 334455553 5532 223344555555544
No 118
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.50 E-value=4e+02 Score=25.66 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=38.4
Q ss_pred CCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCC
Q 020223 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (329)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~ 243 (329)
...|+++-=|--..|+++...+|+..+.+.++....+..| .+|+ .+....++.+++.|+.
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE-~nP~-~~~~e~l~~l~~~Gvn 110 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTE-ANPN-SATKAWLKGMKNLGVN 110 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEE-eCCC-CCCHHHHHHHHHcCCC
Confidence 4567777777778888888888888887765544445555 3553 2233445555555544
No 119
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=20.97 E-value=2.4e+02 Score=21.61 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=42.2
Q ss_pred cCCCchhHHHHHHhCCCC-CCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcC
Q 020223 163 DLRDIQMLNEVINLANMD-PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRG 241 (329)
Q Consensus 163 DL~~~~~l~~~L~~~g~d-~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g 241 (329)
|+...+.+.+.+.. .+. ....++++----+.|++......|.+.....-..|.-+.+--++| .+.+-|...|
T Consensus 21 ~~~~a~~~~~~l~~-~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~------~v~~~l~~~g 93 (109)
T cd07041 21 DDERAEQLQERLLE-AISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRP------EVAQTLVELG 93 (109)
T ss_pred CHHHHHHHHHHHHH-HHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHhC
Confidence 44444455554322 121 234466665556678888877777777665433333333333332 2333445555
Q ss_pred CCcccccCCCCHH
Q 020223 242 CALLGINATPTLL 254 (329)
Q Consensus 242 ~~l~~~~~~~t~~ 254 (329)
.....++.|+|.+
T Consensus 94 l~~~~~~~~~t~~ 106 (109)
T cd07041 94 IDLSGIRTAATLQ 106 (109)
T ss_pred CChhhceeeccHH
Confidence 5442334455554
No 120
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=20.67 E-value=5.5e+02 Score=25.59 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=45.1
Q ss_pred CCCCEEEEeeccccccChHHHHHHHHHHHhcCC---CcEEEEEeecCCCCHHHHHHHHHHHHcCCC
Q 020223 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS---TAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (329)
Q Consensus 181 ~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~---~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~ 243 (329)
...-|+++==|-=.+|++++..+|+..+.+.|+ +...+..|. +|. .+...+.+.++..|..
T Consensus 86 ~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~-nP~-~~~~e~~~~l~~~GvN 149 (416)
T COG0635 86 REVKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEA-NPG-TVEAEKFKALKEAGVN 149 (416)
T ss_pred CeEEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEe-CCC-CCCHHHHHHHHHcCCC
Confidence 346788888888899999999999999999994 236678886 775 2344455566555544
No 121
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.24 E-value=4.3e+02 Score=25.81 Aligned_cols=59 Identities=10% Similarity=0.262 Sum_probs=45.2
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEE-EeeccccccChHHHHHHHHHHHhcCC
Q 020223 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFI-IAECVLIYLDPDSSRAIVGWASKTFS 213 (329)
Q Consensus 154 ~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~-i~Egvl~YL~~~~~~~ll~~la~~f~ 213 (329)
..+|-.-+.+..+.+.+...++++. ..+.|.++ ++++.+-|+..+....+++.+++..+
T Consensus 15 ~~~yAVgAfN~~n~e~~~avi~AAe-e~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~ 74 (347)
T PRK09196 15 EHGYGVPAFNVNNLEQVQAIMEAAD-ETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP 74 (347)
T ss_pred HcCceEEEeeeCCHHHHHHHHHHHH-HhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence 5688888899999988888887643 34677665 45888888888888888888877543
No 122
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=20.06 E-value=4.7e+02 Score=25.55 Aligned_cols=59 Identities=10% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEE-EeeccccccChHHHHHHHHHHHhcCC
Q 020223 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFI-IAECVLIYLDPDSSRAIVGWASKTFS 213 (329)
Q Consensus 154 ~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~-i~Egvl~YL~~~~~~~ll~~la~~f~ 213 (329)
..+|-.-+.+..+.+.+...++++. ..+.|.++ ++++..-|+..+....+++.+++..+
T Consensus 13 ~~~yAV~AfN~~n~e~~~aii~AAE-e~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~ 72 (347)
T TIGR01521 13 EFGYGVPAFNVNNMEQMRAIMEAAD-KTDSPVILQASRGARSYAGAPFLRHLILAAIEEYP 72 (347)
T ss_pred HcCceEEEEeeCCHHHHHHHHHHHH-HhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCC
Confidence 5688888899999888888877643 44677655 55888899988888888888887653
Done!