Query 020224
Match_columns 329
No_of_seqs 159 out of 1836
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lr8_A CAsp8-associated protei 45.3 6.4 0.00022 27.0 0.0 45 2-48 16-67 (70)
2 3v5w_G G gamma-I, guanine nucl 33.0 62 0.0021 22.6 4.3 61 266-328 2-72 (77)
3 4hfx_A Transcription elongatio 12.1 64 0.0022 23.6 0.7 54 262-315 1-59 (97)
4 3cqb_A Probable protease HTPX 10.9 73 0.0025 23.4 0.8 14 90-103 82-95 (107)
5 3b4r_A Putative zinc metallopr 9.6 2.5E+02 0.0086 23.5 3.8 13 92-104 49-61 (224)
6 2jsd_A Matrix metalloproteinas 6.2 1.6E+02 0.0055 22.9 0.9 15 92-106 109-123 (160)
7 1a0a_A BHLH, protein (phosphat 5.9 2.5E+02 0.0084 18.4 1.6 20 26-45 9-28 (63)
8 1uj8_A ORF3, hypothetical prot 5.8 7.4E+02 0.025 17.1 3.9 45 263-308 3-48 (77)
9 1hy7_A Stromelysin-1, MMP-3; m 5.1 2.1E+02 0.007 22.8 0.9 10 92-101 114-123 (173)
10 2ovx_A Matrix metalloproteinas 5.1 2.1E+02 0.0071 22.4 0.9 10 92-101 112-121 (159)
No 1
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=45.27 E-value=6.4 Score=26.99 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=29.5
Q ss_pred CCCCccccc-------ccccCCCceecCCCCCcHHHHHHHHhhChHHhhhhCCC
Q 020224 2 GWRRGEERE-------EGVMAADFFWSYTDEPHASRRRQILSQYPQIKELFGPD 48 (329)
Q Consensus 2 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~r~~~i~~~~~~~~~l~~~~ 48 (329)
-|.|+|||. .++....|--+...+ . ....++...+.++..||+.+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~Lf~kS 67 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMKLFEKS 67 (70)
Confidence 388999985 455555555555444 2 33356777788888888765
No 2
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=33.02 E-value=62 Score=22.61 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=30.6
Q ss_pred ccccCCCCCCccCHHHHhHhhHhhhhcC-----CCCccHHHHHHHHHh-----CCCCCCCcccccCCCCCccC
Q 020224 266 NEHHDFPRIPGNKLHKVREVAPEYYQGL-----ASYKSWSQVIYMYIM-----DRTVGPFSRMKRKPSATKKS 328 (329)
Q Consensus 266 ~eHHlfP~vP~~~Lp~l~~~~~~~~~~~-----~~~~sy~~~l~~~v~-----~~~~~~~~~~~~~~~~~~~~ 328 (329)
..||-.++--..++.++.+.+.++-.++ ++..+ ..-+.+|+. ||.+...+-.+ ||=+.||+
T Consensus 2 ~~~~~M~s~~ss~i~q~rk~VeQLr~Ea~i~RikVSqa-aadL~~yc~~~~~~DpLl~Gvp~~~-NPFkeKk~ 72 (77)
T 3v5w_G 2 HHHHHMASNNTASIAQARKLVEQLKMEANIDRIKVSKA-AADLMAYCEAHAKEDPLLTPVPASE-NPFREKKF 72 (77)
T ss_dssp ------------CHHHHHHHHHHHHHHHSSCCCCHHHH-HHHHHHHHHHSGGGCTTTSCCCGGG-CTTTTC--
T ss_pred cccccccccchhHHHHHHHHHHHHHHHhccchhhHHHH-HHHHHHHHHhcCCCCCCcCCCCCCC-CCCCCCcC
Confidence 3455555556677999998887765433 22233 233556663 88888777655 77777775
No 3
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=12.06 E-value=64 Score=23.63 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=13.7
Q ss_pred ccccccccCCCCCCccCHHHHhHhh--Hhhhh---cCCCCccHHHHHHHHHhCCCCCCC
Q 020224 262 VGYHNEHHDFPRIPGNKLHKVREVA--PEYYQ---GLASYKSWSQVIYMYIMDRTVGPF 315 (329)
Q Consensus 262 ~~yH~eHHlfP~vP~~~Lp~l~~~~--~~~~~---~~~~~~sy~~~l~~~v~~~~~~~~ 315 (329)
+|.|.-||-..+||+.-|..+=+.. .+++. ..|......+-+|+-.+..+++-.
T Consensus 1 ~~~~~~~~~~~~~Py~lL~PVLek~tp~QL~~IE~~nP~L~~dTdeLWk~~c~rdF~~~ 59 (97)
T 4hfx_A 1 MGHHHHHHSHMGVPYSVLEPVLERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEE 59 (97)
T ss_dssp -------------------CCGGGCCHHHHHHHHTC------CCHHHHHHHC----CCS
T ss_pred CCcccccccccCCcHHHHHHHHccCCHHHHHHHHHhCcccchhhHHHHHHHHHhHCccc
Confidence 4678889999999998886665433 33333 335445556778877776666643
No 4
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=10.95 E-value=73 Score=23.37 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=10.8
Q ss_pred HHHHHHHHhhcccc
Q 020224 90 HNLFLAIHELSHNL 103 (329)
Q Consensus 90 ~~~~~l~He~~H~~ 103 (329)
...++++||.+|..
T Consensus 82 El~aVlaHElgH~~ 95 (107)
T 3cqb_A 82 EAEAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45567899999965
No 5
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=9.58 E-value=2.5e+02 Score=23.51 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=9.2
Q ss_pred HHHHHHhhccccc
Q 020224 92 LFLAIHELSHNLA 104 (329)
Q Consensus 92 ~~~l~He~~H~~~ 104 (329)
..++.||.+|.-.
T Consensus 49 ~~v~~HElgH~~~ 61 (224)
T 3b4r_A 49 VSVVLHELGHSYV 61 (224)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345699999764
No 6
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=6.19 E-value=1.6e+02 Score=22.89 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=10.6
Q ss_pred HHHHHHhhccccccC
Q 020224 92 LFLAIHELSHNLAFS 106 (329)
Q Consensus 92 ~~~l~He~~H~~~~~ 106 (329)
..++.||.||---+.
T Consensus 109 ~~v~~HEiGHaLGL~ 123 (160)
T 2jsd_A 109 FTVAAHEFGHALGLA 123 (160)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHhHhhhcCC
Confidence 456789999975443
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=5.94 E-value=2.5e+02 Score=18.44 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=15.8
Q ss_pred CcHHHHHHHHhhChHHhhhh
Q 020224 26 PHASRRRQILSQYPQIKELF 45 (329)
Q Consensus 26 ~~~~r~~~i~~~~~~~~~l~ 45 (329)
....||..|...+.+++.|.
T Consensus 9 aEr~RR~rIn~~~~~L~~Ll 28 (63)
T 1a0a_A 9 AEQARRNRLAVALHELASLI 28 (63)
T ss_dssp GTHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 45678899999888888764
No 8
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=5.77 E-value=7.4e+02 Score=17.06 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=32.5
Q ss_pred cccccccCCCCCCccCHHHHhHhhHhhhhcC-CCCccHHHHHHHHHh
Q 020224 263 GYHNEHHDFPRIPGNKLHKVREVAPEYYQGL-ASYKSWSQVIYMYIM 308 (329)
Q Consensus 263 ~yH~eHHlfP~vP~~~Lp~l~~~~~~~~~~~-~~~~sy~~~l~~~v~ 308 (329)
+-|.-||--.+|-|..-..+...+.+-+++. |..-.|.. |+++|+
T Consensus 3 ~~~~~~~~~~~lkW~D~~dIA~~L~e~~Pd~DP~tvRFTd-L~~wV~ 48 (77)
T 1uj8_A 3 GSHHHHHHGSGLKWTDSREIGEALYDAYPDLDPKTVRFTD-MHQWIC 48 (77)
T ss_dssp -CCCCCCSSSCBCTTCHHHHHHHHHHHSTTSCGGGCCHHH-HHHHHH
T ss_pred CcccccccCCCCCCcCHHHHHHHHHHHCCCCCcCEeeHHH-HHHHHH
Confidence 4577888899999999999988887766653 44455543 456775
No 9
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=5.12 E-value=2.1e+02 Score=22.75 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=0.0
Q ss_pred HHHHHHhhcc
Q 020224 92 LFLAIHELSH 101 (329)
Q Consensus 92 ~~~l~He~~H 101 (329)
..++.||.||
T Consensus 114 ~~v~~HEiGH 123 (173)
T 1hy7_A 114 FLVAAHEIGH 123 (173)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
No 10
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=5.12 E-value=2.1e+02 Score=22.43 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=0.0
Q ss_pred HHHHHHhhcc
Q 020224 92 LFLAIHELSH 101 (329)
Q Consensus 92 ~~~l~He~~H 101 (329)
..++.||.||
T Consensus 112 ~~va~HEiGH 121 (159)
T 2ovx_A 112 FLVAAHQFGH 121 (159)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Done!