Query 020225
Match_columns 329
No_of_seqs 204 out of 1585
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 2E-105 4E-110 760.8 31.7 323 1-326 22-355 (363)
2 PRK06746 peptide chain release 100.0 8E-102 2E-106 742.4 36.8 320 2-323 1-325 (326)
3 PRK05589 peptide chain release 100.0 4E-101 8E-106 738.9 36.5 319 2-323 1-324 (325)
4 PRK07342 peptide chain release 100.0 1E-100 2E-105 738.3 36.1 321 2-324 3-328 (339)
5 TIGR00020 prfB peptide chain r 100.0 1.4E-99 3E-104 738.6 37.0 320 2-323 39-363 (364)
6 PRK00578 prfB peptide chain re 100.0 8.7E-99 2E-103 734.3 36.0 323 1-325 38-365 (367)
7 TIGR00019 prfA peptide chain r 100.0 2.2E-96 5E-101 714.7 35.7 321 1-326 22-352 (360)
8 PRK00591 prfA peptide chain re 100.0 5.3E-95 1.1E-99 705.5 36.0 322 1-326 21-352 (359)
9 PRK08787 peptide chain release 100.0 5.9E-94 1.3E-98 683.6 32.5 298 24-324 2-304 (313)
10 KOG2726 Mitochondrial polypept 100.0 2.5E-85 5.5E-90 633.7 28.1 315 2-328 57-381 (386)
11 COG1186 PrfB Protein chain rel 100.0 1.6E-75 3.4E-80 537.0 18.2 233 90-323 1-238 (239)
12 TIGR03072 release_prfH putativ 100.0 6.2E-65 1.4E-69 459.7 22.6 192 90-287 1-198 (200)
13 PRK08179 prfH peptide chain re 100.0 2.3E-64 5.1E-69 456.0 21.4 191 90-286 2-198 (200)
14 PF00472 RF-1: RF-1 domain; I 100.0 7.4E-33 1.6E-37 230.8 8.6 106 190-296 4-113 (113)
15 PF03462 PCRF: PCRF domain; I 100.0 1.5E-31 3.3E-36 223.4 11.5 108 50-157 4-115 (115)
16 PRK09256 hypothetical protein; 99.7 3E-18 6.5E-23 147.6 7.4 68 191-258 6-100 (138)
17 KOG3429 Predicted peptidyl-tRN 99.2 3E-11 6.5E-16 105.7 6.7 67 192-258 34-128 (172)
18 PF13710 ACT_5: ACT domain; PD 58.8 27 0.00058 25.8 5.0 38 111-148 6-43 (63)
19 COG0216 PrfA Protein chain rel 53.7 75 0.0016 31.8 8.5 63 13-75 37-102 (363)
20 KOG1760 Molecular chaperone Pr 51.8 1.6E+02 0.0034 25.4 9.2 70 7-76 15-101 (131)
21 PRK06737 acetolactate synthase 50.3 50 0.0011 25.8 5.5 39 111-149 16-54 (76)
22 TIGR02421 QEGLA conserved hypo 50.0 19 0.00042 36.2 3.9 164 7-177 16-211 (366)
23 PF03962 Mnd1: Mnd1 family; I 47.3 1.8E+02 0.0039 26.3 9.5 72 7-80 56-127 (188)
24 PRK11152 ilvM acetolactate syn 46.6 47 0.001 25.8 4.8 41 111-151 17-57 (76)
25 PRK13562 acetolactate synthase 39.7 83 0.0018 25.1 5.3 36 114-149 19-55 (84)
26 PF00587 tRNA-synt_2b: tRNA sy 38.4 98 0.0021 26.8 6.2 46 101-146 121-167 (173)
27 PF08014 DUF1704: Domain of un 35.1 1.1E+02 0.0024 30.6 6.5 71 100-177 108-188 (349)
28 KOG4657 Uncharacterized conser 32.6 1.2E+02 0.0025 28.8 5.8 69 14-88 50-119 (246)
29 PF14257 DUF4349: Domain of un 26.7 2.9E+02 0.0062 25.8 7.6 39 58-96 164-203 (262)
30 TIGR01219 Pmev_kin_ERG8 phosph 25.6 2E+02 0.0043 29.9 6.7 54 77-133 384-442 (454)
31 PF09418 DUF2009: Protein of u 25.3 6.4E+02 0.014 26.3 10.2 78 68-167 221-313 (458)
32 PF09032 Siah-Interact_N: Siah 25.0 2.8E+02 0.006 21.9 6.0 45 30-78 4-48 (79)
33 PRK08178 acetolactate synthase 24.7 1.5E+02 0.0032 24.3 4.5 35 115-149 26-60 (96)
34 KOG2148 Exocyst protein Sec3 [ 24.5 6.7E+02 0.015 27.7 10.4 14 99-112 306-319 (867)
35 PF10146 zf-C4H2: Zinc finger- 24.3 5.6E+02 0.012 24.1 9.0 55 20-74 16-71 (230)
36 KOG0971 Microtubule-associated 24.2 4.3E+02 0.0094 30.1 9.1 61 24-87 292-357 (1243)
37 PRK11020 hypothetical protein; 24.1 3.7E+02 0.0081 22.8 6.8 23 53-75 28-50 (118)
38 PF15011 CK2S: Casein Kinase 2 24.1 5.1E+02 0.011 23.0 8.3 38 91-128 114-153 (168)
39 PF15290 Syntaphilin: Golgi-lo 23.9 5.7E+02 0.012 25.1 9.0 64 21-84 74-145 (305)
40 cd01020 TroA_b Metal binding p 23.8 2.1E+02 0.0045 26.8 6.1 21 3-23 93-113 (264)
41 cd01145 TroA_c Periplasmic bin 22.8 1.8E+02 0.0039 26.1 5.3 21 3-23 106-126 (203)
42 PRK07417 arogenate dehydrogena 21.5 2.4E+02 0.0053 26.5 6.1 21 26-46 236-256 (279)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-105 Score=760.84 Aligned_cols=323 Identities=21% Similarity=0.327 Sum_probs=308.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhH----HH
Q 020225 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQ----YE 76 (329)
Q Consensus 1 m~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~----le 76 (329)
+|+||++.+|++++++++++++.|.+++.+|.+|++..+++.++.+|+.++ .|+||.+++++|+..++..+.. |+
T Consensus 22 ~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~~Ei~~~~~~~~~le~~L~ 100 (363)
T COG0216 22 LLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAEEEIKELEAKIEELEEELK 100 (363)
T ss_pred HhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999764 7999999999999999887755 45
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEecccccccccc
Q 020225 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (329)
Q Consensus 77 ~~lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~ 156 (329)
..+||+||+|.+||+|||+||+||+||++||++||+||.+||+.+||++++++.++++.||||++++.|+|.+||+.|||
T Consensus 101 ~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~I~G~gvys~LKf 180 (363)
T COG0216 101 ILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIASISGKGVYSRLKF 180 (363)
T ss_pred HhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEEEeccchhhhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEE
Q 020225 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (329)
Q Consensus 157 E~GvHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~ 231 (329)
|+|||||| +|.|+++||+||| |+|+|+|+++ +..++.|+|+||+|+| |||+ |||||||+|||||||+||||+|.
T Consensus 181 EsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~e-e~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAVRiTHlPTGIvV~ 259 (363)
T COG0216 181 ESGVHRVQRVPATESQGRIHTSAATVAVLPEVE-EVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 259 (363)
T ss_pred ccCccceeccccccCCCceeecceeEEeccCCC-cccccccChHHceeeeeecCCCCCCCcCccchhheeeecCCceEEE
Confidence 99999999 9999999999999 9999999983 3347999999999999 9999 79999999999999999999999
Q ss_pred ecCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccC-CCCCceeeecCCCCccccccccccccCcccccCC
Q 020225 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310 (329)
Q Consensus 232 ~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G 310 (329)
||++||||+||++||++|++||++.+.++++++.++.|++|++++ |+++|||||| ||+||||||+|+++|+|+.||+|
T Consensus 260 cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNf-PQnRVTDHRI~lTl~kLd~vm~g 338 (363)
T COG0216 260 CQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNF-PQNRVTDHRINLTLYKLDEVMEG 338 (363)
T ss_pred ecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCC-CCCcccchhcccccccHHHHhcc
Confidence 999999999999999999999999999999999999999999994 9999999999 99999999999999999999995
Q ss_pred -CcHHHHHHHHHccccc
Q 020225 311 -NIKPFIEAHINSRRSS 326 (329)
Q Consensus 311 -~ld~~i~~~~~~~~~~ 326 (329)
+||++|++++.+.+.+
T Consensus 339 G~LDeii~aLi~~~q~~ 355 (363)
T COG0216 339 GKLDEIIDALIAEDQAE 355 (363)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 9999999998876643
No 2
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=8.3e-102 Score=742.36 Aligned_cols=320 Identities=29% Similarity=0.473 Sum_probs=311.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~lll 81 (329)
|..|+||+|++++++++++++.|+++++.|+++.+..++++++.+|+++ +.|++|.+++.+++..|+..++++++.+||
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-~~d~e~~~~a~~e~~~l~~~l~~le~~~l~ 79 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE-EYDEDLHEELESEVKGLIQEMNEYELQLLL 79 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999999999999999999999999999999999999965 469999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccccc
Q 020225 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (329)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~GvH 161 (329)
++|+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||
T Consensus 80 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvH 159 (326)
T PRK06746 80 SDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVH 159 (326)
T ss_pred CCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCcc
Q 020225 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGER 236 (329)
Q Consensus 162 Rv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~R 236 (329)
||| +|||+++|||||| |+|+|+|.+. +++++.|+++||+|+| |||| |||||||+|||||+|+||||+|+||++|
T Consensus 160 rv~Rvsp~~s~~rrhTsfa~V~v~P~~~-~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~~R 238 (326)
T PRK06746 160 RLVRISPFDSSGRRHTSFVSCEVVPEFN-DEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSER 238 (326)
T ss_pred EEEecCCCCCCCCeEeeEEEEEEecCcC-CccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECCCC
Confidence 999 9999999999999 9999999974 3588999999999999 9999 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHHH
Q 020225 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFI 316 (329)
Q Consensus 237 Sq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~i 316 (329)
||++||+.||++|++||++.+.+++.++.++.|++|++++||+||||||||||+||||||||++++||+.||+|+||+||
T Consensus 239 SQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtYnf~p~~rVtDhR~~~~~~~l~~vl~G~ld~~I 318 (326)
T PRK06746 239 SQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFI 318 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCCeEEEECCCCceeeeeecCceecChHHhhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcc
Q 020225 317 EAHINSR 323 (329)
Q Consensus 317 ~~~~~~~ 323 (329)
++++.|+
T Consensus 319 ~~~~~~~ 325 (326)
T PRK06746 319 DAYLRSR 325 (326)
T ss_pred HHHHHcc
Confidence 9999875
No 3
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.7e-101 Score=738.95 Aligned_cols=319 Identities=30% Similarity=0.517 Sum_probs=308.5
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~lll 81 (329)
|++|+||+||+++++++++++.|+++++.|++|+..++|++++.+|+++ .|+++++++.+++..|++.++++++.+||
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~--~d~e~~~~a~~e~~~l~~~l~~~e~~~l~ 78 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE--EDDEMKKEIISEVKNIKEEIDRFKIETLL 78 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999964 37889999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccccc
Q 020225 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (329)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~GvH 161 (329)
++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++..+++.+|||||++.|+|++||++|++|+|||
T Consensus 79 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvH 158 (325)
T PRK05589 79 SGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIH 158 (325)
T ss_pred CCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCcc
Q 020225 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGER 236 (329)
Q Consensus 162 Rv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~R 236 (329)
||| +|||+++|||||| |+|+|+|.+. +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|+||++|
T Consensus 159 rv~r~s~~~~~~rr~ts~a~V~VlP~~~-~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~eR 237 (325)
T PRK05589 159 RLVRISPFNANGKRQTSFASVEVLPELT-DDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNER 237 (325)
T ss_pred EEEEcCCCCCCCCeEeeeEEEEEecCcC-ccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECCcc
Confidence 999 9999999999999 9999999984 3458899999999999 8999 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHHH
Q 020225 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFI 316 (329)
Q Consensus 237 Sq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~i 316 (329)
||++||+.|+++|++||++.+.+++.++.++.|+.+...+||++|||||||||+||||||||++++||+.||+|+||+||
T Consensus 238 SQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~p~~rVtDhR~g~~~~~l~~vl~G~Ld~~I 317 (325)
T PRK05589 238 SQHSNKETAMKMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHRTGVETSNVDSVMDGDIDNFI 317 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCceeeECCCCceeeeeccCceecChHHhhCCCHHHHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHcc
Q 020225 317 EAHINSR 323 (329)
Q Consensus 317 ~~~~~~~ 323 (329)
++++.|.
T Consensus 318 ~a~l~~~ 324 (325)
T PRK05589 318 TQYLKGN 324 (325)
T ss_pred HHHHhhc
Confidence 9999873
No 4
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=9.6e-101 Score=738.29 Aligned_cols=321 Identities=27% Similarity=0.456 Sum_probs=310.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~lll 81 (329)
+++|+||+||+++++++++++.|+.+++.|+++....++++++.+|++++ .|++|++++..++..+.+.++++++..||
T Consensus 3 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~e-~D~el~~~a~~e~~~l~~~l~~~el~~lL 81 (339)
T PRK07342 3 AEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEE-GDKSIVEDAEKTIRDLKDEIDRRQIDALL 81 (339)
T ss_pred ccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999754 59999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccccc
Q 020225 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (329)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~GvH 161 (329)
.+|+|.++|+|+|+||+||+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||
T Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvH 161 (339)
T PRK07342 82 SGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVH 161 (339)
T ss_pred CCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCcc
Q 020225 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGER 236 (329)
Q Consensus 162 Rv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~R 236 (329)
||| +|||+++|||||| |+|+|+|.+. +.+++.|+++||+|++ |||| |||||||+|||||+|+||||+|+||++|
T Consensus 162 rv~rvsp~~~~~rrhTs~a~V~VlP~~~-~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~~eR 240 (339)
T PRK07342 162 RLVRISPYDSNARRHTSFASIWVYPVID-DNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQER 240 (339)
T ss_pred EEEecCCCCCCCCeEeEEEEEEEEcCCC-cccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEECCcc
Confidence 999 9999999999999 9999999984 3468899999999999 9999 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHHH
Q 020225 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFI 316 (329)
Q Consensus 237 Sq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~i 316 (329)
||++||+.||++|+++|++.+.+++.++.++.|..+...+||++|||||||||+||||||||++++||+.||+|+||+||
T Consensus 241 SQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i~~g~~IRtY~~~p~~rVtDhRtg~~~~~l~~vl~G~Ld~~I 320 (339)
T PRK07342 241 SQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDIGWGHQIRSYVLQPYQLVKDLRTGVESTNPQDVLDGDLNEFM 320 (339)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCcCCccCCCCceeeeeccCceecChHHhhCCCHHHHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHccc
Q 020225 317 EAHINSRR 324 (329)
Q Consensus 317 ~~~~~~~~ 324 (329)
++++.|+.
T Consensus 321 ~a~l~~~~ 328 (339)
T PRK07342 321 EAALAHRI 328 (339)
T ss_pred HHHHHHHh
Confidence 99999853
No 5
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=1.4e-99 Score=738.65 Aligned_cols=320 Identities=32% Similarity=0.500 Sum_probs=310.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~lll 81 (329)
|++|+||+||+++++++++++.|+++++.|+++++.+++++++.+|+++ +.|++|++++.+++..+...++++++..||
T Consensus 39 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~-e~D~e~~~~a~~e~~~l~~~l~~le~~~ll 117 (364)
T TIGR00020 39 MEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVE-EDDEETFNELDAELKALEKKLAELELRTML 117 (364)
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999965 469999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccccc
Q 020225 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (329)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~GvH 161 (329)
++|+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+||++|++.|+|++||++|++|+|||
T Consensus 118 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvH 197 (364)
T TIGR00020 118 SGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVH 197 (364)
T ss_pred CCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCcc
Q 020225 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGER 236 (329)
Q Consensus 162 Rv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~R 236 (329)
||| +|||+++|||||| |+|+|+|.+++ ++++.|+++||+|++ |||| |||||||+|||||||+||||+|+||++|
T Consensus 198 rv~rvs~~~~~~rrhts~a~V~vlP~~~~-~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~saVri~H~ptgi~v~~q~~R 276 (364)
T TIGR00020 198 RLVRISPFDANGRRHTSFASVFVMPEVDD-DIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDR 276 (364)
T ss_pred EEEecCCCCCCCCeEeeeEEEEEecCCCc-ccceecccccEEEEEeeCCCCCCccccccceEEEEEECCCcEEEEECCcc
Confidence 999 9999999999999 99999999743 578999999999999 8999 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHHH
Q 020225 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFI 316 (329)
Q Consensus 237 Sq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~i 316 (329)
||++||+.||++|++||++++.++++++.++.|+++...+||+||||||||||+||||||||++++||+.||+|+||+||
T Consensus 277 SQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtY~~~~~~rVtDhR~g~~~~~l~~vl~G~Ld~~I 356 (364)
T TIGR00020 277 SQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGSQIRSYVLHPYSMVKDLRTGYETGNVQAVLDGDIDQFI 356 (364)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCeEEEECCCCCcccccccCCeecChHHHhCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcc
Q 020225 317 EAHINSR 323 (329)
Q Consensus 317 ~~~~~~~ 323 (329)
++++.|+
T Consensus 357 ~a~~~~~ 363 (364)
T TIGR00020 357 EAYLKWK 363 (364)
T ss_pred HHHHhhh
Confidence 9999875
No 6
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=8.7e-99 Score=734.32 Aligned_cols=323 Identities=34% Similarity=0.523 Sum_probs=311.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 020225 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80 (329)
Q Consensus 1 m~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~ll 80 (329)
+|++|+||+||+++++++++++.|+++++.|++++..+++++++.+|++++ .|++|+++|.+++..+...++++++..|
T Consensus 38 ~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e-~D~el~~~a~~e~~~l~~~l~~le~~~l 116 (367)
T PRK00578 38 EAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEE-DDEETLAEAEAELKALEKKLAALELERL 116 (367)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999654 5999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEecccccccccccccc
Q 020225 81 LRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGA 160 (329)
Q Consensus 81 l~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~Gv 160 (329)
|++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++.++++.+||++|++.|+|++||++|++|+||
T Consensus 117 l~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~~~i~G~~a~~~lk~E~Gv 196 (367)
T PRK00578 117 LSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGV 196 (367)
T ss_pred cCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEEEEEeccCHHHHHhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCc
Q 020225 161 HCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGE 235 (329)
Q Consensus 161 HRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~ 235 (329)
|||| +|||+++|||||| |+|+|+|.+. +..++.|+++||+|++ |||| |||||||+|||||+|+||||+|+||++
T Consensus 197 Hrvqrvs~~~~~~r~hts~~~V~vlP~~~-~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~ 275 (367)
T PRK00578 197 HRLVRISPFDSAGRRHTSFASVEVYPEVD-DTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNE 275 (367)
T ss_pred EEEEecCCCCCCCceecceeeEEecCCCC-CccccccChhhEEEEEeeCCCCCCCcccceeeEEEEEECCCcEEEEECCC
Confidence 9999 9999999999999 9999999974 2457899999999999 8999 799999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHH
Q 020225 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPF 315 (329)
Q Consensus 236 RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~ 315 (329)
|||++||+.||++|++||++.+.+++.++.++.|+.+...+||+|||||||+||+||||||||++++||+.||+|+||+|
T Consensus 276 RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtYn~~p~~rVtDhR~g~~~~~l~~vl~G~ld~~ 355 (367)
T PRK00578 276 RSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWGSQIRSYVLHPYQMVKDLRTGYETGNTQAVLDGDLDGF 355 (367)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCeEEEECCCCceeeeeccCceecCHHHhhCCChHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHcccc
Q 020225 316 IEAHINSRRS 325 (329)
Q Consensus 316 i~~~~~~~~~ 325 (329)
|++++.+...
T Consensus 356 I~~l~~~~~~ 365 (367)
T PRK00578 356 IEAYLRWRAS 365 (367)
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 7
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=2.2e-96 Score=714.73 Aligned_cols=321 Identities=23% Similarity=0.338 Sum_probs=304.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHh--
Q 020225 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS-- 78 (329)
Q Consensus 1 m~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~-- 78 (329)
++++|+||+|++++++++++++.|+.+++.|+++.....++.++.+|+++ .|++|++++.+++..+...+++++..
T Consensus 22 ~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~a~~e~~~l~~~~~~~e~~l~ 99 (360)
T TIGR00019 22 LLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREMAKEELEELEEKIEELEEQLK 99 (360)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999864 58999999999999999998888743
Q ss_pred --hcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEecccccccccc
Q 020225 79 --KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (329)
Q Consensus 79 --lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~ 156 (329)
+||++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++..+++.+|||+|++.|+|++||++|++
T Consensus 100 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~ 179 (360)
T TIGR00019 100 VLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKF 179 (360)
T ss_pred HHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcceEEEEEEecccHHHHHhh
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEE
Q 020225 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (329)
Q Consensus 157 E~GvHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~ 231 (329)
|+|||||| +|||++++|+||| |+|+|+|.+. ++.+.|+++||+|+| |||| |||||||+|||||||+||||+|.
T Consensus 180 E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~--~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~SaVrl~h~ptgi~V~ 257 (360)
T TIGR00019 180 ESGVHRVQRVPVTESQGRIHTSAATVAVMPELE--EVEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 257 (360)
T ss_pred cCeeEEEECCCCCCCCCCeecceeEEEEEcCCC--ccccccCcccEEEEEEECCCCCCCCcCceeeeEEEEECCCcEEEE
Confidence 99999999 9999999999999 9999999974 367899999999999 8999 79999999999999999999999
Q ss_pred ecCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccc-CCCCCceeeecCCCCccccccccccccCcccccCC
Q 020225 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN-IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310 (329)
Q Consensus 232 ~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G 310 (329)
||++|||++||+.||++|+++|++...+++.++....|+.+++. .||+||||||| |++||||||||++++||++||+|
T Consensus 258 ~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~-~~~rV~DhRtg~~~~~l~~vl~G 336 (360)
T TIGR00019 258 CQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNF-PQNRVTDHRINLTLYKLDEVLEG 336 (360)
T ss_pred ECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEEC-CCCeeeeeccCCeEcChHHHhCC
Confidence 99999999999999999999999999988888888888777776 69999999999 88999999999999999999999
Q ss_pred CcHHHHHHHHHccccc
Q 020225 311 NIKPFIEAHINSRRSS 326 (329)
Q Consensus 311 ~ld~~i~~~~~~~~~~ 326 (329)
+||+||++++.+...+
T Consensus 337 ~Ld~~I~~~l~~~~~~ 352 (360)
T TIGR00019 337 DLDELIEALIAEDQAQ 352 (360)
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999999999886543
No 8
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=5.3e-95 Score=705.47 Aligned_cols=322 Identities=23% Similarity=0.338 Sum_probs=305.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHH---
Q 020225 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM--- 77 (329)
Q Consensus 1 m~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~--- 77 (329)
+|++|+||+||+++++++++++.|+++++.|+++....+++.++.+|+++ ++|++|.+++.+++..+...+++++.
T Consensus 21 ~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~-e~D~~~~~~~~~e~~~l~~~l~~~e~~l~ 99 (359)
T PRK00591 21 LLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE-ESDPEMREMAKEELKELEERLEELEEELK 99 (359)
T ss_pred HhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999864 46999999999999999988887773
Q ss_pred -hhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEecccccccccc
Q 020225 78 -SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (329)
Q Consensus 78 -~lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~ 156 (329)
.+||++|+|.++|+|+|+||+||+||++||++|++||.+||+++||++++++..+++.+||++|++.|+|++||++|++
T Consensus 100 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~Lk~ 179 (359)
T PRK00591 100 ILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKF 179 (359)
T ss_pred HHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCceeEEEEEEecccHHHHHhh
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEE
Q 020225 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (329)
Q Consensus 157 E~GvHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~ 231 (329)
|+|||||| +|||++++|+||| |+|+|+|.+.+ +++.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 180 E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptGi~v~ 257 (359)
T PRK00591 180 ESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE--VEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 257 (359)
T ss_pred cCeeEEEEeeCCCCCCCceecceEEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCccceeeeEEEEECCCcEEEE
Confidence 99999999 9999999999999 99999999843 68899999999999 8999 79999999999999999999999
Q ss_pred ecCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccc-CCCCCceeeecCCCCccccccccccccCcccccCC
Q 020225 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN-IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310 (329)
Q Consensus 232 ~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G 310 (329)
||++|||++||+.||++|+++|++.+.+++.++.++.|+.+++. .||++|||||| |++||||||||++++||++||+|
T Consensus 258 ~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f-~~~~V~DhRtg~~~~~l~~vl~G 336 (359)
T PRK00591 258 CQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNF-PQGRVTDHRINLTLYKLDEVMEG 336 (359)
T ss_pred ECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEEC-CCCeeeeeccCCEEcChHHHhCC
Confidence 99999999999999999999999999999999999888888887 59999999999 66899999999999999999999
Q ss_pred CcHHHHHHHHHccccc
Q 020225 311 NIKPFIEAHINSRRSS 326 (329)
Q Consensus 311 ~ld~~i~~~~~~~~~~ 326 (329)
+||+||++++.+.+.+
T Consensus 337 ~Ld~fI~~~l~~~~~~ 352 (359)
T PRK00591 337 DLDELIDALIAEDQAE 352 (359)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999886543
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=5.9e-94 Score=683.59 Aligned_cols=298 Identities=29% Similarity=0.404 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCceEEEecCCCCchH
Q 020225 24 SLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103 (329)
Q Consensus 24 L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~lll~~~~D~~~~~leI~aG~GG~Ea 103 (329)
|+..++.|+++...++|+.+|++|++++ .|++|.+++.+++..++..++++++..||++|+|.++|+|+|+||+||+||
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~~-~d~e~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~Ea 80 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAESE-QDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEA 80 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHHH
Confidence 6788999999999999999999999765 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccccceee-cCCCCCCCCccce-eeEE
Q 020225 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATL-ACVD 181 (329)
Q Consensus 104 ~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~GvHRv~-~sp~~~~~rr~ts-~~V~ 181 (329)
++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||||| +|||+++|||||| |+|+
T Consensus 81 ~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV~ 160 (313)
T PRK08787 81 QDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVF 160 (313)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999 9999
Q ss_pred eeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCccCHHHHHHHHHHHHHHHHHHHHH
Q 020225 182 VVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVG 258 (329)
Q Consensus 182 V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~l~~~~~ 258 (329)
|+|.++ +.+++.|+++||+|+| |||| |||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++.+.
T Consensus 161 V~P~~~-~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~~ 239 (313)
T PRK08787 161 VSPEVD-DNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEV 239 (313)
T ss_pred EecCcC-cccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 3568999999999999 8999 79999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHHHHHHHHccc
Q 020225 259 EQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRR 324 (329)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~i~~~~~~~~ 324 (329)
+++.++.+..+......+||++|||||||| +||||||||++++|+++||+|+||+||++++.|..
T Consensus 240 e~~~~~~~~~~~~k~~i~~g~qIRtY~f~~-~~V~DhRtg~~~~~l~~vldG~ld~fI~a~l~~~~ 304 (313)
T PRK08787 240 QKRNAEKDALEATKSDIGWGSQIRNYVLDQ-SRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGL 304 (313)
T ss_pred HHHHHHHHHHhhhhhhCcccccccceeCCC-CcceeeccCceEcChhHhhCCChHHHHHHHHHHHH
Confidence 999998888886666678999999999966 68999999999999999999999999999998854
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-85 Score=633.67 Aligned_cols=315 Identities=32% Similarity=0.481 Sum_probs=281.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH----HHHhHHHH
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVS----KLLDQYEM 77 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~----~~~~~le~ 77 (329)
+++-++|+|+.+.-. ++..+.+....+.++..+..|..+ .+|++|.++|.+|+..+. ..+++|++
T Consensus 57 ~~~~~~~~~~~~l~~----------~~~~l~~~~~~~~~~~~lk~l~~~-~e~e~~~~~a~~E~~~~~~~i~~~~~~l~~ 125 (386)
T KOG2726|consen 57 SNDSDLWDDPAELDE----------VLNALSDRMKLVRELKSLKSLIKE-GEDEDMDELAEEEAEEISKEIERSLHELEL 125 (386)
T ss_pred hchhhhhhhhHHHHH----------HHHHHHHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888773322 333333333333344334444444 468888888888877655 45577899
Q ss_pred hhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccc
Q 020225 78 SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (329)
Q Consensus 78 ~lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E 157 (329)
.+||+++||.++|+|||+||+||+||++|+.+|++||.+||+++||++++++.++++.+||++|++.|+|.+|||+|++|
T Consensus 126 ~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~l~~E 205 (386)
T KOG2726|consen 126 SLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGYLKFE 205 (386)
T ss_pred HhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEe
Q 020225 158 TGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQS 232 (329)
Q Consensus 158 ~GvHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~ 232 (329)
.|||||| +|+++++||+||| ++|.|+|.+..+++.+.++++||+|++ +||| |||||||+|||||+|+||||+|+|
T Consensus 206 ~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTGIvv~c 285 (386)
T KOG2726|consen 206 AGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTGIVVEC 285 (386)
T ss_pred CcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeecCceEEEe
Confidence 9999999 9999999999999 999999999666799999999999999 8999 799999999999999999999999
Q ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccc-CCCCCceeeecCCCCccccccccccccCcccccCCC
Q 020225 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN-IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGN 311 (329)
Q Consensus 233 ~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ 311 (329)
|+|||||+||+.||.+|++||+..+.++...+.++.|+.++++ .|+++|||||| +++||+|||+|++.+++.+||+|+
T Consensus 286 q~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~-~q~rv~D~r~~~~~~d~~~~l~G~ 364 (386)
T KOG2726|consen 286 QEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNF-KQDRVTDHRIGLESHDLESFLDGN 364 (386)
T ss_pred ecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceeeccc-CccchhhhhhcccccchHHHHhcc
Confidence 9999999999999999999999999999999999999999996 79999999999 677899999999999999999999
Q ss_pred cHHHHHHHHHcccccCC
Q 020225 312 IKPFIEAHINSRRSSDT 328 (329)
Q Consensus 312 ld~~i~~~~~~~~~~~~ 328 (329)
||+||++++.+...+++
T Consensus 365 Ld~li~~~~~~~~~~~~ 381 (386)
T KOG2726|consen 365 LDELIEALLSLRREEDL 381 (386)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 99999999998887764
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-75 Score=537.01 Aligned_cols=233 Identities=34% Similarity=0.533 Sum_probs=228.1
Q ss_pred ceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccccceee-cCCC
Q 020225 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPN 168 (329)
Q Consensus 90 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~GvHRv~-~sp~ 168 (329)
|+|+|+||+||+|||+||.||++||++||+++||++++++..+|+.+|+||++|.|+|++|||+|+.|.|||||+ +|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCccCHHHHHHH
Q 020225 169 GSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMK 244 (329)
Q Consensus 169 ~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~RSq~~Nk~~ 244 (329)
++.|||||| ++|.|+|.+. +++.+.|+++||+|+| |||| |||||||+|||||||+||||+|.||.+||||+|++.
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~-~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~ 159 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELD-ISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKAL 159 (239)
T ss_pred CcCcccccceeeeeecCCCC-cccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHH
Confidence 999999999 9999999986 6789999999999999 9999 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHHHHHHHHcc
Q 020225 245 ALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323 (329)
Q Consensus 245 A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~i~~~~~~~ 323 (329)
||..|+.+|+..+.+++.++.+..+..+..++||++||+|.|+|+..|+|||++++..+...||+|++|.||++++.+.
T Consensus 160 a~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg~~~~~~~~~l~~~ 238 (239)
T COG1186 160 ARKMLKGKLYILAQEKRSQEKNRERALKKLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDGDKDGFIKAYLKWD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCCccccccccccceeeccHHHhhhhhHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998764
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=6.2e-65 Score=459.74 Aligned_cols=192 Identities=18% Similarity=0.166 Sum_probs=184.5
Q ss_pred ceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC-CCeeEEEEEEeccccccccccccccceee-cCC
Q 020225 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLI-NFP 167 (329)
Q Consensus 90 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~-~g~k~~~~~i~G~~ay~~lk~E~GvHRv~-~sp 167 (329)
++|||+||+||+||++||++||+||++||+++||++++++..+++. |||++|+|.|+|++||++|+.|.|+|+|+ .||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999987 57999999999999999999999999999 999
Q ss_pred CCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCccCHHHHHH
Q 020225 168 NGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGERNHFANKM 243 (329)
Q Consensus 168 ~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~RSq~~Nk~ 243 (329)
|+++++|||| |+|.|+|. ++.|+++||+|++ |||| |||||||+|||||+|+||||+|+||++|||++||+
T Consensus 81 ~r~~~~R~ts~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 154 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA------SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKR 154 (200)
T ss_pred CCCCCCeeEEEEEEEEecC------ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHH
Confidence 9999999999 99999985 3468999999999 9999 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecC
Q 020225 244 KALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSH 287 (329)
Q Consensus 244 ~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~ 287 (329)
.||++|+++|++.+.++++++.+..|.++..++||+|||||+|+
T Consensus 155 ~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~Rg~~iRty~~~ 198 (200)
T TIGR03072 155 LATLLLAVRLADLQQEQAAALRAERRTAHHQIERGNPVRVFKGE 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeeCC
Confidence 99999999999999999999999999999999999999999993
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=2.3e-64 Score=455.99 Aligned_cols=191 Identities=17% Similarity=0.135 Sum_probs=184.1
Q ss_pred ceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC-CCeeEEEEEEeccccccccccccccceee-cCC
Q 020225 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLI-NFP 167 (329)
Q Consensus 90 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~-~g~k~~~~~i~G~~ay~~lk~E~GvHRv~-~sp 167 (329)
++|||+||+||+||++||++||+||++||+++||++++++..+++. ||||+|++.|+|++||++|+.|.|+|+|+ .||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6999999999999999999999999999999999999999999997 56999999999999999999999999999 999
Q ss_pred CCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCccCHHHHHH
Q 020225 168 NGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGERNHFANKM 243 (329)
Q Consensus 168 ~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~RSq~~Nk~ 243 (329)
|+++++|||| |+|+|+|. ++.|+++||+|+| +||| |||||||+|||||+|+||||+|+||++|||++||+
T Consensus 82 ~~~~~~R~~s~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 155 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSA------DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKR 155 (200)
T ss_pred CCCCCCceEEEEEEEEeCC------cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHH
Confidence 9999999999 99999976 3478999999999 9999 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeec
Q 020225 244 KALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVS 286 (329)
Q Consensus 244 ~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~ 286 (329)
.|+++|+++|++.+.++++++.++.|.++..++||+|||||..
T Consensus 156 ~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 156 LARLLIAWKLEQQQQEQSAALKSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeec
Confidence 9999999999999999999999999999999999999999975
No 14
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=99.98 E-value=7.4e-33 Score=230.76 Aligned_cols=106 Identities=26% Similarity=0.396 Sum_probs=99.3
Q ss_pred CCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 020225 190 SPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVS 266 (329)
Q Consensus 190 ~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~ 266 (329)
...+.|+++||.|++ |||| |||||||+|+|+|+|.||||+|+|+++|||+.||+.|+++|+++|.....++......
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~ 83 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTR 83 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999 9999 7999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHhhccc-cCCCCCceeeecCCCCcccccc
Q 020225 267 CIKREAIV-NIWQRETRRYVSHPYKLVQDVK 296 (329)
Q Consensus 267 ~~~~~~~~-~~rg~~IRtY~~~~~~~V~DhR 296 (329)
..|+.+.. ..|+++||+|+| |+++|||||
T Consensus 84 ~~~~~~~~~~~~~~~iR~y~~-~~~~vk~~R 113 (113)
T PF00472_consen 84 EIRKSQVKRLERKKKIRTYNF-PRSRVKDHR 113 (113)
T ss_dssp TTTTTSCCCSSTTSEEEEEET-TTTEEEETT
T ss_pred HHHHHHHhHHhhhcceecccC-ChhhcccCC
Confidence 88888888 589999999999 999999998
No 15
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=99.97 E-value=1.5e-31 Score=223.41 Aligned_cols=108 Identities=33% Similarity=0.467 Sum_probs=98.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHhHHHHh----hcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeE
Q 020225 50 MEAIDYGLFKRAYRASLDVSKLLDQYEMS----KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125 (329)
Q Consensus 50 ~~~~D~e~~~~a~~e~~~l~~~~~~le~~----lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~ 125 (329)
++++|+||++++.+++..+.+.++.++.. ++|++++|.++|+|||+||+||+||++||++|++||++||+++||++
T Consensus 4 ~~~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~ 83 (115)
T PF03462_consen 4 EEEEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKV 83 (115)
T ss_dssp CCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EE
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 34679999999999999999999887755 88999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCeeEEEEEEeccccccccccc
Q 020225 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (329)
Q Consensus 126 ~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E 157 (329)
++++..+++.+|+|+|++.|+|++||++||+|
T Consensus 84 ~~l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 84 EVLDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EEEecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 99999999999999999999999999999987
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.74 E-value=3e-18 Score=147.56 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=61.5
Q ss_pred CCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEe------eC-----------------Ce-eEEEecCccCHHHHHH
Q 020225 191 PDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQH------IP-----------------TG-IAVQSLGERNHFANKM 243 (329)
Q Consensus 191 ~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H------~p-----------------tg-i~v~~~~~RSq~~Nk~ 243 (329)
.++.|+.+||++.| |||| |||||||+|+|+|+| +| +| |+|+|+++|||++|++
T Consensus 6 ~~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~ 85 (138)
T PRK09256 6 RRLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRE 85 (138)
T ss_pred ccCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHH
Confidence 35779999999999 9999 799999999999996 77 35 9999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020225 244 KALNRLKAKLLVIVG 258 (329)
Q Consensus 244 ~A~~~L~~~l~~~~~ 258 (329)
.|+++|.++|.....
T Consensus 86 ~al~kL~~~i~~~~~ 100 (138)
T PRK09256 86 DALERLVALIREALK 100 (138)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998654
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3e-11 Score=105.65 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=58.1
Q ss_pred CCCCCCCCeEEec--cCCC-CCccCCCCceeEEEe-------eC------------------CeeEEEecCccCHHHHHH
Q 020225 192 DLQISDEDLLFSS--PSLP-GERQSIAKPAACIQH-------IP------------------TGIAVQSLGERNHFANKM 243 (329)
Q Consensus 192 ~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H-------~p------------------tgi~v~~~~~RSq~~Nk~ 243 (329)
.-.|+.+.|.+.+ |||| ||||||++|.|-+++ || ..|++.++.+||||.|.+
T Consensus 34 ~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Nia 113 (172)
T KOG3429|consen 34 KGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNIA 113 (172)
T ss_pred CCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccHH
Confidence 4457778888888 9999 799999999999996 22 239999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020225 244 KALNRLKAKLLVIVG 258 (329)
Q Consensus 244 ~A~~~L~~~l~~~~~ 258 (329)
+||++|++.|++...
T Consensus 114 DcleKlr~~I~~~~~ 128 (172)
T KOG3429|consen 114 DCLEKLRDIIRAAEQ 128 (172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998654
No 18
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=58.84 E-value=27 Score=25.85 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEecc
Q 020225 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFE 148 (329)
Q Consensus 111 ~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~ 148 (329)
+........++||+++-+...+.+..|+..+++.++|+
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 34455667899999999999998888999999999993
No 19
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=53.74 E-value=75 Score=31.81 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhhcccCHHHHHHHHHHHHHHHHHHhHH
Q 020225 13 KSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ---LAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (329)
Q Consensus 13 ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~e---l~~~~~~D~e~~~~a~~e~~~l~~~~~~l 75 (329)
+..+-..++..+......|+++...++++++|+. ..++.+.-.+-.+.++..+..|++.+.-|
T Consensus 37 ~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 37 KLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444467788888888888888888888888776 33322222234667777788888887765
No 20
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=51.77 E-value=1.6e+02 Score=25.40 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------CHHHHHHHHHHHHHHH
Q 020225 7 LWDDPTKSNEVLVKLA---DSLKVVNALKDLRYKAEEAKLIAQLAEMEAI--------------DYGLFKRAYRASLDVS 69 (329)
Q Consensus 7 ~w~D~~ka~~~~ke~~---~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~--------------D~e~~~~a~~e~~~l~ 69 (329)
.|.|+.+..+-++-.+ .|+.-+..-+.....++|+..=++|+.++.. -+.+..++++.-+.+.
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~ 94 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLE 94 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHH
Confidence 4777776665555444 4444444444445555566555666644311 1234555665556666
Q ss_pred HHHhHHH
Q 020225 70 KLLDQYE 76 (329)
Q Consensus 70 ~~~~~le 76 (329)
+.++.|+
T Consensus 95 k~i~~le 101 (131)
T KOG1760|consen 95 KEIEELE 101 (131)
T ss_pred HHHHHHH
Confidence 6666554
No 21
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=50.29 E-value=50 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccc
Q 020225 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY 149 (329)
Q Consensus 111 ~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ 149 (329)
+......+.++||+++-+...+.+..|+...++.+.|+.
T Consensus 16 L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 16 LLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 444566678899999999999888889999999988753
No 22
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=50.03 E-value=19 Score=36.15 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHH-HHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHH------
Q 020225 7 LWDDPTKSNEVLVKLADSLKVVNA---LKDLRYKAEEA-KLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE------ 76 (329)
Q Consensus 7 ~w~D~~ka~~~~ke~~~L~~~v~~---~~~l~~~~~e~-~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le------ 76 (329)
-|.+|-+....-++...+...... |+.+.-...+. ++|..+..+.-.|+.+.....+.+.++...++-|+
T Consensus 16 ~~~~pvn~~~~~~~f~~~p~~~~p~f~yr~L~~d~~~~k~~l~~l~~e~i~d~~l~~l~r~~~~e~~~~i~mL~~~Gt~~ 95 (366)
T TIGR02421 16 KWVTPTNEPFLQSRFRDNPFSYQPEFQYRPLPFDVAETKRELYSLPIDIIRDPPLGQLYREKQDEYDLVIDLLESIGTAT 95 (366)
T ss_pred cCCchhhHHHHHHHHhhCCCCCCCccccCCCCCCHHHHHHHHHhhHHhhccChhHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 377787777776666665433221 11121111111 22333322333467777777777777777666553
Q ss_pred ---H-hhcC---CCCCCC-CCceEEEecC-----CC-CchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCC-CCCeeEE
Q 020225 77 ---M-SKLL---RGPNDV-EGASVTIKAG-----SN-GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK-NGGVKSA 141 (329)
Q Consensus 77 ---~-~lll---~~~~D~-~~~~leI~aG-----~G-G~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~-~~g~k~~ 141 (329)
. ..+. +++.-. ...+++..+. .+ ...|..++..+-++...|.....+++++-+.-.+. ..|=+
T Consensus 96 F~~~S~~lYG~p~~~~~~~a~~il~~~~~~~~~~~~~~~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~~-- 173 (366)
T TIGR02421 96 FLYNSLRLYGAPSDALIGNAPFLLELDARAMEEEEQAPVSATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSGD-- 173 (366)
T ss_pred HHHHHHHHcCCCCccccccchhHHhhccccccccccCCcCHHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccCC--
Confidence 1 1122 332221 2344442111 11 35567777777777777776655666644433222 12322
Q ss_pred EEEEecc------ccccccccccccceee-cCCCCCCCCccce
Q 020225 142 TIEFEFE------YAFGYLSGETGAHCLI-NFPNGSFPHEATL 177 (329)
Q Consensus 142 ~~~i~G~------~ay~~lk~E~GvHRv~-~sp~~~~~rr~ts 177 (329)
+|.|.-. .+.+.+.+|.|||-+- . +|+.|.|
T Consensus 174 ~l~i~~~a~fs~~~l~~L~~HEigvH~~T~~-----Ng~~Qp~ 211 (366)
T TIGR02421 174 KLKLNSDAMFSERDLEALIHHEIGVHLLTTL-----NGRAQPL 211 (366)
T ss_pred eEEECCCCCcCHHHHHHHHHHhHHhhhhhcc-----ccccCch
Confidence 4555543 3668899999999776 3 5676666
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.27 E-value=1.8e+02 Score=26.31 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 020225 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80 (329)
Q Consensus 7 ~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~ll 80 (329)
+|.=|..+.. +....+..+.....+++..+.+++.-++.+.....+.+-+..+.+++..|+..+.+|+..+-
T Consensus 56 YWsFps~~~~--~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 56 YWSFPSQAKQ--KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred EEecChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655554433 33334444555555566666666655555544444556677777788888877777654443
No 24
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=46.59 E-value=47 Score=25.83 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccc
Q 020225 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAF 151 (329)
Q Consensus 111 ~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay 151 (329)
+......+.++||+++-+...+.+.+++..+++.+.++...
T Consensus 17 L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i 57 (76)
T PRK11152 17 LERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPI 57 (76)
T ss_pred HHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchH
Confidence 33455667889999999999998888999999999765443
No 25
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=39.72 E-value=83 Score=25.14 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=30.6
Q ss_pred HHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEe-ccc
Q 020225 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFE-FEY 149 (329)
Q Consensus 114 Y~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~-G~~ 149 (329)
....+.++||+++-+...+.+..|+...++.+. |+.
T Consensus 19 it~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 19 ITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred HHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 444557799999999999999999999999997 753
No 26
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=38.43 E-value=98 Score=26.77 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHHHHHHHHcCC-eEEEEeeccCCCCCeeEEEEEEe
Q 020225 101 ICPEIWAEQLLNMYVRWADKEGY-RGRVVDKCCCKNGGVKSATIEFE 146 (329)
Q Consensus 101 ~Ea~~~a~~L~~mY~~~a~~~~~-~~~~v~~~~~~~~g~k~~~~~i~ 146 (329)
.++..+...++..|..+...-|+ .+.++....++.+++.+.+..|+
T Consensus 121 ~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e 167 (173)
T PF00587_consen 121 EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIE 167 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHH
Confidence 88999999999999999999999 99999999988777666655553
No 27
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=35.05 E-value=1.1e+02 Score=30.55 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHc--CCeEEEEeeccCCC-CCeeEEEEEEec------cccccccccccccceee-cCCCC
Q 020225 100 GICPEIWAEQLLNMYVRWADKE--GYRGRVVDKCCCKN-GGVKSATIEFEF------EYAFGYLSGETGAHCLI-NFPNG 169 (329)
Q Consensus 100 G~Ea~~~a~~L~~mY~~~a~~~--~~~~~~v~~~~~~~-~g~k~~~~~i~G------~~ay~~lk~E~GvHRv~-~sp~~ 169 (329)
...|..++..+-++..+|.... .++|++-+...+.. .|-.. |.|.- ..+.+.+.+|.|||-+- .
T Consensus 108 ~~~a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~~~--l~I~~~~~fs~~~l~~L~~HEigvH~lt~~---- 181 (349)
T PF08014_consen 108 TLDAEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSGDR--LKINKNAMFSERDLEALLHHEIGVHLLTTL---- 181 (349)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccCCe--eEEcCCCCcCHHHHHHHHHHhhhhhhcccc----
Confidence 3456677888888888888776 45555554333332 23233 44443 23568999999999776 3
Q ss_pred CCCCccce
Q 020225 170 SFPHEATL 177 (329)
Q Consensus 170 ~~~rr~ts 177 (329)
+|+.|.+
T Consensus 182 -Ng~~QPl 188 (349)
T PF08014_consen 182 -NGRAQPL 188 (349)
T ss_pred -ccccCCc
Confidence 4555554
No 28
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.60 E-value=1.2e+02 Score=28.79 Aligned_cols=69 Identities=7% Similarity=-0.005 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhh-cCCCCCCCC
Q 020225 14 SNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK-LLRGPNDVE 88 (329)
Q Consensus 14 a~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~l-ll~~~~D~~ 88 (329)
++++++....++..+..+.+.+..+....+|+ .+ ..+.+.-+.+++..++..++.+...+ +++.++|..
T Consensus 50 ar~lS~~~~e~e~l~~~l~etene~~~~neL~---~e---k~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ 119 (246)
T KOG4657|consen 50 ARALSQSQVELENLKADLRETENELVKVNELK---TE---KEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDS 119 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44445444455555554444444444433333 22 22445556666777777666665433 556666654
No 29
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.74 E-value=2.9e+02 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHhh-cCCCCCCCCCceEEEec
Q 020225 58 FKRAYRASLDVSKLLDQYEMSK-LLRGPNDVEGASVTIKA 96 (329)
Q Consensus 58 ~~~a~~e~~~l~~~~~~le~~l-ll~~~~D~~~~~leI~a 96 (329)
.-.++.++..++..++.++-.+ .+.+..+-..+-|.+.+
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~~ 203 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLYE 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEEe
Confidence 3344445555665666555322 33444444455555554
No 30
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=25.55 E-value=2e+02 Score=29.86 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=32.0
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHH-HHHH----HHHHHHHHHHHcCCeEEEEeeccC
Q 020225 77 MSKLLRGPNDVEGASVTIKAGSNGICPEI-WAEQ----LLNMYVRWADKEGYRGRVVDKCCC 133 (329)
Q Consensus 77 ~~lll~~~~D~~~~~leI~aG~GG~Ea~~-~a~~----L~~mY~~~a~~~~~~~~~v~~~~~ 133 (329)
+..|+..-..-.+|+.=..||+||=+|.. ++.. +-.....|. +-.+..++....
T Consensus 384 ~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~---~~~V~pL~v~~~ 442 (454)
T TIGR01219 384 QTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWS---SHNVLALDVREA 442 (454)
T ss_pred HHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHh---hCCEEEEecccc
Confidence 33444444455678888999999888764 2222 455666673 244555555543
No 31
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=25.29 E-value=6.4e+02 Score=26.28 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=48.6
Q ss_pred HHHHHhHHHHhhcCCCCCCCCCceEEEecCCCCch---------------HHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Q 020225 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGIC---------------PEIWAEQLLNMYVRWADKEGYRGRVVDKCC 132 (329)
Q Consensus 68 l~~~~~~le~~lll~~~~D~~~~~leI~aG~GG~E---------------a~~~a~~L~~mY~~~a~~~~~~~~~v~~~~ 132 (329)
+...++-|+..--|..+. .+.-|.|++|.||.- =.+|-..+-+||.-|+...
T Consensus 221 v~rM~~~L~~~f~p~~~~--~~~sL~I~~G~~GarLtH~H~~Qy~yV~QSL~LW~~i~~~mf~LW~~ae----------- 287 (458)
T PF09418_consen 221 VDRMIEYLKQYFDPDDAE--EGYSLAIRYGRGGARLTHSHERQYHYVLQSLTLWREIMRDMFRLWYLAE----------- 287 (458)
T ss_pred HHHHHHHHHHhcCCCCCC--CCCCeeeecCCCCCCCCCchHhhHHHHHHHHHHHHHHHHHHHHHHHHhH-----------
Confidence 334444444444343332 336799999999963 3578888999999998521
Q ss_pred CCCCCeeEEEEEEeccccccccccccccceeecCC
Q 020225 133 CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167 (329)
Q Consensus 133 ~~~~g~k~~~~~i~G~~ay~~lk~E~GvHRv~~sp 167 (329)
.+. ++|.+-|.+...=.|.||||..|
T Consensus 288 ~Dl---------l~~~~~Y~l~~TGQGl~Rvq~~p 313 (458)
T PF09418_consen 288 DDL---------LDGSNPYRLRNTGQGLNRVQQCP 313 (458)
T ss_pred HHh---------cCCCCceEeeeCCCcHHhhccCC
Confidence 121 23444466666668999999333
No 32
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=24.98 E-value=2.8e+02 Score=21.89 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHh
Q 020225 30 ALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS 78 (329)
Q Consensus 30 ~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~ 78 (329)
.+++|+.+++|++.|++.+.- +.....+..++..++..+..++..
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~R----~rVk~~L~~ei~klE~eI~~~~~~ 48 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAKR----KRVKDLLTNEIRKLETEIKKLKEA 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888887643 346777888888888888777653
No 33
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=24.68 E-value=1.5e+02 Score=24.31 Aligned_cols=35 Identities=3% Similarity=-0.084 Sum_probs=29.1
Q ss_pred HHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccc
Q 020225 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY 149 (329)
Q Consensus 115 ~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ 149 (329)
...+.++||+++-+...+.+..|+...++.+.++.
T Consensus 26 aglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~ 60 (96)
T PRK08178 26 CGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQ 60 (96)
T ss_pred HHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCch
Confidence 34446799999999999988899999999887654
No 34
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.53 E-value=6.7e+02 Score=27.66 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.0
Q ss_pred CCchHHHHHHHHHH
Q 020225 99 NGICPEIWAEQLLN 112 (329)
Q Consensus 99 GG~Ea~~~a~~L~~ 112 (329)
-|+|||.||+.-++
T Consensus 306 ~~ieact~aA~al~ 319 (867)
T KOG2148|consen 306 QGIEACTWAAKALR 319 (867)
T ss_pred hhHHHHHHHHHHHH
Confidence 58999999887544
No 35
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.34 E-value=5.6e+02 Score=24.07 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=22.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCHHHHHHHHHHHHHHHHHHhH
Q 020225 20 KLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRASLDVSKLLDQ 74 (329)
Q Consensus 20 e~~~L~~~v~~~~~l~~~~~e~~~l~el~-~~~~~D~e~~~~a~~e~~~l~~~~~~ 74 (329)
-.+.|...+..++.-...++|.....+.+ .|...=.+.+..+.+++..|+..+.+
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455554322222 22111112333444555555555444
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.17 E-value=4.3e+02 Score=30.12 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHH----HHHHHHHHHHHHhHHHHhh-cCCCCCCC
Q 020225 24 SLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR----AYRASLDVSKLLDQYEMSK-LLRGPNDV 87 (329)
Q Consensus 24 L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~----a~~e~~~l~~~~~~le~~l-ll~~~~D~ 87 (329)
++...+.=+++...+.|+.+..+|+. -|+||.++ +..+++.+.+.+++|+.-+ +|+.+...
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaT---ldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMAT---LDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455566666666666664 35666543 4556677788888887543 45444433
No 37
>PRK11020 hypothetical protein; Provisional
Probab=24.14 E-value=3.7e+02 Score=22.78 Aligned_cols=23 Identities=4% Similarity=0.013 Sum_probs=19.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHhHH
Q 020225 53 IDYGLFKRAYRASLDVSKLLDQY 75 (329)
Q Consensus 53 ~D~e~~~~a~~e~~~l~~~~~~l 75 (329)
.|.++......|+..|...+..+
T Consensus 28 gd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 28 GDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998888765
No 38
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=24.12 E-value=5.1e+02 Score=22.99 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=27.4
Q ss_pred eEEEecCCCCc--hHHHHHHHHHHHHHHHHHHcCCeEEEE
Q 020225 91 SVTIKAGSNGI--CPEIWAEQLLNMYVRWADKEGYRGRVV 128 (329)
Q Consensus 91 ~leI~aG~GG~--Ea~~~a~~L~~mY~~~a~~~~~~~~~v 128 (329)
-+.-+.|..|. +|-.|..++.+||...+..+..-+..+
T Consensus 114 ~~~~r~~~~PSlAdmLewl~di~r~y~~~yl~k~~lL~~l 153 (168)
T PF15011_consen 114 ALQQRSGVCPSLADMLEWLQDIERMYRSEYLLKKSLLSSL 153 (168)
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456667775 488899999999999887665544444
No 39
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.87 E-value=5.7e+02 Score=25.06 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CHHH-HHHHHHHHHHHHHHHhHHHHhhcCCCC
Q 020225 21 LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-------DYGL-FKRAYRASLDVSKLLDQYEMSKLLRGP 84 (329)
Q Consensus 21 ~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~-------D~e~-~~~a~~e~~~l~~~~~~le~~lll~~~ 84 (329)
.+.|++-.+.+++-...++|++.=+.-..++=. +..| +++|..|+++|++.++.+.-.+.-+|+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 346777777887777777777643321111101 1222 677888888888888887777766644
No 40
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.77 E-value=2.1e+02 Score=26.79 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=16.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 020225 3 RNYNLWDDPTKSNEVLVKLAD 23 (329)
Q Consensus 3 ~dp~~w~D~~ka~~~~ke~~~ 23 (329)
-||-+|-||.++..+.+.+++
T Consensus 93 ~dPH~Wldp~n~~~~a~~I~~ 113 (264)
T cd01020 93 DNPHLWYDPETMSKVANALAD 113 (264)
T ss_pred CCCceecCHhHHHHHHHHHHH
Confidence 389999999999887666554
No 41
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.81 E-value=1.8e+02 Score=26.09 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 020225 3 RNYNLWDDPTKSNEVLVKLAD 23 (329)
Q Consensus 3 ~dp~~w~D~~ka~~~~ke~~~ 23 (329)
.||-+|-||.++..+.+.+++
T Consensus 106 ~dPH~Wldp~~~~~~a~~I~~ 126 (203)
T cd01145 106 GNPHVWLDPNNAPALAKALAD 126 (203)
T ss_pred CCcCeecCHHHHHHHHHHHHH
Confidence 389999999999887665443
No 42
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=21.51 E-value=2.4e+02 Score=26.45 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020225 26 KVVNALKDLRYKAEEAKLIAQ 46 (329)
Q Consensus 26 ~~v~~~~~l~~~~~e~~~l~e 46 (329)
.+++.++++...+++++++++
T Consensus 236 ~i~~~l~~~~~~l~~~~~~l~ 256 (279)
T PRK07417 236 ALLRSLASYRQSLDQLEELIE 256 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666553
Done!