Query 020225
Match_columns 329
No_of_seqs 204 out of 1585
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 4E-104 1E-108 768.4 32.1 319 2-323 41-364 (365)
2 1zbt_A RF-1, peptide chain rel 100.0 6E-103 2E-107 759.6 27.8 323 1-326 32-364 (371)
3 3d5a_X RF1, peptide chain rele 100.0 4E-102 1E-106 751.2 32.6 319 1-326 18-346 (354)
4 2ihr_1 Peptide chain release f 100.0 4E-102 1E-106 753.2 22.7 316 1-324 32-353 (365)
5 2b3t_B RF-1, peptide chain rel 100.0 6E-102 2E-106 751.0 16.3 318 2-326 23-351 (360)
6 1rq0_A RF-1, peptide chain rel 100.0 3.3E-96 1E-100 706.2 25.0 309 2-327 12-328 (342)
7 2rsm_A Probable peptide chain 100.0 7.4E-34 2.5E-38 233.7 8.2 97 160-260 10-111 (115)
8 1j26_A Immature colon carcinom 99.9 1E-22 3.4E-27 168.2 9.7 69 189-257 11-107 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 2.2E-22 7.5E-27 165.2 8.6 66 192-257 7-99 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.8 1.2E-20 4.1E-25 161.5 6.6 68 191-258 6-100 (140)
11 2lw1_A ABC transporter ATP-bin 74.8 4.7 0.00016 30.9 5.1 33 2-34 45-79 (89)
12 3pe9_A Fibronectin(III)-like m 49.8 27 0.00092 27.2 5.3 49 135-184 29-88 (98)
13 3err_A Fusion protein of micro 34.4 66 0.0022 32.4 6.6 62 2-75 145-206 (536)
14 3de8_A Soluble cytochrome B562 23.2 50 0.0017 25.5 2.7 12 5-16 56-67 (106)
15 3qne_A Seryl-tRNA synthetase, 20.8 1.4E+02 0.0048 29.7 6.1 46 100-145 309-354 (485)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=3.6e-104 Score=768.40 Aligned_cols=319 Identities=27% Similarity=0.446 Sum_probs=308.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~lll 81 (329)
|++|+||+||+++++++++++.|+++++.|+++++.++|++++.+|++++ .|++|++++.+++..+++.+++++..+||
T Consensus 41 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e-~D~e~~~~a~~e~~~l~~~l~~le~~~ll 119 (365)
T 1gqe_A 41 LEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA-DDEETFNEAVAELDALEEKLAQLEFRRMF 119 (365)
T ss_dssp HHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 68999999999999999999999999999999999999999999999764 69999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccccc
Q 020225 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (329)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~GvH 161 (329)
+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++.++|+.+|||+|++.|+|++|||+||+|+|||
T Consensus 120 ~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvH 199 (365)
T 1gqe_A 120 SGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVH 199 (365)
T ss_dssp CSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEE
T ss_pred CCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecCcc
Q 020225 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGER 236 (329)
Q Consensus 162 Rv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~~R 236 (329)
||| +|||+++|||||| |+|+|+|+++ +++++.|+++||+|+| |||| |||||||+|||||||+||||+|+||++|
T Consensus 200 RvqRvs~~es~gRrhTS~asV~V~Pe~~-~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~R 278 (365)
T 1gqe_A 200 RLVRKSPFDSGGRRHTSFSSAFVYPEVD-DDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDR 278 (365)
T ss_dssp EEEEECTTSSSCCEEEEEEEEEEEECCB-TTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSS
T ss_pred EEEEeCCCCCcCCCCcceeEEEEecCCC-cccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCC
Confidence 999 9999999999999 9999999984 4688999999999999 8999 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHHHH
Q 020225 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFI 316 (329)
Q Consensus 237 Sq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~~i 316 (329)
||++||+.||++|+++|++.+.+++.++.++.|+.+..++||++||||||+| .||||||||++++|+++||+|+||+||
T Consensus 279 SQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRtY~f~~-~rVkDhRt~~~~~~l~~vldGdld~~I 357 (365)
T 1gqe_A 279 SQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDD-SRIKDLRTGVETRNTQAVLDGSLDQFI 357 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEEEEEEGGG-TEEEETTTCCEESCHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCeEeEECCC-CeeeccccCceECCHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999999988899999999999955 559999999999999999999999999
Q ss_pred HHHHHcc
Q 020225 317 EAHINSR 323 (329)
Q Consensus 317 ~~~~~~~ 323 (329)
++++.|.
T Consensus 358 ~a~l~~~ 364 (365)
T 1gqe_A 358 EASLKAG 364 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9999874
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=6.4e-103 Score=759.60 Aligned_cols=323 Identities=22% Similarity=0.280 Sum_probs=274.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHH----
Q 020225 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE---- 76 (329)
Q Consensus 1 m~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le---- 76 (329)
+|++|+||+||+++++++++++.|+++++.|++|++.++++.++.+|+++.+.|++|++++.+++..+++.+++++
T Consensus 32 ~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~ 111 (371)
T 1zbt_A 32 LLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLR 111 (371)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999996523589999999999999999998887
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEecccccccccc
Q 020225 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (329)
Q Consensus 77 ~~lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~ 156 (329)
..+||+||+|.++|+|||+||+||+||++||+|||+||++||+++||++++++.++|+.||||+|++.|+|++|||+||+
T Consensus 112 ~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~ 191 (371)
T 1zbt_A 112 FLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKY 191 (371)
T ss_dssp TTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGG
T ss_pred HhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhh
Confidence 35566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEE
Q 020225 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (329)
Q Consensus 157 E~GvHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~ 231 (329)
|+|||||| +|||+++||+||| |+|+|+|++. ++++.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 192 EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~--ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~ 269 (371)
T 1zbt_A 192 ESGAHRVQRVPVTESQGRVHTSTATVLVMPEVE--EVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVE 269 (371)
T ss_dssp GCEEEEEEECCTTCSSCCCEEEEEEEEEEECCC--GGGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEE
T ss_pred ccCeEEEEeecCCCCCCcccccceEEEEecccc--ccccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEE
Confidence 99999999 9999999999999 9999999984 378999999999999 8999 79999999999999999999999
Q ss_pred ecCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccc-CCCCCceeeecCCCCccccccccccccCcccccCC
Q 020225 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN-IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310 (329)
Q Consensus 232 ~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G 310 (329)
||++|||++||+.||++|+++|++.+.+++.++.++.|+.+++. .||++|||||| |++||||||||++++||++||+|
T Consensus 270 ~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~ig~g~Rse~IRtYnf-~q~rVtDhRtg~~~~~l~~VldG 348 (371)
T 1zbt_A 270 MQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNF-PQNRVTDHRIGLTLQKLDSILSG 348 (371)
T ss_dssp ECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEET-TTTEEEETTTTEEESCHHHHHTT
T ss_pred ECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeeeEEC-CCCEeeecccCCeECChHHHhCC
Confidence 99999999999999999999999999999999999999988886 59999999999 66999999999999999999999
Q ss_pred CcHHHHHHHHHccccc
Q 020225 311 NIKPFIEAHINSRRSS 326 (329)
Q Consensus 311 ~ld~~i~~~~~~~~~~ 326 (329)
+||+||++++.+.+++
T Consensus 349 dLd~~I~a~l~~~~~~ 364 (371)
T 1zbt_A 349 KLDEVIDALILYDQTQ 364 (371)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 3
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=3.6e-102 Score=751.19 Aligned_cols=319 Identities=24% Similarity=0.331 Sum_probs=305.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHH----
Q 020225 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE---- 76 (329)
Q Consensus 1 m~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le---- 76 (329)
+|++|+||+||+++++++++++.|+++++.|++|.+.++++.++.+|++ |++|++++.+++..+++.+++++
T Consensus 18 ~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 18 LLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKAEREALLARKEALEKELE 93 (354)
T ss_dssp HTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999874 88999999999999999998876
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEecccccccccc
Q 020225 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (329)
Q Consensus 77 ~~lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~ 156 (329)
..+||+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++.++|+.||||+|++.|+|++|||+||+
T Consensus 94 ~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~ 173 (354)
T 3d5a_X 94 RHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKY 173 (354)
T ss_dssp HHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGG
T ss_pred HhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEE
Q 020225 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (329)
Q Consensus 157 E~GvHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~ 231 (329)
|+|||||| +|||+++||+||| |+|+|+|++. ++++.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 174 E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~--~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~ 251 (354)
T 3d5a_X 174 ESGVHRVQRVPVTETQGRIHTSTATVAVLPKAE--EEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVT 251 (354)
T ss_dssp GCSEEEEEECCSSCSSCCCEEEEEEEEEEECCC--CCCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEE
T ss_pred ccCeeEEEecCCcCCCCcCccCceEEEEeccCc--ccccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEE
Confidence 99999999 9999999999999 9999999984 478999999999999 8999 69999999999999999999999
Q ss_pred ecCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccc-CCCCCceeeecCCCCccccccccccccCcccccCC
Q 020225 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN-IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310 (329)
Q Consensus 232 ~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G 310 (329)
||++|||++||+.||++|+++|++.+.+++.++.++.|+.+++. .||++|||||| |++||||||||++++||++||+|
T Consensus 252 ~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf-~q~rVtDhR~~~~~~~l~~vldG 330 (354)
T 3d5a_X 252 CQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNF-PQSRVTDHRIGFTTHDLEGVLSG 330 (354)
T ss_dssp ECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEET-TTTEEEETTTTEEECCHHHHTTT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEEC-CCCeeeecccCceeCChHHhhCC
Confidence 99999999999999999999999999999999999999998887 59999999999 56999999999999999999999
Q ss_pred CcHHHHHHHHHccccc
Q 020225 311 NIKPFIEAHINSRRSS 326 (329)
Q Consensus 311 ~ld~~i~~~~~~~~~~ 326 (329)
+||+||++++.+.+++
T Consensus 331 ~Ld~~I~a~l~~~~~~ 346 (354)
T 3d5a_X 331 HLTPILEALKRADQER 346 (354)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999999999876653
No 4
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=4.3e-102 Score=753.20 Aligned_cols=316 Identities=28% Similarity=0.405 Sum_probs=303.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCHHHHHHHHHHHHHHHHHHhHHHHhh
Q 020225 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ-LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK 79 (329)
Q Consensus 1 m~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~e-l~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~l 79 (329)
+|++|+||+||+++++++++++.|+++++.|++|++.++|++++.+ |++++ | +++.+++..+++.++++++.+
T Consensus 32 ~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ee--d----~~a~~e~~~l~~~~~~le~~~ 105 (365)
T 2ihr_1 32 RLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE--R----EALKPELEEAAKKLDELYHQT 105 (365)
T ss_dssp STTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTT--G----GGTGGGTHHHHHHHHHHHHHH
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--H----HHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999 88642 3 778888999999999999999
Q ss_pred cCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccc
Q 020225 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETG 159 (329)
Q Consensus 80 ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~G 159 (329)
||+||+|.++|+|||+||+||+||++||+|||+||.+||+++||++++++..+|+.+|||+|++.|+|++|||+||+|+|
T Consensus 106 ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~G 185 (365)
T 2ihr_1 106 LLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAG 185 (365)
T ss_dssp HTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCE
T ss_pred hcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEEEEEEEccCHHHhhhhCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecC
Q 020225 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (329)
Q Consensus 160 vHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~ 234 (329)
||||| +|||+++|||||| |+|+|+|+++ +++++.|+++||+|+| |||| |||||||+|||||||+||||+|+||+
T Consensus 186 vHRvqRvs~~es~gRrhTS~asV~V~P~~~-~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~ 264 (365)
T 2ihr_1 186 VHRLVRPSPFDASGRRHTSFAGVEVIPEVD-EEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQT 264 (365)
T ss_dssp EEEEEEECTTSSSCCEEEEEEEEEEEEECC-SSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECS
T ss_pred EEEEEEeCCCCccCCccceeEEEEEecCCC-cccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECC
Confidence 99999 9999999999999 9999999984 3578999999999999 8999 79999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccccCCCCCceeeecCCCCccccccccccccCcccccCCCcHH
Q 020225 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKP 314 (329)
Q Consensus 235 ~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld~ 314 (329)
+|||++||+.||++|+++|++.+.+++.++.++.|+.+..++||++|||||||| +||||||||++++||++||+|+||+
T Consensus 265 ~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRtYnf~~-~rVtDhRtg~~~~~l~~VldGdld~ 343 (365)
T 2ihr_1 265 TRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRSYVLDK-NYVKDHRTGLMRHDPENVLDGDLMD 343 (365)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCSCCCSCSEEEEGGG-TEEEETTTCCEESCHHHHTTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCeeeEECCC-ccchhcccCceeCChHHHhCCcHHH
Confidence 999999999999999999999999999999999998888889999999999955 9999999999999999999999999
Q ss_pred HHHHHHHccc
Q 020225 315 FIEAHINSRR 324 (329)
Q Consensus 315 ~i~~~~~~~~ 324 (329)
||++++.+..
T Consensus 344 ~I~a~l~~~~ 353 (365)
T 2ihr_1 344 LIWAGLEWKA 353 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 5
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=6.1e-102 Score=750.97 Aligned_cols=318 Identities=22% Similarity=0.294 Sum_probs=262.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHHHh---
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS--- 78 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le~~--- 78 (329)
|++|+||+||+++++++++++.|+++++.|++|...++++.++.+|+ + |++|++++.+++..+++.+++++..
T Consensus 23 ~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e---D~e~~~~a~~e~~~l~~~~~~le~~l~~ 98 (360)
T 2b3t_B 23 LGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D---DPEMREMAQDELREAKEKSEQLEQQLQV 98 (360)
T ss_dssp HHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------------------CCCC
T ss_pred hcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999999999999998 3 8899999999999999999998874
Q ss_pred -hcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccc
Q 020225 79 -KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (329)
Q Consensus 79 -lll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E 157 (329)
+||+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+|+.||||+|++.|+|++|||+||+|
T Consensus 99 ~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~~~~~i~G~~ayg~Lk~E 178 (360)
T 2b3t_B 99 LLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFE 178 (360)
T ss_dssp CCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSSCHHHHGGG
T ss_pred hhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEEcccHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceee-cCCCCCCCCccce-eeEEeeecCCCCCCC-CCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEE
Q 020225 158 TGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPD-LQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (329)
Q Consensus 158 ~GvHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~-~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~ 231 (329)
+|||||| +|||+++||+||| |+|+|+|++. +++ +.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 179 ~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~--~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~ 256 (360)
T 2b3t_B 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELP--DAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVE 256 (360)
T ss_dssp CEEEEEEECCTTCSSCCCEEEEEEEECCBCCC--TTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEE
T ss_pred cCeEEEEecCCCcccCcCCccceEEEEecCcc--cccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEE
Confidence 9999999 9999999999999 9999999984 366 889999999999 8999 79999999999999999999999
Q ss_pred ecCccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccc-CCCCCceeeecCCCCccccccccccccCcccccCC
Q 020225 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN-IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310 (329)
Q Consensus 232 ~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G 310 (329)
||++|||++||+.||++|+++|++.+.+++.++.++.|+.+++. .||++|||||| |++||||||||++++||++||+|
T Consensus 257 ~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf-~~~rVtDhRt~~~~~~l~~vldG 335 (360)
T 2b3t_B 257 CQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNF-PQGRVTDHRINLTLYRLDEVMEG 335 (360)
T ss_dssp EEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEET-TTTEEEEGGGTEEESCHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCeeeEEC-CCCeeeecccCcEECCHHHHhCC
Confidence 99999999999999999999999999999989999999888887 59999999999 56999999999999999999999
Q ss_pred CcHHHHHHHHHccccc
Q 020225 311 NIKPFIEAHINSRRSS 326 (329)
Q Consensus 311 ~ld~~i~~~~~~~~~~ 326 (329)
+||+||++++.+.+++
T Consensus 336 ~Ld~~I~a~l~~~~~~ 351 (360)
T 2b3t_B 336 KLDMLIEPIIQEHQAD 351 (360)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887754
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=3.3e-96 Score=706.19 Aligned_cols=309 Identities=25% Similarity=0.330 Sum_probs=274.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHHH--Hhh
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE--MSK 79 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~le--~~l 79 (329)
|++|+| ||+++++++++++.|+++++.|++|. .++|+++| ++++ .|+ .+++..+++.+++++ +..
T Consensus 12 ~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~-~~~~~~~l---~~e~-~D~------~~e~~~l~~~l~~le~~l~~ 78 (342)
T 1rq0_A 12 LARPDL--TPEQMKNYGMEYAKIEEIENITNRIK-ETQEFIEL---LREE-GEN------ELEIEKYEKELDQLYQELLF 78 (342)
T ss_dssp HHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTT---TTTT-TTC------CSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHH---HHhc-CCH------HHHHHHHHHHHHHHHHHHHH
Confidence 689999 99999999999999999999999999 66666655 4332 344 556677777777777 555
Q ss_pred cCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEEeccccccccccccc
Q 020225 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETG 159 (329)
Q Consensus 80 ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i~G~~ay~~lk~E~G 159 (329)
||. |+|.++|+|||+||+||+||++||+|||+||.+||+++||++++++..+|+.||||+|++.|+|++|||+||+|+|
T Consensus 79 lL~-p~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~G 157 (342)
T 1rq0_A 79 LLS-PEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESG 157 (342)
T ss_dssp HHS-CSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCE
T ss_pred hcC-ccccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCHHHHHhhccC
Confidence 665 8889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecC
Q 020225 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (329)
Q Consensus 160 vHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~ 234 (329)
||||| +|||+++||+||| |+|+|+|++. ++++.|+++||+|++ |||| |||||||+|||||+|+||||+|+||+
T Consensus 158 vHRvqRvp~~es~gR~hTS~asV~V~Pe~~--~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~ 235 (342)
T 1rq0_A 158 VHRVQRVPVTESGGRIHTSTATVAVLPEIE--EKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQN 235 (342)
T ss_dssp EEEEEECCTTSCSCCCEEEEEEEEEEECCC--GGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEE
T ss_pred eEEEEecCCcccCCCCcccceEEEEecccc--ccccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECC
Confidence 99999 9999999999999 9999999984 378999999999999 8999 79999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccc-CCCCCceeeecCCCCccccccccccccCcccccCCCcH
Q 020225 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN-IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIK 313 (329)
Q Consensus 235 ~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~rg~~IRtY~~~~~~~V~DhR~~~~~~~~~~vl~G~ld 313 (329)
+|||++||+.||++|+++|++.+.+++.++.++.|+.+++. .||++|||||| |++||||||||++++||++||+|+||
T Consensus 236 ~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~Rse~IRtYnf-~~~rVtDhRt~~~~~~l~~vldGdLd 314 (342)
T 1rq0_A 236 ERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNF-PQNRVTDHRINYTSYRLQEILDGDLD 314 (342)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEET-TTTEEEETTTTEEESCHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeEEEEC-CCCeeeecccCceeCCHHHHhCCcHH
Confidence 99999999999999999999999999999988999888887 59999999999 56999999999999999999999999
Q ss_pred HHHHHHHHcccccC
Q 020225 314 PFIEAHINSRRSSD 327 (329)
Q Consensus 314 ~~i~~~~~~~~~~~ 327 (329)
+||++++.+.+++.
T Consensus 315 ~~I~a~l~~~~~~~ 328 (342)
T 1rq0_A 315 EIISKLIEHDIENN 328 (342)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=7.4e-34 Score=233.66 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=90.2
Q ss_pred cceee-cCCCCCCCCccce-eeEEeeecCCCCCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEEeeCCeeEEEecC
Q 020225 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (329)
Q Consensus 160 vHRv~-~sp~~~~~rr~ts-~~V~V~P~~~~~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H~ptgi~v~~~~ 234 (329)
-|||| +|+++++| || ++|.|+|+.+ +...+.|+++||+|++ +||| |||||||+|||||+|+||||+|+||+
T Consensus 10 g~rvqrvp~tes~g---ts~~~v~v~p~~d-~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~ 85 (115)
T 2rsm_A 10 GLRLQEKPALLFPG---MAASTVQVAGRKD-YPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQ 85 (115)
T ss_dssp CCCCCCCCCCCCCC---CCCCCCCCCSCCC-CCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECC
T ss_pred ceeEEecCcccCCc---cceEEEEeccccC-CCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcC
Confidence 38999 99999999 89 9999999973 4567999999999999 8999 79999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHh
Q 020225 235 ERNHFANKMKALNRLKAKLLVIVGEQ 260 (329)
Q Consensus 235 ~RSq~~Nk~~A~~~L~~~l~~~~~~~ 260 (329)
+|||++||+.||++|++||++....+
T Consensus 86 ~RSQ~~Nr~~A~~~L~~kL~e~~~~~ 111 (115)
T 2rsm_A 86 TRSVDQNRKIARKVLQEKVDVFYNSG 111 (115)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999886543
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.88 E-value=1e-22 Score=168.23 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCeEEec--cCCC-CCccCCCCceeEEE-eeCCe------------------------eEEEecCccCHHH
Q 020225 189 TSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQ-HIPTG------------------------IAVQSLGERNHFA 240 (329)
Q Consensus 189 ~~~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~-H~ptg------------------------i~v~~~~~RSq~~ 240 (329)
+.+++.|+++||+|++ |||| |||||||+|||+|+ |+||| |+|+||++|||++
T Consensus 11 ~~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 90 (112)
T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred cceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHH
Confidence 3568889999999999 9999 79999999999998 99998 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020225 241 NKMKALNRLKAKLLVIV 257 (329)
Q Consensus 241 Nk~~A~~~L~~~l~~~~ 257 (329)
||+.||++|+++|++..
T Consensus 91 Nr~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 91 NLAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998763
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.87 E-value=2.2e-22 Score=165.20 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=62.5
Q ss_pred CCCCCCCCeEEec--cCCC-CCccCCCCceeEEEe------eC-----------------Ce-eEEEecCccCHHHHHHH
Q 020225 192 DLQISDEDLLFSS--PSLP-GERQSIAKPAACIQH------IP-----------------TG-IAVQSLGERNHFANKMK 244 (329)
Q Consensus 192 ~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~H------~p-----------------tg-i~v~~~~~RSq~~Nk~~ 244 (329)
.+.|+++||+|+| |||| |||||||+|||||+| +| || |+|+||++|||++||+.
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 6789999999999 9999 799999999999999 99 98 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020225 245 ALNRLKAKLLVIV 257 (329)
Q Consensus 245 A~~~L~~~l~~~~ 257 (329)
|+++|+++|++..
T Consensus 87 Al~rL~~~l~~a~ 99 (108)
T 2jva_A 87 ALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998764
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.81 E-value=1.2e-20 Score=161.52 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=63.2
Q ss_pred CCCCCCCCCeEEec--cCCC-CCccCCCCceeEEE------eeCC------------------eeEEEecCccCHHHHHH
Q 020225 191 PDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQ------HIPT------------------GIAVQSLGERNHFANKM 243 (329)
Q Consensus 191 ~~~~i~~~dl~i~~--~sG~-GQ~VNkt~saVrl~------H~pt------------------gi~v~~~~~RSq~~Nk~ 243 (329)
.++.|+++||+|+| |||| |||||||+|||+|+ |+|+ ||+|+||++|||++||+
T Consensus 6 ~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~ 85 (140)
T 4dh9_Y 6 RHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNRE 85 (140)
T ss_dssp SSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHH
T ss_pred CCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHH
Confidence 36789999999999 9999 79999999999999 6998 59999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020225 244 KALNRLKAKLLVIVG 258 (329)
Q Consensus 244 ~A~~~L~~~l~~~~~ 258 (329)
.|+++|.++|++...
T Consensus 86 ~A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 86 AALARLVAMIKELTT 100 (140)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998754
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=74.82 E-value=4.7 Score=30.91 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCcCC-CCHHHHHHHHHHHHhHHHHHHH-HHHH
Q 020225 2 VRNYNLW-DDPTKSNEVLVKLADSLKVVNA-LKDL 34 (329)
Q Consensus 2 ~~dp~~w-~D~~ka~~~~ke~~~L~~~v~~-~~~l 34 (329)
|+||+|+ .|+.+.+.++.++..++..++. |..|
T Consensus 45 ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 45 VADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789988 6888898888888887766654 3444
No 12
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=49.80 E-value=27 Score=27.16 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred CCCeeEEEEEEecc---------ccccccccccccceeecCCCCCCCCccce--eeEEeee
Q 020225 135 NGGVKSATIEFEFE---------YAFGYLSGETGAHCLINFPNGSFPHEATL--ACVDVVP 184 (329)
Q Consensus 135 ~~g~k~~~~~i~G~---------~ay~~lk~E~GvHRv~~sp~~~~~rr~ts--~~V~V~P 184 (329)
.|++.+|.|.++|. +.|.+--. .|.|.+..-.++..|...+| ++|.|-+
T Consensus 29 dg~V~kVef~vdg~~vg~dt~apy~~~w~~~-~G~htl~a~AtD~~G~~~tS~~v~vtV~~ 88 (98)
T 3pe9_A 29 DGKISRVDFLVDGEVIGSDREAPYEYEWKAV-EGNHEISVIAYDDDDAASTPDSVKIFVKQ 88 (98)
T ss_dssp SSCEEEEEEEETTEEEEEECSSSEEEEEECC-SEEEEEEEEEEETTCCBCCCEEEEEEEEC
T ss_pred CCCEEEEEEEECCEEecccccCCEEEEEEcC-CccEEEEEEEEECCCCEEeeeEEEEEECc
Confidence 34599999999984 44555444 89999996678999999988 5666643
No 13
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=34.42 E-value=66 Score=32.42 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=43.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHhHH
Q 020225 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (329)
Q Consensus 2 ~~dp~~w~D~~ka~~~~ke~~~L~~~v~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~~~~l 75 (329)
+++|+| +|+++.+.|+....|-.+|.+...+...+.+++.+.+- .+.+++++..+++.++++
T Consensus 145 ~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~e----------Lk~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 145 MSNPSY--NYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNE----------LQKLEDDAKDNQQKLEAL 206 (536)
T ss_dssp TTSTTC--SHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC--CHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHH----------HHHHHHHHHHHHHHHHHH
Confidence 567776 78889999999999999999887777766666665542 334444555555555543
No 14
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=23.20 E-value=50 Score=25.52 Aligned_cols=12 Identities=8% Similarity=-0.152 Sum_probs=6.4
Q ss_pred CcCCCCHHHHHH
Q 020225 5 YNLWDDPTKSNE 16 (329)
Q Consensus 5 p~~w~D~~ka~~ 16 (329)
|.+|.+++.+.+
T Consensus 56 p~iw~~~~~F~~ 67 (106)
T 3de8_A 56 PEMHDFRHGFDI 67 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 445555555554
No 15
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.84 E-value=1.4e+02 Score=29.71 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCeeEEEEEE
Q 020225 100 GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEF 145 (329)
Q Consensus 100 G~Ea~~~a~~L~~mY~~~a~~~~~~~~~v~~~~~~~~g~k~~~~~i 145 (329)
+.++..+...++.+|..+.+.-|+.+.++..+.|+.|+.-+-++.|
T Consensus 309 pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDi 354 (485)
T 3qne_A 309 PEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDL 354 (485)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheee
Confidence 4678888999999999999999999999999998876543333333
Done!