RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020225
(329 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 154 bits (391), Expect = 9e-45
Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 6/319 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ + + + VV+ L ++ E+ + +LA + F A
Sbjct: 42 DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEE-TFNEAVAEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G++
Sbjct: 101 DALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FPNGSFPHEATLACVDVVP 184
++++ + G+KS TI+ +YA+G+L ETG H L+ P S T V
Sbjct: 161 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVY 220
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ D++I+ DL ++ + G+ + + A I HIPTGI Q +R+ N
Sbjct: 221 PEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 280
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K +A+ ++KAKL + ++ + ++ W + R YV + ++D++TG++
Sbjct: 281 KDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVET 339
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ +VLDG++ FIEA +
Sbjct: 340 RNTQAVLDGSLDQFIEASL 358
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 140 bits (353), Expect = 1e-39
Identities = 65/324 (20%), Positives = 125/324 (38%), Gaps = 4/324 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
D + + + A V D + E+ + + + + A
Sbjct: 17 QTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAK 76
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+L Q ++ L + P+D A + ++AG+ G ++A L MY R+A+ +R
Sbjct: 77 EKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRV 136
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPL 185
++ ++GG K + + +G L E+G H + P + V +
Sbjct: 137 EIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVM 196
Query: 186 FLETSPDLQISDEDLL----FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+L + L F S G+ + A I H+PTGI V+ ER+ N
Sbjct: 197 PELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKN 256
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL+ L A++ + + +R + + + + R + P V D + + L
Sbjct: 257 KAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTL 316
Query: 302 PDFNSVLDGNIKPFIEAHINSRRS 325
+ V++G + IE I ++
Sbjct: 317 YRLDEVMEGKLDMLIEPIIQEHQA 340
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 126 bits (318), Expect = 1e-34
Identities = 72/322 (22%), Positives = 128/322 (39%), Gaps = 9/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
L P + E + + ++++ + +E + +L E + ++
Sbjct: 10 KLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYE--- 66
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+L Y+ L P + A V I+ G+ G ++A L MY R+A+++G+
Sbjct: 67 ---KELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPL 185
V + GG++ + + A+G L E+G H + P + V L
Sbjct: 124 EVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVL 183
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANK 242
D++I EDL F + G+ + + A I H+PTGI V ER+ + NK
Sbjct: 184 PEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNK 243
Query: 243 MKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLP 302
AL L+A+L + EQ +S ++ I + E R + P V D +
Sbjct: 244 QTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSY 303
Query: 303 DFNSVLDGNIKPFIEAHINSRR 324
+LDG++ I I
Sbjct: 304 RLQEILDGDLDEIISKLIEHDI 325
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 34.2 bits (78), Expect = 0.005
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 199 DLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKL 253
L + RQ IA + + + S R F N + L +++ +
Sbjct: 49 HLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMI 103
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 26.1 bits (57), Expect = 8.7
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 174 EATLACVDVVPLFLETSPDLQISDEDLLFSSPS----------LPGERQSIAKPAACIQH 223
T +D + + + DLQ E+ +S P L + +
Sbjct: 812 VFTEGRIDAIKVNMRAKFDLQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDYRPPLLT 871
Query: 224 IPTGIAVQSLGERNHFANKMKA 245
+P I + +LGE N +M++
Sbjct: 872 VPITIGLNNLGETNSNTLRMRS 893
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,215,836
Number of extensions: 56228
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 7
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)