Query 020228
Match_columns 329
No_of_seqs 170 out of 1627
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1444 Nucleotide-sugar trans 100.0 1.3E-35 2.7E-40 262.2 24.3 270 42-325 11-281 (314)
2 PTZ00343 triose or hexose phos 100.0 1.3E-33 2.8E-38 263.5 30.8 268 42-322 48-327 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 3.9E-35 8.5E-40 264.7 15.7 266 43-322 17-286 (316)
4 TIGR00817 tpt Tpt phosphate/ph 100.0 7.8E-32 1.7E-36 247.4 25.8 264 44-322 3-272 (302)
5 KOG1442 GDP-fucose transporter 100.0 4.6E-33 9.9E-38 238.8 9.3 274 43-327 28-311 (347)
6 COG5070 VRG4 Nucleotide-sugar 100.0 1.6E-29 3.4E-34 211.1 14.1 262 43-322 6-275 (309)
7 PF08449 UAA: UAA transporter 100.0 1.5E-27 3.3E-32 218.9 25.5 249 58-322 15-276 (303)
8 KOG1443 Predicted integral mem 100.0 3.1E-27 6.7E-32 206.2 18.3 275 43-328 16-301 (349)
9 KOG1581 UDP-galactose transpor 99.9 1.1E-21 2.5E-26 171.6 24.4 237 70-322 47-292 (327)
10 KOG1580 UDP-galactose transpor 99.9 2.5E-23 5.5E-28 175.4 10.3 237 70-322 49-292 (337)
11 KOG1582 UDP-galactose transpor 99.9 4.3E-22 9.3E-27 171.2 15.9 264 43-322 43-311 (367)
12 TIGR00950 2A78 Carboxylate/Ami 99.9 3.6E-19 7.9E-24 159.7 25.2 234 61-322 7-243 (260)
13 PLN00411 nodulin MtN21 family 99.8 2.5E-18 5.4E-23 160.4 26.7 260 44-322 14-307 (358)
14 PRK11272 putative DMT superfam 99.8 4.7E-18 1E-22 155.3 27.8 248 44-322 13-264 (292)
15 PRK11689 aromatic amino acid e 99.8 3.1E-18 6.6E-23 156.7 25.4 243 44-322 9-266 (295)
16 PRK11453 O-acetylserine/cystei 99.8 2.6E-17 5.7E-22 150.9 27.7 251 43-322 8-266 (299)
17 PRK15430 putative chlorampheni 99.8 1E-17 2.3E-22 153.3 24.5 250 45-322 14-264 (296)
18 PRK10532 threonine and homoser 99.8 1.4E-16 3E-21 145.6 28.9 239 45-322 18-260 (293)
19 TIGR00688 rarD rarD protein. T 99.8 2.2E-16 4.7E-21 141.6 24.5 247 44-318 7-255 (256)
20 PF06027 DUF914: Eukaryotic pr 99.8 1.8E-16 3.9E-21 145.4 24.1 246 60-322 30-284 (334)
21 KOG1583 UDP-N-acetylglucosamin 99.7 2.3E-17 5.1E-22 142.6 9.4 242 61-322 21-293 (330)
22 PF04142 Nuc_sug_transp: Nucle 99.7 1.2E-15 2.6E-20 135.1 19.8 205 117-326 13-236 (244)
23 TIGR03340 phn_DUF6 phosphonate 99.7 3.6E-14 7.8E-19 129.0 22.7 194 121-322 63-262 (281)
24 COG0697 RhaT Permeases of the 99.6 1.4E-12 3E-17 118.2 29.0 240 57-322 21-266 (292)
25 PF03151 TPT: Triose-phosphate 99.6 4.9E-14 1.1E-18 116.2 12.7 121 202-322 1-132 (153)
26 KOG2765 Predicted membrane pro 99.5 1.2E-13 2.5E-18 124.7 13.9 198 120-321 158-368 (416)
27 KOG4510 Permease of the drug/m 99.5 1.1E-14 2.5E-19 125.5 7.0 258 42-328 37-311 (346)
28 KOG3912 Predicted integral mem 99.5 9.5E-13 2.1E-17 114.4 17.8 270 48-321 8-312 (372)
29 TIGR00776 RhaT RhaT L-rhamnose 99.5 6E-12 1.3E-16 114.8 23.8 241 44-323 6-264 (290)
30 KOG2234 Predicted UDP-galactos 99.5 1.1E-11 2.3E-16 112.2 24.0 260 53-321 25-300 (345)
31 COG5006 rhtA Threonine/homoser 99.4 2.7E-10 5.9E-15 98.0 20.6 228 61-322 30-261 (292)
32 COG2962 RarD Predicted permeas 99.3 8.6E-10 1.9E-14 97.3 23.5 255 42-322 6-262 (293)
33 TIGR00803 nst UDP-galactose tr 99.0 2.2E-09 4.8E-14 94.1 10.0 169 145-322 2-203 (222)
34 KOG4314 Predicted carbohydrate 98.8 2.2E-08 4.8E-13 83.3 7.4 172 120-302 52-235 (290)
35 PF00892 EamA: EamA-like trans 98.8 3E-08 6.5E-13 78.1 7.9 117 59-191 7-124 (126)
36 PF13536 EmrE: Multidrug resis 98.7 2.1E-08 4.7E-13 78.3 6.0 76 121-197 34-110 (113)
37 KOG2766 Predicted membrane pro 98.6 6.6E-08 1.4E-12 83.6 4.7 235 55-314 30-272 (336)
38 COG2510 Predicted membrane pro 98.5 8E-07 1.7E-11 69.0 9.4 131 44-193 8-139 (140)
39 TIGR00950 2A78 Carboxylate/Ami 98.4 8.6E-06 1.9E-10 72.8 15.2 132 43-189 128-260 (260)
40 PF06800 Sugar_transport: Suga 98.4 5E-05 1.1E-09 67.7 18.0 193 119-324 43-248 (269)
41 COG2510 Predicted membrane pro 98.3 1.7E-05 3.7E-10 61.7 10.8 119 203-327 5-124 (140)
42 PRK15051 4-amino-4-deoxy-L-ara 98.0 1.8E-05 3.9E-10 61.5 7.0 64 129-192 45-108 (111)
43 PF03151 TPT: Triose-phosphate 98.0 0.00017 3.8E-09 58.9 13.0 141 49-192 6-152 (153)
44 PF00892 EamA: EamA-like trans 98.0 3.7E-05 7.9E-10 60.2 7.9 104 211-322 1-105 (126)
45 PRK15430 putative chlorampheni 97.9 0.00037 7.9E-09 63.8 14.1 123 195-322 2-124 (296)
46 PLN00411 nodulin MtN21 family 97.9 0.00032 6.9E-09 65.9 13.8 122 61-193 207-328 (358)
47 TIGR00688 rarD rarD protein. T 97.8 0.0005 1.1E-08 61.4 13.4 119 201-322 2-121 (256)
48 PRK11272 putative DMT superfam 97.8 0.00048 1E-08 62.9 12.9 109 74-194 177-286 (292)
49 PF05653 Mg_trans_NIPA: Magnes 97.7 0.0007 1.5E-08 62.0 12.8 195 123-324 51-267 (300)
50 PRK10532 threonine and homoser 97.6 0.0014 2.9E-08 60.0 13.8 131 44-192 149-280 (293)
51 PRK11689 aromatic amino acid e 97.6 0.0014 3E-08 60.0 13.1 75 118-192 212-286 (295)
52 PRK11453 O-acetylserine/cystei 97.6 0.0017 3.6E-08 59.6 13.5 78 117-194 210-288 (299)
53 TIGR00817 tpt Tpt phosphate/ph 97.4 0.0011 2.4E-08 60.7 10.4 145 44-193 146-293 (302)
54 PRK02971 4-amino-4-deoxy-L-ara 97.4 0.00047 1E-08 55.0 6.5 71 125-195 51-124 (129)
55 TIGR03340 phn_DUF6 phosphonate 97.4 0.0042 9.1E-08 56.3 13.3 112 203-322 3-114 (281)
56 PRK10452 multidrug efflux syst 97.2 0.0008 1.7E-08 52.7 5.8 70 124-193 33-103 (120)
57 PTZ00343 triose or hexose phos 97.2 0.0096 2.1E-07 55.9 13.7 145 44-192 195-347 (350)
58 TIGR00776 RhaT RhaT L-rhamnose 97.0 0.012 2.6E-07 53.7 12.4 128 42-192 151-287 (290)
59 PRK11431 multidrug efflux syst 97.0 0.0026 5.7E-08 48.6 6.4 68 124-191 32-100 (105)
60 PRK09541 emrE multidrug efflux 97.0 0.0022 4.9E-08 49.5 6.0 68 126-193 35-103 (110)
61 PF08449 UAA: UAA transporter 96.9 0.016 3.5E-07 53.2 12.5 142 44-193 155-297 (303)
62 COG0697 RhaT Permeases of the 96.9 0.031 6.8E-07 50.1 14.2 77 117-193 210-287 (292)
63 COG2076 EmrE Membrane transpor 96.9 0.0022 4.8E-08 48.7 5.3 70 123-192 32-102 (106)
64 PRK10650 multidrug efflux syst 96.9 0.0032 6.9E-08 48.5 6.1 68 124-191 38-106 (109)
65 COG2962 RarD Predicted permeas 96.7 0.024 5.2E-07 50.8 11.3 119 198-322 4-123 (293)
66 KOG2922 Uncharacterized conser 96.7 0.014 3E-07 52.9 9.7 195 123-323 65-280 (335)
67 PRK13499 rhamnose-proton sympo 96.6 0.36 7.7E-06 45.0 18.7 102 117-218 69-191 (345)
68 PF00893 Multi_Drug_Res: Small 96.4 0.011 2.3E-07 44.3 6.0 58 127-184 35-93 (93)
69 PF06027 DUF914: Eukaryotic pr 96.2 0.14 3E-06 47.6 13.2 71 125-195 237-307 (334)
70 PF10639 UPF0546: Uncharacteri 95.9 0.023 4.9E-07 43.9 5.6 70 121-191 42-112 (113)
71 PF06800 Sugar_transport: Suga 95.7 0.19 4.1E-06 45.1 11.6 100 74-189 164-267 (269)
72 PF13536 EmrE: Multidrug resis 94.9 0.24 5.2E-06 38.2 8.7 80 239-322 5-85 (113)
73 COG5006 rhtA Threonine/homoser 94.3 0.92 2E-05 40.0 11.5 130 43-189 148-278 (292)
74 KOG4510 Permease of the drug/m 93.9 0.12 2.7E-06 45.7 5.4 71 119-189 251-321 (346)
75 COG4975 GlcU Putative glucose 93.8 0.0065 1.4E-07 52.9 -2.6 194 118-324 56-262 (288)
76 PF04657 DUF606: Protein of un 93.1 2.3 5E-05 34.2 11.3 103 203-312 3-105 (138)
77 TIGR00803 nst UDP-galactose tr 92.4 1.5 3.3E-05 38.0 10.2 67 124-190 155-221 (222)
78 PRK13499 rhamnose-proton sympo 88.9 3.5 7.5E-05 38.5 9.5 116 200-322 6-125 (345)
79 KOG1581 UDP-galactose transpor 86.4 14 0.00031 33.7 11.4 139 42-190 171-310 (327)
80 KOG1441 Glucose-6-phosphate/ph 84.6 1.9 4.1E-05 39.8 5.2 143 42-193 162-307 (316)
81 PF04657 DUF606: Protein of un 84.5 19 0.00042 28.8 12.2 127 49-190 7-138 (138)
82 PF05297 Herpes_LMP1: Herpesvi 84.2 0.31 6.8E-06 43.4 0.0 96 145-241 47-146 (381)
83 PF04142 Nuc_sug_transp: Nucle 80.8 40 0.00086 29.9 13.9 129 42-183 113-243 (244)
84 COG5070 VRG4 Nucleotide-sugar 78.1 28 0.0006 30.5 9.6 128 49-185 161-288 (309)
85 KOG2234 Predicted UDP-galactos 78.0 48 0.001 30.9 11.8 117 205-321 19-142 (345)
86 KOG1444 Nucleotide-sugar trans 75.4 15 0.00033 33.6 7.8 63 129-191 236-298 (314)
87 PRK15051 4-amino-4-deoxy-L-ara 73.5 39 0.00084 25.9 10.8 35 288-322 54-88 (111)
88 KOG2765 Predicted membrane pro 71.7 19 0.00041 33.8 7.5 66 131-196 328-393 (416)
89 PF06379 RhaT: L-rhamnose-prot 66.2 20 0.00043 33.3 6.5 105 117-221 69-193 (344)
90 KOG4831 Unnamed protein [Funct 64.4 10 0.00022 28.8 3.5 70 121-191 53-123 (125)
91 PF05653 Mg_trans_NIPA: Magnes 62.2 32 0.0007 31.5 7.2 97 199-322 5-101 (300)
92 KOG1580 UDP-galactose transpor 61.2 7.1 0.00015 34.3 2.5 70 121-190 241-310 (337)
93 COG3238 Uncharacterized protei 58.6 1E+02 0.0022 25.2 9.9 102 200-307 4-105 (150)
94 PRK02971 4-amino-4-deoxy-L-ara 50.5 1.2E+02 0.0027 23.9 11.0 97 201-322 2-101 (129)
95 TIGR03144 cytochr_II_ccsB cyto 47.9 2E+02 0.0042 25.4 16.0 26 199-224 100-125 (243)
96 PF04342 DUF486: Protein of un 44.4 1.4E+02 0.0031 22.7 7.1 61 131-191 45-106 (108)
97 COG3238 Uncharacterized protei 39.6 2.1E+02 0.0045 23.4 10.9 132 46-191 8-144 (150)
98 KOG1442 GDP-fucose transporter 38.0 1.3E+02 0.0029 27.2 6.8 114 72-192 213-326 (347)
99 PF05817 Ribophorin_II: Oligos 36.6 3.4E+02 0.0074 27.8 10.4 24 16-39 518-542 (636)
100 KOG1582 UDP-galactose transpor 33.4 1.3E+02 0.0029 27.2 6.0 52 146-197 285-336 (367)
101 KOG2447 Oligosaccharyltransfer 32.9 3E+02 0.0066 24.8 8.1 69 26-94 178-252 (287)
102 COG4975 GlcU Putative glucose 31.0 22 0.00047 31.6 0.7 92 75-182 179-270 (288)
103 COG2076 EmrE Membrane transpor 29.5 1.9E+02 0.0042 22.0 5.6 33 290-322 49-82 (106)
104 PRK09541 emrE multidrug efflux 29.1 1.9E+02 0.0041 22.1 5.7 32 291-322 50-82 (110)
105 PF03729 DUF308: Short repeat 28.8 1.6E+02 0.0034 19.8 4.8 38 179-216 2-39 (72)
106 PF09930 DUF2162: Predicted tr 27.4 4.2E+02 0.0091 23.2 10.2 68 121-188 102-172 (224)
107 PF06379 RhaT: L-rhamnose-prot 22.1 6.6E+02 0.014 23.5 9.2 42 200-245 6-48 (344)
No 1
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=262.16 Aligned_cols=270 Identities=31% Similarity=0.504 Sum_probs=249.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHH
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
.+.+.+++.|+.+|+.+++.||++++.++||...++...|.+.+.+.++++++.|..++|+ .+++..
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~-------------l~~~~~ 77 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRP-------------LDLRTA 77 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCC-------------cChHHH
Confidence 4568899999999999999999999999888887777899999999999999999888763 467889
Q ss_pred HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF 201 (329)
Q Consensus 122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~ 201 (329)
|+++|+++++.++++++..+++|+|+|+++++|+.+|+++++.+..++|++++...+.++..+.+|......+|.+++..
T Consensus 78 kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~ 157 (314)
T KOG1444|consen 78 KKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLR 157 (314)
T ss_pred HHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh-hccCCccchhHHHHHHHHHHH
Q 020228 202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT-INFPYLLSPGFLVVLCFSCIL 280 (329)
Q Consensus 202 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~-~~~~~~~~~~~~~~l~~~~~~ 280 (329)
|+.|++.+.++.+.+.++.|+..+..+.+.+++++|+++++.+.+....+.+||++.. .+++.+.++.++..+.++|++
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~ 237 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVM 237 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999999999999999998832 244446677889999999999
Q ss_pred HHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCccc
Q 020228 281 AFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLH 325 (329)
Q Consensus 281 ~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~~ 325 (329)
|+..+++.++|.+.+||++.+++| .+....+.++.++++|..+|
T Consensus 238 gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~ 281 (314)
T KOG1444|consen 238 GFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFT 281 (314)
T ss_pred HHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceec
Confidence 999999999999999999999999 88888888888888776544
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=1.3e-33 Score=263.52 Aligned_cols=268 Identities=17% Similarity=0.139 Sum_probs=222.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHH
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
.+....++.|+++|+..++.||+++++ +|+|++++++|++++++++.++...+..+.|+. ...++++
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~ 114 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRI-----------KSLKLFL 114 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----------CCHHHHH
Confidence 467888999999999999999999985 688999999999999887776655442221100 0124578
Q ss_pred HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF 201 (329)
Q Consensus 122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~ 201 (329)
+.++|.|+++.......|.|++++++++++++|++.|+++++++++++|||++++++.+++++++|+++++.+|.++++.
T Consensus 115 ~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~ 194 (350)
T PTZ00343 115 KNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWL 194 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHH
Confidence 99999999998878888999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCchhHHHHHHHHHHHHHHHHHHHhCC--hhhhhc-----cCCccchh
Q 020228 202 GYAVVFLANITTAIYLATIARIGKSS-----GLNSFGLMWCNGVICGPLLLLWTFLRGD--LETTIN-----FPYLLSPG 269 (329)
Q Consensus 202 G~~~~l~s~~~~a~~~i~~~~~~~~~-----~~~~~~l~~~~~~~~~~~l~~~~~~~ge--~~~~~~-----~~~~~~~~ 269 (329)
|++++++|++++|+|+++.|+..+++ +.++.++..++.+.+.++++|.....++ +...++ ........
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGI 274 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHH
Confidence 99999999999999999999998754 3567777777788888888887653322 122121 01111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 270 FLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
.+..++.++++.+..|.+.|++++++||++.++.+++|+++++++|++++||.
T Consensus 275 ~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~ 327 (350)
T PTZ00343 275 IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ 327 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC
Confidence 34456778899999999999999999999999999999999999999999986
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=264.66 Aligned_cols=266 Identities=26% Similarity=0.344 Sum_probs=230.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
+.......|+.++++..+.||++++.++|++|++++..|..++.+...+.+.++..+.++- .++..++
T Consensus 17 ~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~------------~~~~~~~ 84 (316)
T KOG1441|consen 17 RIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKI------------SSKLPLR 84 (316)
T ss_pred HHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcc------------ccccchH
Confidence 4466789999999999999999999889999999999999999999999888875442210 1234578
Q ss_pred HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchhH
Q 020228 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFG 202 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~G 202 (329)
.++|+|++++++..++|.|++++|++++|++|++.|+++.++++++.+|++++..++++..++.|+.+++++|.++|+.|
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G 164 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFG 164 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHH-HHHHH-hCChhhhhccCCccchhHHHHHHHHH
Q 020228 203 YAVVFLANITTAIYLATIARIG--KSSGLNSFGLMWCNGVICGPLLL-LWTFL-RGDLETTINFPYLLSPGFLVVLCFSC 278 (329)
Q Consensus 203 ~~~~l~s~~~~a~~~i~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~-~~~~~-~ge~~~~~~~~~~~~~~~~~~l~~~~ 278 (329)
++.++++.+..++++++.|+++ ++++.|+.++++|+.+.+...++ |+... +|+.. ........+..++..++.+
T Consensus 165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s- 242 (316)
T KOG1441|consen 165 FISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILLLNS- 242 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHHHHH-
Confidence 9999999999999999999998 56789999999999999999888 76543 34322 1101111223344444444
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 279 ILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 279 ~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
++++.+|.+.|++++++||+|+++.|++|.++.++.|+++|+|+
T Consensus 243 v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~p 286 (316)
T KOG1441|consen 243 VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNP 286 (316)
T ss_pred HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCC
Confidence 99999999999999999999999999999999999999999983
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=7.8e-32 Score=247.38 Aligned_cols=264 Identities=17% Similarity=0.159 Sum_probs=216.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
..+.++.|+.+|++.+++||+++++ |++|.+++++|++++.+.+.+..+.+..+ +.+.++++++.
T Consensus 3 ~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 67 (302)
T TIGR00817 3 TGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPK-------------RLKISSALLKL 67 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCC-------------CCCCCHHHHHH
Confidence 3566899999999999999999984 68999999999999988877764433211 01245788999
Q ss_pred HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchhHH
Q 020228 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGY 203 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~G~ 203 (329)
+++.|++++.+..++|.+++|+++++++++++++|+++++++++++|||++++++.+++++++|+++...+|.+++..|+
T Consensus 68 ~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~ 147 (302)
T TIGR00817 68 LLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGF 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987777777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh---hccC-Cccch-hHHHHHHHHH
Q 020228 204 AVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT---INFP-YLLSP-GFLVVLCFSC 278 (329)
Q Consensus 204 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~---~~~~-~~~~~-~~~~~l~~~~ 278 (329)
++++++++++|+|.++.||..++.++++.+++.|+++.+.+.+.|.....++.... +... ..... ..+...+..+
T Consensus 148 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (302)
T TIGR00817 148 LSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAA 227 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHH
Confidence 99999999999999999998876578999999999999988888877655442211 1000 00111 1232233333
Q ss_pred H-HHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 279 I-LAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 279 ~-~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
. +....|...+.+++++||++.++.+++||+.++++|++++||.
T Consensus 228 ~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~ 272 (302)
T TIGR00817 228 MGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK 272 (302)
T ss_pred HHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC
Confidence 3 4455666778899999999999999999999999999999985
No 5
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-33 Score=238.83 Aligned_cols=274 Identities=24% Similarity=0.311 Sum_probs=247.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHHHHHHHHHc-----ccccccCCCCCccCCCCCcc
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSS--YNFPCANVITLLQMISSCSFLYFLRRW-----KIINFTMGDSLMTSDSSSTF 115 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~--~~f~~p~~l~~~q~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 115 (329)
+....+..|..+|+++++.||++++. ...+.|.+++++|.+++..++..+.+. +..++|. -+
T Consensus 28 ~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~-----------~~ 96 (347)
T KOG1442|consen 28 QVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPS-----------LQ 96 (347)
T ss_pred chhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCc-----------cc
Confidence 44667788999999999999999985 456889999999999998888877653 2233332 22
Q ss_pred ccHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC
Q 020228 116 VPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD 195 (329)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~ 195 (329)
++.+..++++|+++.+.+++.++|.+|+|+++++|++-|+++.+|+.++.++++|+|-+.....++.++++|..+.+..|
T Consensus 97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE 176 (347)
T KOG1442|consen 97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE 176 (347)
T ss_pred ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHH
Q 020228 196 ---LSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLV 272 (329)
Q Consensus 196 ---~~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~ 272 (329)
...++.|.++++.++++.|+..+++|+.....+..-|.+.+|++..+..+.+|...+.||.++.+++++..+..+|.
T Consensus 177 ~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~ 256 (347)
T KOG1442|consen 177 GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWI 256 (347)
T ss_pred cccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHH
Confidence 45689999999999999999999999998877778899999999999999999999999999999988877888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCccccc
Q 020228 273 VLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTY 327 (329)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~~~~ 327 (329)
.+.++|++||..++.+.+-+|.|||+|+.|.++.|.+...++++.+++|.+...|
T Consensus 257 ~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw 311 (347)
T KOG1442|consen 257 LMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW 311 (347)
T ss_pred HHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe
Confidence 9999999999999999999999999999999999999999999999999876555
No 6
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.96 E-value=1.6e-29 Score=211.07 Aligned_cols=262 Identities=21% Similarity=0.302 Sum_probs=236.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
.+..+++.|+.+|+.+++.|||+++..||+-...+.+.|.+++.+.+.+++..|..++| ..+.|
T Consensus 6 s~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR----------------~t~aK 69 (309)
T COG5070 6 SELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR----------------LTKAK 69 (309)
T ss_pred ccchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee----------------hhhhh
Confidence 34678899999999999999999999999999999999999999999999988876654 34578
Q ss_pred HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc------
Q 020228 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL------ 196 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~------ 196 (329)
+++|.+.+..++++.+..+++|.++|.|++.|+++.+.++..+..++|.+.+..+..+.+++++....++++|.
T Consensus 70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~ 149 (309)
T COG5070 70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK 149 (309)
T ss_pred hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHH
Q 020228 197 --SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVL 274 (329)
Q Consensus 197 --~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l 274 (329)
..| .|++|+..+++..|.+....|+..+-.+....+.+||+++++.|+++...+..+||++. +......+..+..+
T Consensus 150 ~~~lN-~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~am 227 (309)
T COG5070 150 AQILN-PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAM 227 (309)
T ss_pred hcccC-CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHH
Confidence 345 79999999999999999999999877777889999999999999999999999988763 11122334456788
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+++|++++...+++-+|++.+|+++++.+|.+++....+.|.++||++
T Consensus 228 ~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap 275 (309)
T COG5070 228 FISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAP 275 (309)
T ss_pred HHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCc
Confidence 999999999999999999999999999999999999999999999876
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.96 E-value=1.5e-27 Score=218.92 Aligned_cols=249 Identities=20% Similarity=0.265 Sum_probs=211.3
Q ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHH
Q 020228 58 LVMFNKAALSSYNF-PCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMV 136 (329)
Q Consensus 58 ~~~~nK~ll~~~~f-~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (329)
..+..+.+...... ++|.++++.|++++.+...+.....+.+ + + ++..++++++.++++.++..
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-~-----------~---~~~~~~~~~~~~~~~~~~~~ 79 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-K-----------S---RKIPLKKYAILSFLFFLASV 79 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-C-----------C---CcChHHHHHHHHHHHHHHHH
Confidence 34455666654333 4899999999999998888776643311 0 1 12236788999999999999
Q ss_pred HhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcc----c------chhHHHHH
Q 020228 137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS----F------DFFGYAVV 206 (329)
Q Consensus 137 ~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~----~------~~~G~~~~ 206 (329)
++|.|++|+|+|+++++|++.|+++++++++++|||++++++.+++++++|++++..+|.+ . +..|+++.
T Consensus 80 ~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll 159 (303)
T PF08449_consen 80 LSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILL 159 (303)
T ss_pred HHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998765531 1 12399999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH--hCChhhhhccCCccchhHHHHHHHHHHHHHHH
Q 020228 207 FLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFL--RGDLETTINFPYLLSPGFLVVLCFSCILAFFL 284 (329)
Q Consensus 207 l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (329)
+++.+++|++.+++|++.++++.+++++++|++.++.++..+.... +||+.+..++.. .+|..+..++..++++...
T Consensus 160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~~s~~~~~g 238 (303)
T PF08449_consen 160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLLFSLTGALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777 788776655443 3455678889999999999
Q ss_pred HHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 285 NYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 285 ~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+...+.+++++||++.+++.++|++.++++|+++|||.
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~ 276 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHP 276 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999864
No 8
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=3.1e-27 Score=206.22 Aligned_cols=275 Identities=20% Similarity=0.225 Sum_probs=229.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccH-HHH
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPL-KTL 121 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 121 (329)
..+..+++|+.+|+++.+++|+.-. .|++|.+++.+|+++-+++....++....+.++ . +...+| ..+
T Consensus 16 ~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r-~--------r~~~sw~~~L 84 (349)
T KOG1443|consen 16 LTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPR-A--------RVVLSWRDYL 84 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCc-c--------ccCCcHHHHH
Confidence 3455569999999999999999886 468899999999999999988887764433221 1 112445 578
Q ss_pred HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF 201 (329)
Q Consensus 122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~ 201 (329)
|+..|.|+.-+.++.++|.|++|++++.|++.|+.+++|+.+++.++.-||+++.-.+.++++.+|+++.++.+.+++..
T Consensus 85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~ 164 (349)
T KOG1443|consen 85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE 164 (349)
T ss_pred HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---CCchhHHHHHHHHHHHHHHHHHHH-hCChh----hhhccCCcc-chhHHH
Q 020228 202 GYAVVFLANITTAIYLATIARIGKSSG---LNSFGLMWCNGVICGPLLLLWTFL-RGDLE----TTINFPYLL-SPGFLV 272 (329)
Q Consensus 202 G~~~~l~s~~~~a~~~i~~~~~~~~~~---~~~~~l~~~~~~~~~~~l~~~~~~-~ge~~----~~~~~~~~~-~~~~~~ 272 (329)
|+++.++++++.++++.+.|.++++.+ .+|.+.+++..++....++|.... +|... +.+++.... -.....
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g 244 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG 244 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence 999999999999999999999998654 589999999999988888877644 44322 122221111 122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC-cccccc
Q 020228 273 VLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF-GLHTYC 328 (329)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~-~~~~~~ 328 (329)
.+.+.|..+|...++.|....+||.++.+++|..|.+.+.+++..+.+|. +..+||
T Consensus 245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~ 301 (349)
T KOG1443|consen 245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWL 301 (349)
T ss_pred HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHH
Confidence 56778888999999999999999999999999999999999999998654 555554
No 9
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.1e-21 Score=171.64 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=208.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhH
Q 020228 70 NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPM 149 (329)
Q Consensus 70 ~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~ 149 (329)
+|..+.++.++|-+++.++.+.+.+....+.++ ..-+.+....++...++-.++..||+|++.|+
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~---------------~apl~~y~~is~tn~~s~~~~yeaLKyvSyPt 111 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSG---------------VAPLYKYSLISFTNTLSSWCGYEALKYVSYPT 111 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcccccCCC---------------CCchhHHhHHHHHhhcchHHHHHHHHhccchH
Confidence 588899999999999999998887654322111 12256778889999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---------ccchhHHHHHHHHHHHHHHHHHHH
Q 020228 150 YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------SFDFFGYAVVFLANITTAIYLATI 220 (329)
Q Consensus 150 ~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~i~~ 220 (329)
+++.|++..+.+++...++.|+|++..++++..++..|+.++...+. ..++.|+.++..+.+++++-+..+
T Consensus 112 q~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQ 191 (327)
T KOG1581|consen 112 QTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQ 191 (327)
T ss_pred HHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHH
Confidence 99999999999999999999999999999999999999988754321 246899999999999999999999
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 020228 221 ARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQ 300 (329)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~ 300 (329)
+++.++++.++++++++.|+++.+......+..|.+.+..++.. .+|+.+..+++.+++|.+.+...|..+++.+|++.
T Consensus 192 d~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~-~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~ 270 (327)
T KOG1581|consen 192 DSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK-EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTF 270 (327)
T ss_pred HHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHH
Confidence 99999999999999999999999998888777787766655543 46788899999999999999999999999999999
Q ss_pred HHhhchhhHHHHHHHHhhhcCC
Q 020228 301 TICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 301 si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+.+.+.|+++++++|.++||+.
T Consensus 271 t~I~ttRk~~si~lS~i~f~h~ 292 (327)
T KOG1581|consen 271 TTIMTTRKMVSIMLSCIVFGHP 292 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999875
No 10
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.5e-23 Score=175.37 Aligned_cols=237 Identities=17% Similarity=0.127 Sum_probs=201.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhH
Q 020228 70 NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPM 149 (329)
Q Consensus 70 ~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~ 149 (329)
.|.+...+.+.|..+..++.-++...+... ++|...-+.....++.|.+.+..+|.|++|+|.|+
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~~~---------------~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPT 113 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIRKKT---------------EIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPT 113 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeecccc---------------cccCCcchHHHHHHHHHHHHHHhccchhcccCCcH
Confidence 488889999999999988887665432210 11221235667788999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc-------ccchhHHHHHHHHHHHHHHHHHHHHH
Q 020228 150 YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL-------SFDFFGYAVVFLANITTAIYLATIAR 222 (329)
Q Consensus 150 ~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~i~~~~ 222 (329)
..+-|++.|+.+++++.++.+|+++++++.+++.+++|++++-+.+. +....|-++.++|.-.+++....++|
T Consensus 114 qVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdr 193 (337)
T KOG1580|consen 114 QVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDR 193 (337)
T ss_pred HHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHH
Confidence 99999999999999999999999999999999999999999765432 22358889999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 020228 223 IGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTI 302 (329)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si 302 (329)
+...++.+...+++|+|+++...+-.....+||.-+...+.. ++|..|+-+.+.++++...+++.|..+...+|++.|+
T Consensus 194 ira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~-RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSi 272 (337)
T KOG1580|consen 194 IRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQ-RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSI 272 (337)
T ss_pred HHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHH-hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEE
Confidence 988888899999999999999988887778999655443332 4567788899999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHhhhcCC
Q 020228 303 CGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 303 ~~~~k~i~~~~~s~~~f~~~ 322 (329)
+.+.|+..+++.|+++|+|+
T Consensus 273 vTTTRKfFTil~SVllf~np 292 (337)
T KOG1580|consen 273 VTTTRKFFTILISVLLFNNP 292 (337)
T ss_pred EeehHHHHHHHHHHHHhcCc
Confidence 99999999999999999986
No 11
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.3e-22 Score=171.20 Aligned_cols=264 Identities=14% Similarity=0.082 Sum_probs=222.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHH
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSSYNFP-CANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~-~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
+-++.+...++..+.--.+.+++++..||+ +.+.+++.|+++-..+.++..+. ++ ++++.+||
T Consensus 43 QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~----~~---------~k~r~iP~--- 106 (367)
T KOG1582|consen 43 QFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL----IQ---------TKRRVIPW--- 106 (367)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe----ec---------ccceecch---
Confidence 345555555555666666789999999996 99999999999887666554432 11 11233564
Q ss_pred HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc----c
Q 020228 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL----S 197 (329)
Q Consensus 122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~----~ 197 (329)
|....++.+...++.++|.|+.|++.|+..+.|++..+.+++.+.++.++|+++.++.+..++++|.++++..|. +
T Consensus 107 rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPN 186 (367)
T KOG1582|consen 107 RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPN 186 (367)
T ss_pred hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCC
Confidence 678888888899999999999999999999999999999999999999999999999999999999999887664 6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHH
Q 020228 198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFS 277 (329)
Q Consensus 198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~ 277 (329)
||..|+++.-.+.+++|+-...+++..+..+.+..++++|...++.++++.....+||..+.|.+...+........++-
T Consensus 187 F~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~ 266 (367)
T KOG1582|consen 187 FNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLF 266 (367)
T ss_pred cceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHH
Confidence 88999999999999999999999999998889999999999999999999988899999988887665555445555566
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 278 CILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+..+++...+....++..+|.+.+.+.+.|+.+++++|+++|..+
T Consensus 267 s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKP 311 (367)
T KOG1582|consen 267 SLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKP 311 (367)
T ss_pred HHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCc
Confidence 666777666667789999999999999999999999999999754
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.85 E-value=3.6e-19 Score=159.67 Aligned_cols=234 Identities=16% Similarity=0.102 Sum_probs=180.9
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHH-HHHHHHHHhh
Q 020228 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAV-AYLLYMVVSV 139 (329)
Q Consensus 61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n 139 (329)
..|+.+++ . ..+..+.+.|++.+.+.+.+..+.+ + ++++++.....+. ...+...+.+
T Consensus 7 ~~k~~~~~-~-~~~~~~~~~r~~~~~l~l~~~~~~~----~---------------~~~~~~~~~~~~~~~~~l~~~~~~ 65 (260)
T TIGR00950 7 VIGQYLEG-Q-VPLYFAVFRRLIFALLLLLPLLRRR----P---------------PLKRLLRLLLLGALQIGVFYVLYF 65 (260)
T ss_pred HHHHHHhc-C-CCHHHHHHHHHHHHHHHHHHHHHhc----c---------------CHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57998875 2 4588899999999888776654432 1 1233445555654 5678888999
Q ss_pred hhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec-CcccchhHHHHHHHHHHHHHHHHH
Q 020228 140 ESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR-DLSFDFFGYAVVFLANITTAIYLA 218 (329)
Q Consensus 140 ~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~i 218 (329)
.|++|+|++...++.++.|+++++++.+++|||++++++.++.+.++|+.+...+ +.+.+..|++++++++++++.+.+
T Consensus 66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~ 145 (260)
T TIGR00950 66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTV 145 (260)
T ss_pred HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999886543 344567899999999999999999
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHH-HHHHHHHHHhccch
Q 020228 219 TIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFF-LNYSIFLNTTLNSA 297 (329)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~sa 297 (329)
..|+..++.+.++.....+....+.+.+.+.....++... .+...|..++..++++.. .....+.++++.++
T Consensus 146 ~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 218 (260)
T TIGR00950 146 LYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDP 218 (260)
T ss_pred HHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999987544344444445666777777666554443211 123446666667766644 44455789999999
Q ss_pred hHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 298 VTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 298 ~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
.+.++..+++|+.+.+++++++||.
T Consensus 219 ~~~s~~~~~~pv~~~ll~~~~~~E~ 243 (260)
T TIGR00950 219 SAASILALAEPLVALLLGLLILGET 243 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 13
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.84 E-value=2.5e-18 Score=160.44 Aligned_cols=260 Identities=12% Similarity=0.064 Sum_probs=184.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
..++.+.--.++.++..+.|+.++. |.+ |..+.++|+..+.+++.++...++.+.+ ..+.+++++..
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-----------~~~~~~~~~~~ 80 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRS-----------LPPLSVSILSK 80 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCcchHHHHHH
Confidence 3444555556666777788999964 766 6779999999998887766433211100 01124667777
Q ss_pred HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHH------hCcccCccchhhhhhhhhhheeeee-cCc
Q 020228 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFL------AGQKYTPPVVGSVGLIILGAFVAGA-RDL 196 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~------~~e~~~~~~~~sv~~~~~Gv~l~~~-~~~ 196 (329)
+...+++......+.+.+++|++++.+.++.++.|+++++++.++ +|||.+++++.++++.++|+.+... ++.
T Consensus 81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~ 160 (358)
T PLN00411 81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGP 160 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCc
Confidence 777887765566689999999999999999999999999999999 6999999999999999999987432 111
Q ss_pred -----------------------ccc-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHHHHH
Q 020228 197 -----------------------SFD-FFGYAVVFLANITTAIYLATIARIGKSSGLNS-FGLMWCNGVICGPLLLLWTF 251 (329)
Q Consensus 197 -----------------------~~~-~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~ 251 (329)
..+ ..|.++++++++++|+|++..|+..++ +++ ....+++...+.....+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l 238 (358)
T PLN00411 161 RVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGL 238 (358)
T ss_pred ccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHH
Confidence 112 459999999999999999999999874 344 34455555544443333332
Q ss_pred H-hCC-hhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 252 L-RGD-LETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 252 ~-~ge-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
. +++ .. .|. ...+... ..+++.++...+.....++++++.+|...++..+++|+.++++|++++||.
T Consensus 239 ~~~~~~~~-~~~--~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~ 307 (358)
T PLN00411 239 VVEKNNPS-VWI--IHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS 307 (358)
T ss_pred HHccCCcc-cce--eccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC
Confidence 2 221 11 111 1112222 234555555444444557899999999999999999999999999999986
No 14
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.83 E-value=4.7e-18 Score=155.30 Aligned_cols=248 Identities=10% Similarity=0.074 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
.+...++|+...+. .|+.+++ .+ |..+.++|++.+.+++.+....++.+ ..++++++.
T Consensus 13 ~~~~~~iWg~~~~~----~K~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~~~~---------------~~~~~~~~~ 70 (292)
T PRK11272 13 LFALYIIWGSTYLV----IRIGVES--WP-PLMMAGVRFLIAGILLLAFLLLRGHP---------------LPTLRQWLN 70 (292)
T ss_pred HHHHHHHHhhHHHH----HHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHHHhCCC---------------CCcHHHHHH
Confidence 35667888877664 5988873 34 88899999999988877665432211 013456677
Q ss_pred HhHHHHHH-HHHHHHhhhhc-cccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec-Ccccch
Q 020228 124 TLPLAVAY-LLYMVVSVESV-RGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR-DLSFDF 200 (329)
Q Consensus 124 ~~~~~~~~-~~~~~~~n~al-~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~-~~~~~~ 200 (329)
....|.+. .....+.+.+. ++++++...++.++.|+++++++.+ +|||++++++.++++.++|+.+...+ +.+.+.
T Consensus 71 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~ 149 (292)
T PRK11272 71 AALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNP 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccch
Confidence 77777654 45566778888 9999999999999999999999986 69999999999999999999886533 344566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHH
Q 020228 201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCIL 280 (329)
Q Consensus 201 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (329)
.|.++++++++++|.+.+..||..+ + ++.....+....+.+.+.+.....++.. . ...+...|..+++.+++
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~i~~l~i~ 221 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPL--P-VGMMAGAAEMLAAGVVLLIASLLSGERL---T--ALPTLSGFLALGYLAVF 221 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHcCCcc---c--ccCCHHHHHHHHHHHHH
Confidence 8999999999999999999999754 2 3344556666777666666554433311 1 11133456677777776
Q ss_pred HHHHHH-HHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 281 AFFLNY-SIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 281 ~~~~~~-~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+....+ ..+.++++.++...++..+++|+.+.+++++++||.
T Consensus 222 ~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~ 264 (292)
T PRK11272 222 GSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET 264 (292)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 655444 447789999999999999999999999999999986
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.83 E-value=3.1e-18 Score=156.72 Aligned_cols=243 Identities=12% Similarity=0.087 Sum_probs=173.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
.+.++++|+...+ ..|..+++ +| |..+.++|+..+.+++....+. .+.+ +++.+.
T Consensus 9 ~l~a~~~Wg~~~~----~~k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~~~--~~~~----------------~~~~~~ 63 (295)
T PRK11689 9 GLIAILLWSTMVG----LIRGVSES--LG-PVGGAAMIYSVSGLLLLLTVGF--PRLR----------------QFPKRY 63 (295)
T ss_pred HHHHHHHHHHHHH----HHHHHHcc--CC-hHHHHHHHHHHHHHHHHHHccc--cccc----------------cccHHH
Confidence 4677788887665 46998874 45 8889999999998877765321 1100 111223
Q ss_pred HhHHHHHHHHHHHHhhhhcc----ccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---
Q 020228 124 TLPLAVAYLLYMVVSVESVR----GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--- 196 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~----~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--- 196 (329)
.+.-++.+.....+.+.+++ +.+.....++.++.|+++.+++.+++|||++++++.++++.++|+.+...++.
T Consensus 64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 143 (295)
T PRK11689 64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLS 143 (295)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccch
Confidence 33334445566666666665 46777888999999999999999999999999999999999999988765432
Q ss_pred --------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccch
Q 020228 197 --------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSP 268 (329)
Q Consensus 197 --------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~ 268 (329)
+.+..|+++++++++++|.|+++.||..+ +.++....+ ..+...+.+.....++.. ...++
T Consensus 144 ~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~~~~~~------~~~~~ 212 (295)
T PRK11689 144 LAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFLSPQPA------MVFSL 212 (295)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHHhcCcc------ccCCH
Confidence 12356999999999999999999999865 345554422 222233333222233211 11223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 269 GFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
..|..+++.++.+.......++++++.+|...++..+++|+.+++++++++||.
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~ 266 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP 266 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence 445566666666666666778999999999999999999999999999999986
No 16
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.81 E-value=2.6e-17 Score=150.87 Aligned_cols=251 Identities=12% Similarity=0.099 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
..++.+++|+...+. .|..+++ ++ |..+.++|+..+.+.+....+. .+ .++ +
T Consensus 8 ~~l~~~~~Wg~~~~~----~k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~~~--~~----------------~~~---~ 59 (299)
T PRK11453 8 LALLVVVVWGLNFVV----IKVGLHN--MP-PLMLAGLRFMLVAFPAIFFVAR--PK----------------VPL---N 59 (299)
T ss_pred HHHHHHHHHhhhHHH----HHHHHhc--CC-HHHHHHHHHHHHHHHHHHHhcC--CC----------------Cch---H
Confidence 356777888877664 5988864 45 8899999999876555443311 00 112 3
Q ss_pred HHhHHHHHH-HHHHHHhhhhccc-cchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC---cc
Q 020228 123 HTLPLAVAY-LLYMVVSVESVRG-VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD---LS 197 (329)
Q Consensus 123 ~~~~~~~~~-~~~~~~~n~al~~-~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~---~~ 197 (329)
.....+++. .....+.+.+++| .|.+...++.++.|+++.+++++++|||+++++++++++.++|+.+...++ .+
T Consensus 60 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~ 139 (299)
T PRK11453 60 LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQH 139 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcc
Confidence 344445543 3344466778887 689999999999999999999999999999999999999999998865432 23
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHHHH-hCChhhhhccCCccchhHHHHHH
Q 020228 198 FDFFGYAVVFLANITTAIYLATIARIGKSSG-LNSFGLMWCNGVICGPLLLLWTFL-RGDLETTINFPYLLSPGFLVVLC 275 (329)
Q Consensus 198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~~-~ge~~~~~~~~~~~~~~~~~~l~ 275 (329)
.+..|+.+++++++++|.|.++.|+..++.+ ........+....+.......... +++....... ...++..|..++
T Consensus 140 ~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 218 (299)
T PRK11453 140 VAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL-VTIDMTTILSLM 218 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh-ccCCHHHHHHHH
Confidence 3457999999999999999999999865322 122233444444443333333222 2221100011 112445677888
Q ss_pred HHHHHHHHHHHHH-HHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 276 FSCILAFFLNYSI-FLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 276 ~~~~~~~~~~~~~-~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+.++++....+.. +..+++.+|.+.++...++|+.++++|++++||.
T Consensus 219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~ 266 (299)
T PRK11453 219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER 266 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888777766655 6789999999999999999999999999999987
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.81 E-value=1e-17 Score=153.27 Aligned_cols=250 Identities=12% Similarity=0.000 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHH
Q 020228 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
++++++|+...+ ..|.+ . +++ |..+.++|.+++.+++..+....+ +.+... ++..++++....
T Consensus 14 l~a~~~wg~~~~----~~k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~--------~~~~~~~~~~~~ 76 (296)
T PRK15430 14 LAAYFIWGIAPA----YFKLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLK--------TLIQTPQKIFML 76 (296)
T ss_pred HHHHHHHHHHHH----HHHHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHH--------HHHcCHHHHHHH
Confidence 455566665544 45875 3 345 788999999998876654432211 000000 000022333333
Q ss_pred hHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchhHHH
Q 020228 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYA 204 (329)
Q Consensus 125 ~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~G~~ 204 (329)
..-++.......+.+.+++++|++...++..+.|+++++++++++|||++++++.++++.++|+.+...++.+. ..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~ 152 (296)
T PRK15430 77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PI 152 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cH
Confidence 33345577788999999999999999999999999999999999999999999999999999998865332222 15
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccch-hHHHHHHHHHHHHHH
Q 020228 205 VVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSP-GFLVVLCFSCILAFF 283 (329)
Q Consensus 205 ~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 283 (329)
+++++++++|.|.+..|+..++...+......+..+.+.+...+. ..+....++ .++ ..+..+...++.+..
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~g~~t~i 225 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMG----QNPMSLNLLLIAAGIVTTV 225 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCccccc----CCcHHHHHHHHHHHHHHHH
Confidence 688899999999999988754322222333334444443332211 111000011 112 123444555656666
Q ss_pred HHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 284 LNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 284 ~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
..++.+.++++.+|...++..+++|+.++++|++++||.
T Consensus 226 ~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~ 264 (296)
T PRK15430 226 PLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK 264 (296)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777778999999999999999999999999999999986
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.80 E-value=1.4e-16 Score=145.64 Aligned_cols=239 Identities=16% Similarity=0.070 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHH
Q 020228 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
++++++|. +.....|+.+++ +| |..+.++|++.+.+++.+..+.++.+ .++++++..
T Consensus 18 ~la~~~~~----~~~~~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~~~~~~----------------~~~~~~~~~ 74 (293)
T PRK10532 18 LIAMASIQ----SGASLAKSLFPL--VG-APGVTALRLALGTLILIAIFKPWRLR----------------FAKEQRLPL 74 (293)
T ss_pred HHHHHHHH----hhHHHHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHhHHhcc----------------CCHHHHHHH
Confidence 44444444 334468999985 45 67799999999988877654321111 234566777
Q ss_pred hHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec--C-cccchh
Q 020228 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR--D-LSFDFF 201 (329)
Q Consensus 125 ~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~--~-~~~~~~ 201 (329)
+..|++......+.+.+++|+|++...++..+.|+++.+++ +|++.+ ...+.+.++|+.+.... + .+.+..
T Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~ 148 (293)
T PRK10532 75 LFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLT 148 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChH
Confidence 78888888888899999999999999999999999999887 355544 44566778998775432 2 234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHH
Q 020228 202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA 281 (329)
Q Consensus 202 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (329)
|.++++++++++|.|.+..|+..+ +.++.... +...++...+.+.....+. . ...++..|..++..++++
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~------~~~~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGA--EHGPATVA-IGSLIAALIFVPIGALQAG-E------ALWHWSILPLGLAVAILS 218 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHH-HHHHHHHHHHHHHHHHccC-c------ccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999976 34666654 4455555555555443321 0 112333455556777777
Q ss_pred HHHHHHH-HHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 282 FFLNYSI-FLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 282 ~~~~~~~-~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
....+.. +..+++.+|...++..+++|+.++++|++++||.
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~ 260 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET 260 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC
Confidence 6666644 7899999999999999999999999999999986
No 19
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.77 E-value=2.2e-16 Score=141.57 Aligned_cols=247 Identities=9% Similarity=-0.012 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccH-HHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPL-KTL 121 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 121 (329)
.++++++|+..++ ..|+ ..+ .+ |..+.++|++.+.+++.+.... ++.+.. .++ .++.++ +..
T Consensus 7 ~i~a~~~wg~~~~----~~k~-~~~--~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~-~~~-------~~~~~~~~~~ 70 (256)
T TIGR00688 7 SLLASFLFGYMYY----YSKL-LKP--LP-ATDILGHRMIWSFPFMLLSVTLFRQWAAL-IER-------LKRIQKRPLI 70 (256)
T ss_pred HHHHHHHHHHHHH----HHHH-hcc--CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHH-------HhCcccchHH
Confidence 4566677776655 4698 443 44 8899999999988776554322 211100 000 000111 223
Q ss_pred HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF 201 (329)
Q Consensus 122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~ 201 (329)
......+++......+.+.|+++++++.++++.++.|+++++++.+++|||+++++++++++.++|+.+...++.+.+
T Consensus 71 ~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~-- 148 (256)
T TIGR00688 71 LSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP-- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch--
Confidence 334556677888899999999999999999999999999999999999999999999999999999987644322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHH
Q 020228 202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA 281 (329)
Q Consensus 202 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (329)
.+++++++++|.|.+..|+..++ +..+.... .....+...+... .+++... ........|..++..|+++
T Consensus 149 --~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~l~~~g~~t 218 (256)
T TIGR00688 149 --WEALVLAFSFTAYGLIRKALKNT---DLAGFCLE-TLSLMPVAIYYLL-QTDFATV---QQTNPFPIWLLLVLAGLIT 218 (256)
T ss_pred --HHHHHHHHHHHHHHHHHhhcCCC---CcchHHHH-HHHHHHHHHHHHH-HhccCcc---cccCchhHHHHHHHHHHHH
Confidence 46789999999999999887542 22222221 2222222222211 1111110 1111112466667777777
Q ss_pred HHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhh
Q 020228 282 FFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAI 318 (329)
Q Consensus 282 ~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~ 318 (329)
.....+.+.++|+.+|...++..+++|+.++++++++
T Consensus 219 ~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 219 GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777899999999999999999999999999764
No 20
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.77 E-value=1.8e-16 Score=145.38 Aligned_cols=246 Identities=11% Similarity=0.044 Sum_probs=176.7
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhh
Q 020228 60 MFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSV 139 (329)
Q Consensus 60 ~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 139 (329)
..+.++-+. |++.|.+-+++-.+...++.......++.+ ++. .+..++.+.+.+.+|++-....++.+
T Consensus 30 ~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~---~~~--------~~~~~~~~w~y~lla~~Dv~aN~~~v 97 (334)
T PF06027_consen 30 TFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGF---KKW--------LKVLKRPWWKYFLLALLDVEANYLVV 97 (334)
T ss_pred HHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhcccc---ccc--------hhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 345555554 778787655555544433322222111100 000 01122445667778999999999999
Q ss_pred hhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---------ccchhHHHHHHHHH
Q 020228 140 ESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------SFDFFGYAVVFLAN 210 (329)
Q Consensus 140 ~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---------~~~~~G~~~~l~s~ 210 (329)
.|++|++++..|++.+++.+++++++++++|+|+++.++.++++.++|+.+....|. +....|.+++++++
T Consensus 98 ~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a 177 (334)
T PF06027_consen 98 LAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGA 177 (334)
T ss_pred HHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765542 23489999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 020228 211 ITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFL 290 (329)
Q Consensus 211 ~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (329)
+++|+++++.|+..++ .+..+.+....+++.++..+...+. |..+..+.. .+...+..++..+++-+......-.
T Consensus 178 ~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p~ 252 (334)
T PF06027_consen 178 ILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVPI 252 (334)
T ss_pred HHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 5778888888888877766554322 333322222 2233344444444444444444466
Q ss_pred HHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 291 NTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 291 ~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
.++.+||+..++--......++++++++||+.
T Consensus 253 ~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~ 284 (334)
T PF06027_consen 253 VLRMSSATFFNLSLLTSDFYALIIDIFFFGYK 284 (334)
T ss_pred HHHhCccceeehHHHHhhHHHHHHHHHhcCcc
Confidence 78999999999988889999999999999875
No 21
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.3e-17 Score=142.60 Aligned_cols=242 Identities=18% Similarity=0.223 Sum_probs=186.5
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhh
Q 020228 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE 140 (329)
Q Consensus 61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 140 (329)
.-+++.+.. =.....+++.|+++...-.++... +++.. +.++|. |.+...-..+.....++|.
T Consensus 21 ~lE~L~~~~-pgsgNLITFaqFlFia~eGlif~s----kf~~~---------k~kipl---k~Y~i~V~mFF~vnv~NN~ 83 (330)
T KOG1583|consen 21 FLELLVRNE-PGSGNLITFAQFLFIATEGLIFTS----KFFTV---------KPKIPL---KDYAITVAMFFIVNVTNNY 83 (330)
T ss_pred HHHHHHHhC-CCCeeehHHHHHHHHHHhceeeec----ccccc---------CCCCch---hhhheehheeeeeeeeccc
Confidence 345566532 235678999999987665444331 12111 111343 5555556666677789999
Q ss_pred hccc-cchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee---cCccc----------------ch
Q 020228 141 SVRG-VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA---RDLSF----------------DF 200 (329)
Q Consensus 141 al~~-~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~---~~~~~----------------~~ 200 (329)
++++ +|+|.+.++|+.+++.+++.++++.|++++.+++.+++++.+|+++++. +|... -.
T Consensus 84 al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~ 163 (330)
T KOG1583|consen 84 ALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWL 163 (330)
T ss_pred eeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHH
Confidence 9999 8999999999999999999999999999999999999999999999754 22110 15
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhc----cC-----C--ccchh
Q 020228 201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTIN----FP-----Y--LLSPG 269 (329)
Q Consensus 201 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~----~~-----~--~~~~~ 269 (329)
.|+.+...+.+.+|...++++...++++.++-|.+||+..++.|+.+.. .+|..+.|+ .+ . ..-|.
T Consensus 164 iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~---~~div~~~~~~~~se~~~~p~~g~~vP~ 240 (330)
T KOG1583|consen 164 IGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFM---GDDIVSHWRLAFKSESYLIPLLGFKVPS 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHh---cchHHHHHHHHhcCcceeccccCccccH
Confidence 8999999999999999999999999999999999999999999877642 334333221 11 1 11356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 270 FLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
.|..++.+++.-+++.-..+..-.+++++|.+++-++|+.++.++|.+.|+|+
T Consensus 241 ~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Np 293 (330)
T KOG1583|consen 241 MWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENP 293 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCC
Confidence 68888888888777776668888999999999999999999999999999875
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.71 E-value=1.2e-15 Score=135.13 Aligned_cols=205 Identities=11% Similarity=0.086 Sum_probs=163.7
Q ss_pred cHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc
Q 020228 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL 196 (329)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~ 196 (329)
++++..++...+++|++...+.+.++++++.+++|+++.+..++|++++++++|||.++++|.++.+.++|+.+...++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 35667778888999999999999999999999999999999999999999999999999999999999999999643211
Q ss_pred -----------------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh
Q 020228 197 -----------------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT 259 (329)
Q Consensus 197 -----------------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~ 259 (329)
+....|+++.+++++++|+..++.||++|+.+.+.+.........+.++.++..... |+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~ 171 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAI 171 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence 113689999999999999999999999998777777777777777777776654332 22222
Q ss_pred hc--cCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCcccc
Q 020228 260 IN--FPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHT 326 (329)
Q Consensus 260 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~~~ 326 (329)
.+ +-..+++..|..++..++.|.... ..+|+.+...-.....+..+++.++++++||...-..
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllva----~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~ 236 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLVA----FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS 236 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 11 122334555666666666665544 4789999999999999999999999999998664443
No 23
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.65 E-value=3.6e-14 Score=128.97 Aligned_cols=194 Identities=18% Similarity=0.149 Sum_probs=138.9
Q ss_pred HHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc-ccc
Q 020228 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL-SFD 199 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~-~~~ 199 (329)
+.....-++.......+.+.++++.|++....+..+.|+++.+++.+++||+++++++.++.+++.|+.+...++. +.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~ 142 (281)
T TIGR03340 63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHR 142 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3344444556778888999999999999999999999999999999999999999999999999999988654332 345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-hHHHH---HHHHH-HHHHHHHHHHhCChhhhhccCCccchhHHHHH
Q 020228 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSF-GLMWC---NGVIC-GPLLLLWTFLRGDLETTINFPYLLSPGFLVVL 274 (329)
Q Consensus 200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~-~l~~~---~~~~~-~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l 274 (329)
..|..++++++++++.|.+..|+..++ .++. ....+ ..... .++.. .....++.. .. ..+...+..+
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~---~~~~~~~~~~ 214 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALG--VPAFYSALGYLGIGFLAMGWPFLL-LYLKRHGRS--MF---PYARQILPSA 214 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccc--hhcccccHHHHHHHHHHHHHHHHH-HHHHHhccc--hh---hhHHHHHHHH
Confidence 678889999999999999988876432 2222 12222 22222 22221 111112210 00 0111223344
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
...++.+.......+.++++.++...+...++.|+.++++|++++||.
T Consensus 215 ~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~ 262 (281)
T TIGR03340 215 TLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER 262 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC
Confidence 455555556666678899999999999999999999999999999987
No 24
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.62 E-value=1.4e-12 Score=118.20 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=166.7
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHH
Q 020228 57 LLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMV 136 (329)
Q Consensus 57 ~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (329)
......|..... ...+....+.|.....+......+.+..+.+ +...+ ..+..+.-++.......
T Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~ 85 (292)
T COG0697 21 LSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEPRGLR-----------PALRP--WLLLLLLALLGLALPFL 85 (292)
T ss_pred HHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhccccc-----------ccccc--hHHHHHHHHHHHHHHHH
Confidence 333344665553 2334556666888777764333332211000 00011 12233444456778888
Q ss_pred HhhhhccccchhHHHHHHhHHHHHHHHHHH-HHhCcccCccchhhhhhhhhhheeeeecCcccc---hhHHHHHHHHHHH
Q 020228 137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEY-FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFD---FFGYAVVFLANIT 212 (329)
Q Consensus 137 ~~n~al~~~~vs~~~il~s~~pv~~~l~~~-~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~---~~G~~~~l~s~~~ 212 (329)
+.+.++++++++..+++.++.|+++.+++. +++|||++++++.++.+.+.|+.+...++...+ ..|..++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~ 165 (292)
T COG0697 86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALL 165 (292)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 777999999999999999999999887766443 5899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchhHHH-HHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHH-HHHHHHH
Q 020228 213 TAIYLATIARIGKSSGLNSFGLMW-CNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFF-LNYSIFL 290 (329)
Q Consensus 213 ~a~~~i~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 290 (329)
+|++.+..|+.. +.++....+ +... . ..+........+. +.......|..+...++++.. .....+.
T Consensus 166 ~a~~~~~~~~~~---~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (292)
T COG0697 166 WALYTALVKRLS---RLGPVTLALLLQLL-L-ALLLLLLFFLSGF------GAPILSRAWLLLLYLGVFSTGLAYLLWYY 234 (292)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHH-H-HHHHHHHHHhccc------cccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 345556555 3332 1 1111111111111 011233446677777777765 5555578
Q ss_pred HHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 291 NTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 291 ~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
.+++.++...++....+++.+.+++++++||.
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~ 266 (292)
T COG0697 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEP 266 (292)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999987
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.56 E-value=4.9e-14 Score=116.19 Aligned_cols=121 Identities=26% Similarity=0.357 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhc---cCC--c-cchhH
Q 020228 202 GYAVVFLANITTAIYLATIARIGKS-----SGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTIN---FPY--L-LSPGF 270 (329)
Q Consensus 202 G~~~~l~s~~~~a~~~i~~~~~~~~-----~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~---~~~--~-~~~~~ 270 (329)
|++++++|.++.|+++++.|+.+++ .+.++.++++|+++.+.+.+++..+..|+...... ... . .++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7899999999999999999999887 68999999999999999999998877766542211 111 1 14566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 271 LVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+..++.+|++++..|++.+.+++++||+++++++++|++..+++|+++|||.
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~ 132 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP 132 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 7888999999999999999999999999999999999999999999999976
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.54 E-value=1.2e-13 Score=124.69 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=149.6
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---
Q 020228 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--- 196 (329)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--- 196 (329)
..|.-+.++.+..+..++.|.||++.+++..+++.+++-+||.+++.++.+||++..|.+++++.+.|+++++.+|.
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 34444555556667888999999999999999999999999999999999999999999999999999999987743
Q ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCchhHHHHHHHHHHHHHHHHHHH---hCChhhhhccCCcc
Q 020228 197 -----SFDFFGYAVVFLANITTAIYLATIARIGKSS--GLNSFGLMWCNGVICGPLLLLWTFL---RGDLETTINFPYLL 266 (329)
Q Consensus 197 -----~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~--~~~~~~l~~~~~~~~~~~l~~~~~~---~ge~~~~~~~~~~~ 266 (329)
+-...|.++++++++.+|.|.++.||...++ +.+--....|..++..+++.|..++ +++ +.++.| .
T Consensus 238 ~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~--e~F~lP--~ 313 (416)
T KOG2765|consen 238 SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGE--ERFELP--S 313 (416)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhcc--CcccCC--C
Confidence 2348999999999999999999999998766 4454444556666666555543321 233 112333 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC
Q 020228 267 SPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN 321 (329)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~ 321 (329)
+.++-.+++.+++..+..-+...++.-.|||++.++.-.+...++++.-.++-|+
T Consensus 314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~ 368 (416)
T KOG2765|consen 314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGK 368 (416)
T ss_pred CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCC
Confidence 3333344455555667777888889999999999988888777777776665443
No 27
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=125.50 Aligned_cols=258 Identities=10% Similarity=0.037 Sum_probs=180.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccc--ccCCCCCccCCCCCccccHH
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIIN--FTMGDSLMTSDSSSTFVPLK 119 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 119 (329)
+.++.....-+..+.+++...|-+..+ |..+.-.|+++-.+..+.+.-..+.. .|+ .+|
T Consensus 37 ~~gl~l~~vs~ff~~~~vv~t~~~e~~-----p~e~a~~r~l~~mlit~pcliy~~~~v~gp~----------g~R---- 97 (346)
T KOG4510|consen 37 NLGLLLLTVSYFFNSCMVVSTKVLEND-----PMELASFRLLVRMLITYPCLIYYMQPVIGPE----------GKR---- 97 (346)
T ss_pred ccCceehhhHHHHhhHHHhhhhhhccC-----hhHhhhhhhhhehhhhheEEEEEeeeeecCC----------CcE----
Confidence 344333333366777777777776642 55566666444433333322111111 111 111
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---
Q 020228 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--- 196 (329)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--- 196 (329)
+.++.=|+.........++|++|.+++.+.++-..+|+||.+++++++||++++...++..+.+.||+++..+..
T Consensus 98 --~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG 175 (346)
T KOG4510|consen 98 --KWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFG 175 (346)
T ss_pred --EEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccC
Confidence 112222666677777889999999999999999999999999999999999999999999999999999754311
Q ss_pred -----------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCc
Q 020228 197 -----------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYL 265 (329)
Q Consensus 197 -----------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~ 265 (329)
+.+..|.+.++.++++.|---+..|++-+ +.+....+.|-..++.+..++.....|+ +..|+-
T Consensus 176 ~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig~----~~lP~c 249 (346)
T KOG4510|consen 176 DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIGA----VQLPHC 249 (346)
T ss_pred CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhccc----eecCcc
Confidence 23457888888888888887788888877 4466666666676666665554444454 333432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC-Ccccccc
Q 020228 266 LSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN-FGLHTYC 328 (329)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~-~~~~~~~ 328 (329)
...|+.+...|+.|+..+....+.+++=-|-..++..+..-+.+.+.-+++||| +++.|||
T Consensus 250 --gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~ 311 (346)
T KOG4510|consen 250 --GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWV 311 (346)
T ss_pred --ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhh
Confidence 233667788899999999988888776666677888999999999999999975 4777776
No 28
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.52 E-value=9.5e-13 Score=114.43 Aligned_cols=270 Identities=19% Similarity=0.187 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----cCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCc---cC-CCCCccccH
Q 020228 48 AISYMACAVLLVMFNKAALS-----SYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLM---TS-DSSSTFVPL 118 (329)
Q Consensus 48 ~~~~~~~s~~~~~~nK~ll~-----~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~ 118 (329)
..+...++..-+++.||.-+ .-+|..|..-+..-++.-+.++.++...+...-++.+.-+ +. ++++ |.
T Consensus 8 s~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~---pf 84 (372)
T KOG3912|consen 8 SLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSS---PF 84 (372)
T ss_pred hhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccC---CC
Confidence 44555666667778999775 2357778755555444444455444332211111111100 00 1111 11
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc--
Q 020228 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL-- 196 (329)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~-- 196 (329)
+ =+.++|.++|-....-.-|.++.+++++.+|++|....+|+.+++.-++++++..++|+++..+.+|++.+...|.
T Consensus 85 ~-p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~ 163 (372)
T KOG3912|consen 85 N-PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHL 163 (372)
T ss_pred C-cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccc
Confidence 1 1356788999888888899999999999999999999999999999999999999999999999999998765432
Q ss_pred --------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH----H-hCChhh-----
Q 020228 197 --------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTF----L-RGDLET----- 258 (329)
Q Consensus 197 --------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~----~-~ge~~~----- 258 (329)
+.-..|..+.+++.+.-|++.++.+|.+++++.+|.+...|..+++.+++-.+.. + .|+-..
T Consensus 164 ~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g 243 (372)
T KOG3912|consen 164 VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRG 243 (372)
T ss_pred ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCc
Confidence 3337899999999999999999999999999999999999999988554443321 1 121100
Q ss_pred hhc-----cCC-ccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC
Q 020228 259 TIN-----FPY-LLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN 321 (329)
Q Consensus 259 ~~~-----~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~ 321 (329)
.++ +.. ...|.....+...-+.-.+.|++.....|..|+++..+...+|.....+++.....|
T Consensus 244 ~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E 312 (372)
T KOG3912|consen 244 VLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE 312 (372)
T ss_pred chhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 000 000 011211122222222234578888888999999999999999999999988765543
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.52 E-value=6e-12 Score=114.81 Aligned_cols=241 Identities=13% Similarity=0.095 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
.++++++|+...+. .|++. +++.+... +...+.++........+ .|+. .+++.+..
T Consensus 6 ~lia~~~wGs~g~~----~k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~--~~~~------------~~~~~~~~ 61 (290)
T TIGR00776 6 ALIPALFWGSFVLI----NVKIG---GGPYSQTL---GTTFGALILSIAIAIFV--LPEF------------WALSIFLV 61 (290)
T ss_pred HHHHHHHHhhhHHH----HhccC---CCHHHHHH---HHHHHHHHHHHHHHHHh--CCcc------------cccHHHHH
Confidence 35677888877664 36655 55655433 45555554444332211 0100 01223333
Q ss_pred HhHHHHHHHHHHHHhhhhccccchhHHHHHHh-HHHHHHHHHHHHHhCcccCccc----hhhhhhhhhhheeeeecCcc-
Q 020228 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPV----VGSVGLIILGAFVAGARDLS- 197 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s-~~pv~~~l~~~~~~~e~~~~~~----~~sv~~~~~Gv~l~~~~~~~- 197 (329)
-+.-|+.....+.+...|.++++++.+..+-. +.+++..+.+.+++||+.++++ +.+++++++|+.+.+..+.+
T Consensus 62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~ 141 (290)
T TIGR00776 62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS 141 (290)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc
Confidence 34445557778899999999999999999888 8888999999999999999999 99999999999997543211
Q ss_pred ------cc-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH---HH-HHHHHHHHHHhCChhhhhccCCcc
Q 020228 198 ------FD-FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGV---IC-GPLLLLWTFLRGDLETTINFPYLL 266 (329)
Q Consensus 198 ------~~-~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~---~~-~~~l~~~~~~~ge~~~~~~~~~~~ 266 (329)
.+ ..|++++++++++++.|.+..|+. ++++.+..+.+.. ++ ..+..+. . + +.+ .
T Consensus 142 ~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~-----~~~-~- 206 (290)
T TIGR00776 142 AGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH---I-L-----AKP-L- 206 (290)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH---h-c-----ccc-h-
Confidence 33 689999999999999999999975 3577777444433 33 3222222 1 0 001 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHhhchhhHHHHHHHHhhhcCCc
Q 020228 267 SPGFLVVLCFSCILAFFLNYSIFLNTT-LNSAVTQTICGNLKVCFPTTLHIAIATNFG 323 (329)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~i~-~~sa~t~si~~~~k~i~~~~~s~~~f~~~~ 323 (329)
.+..+......|++....+...+...+ +.++.+.++..+.+++.+++.+++++||..
T Consensus 207 ~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~ 264 (290)
T TIGR00776 207 KKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK 264 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 122233334477775444545557778 999999999999999999999999999873
No 30
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.1e-11 Score=112.17 Aligned_cols=260 Identities=14% Similarity=0.109 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHHHHhHHHH
Q 020228 53 ACAVLLVMFNKAALSSY--NFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAV 129 (329)
Q Consensus 53 ~~s~~~~~~nK~ll~~~--~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
+-..++.+..||.-.+. .|.+.....+.+.+-..++...+.+- +...-+..+.+. + .....+++..++...++
T Consensus 25 ~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~--~--~i~~~~~~~lk~~vPa~ 100 (345)
T KOG2234|consen 25 AQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLS--K--EILAAPRETLKVSVPAL 100 (345)
T ss_pred HHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcC--H--HHHhChHHHHHHHHHHH
Confidence 33456667778877654 34434445555554443333333221 110000000000 0 01122445667788888
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC-----------ccc
Q 020228 130 AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD-----------LSF 198 (329)
Q Consensus 130 ~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~-----------~~~ 198 (329)
.|++...+...++.+.+.+++|+.-.+..+.|+++.+++++||.++++|.++++.+.|+.+...+. .+.
T Consensus 101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n 180 (345)
T KOG2234|consen 101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQN 180 (345)
T ss_pred HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999964211 123
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh--hccCCccchhHHHHHHH
Q 020228 199 DFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT--INFPYLLSPGFLVVLCF 276 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~--~~~~~~~~~~~~~~l~~ 276 (329)
.+.|+...+.+++++++..++.++++++.+.+-|-.......++.++.+.....+ |.... ..+-+.++...|..++.
T Consensus 181 ~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vVl~ 259 (345)
T KOG2234|consen 181 PFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVVLL 259 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHHHH
Confidence 5899999999999999999999999987776766666666677777766655443 33333 22334456667888888
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC
Q 020228 277 SCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN 321 (329)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~ 321 (329)
.++.|....+ ++|+.+...-.....+..+++.+.|+.+||-
T Consensus 260 ~a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~ 300 (345)
T KOG2234|consen 260 NAVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDF 300 (345)
T ss_pred HhccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888866655 6788888888888888999999999777754
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.35 E-value=2.7e-10 Score=98.04 Aligned_cols=228 Identities=17% Similarity=0.117 Sum_probs=172.4
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhh
Q 020228 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE 140 (329)
Q Consensus 61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 140 (329)
+.|.++-..| +.-.+.+|...+.+.+....|-.+ .+.++++++.+..+|+....++.+.+.
T Consensus 30 ~Ak~LFP~vG---~~g~t~lRl~~aaLIll~l~RPwr----------------~r~~~~~~~~~~~yGvsLg~MNl~FY~ 90 (292)
T COG5006 30 FAKSLFPLVG---AAGVTALRLAIAALILLALFRPWR----------------RRLSKPQRLALLAYGVSLGGMNLLFYL 90 (292)
T ss_pred HHHHHccccC---hhhHHHHHHHHHHHHHHHHhhHHH----------------hccChhhhHHHHHHHHHHHHHHHHHHH
Confidence 3577775443 566899999988877766554211 123567789999999999999999999
Q ss_pred hccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee---cCcccchhHHHHHHHHHHHHHHHH
Q 020228 141 SVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA---RDLSFDFFGYAVVFLANITTAIYL 217 (329)
Q Consensus 141 al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~---~~~~~~~~G~~~~l~s~~~~a~~~ 217 (329)
|++.+|.+.+..+.++.|+.+.+++. |+ .+....+.+.+.|..+..- +..+.|+.|..+++.+..|+|.|.
T Consensus 91 si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YI 164 (292)
T COG5006 91 SIERIPLGIAVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYI 164 (292)
T ss_pred HHHhccchhhhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999998877662 22 2344455666677766422 223568999999999999999999
Q ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHhccc
Q 020228 218 ATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSI-FLNTTLNS 296 (329)
Q Consensus 218 i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~s 296 (329)
+..||.-+ ..+...-+.+...++.++.+|......+ +...+|..+..-+..++++..+-++. ..++++.+
T Consensus 165 v~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 165 VLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence 99999986 3455566667777777777776543222 22234554555566777777777766 77899999
Q ss_pred hhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 297 AVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 297 a~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+-++++.-.++|....+.|++++||.
T Consensus 236 ~~~F~~LlSLePa~aAl~G~i~L~e~ 261 (292)
T COG5006 236 ARTFGTLLSLEPALAALSGLIFLGET 261 (292)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999986
No 32
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.34 E-value=8.6e-10 Score=97.28 Aligned_cols=255 Identities=13% Similarity=0.055 Sum_probs=179.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccc--ccccCCCCCccCCCCCccccHH
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKI--INFTMGDSLMTSDSSSTFVPLK 119 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
++|++.++.-+.....+.+.-|.+-. .| +..+...|.+-+..++.+.....+ .++++ . ..+++
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-----~------~~~p~ 70 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQ-----L------LKQPK 70 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----H------HhCcH
Confidence 35544444444444455677788774 23 677999999988877766544321 11110 0 01123
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccc
Q 020228 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFD 199 (329)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~ 199 (329)
.+-.....++....++....+|...-.+=.+..--...|.+.++++.+++|||+++.+++++++..+||..-.....+++
T Consensus 71 ~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp 150 (293)
T COG2962 71 TLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP 150 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 44555666677888888999999998888888889999999999999999999999999999999999999777666777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHH
Q 020228 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCI 279 (329)
Q Consensus 200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~ 279 (329)
+.. +.=++.+++|... ||.. +.++.+-......+-.|..+.+....++-.+ +....+...+.++...|.
T Consensus 151 wva----l~la~sf~~Ygl~-RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~ 219 (293)
T COG2962 151 WVA----LALALSFGLYGLL-RKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGL 219 (293)
T ss_pred HHH----HHHHHHHHHHHHH-HHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhH
Confidence 654 4446788899865 4443 4677776666666666666655544333221 111123445677777887
Q ss_pred HHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 280 LAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 280 ~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
.+..--.+-..+-|+.+=.+..+.++.+|....+++++++||.
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~ 262 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEP 262 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7655444445578999999999999999999999999999886
No 33
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.00 E-value=2.2e-09 Score=94.12 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=116.3
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---------------------------c
Q 020228 145 VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------------------------S 197 (329)
Q Consensus 145 ~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---------------------------~ 197 (329)
+++|.+...|+..++++++.+....+|+++..++++.+++..|+.....+|. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5789999999999999999999999999999999999999999875322111 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH-----HH-hCChhhhhccCCccchhHH
Q 020228 198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWT-----FL-RGDLETTINFPYLLSPGFL 271 (329)
Q Consensus 198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-----~~-~ge~~~~~~~~~~~~~~~~ 271 (329)
....|....+.+.+++++..++.++..++++. ++|.+.++.++..+.. .. .++....+.+...++...|
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-----MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-----chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence 24677777888888889999999998764432 2455444433332221 11 1111111111111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 272 VVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
..++. ......+..+++|+.++.+.+++...+++.+.++|+++|||.
T Consensus 157 ~~~~~----~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ 203 (222)
T TIGR00803 157 IVGLL----NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK 203 (222)
T ss_pred HHHHH----HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333 333444567799999999999999999999999999999876
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.77 E-value=2.2e-08 Score=83.29 Aligned_cols=172 Identities=15% Similarity=0.199 Sum_probs=129.0
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc--c
Q 020228 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--S 197 (329)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--~ 197 (329)
.+++..|++++..+..+....+++.++.+.++.+-.+.-.|+.+++++.+|+++...++++.++.+.|+++.++.|. .
T Consensus 52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999987665 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH--------HHHHHHHHHHhCC--hhhhhccCCccc
Q 020228 198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVIC--------GPLLLLWTFLRGD--LETTINFPYLLS 267 (329)
Q Consensus 198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~--------~~~l~~~~~~~ge--~~~~~~~~~~~~ 267 (329)
.++.|+.+++.|+...|+|.++.|+...+.+.. +...+++-++ .+.+. ...+|- |++ +.+
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G--daa~FmS~LGF~NL~~~~~~~lI--L~~T~VE~~qs---FA~--- 201 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFG--DAAHFMSCLGFFNLCFISFPALI--LAFTGVEHLQS---FAA--- 201 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHhhhHHH--HHHhchHHHHH---Hhh---
Confidence 579999999999999999999999998754333 2222322222 22111 122332 221 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 020228 268 PGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTI 302 (329)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si 302 (329)
..|..++..+.+....|+.....+..+.|...|+
T Consensus 202 -~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISi 235 (290)
T KOG4314|consen 202 -APWGCLCGAAGLSLAFNFLINFGIALLNPILISI 235 (290)
T ss_pred -CCchhhhhHHHHHHHHhhheeehhhhhchhhhee
Confidence 1156666666666667777666677777766654
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.76 E-value=3e-08 Score=78.11 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=91.8
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHH-HHHHHHH
Q 020228 59 VMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVA-YLLYMVV 137 (329)
Q Consensus 59 ~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (329)
...+|...++ +| |...+++|+..+.+ +.+.......+.+ .+.+.+++......+++ ..+...+
T Consensus 7 ~~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 7 SVFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKPF------------KNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred HHHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhccccc------------cCCChhhhhhhhHhhccceehHHHH
Confidence 4467988875 45 77899999999986 4433322111100 11244556677777776 5888999
Q ss_pred hhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228 138 SVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 138 ~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
.+.++++.+++..+++..+.|+++.+++++++||+++++++.+++++++|+.+.
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998764
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.73 E-value=2.1e-08 Score=78.28 Aligned_cols=76 Identities=11% Similarity=0.204 Sum_probs=66.6
Q ss_pred HHHHhHHHHHHH-HHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcc
Q 020228 121 LMHTLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS 197 (329)
Q Consensus 121 ~~~~~~~~~~~~-~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~ 197 (329)
+......+++.. ....+.+.|+++.| +....+.++.|+++++++.+++|||++++++.+++++++|+++...+|.+
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 445556566554 88889999999999 68889999999999999999999999999999999999999998877754
No 37
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.56 E-value=6.6e-08 Score=83.56 Aligned_cols=235 Identities=11% Similarity=0.039 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHH
Q 020228 55 AVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLY 134 (329)
Q Consensus 55 s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
..+..+.+.++-.. +.+.|..=++.....-.++-..+..+++ + .-.-.+++.+.+++.-.-.
T Consensus 30 ~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~----------------~~~~~~~hYilla~~DVEa 91 (336)
T KOG2766|consen 30 ITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-K----------------YIKAKWRHYILLAFVDVEA 91 (336)
T ss_pred HHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-H----------------HHHHHHHHhhheeEEeecc
Confidence 33444556666653 5677876665555444444433333221 1 0112356677777666556
Q ss_pred HHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc--------ccchhHHHHH
Q 020228 135 MVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--------SFDFFGYAVV 206 (329)
Q Consensus 135 ~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--------~~~~~G~~~~ 206 (329)
.++-..|.||++....+.+-+-..+.+++++++++|.|+.+.++.++++-+.|+.+...+|. +....|.++.
T Consensus 92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lv 171 (336)
T KOG2766|consen 92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLV 171 (336)
T ss_pred cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEE
Confidence 66777899999999999999999999999999999999999999999999999998765443 2347899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHH
Q 020228 207 FLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNY 286 (329)
Q Consensus 207 l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (329)
++++-++|..++..+.+.+ +.+..+++....+++.++..+=.+ .+. ... ..-+ ++.. ....+...++-|...-
T Consensus 172 i~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ~i-~~~-~~~-~tl~-w~~~-i~~yl~f~L~MFllYs 244 (336)
T KOG2766|consen 172 IAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQFI-FER-HHV-STLH-WDSA-IFLYLRFALTMFLLYS 244 (336)
T ss_pred EecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHh-hhc-cce-eeEe-ehHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999988 568889888888877776654322 111 111 0011 1111 1112222222222222
Q ss_pred HHHHHHhccchhHHHHhhchhhHHHHHH
Q 020228 287 SIFLNTTLNSAVTQTICGNLKVCFPTTL 314 (329)
Q Consensus 287 ~~~~~i~~~sa~t~si~~~~k~i~~~~~ 314 (329)
..=..+|.+|++.+++--.....+++++
T Consensus 245 l~pil~k~~~aT~~nlslLTsDmwsl~i 272 (336)
T KOG2766|consen 245 LAPILIKTNSATMFNLSLLTSDMWSLLI 272 (336)
T ss_pred hhHHheecCCceEEEhhHhHHHHHHHHH
Confidence 2235688999998888877888888777
No 38
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.53 E-value=8e-07 Score=68.97 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-cccccccCCCCCccCCCCCccccHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRR-WKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
+++++++|+.. .+..|.-+.+. + |.+=+..|.++..+.+..... .|+.+.+ ..++.|.+.
T Consensus 8 ALLsA~fa~L~----~iF~KIGl~~v--d-p~~At~IRtiVi~~~l~~v~~~~g~~~~~------------~~~~~k~~l 68 (140)
T COG2510 8 ALLSALFAGLT----PIFAKIGLEGV--D-PDFATTIRTIVILIFLLIVLLVTGNWQAG------------GEIGPKSWL 68 (140)
T ss_pred HHHHHHHHHHH----HHHHHHhcccc--C-ccHHHHHHHHHHHHHHHHHHHhcCceecc------------cccCcceeh
Confidence 45556666544 44679888744 4 778899999988877766543 3333221 113444555
Q ss_pred HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
....-|+.-..++.+.+.|++.-++|-..-+-.++|+++.+++.+++||+++.++++++.++.+|+.+.+.
T Consensus 69 flilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 69 FLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 56666777888999999999999999999999999999999999999999999999999999999988653
No 39
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.43 E-value=8.6e-06 Score=72.80 Aligned_cols=132 Identities=13% Similarity=0.043 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
++...+++-..+........|....+.+ +.+..+..+++..+.+++.+.......+ . ..+.+++.
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~----------~~~~~~~~ 192 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEG-PELLQFTGWVLLLGALLLLPFAWFLGPN----P----------QALSLQWG 192 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHhcCCC----C----------CcchHHHH
Confidence 3433333333333444556788886543 2234455577888877766654431111 0 01344555
Q ss_pred HHhHHHHH-HHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhe
Q 020228 123 HTLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF 189 (329)
Q Consensus 123 ~~~~~~~~-~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~ 189 (329)
..+..+++ ......+.+.++++.+++...++..+.|++.+++++++++|+++..++.++.+++.|+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 193 ALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 56666665 46778899999999999999999999999999999999999999999999999999863
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.37 E-value=5e-05 Score=67.67 Aligned_cols=193 Identities=11% Similarity=0.064 Sum_probs=141.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchh----hhhhhhhhheeeee
Q 020228 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVG----SVGLIILGAFVAGA 193 (329)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~----sv~~~~~Gv~l~~~ 193 (329)
+.+..-+.-|++.++.+.....|.+++.+|...-+ -....+.+.+.++++++|..+..++. +++++++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 44555667778999999999999999988866655 46788889999999999998877664 88889999999776
Q ss_pred cCcc--------cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCc
Q 020228 194 RDLS--------FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYL 265 (329)
Q Consensus 194 ~~~~--------~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~ 265 (329)
.|.+ ....|+...+++.+.+..|.+..|-. +.++++..+=+.+-......++....++ +.
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~~--~~------ 190 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSKK--PF------ 190 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcccc--cc------
Confidence 5432 22579999999999999999997663 4688877765544333333333222211 11
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCcc
Q 020228 266 LSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGL 324 (329)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~ 324 (329)
.+... +.-+.+|++=-..|++.+...+..+..+.=..+.+..+.+.+.|.+++||.+-
T Consensus 191 ~~k~~-~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt 248 (269)
T PF06800_consen 191 FEKKS-WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT 248 (269)
T ss_pred cccch-HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCc
Confidence 11111 23355666666778888888888888888888889999999999999999864
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.25 E-value=1.7e-05 Score=61.69 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH
Q 020228 203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF 282 (329)
Q Consensus 203 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (329)
.+|++++++++++-.++.|-=++ +.||..-+..-++....++..+...+|.++. +...++..|..++++|+.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~----~~~~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQA----GGEIGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceec----ccccCcceehhhhHHHHHHH
Confidence 58999999999999999888777 6688877777788888888888788888653 22234566888999998888
Q ss_pred HHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC-ccccc
Q 020228 283 FLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF-GLHTY 327 (329)
Q Consensus 283 ~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~-~~~~~ 327 (329)
..-.+-|++++.-.+.......-..++.++++|++++||. +..+|
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~ 124 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTW 124 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHH
Confidence 8777889999999999999999999999999999999875 44443
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.03 E-value=1.8e-05 Score=61.47 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228 129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 129 ~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~ 192 (329)
+++....++...+++.+|++.+..+.++.++++.+.+++++||++++++++++.++++|+++.+
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999999999999999999999999999999999999998754
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.01 E-value=0.00017 Score=58.92 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHH
Q 020228 49 ISYMACAVLLVMFNKAALSS-----YNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 49 ~~~~~~s~~~~~~nK~ll~~-----~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
+....++..-....|..+.+ .+.+ +..+..+....+.+.+.+.... +..+..+... .. ...+...+.+.+.
T Consensus 6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~-~~-~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 6 LASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFS-EI-FGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-Hh-hhhhhcchHHHHH
Confidence 33334444445566777776 4555 5566666666666666655332 2111100000 00 0000000224455
Q ss_pred HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~ 192 (329)
.++..+++.....+.++..+++++.-+++++.....+.+.+++.++++|+++..++.++.+.+.|+.+.+
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 5566667777888899999999999999999999999999999999999999999999999999998764
No 44
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.96 E-value=3.7e-05 Score=60.25 Aligned_cols=104 Identities=21% Similarity=0.194 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHH-HHHHHHHH
Q 020228 211 ITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA-FFLNYSIF 289 (329)
Q Consensus 211 ~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 289 (329)
+++|.+.+..|+..+ +.++....++....+.+ +++.....+... ....++..+......+.++ ...+...+
T Consensus 1 ~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLYF 72 (126)
T ss_pred ceeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhcccc-----ccCCChhhhhhhhHhhccceehHHHHHH
Confidence 357888999999988 47999999999998887 555544433322 1112233345556666664 66666678
Q ss_pred HHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 290 LNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 290 ~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
.+++++++...++..+++++.+.+++++++||.
T Consensus 73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~ 105 (126)
T PF00892_consen 73 YALKYISASIVSILQYLSPVFAAILGWLFLGER 105 (126)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999876
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.88 E-value=0.00037 Score=63.83 Aligned_cols=123 Identities=9% Similarity=-0.037 Sum_probs=90.1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHH
Q 020228 195 DLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVL 274 (329)
Q Consensus 195 ~~~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l 274 (329)
|.+....|+++.++++++++...+..|.. . +.++.++.++...++.+.+.+.....++.....+. ..++..+...
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~ 76 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQKIFML 76 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHHHHHH
Confidence 33445689999999999999999999764 4 58999999999999887776665444443221110 0122223333
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
...+++....+.+.+++++++++...++..+..|+.+.++++++++|.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~ 124 (296)
T PRK15430 77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER 124 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444455566668899999999999999999999999999999876
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.88 E-value=0.00032 Score=65.89 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=82.8
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhh
Q 020228 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE 140 (329)
Q Consensus 61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 140 (329)
..|....+ +|.+...++++.++..+...+..... + +. +. +......+... ..++-.++.-.+...++|.
T Consensus 207 l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~--~-~~-~~----~~~~~~~~~~~-~~i~y~~i~t~lay~lw~~ 275 (358)
T PLN00411 207 LQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVV--E-KN-NP----SVWIIHFDITL-ITIVTMAIITSVYYVIHSW 275 (358)
T ss_pred HHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHH--c-cC-Cc----ccceeccchHH-HHHHHHHHHHHHHHHHHHH
Confidence 45666653 46566778888877766554433220 0 00 00 00000012221 1223333444556778999
Q ss_pred hccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 141 SVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 141 al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
++++.+++...+...+.|++.+++++++++|+++..++++.++++.|+.+...
T Consensus 276 ~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 276 TVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988654
No 47
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.81 E-value=0.0005 Score=61.44 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhh-ccCCccchhHHHHHHHHHH
Q 020228 201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTI-NFPYLLSPGFLVVLCFSCI 279 (329)
Q Consensus 201 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~-~~~~~~~~~~~~~l~~~~~ 279 (329)
.|+++.++++++++...+..|. .. +.++.++.++-..++.+.+.++....++..... +.........+..+...++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4899999999999999999987 44 489999999999998877766554444322110 1111111112344566676
Q ss_pred HHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 280 LAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 280 ~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+......+.+.+++++++...++..+..|+.+.++++++++|.
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek 121 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER 121 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666666778899999999999999999999999999999876
No 48
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.77 E-value=0.00048 Score=62.88 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHH-HHHHHHHhhhhccccchhHHHH
Q 020228 74 ANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVA-YLLYMVVSVESVRGVNVPMYTT 152 (329)
Q Consensus 74 p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~al~~~~vs~~~i 152 (329)
+...+.+|+..+.+.+.+...... ... ....+.+.+..+...+++ ..+...+.+.++++.+.+...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~ 244 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSG-ERL-----------TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATS 244 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcC-Ccc-----------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 445677888888776655543210 000 000133455566666665 4567779999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec
Q 020228 153 LRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194 (329)
Q Consensus 153 l~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~ 194 (329)
+..+.|++.+++++++++|+++..++.+..+++.|+.+....
T Consensus 245 ~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 245 YAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886543
No 49
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.71 E-value=0.0007 Score=61.98 Aligned_cols=195 Identities=12% Similarity=0.063 Sum_probs=111.3
Q ss_pred HHhHHHH-HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee-c-C-c-c
Q 020228 123 HTLPLAV-AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA-R-D-L-S 197 (329)
Q Consensus 123 ~~~~~~~-~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~-~-~-~-~ 197 (329)
..+..|+ .+.++...+..|+.+.|.+..+-+.+...++..+++..++|||++++.+.++.+++.|..+... + + . .
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~ 130 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPI 130 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCc
Confidence 3355554 4567778999999999999999999999999999999999999999999999999999987532 1 1 1 0
Q ss_pred cc------------hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH---HHHHHHHHHHHHHhCChhhhh-c
Q 020228 198 FD------------FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNG---VICGPLLLLWTFLRGDLETTI-N 261 (329)
Q Consensus 198 ~~------------~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~---~~~~~~l~~~~~~~ge~~~~~-~ 261 (329)
.+ ...+....... ...+.....+|. ....++.|.. .++..-.+..-....-..... .
T Consensus 131 ~t~~~l~~~~~~~~fl~y~~~~~~~-~~~L~~~~~~r~------g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g 203 (300)
T PF05653_consen 131 HTLDELIALLSQPGFLVYFILVLVL-ILILIFFIKPRY------GRRNILVYISICSLIGSFTVLSAKAISILIKLTFSG 203 (300)
T ss_pred CCHHHHHHHhcCcceehhHHHHHHH-HHHHHHhhcchh------cccceEEEEEEeccccchhhhHHHHHHHHHHHHhcC
Confidence 11 11121111111 111111111111 1111222322 222111111000000000000 0
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhch-hhHHHHHHHHhhhcCCcc
Q 020228 262 FPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNL-KVCFPTTLHIAIATNFGL 324 (329)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~-k~i~~~~~s~~~f~~~~~ 324 (329)
.++..++..|..++....++....+..+.++++.++.....+.+. =...+++-|.++|+|..-
T Consensus 204 ~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~ 267 (300)
T PF05653_consen 204 DNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSR 267 (300)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhccccc
Confidence 112234556766666666666777777889998887665554443 344566667778887643
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.64 E-value=0.0014 Score=59.98 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
+.+.+++-..+........|....++ + |.... ++.+.+.+.+........ + +. ..+++.+..
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~~~--~-~~~~~-~~~~~~~~~l~~~~~~~~---~--~~---------~~~~~~~~~ 210 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGAEH--G-PATVA-IGSLIAALIFVPIGALQA---G--EA---------LWHWSILPL 210 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC--C-chHHH-HHHHHHHHHHHHHHHHcc---C--cc---------cCCHHHHHH
Confidence 33334444444444455667776543 3 44443 455555444444332211 0 00 012333333
Q ss_pred HhHHHHH-HHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228 124 TLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 124 ~~~~~~~-~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~ 192 (329)
.+..+++ ..+...+.|.++++.+.+...++-.+.|++..++++++++|+++..++++..+++.|++...
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4455655 35566689999999999999999999999999999999999999999999999999988864
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.60 E-value=0.0014 Score=60.00 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=65.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228 118 LKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~ 192 (329)
.+.+-.++..++...+...+++.++++.+++...+.-.+.|++..++++++++|+++..++.+.++++.|+.+..
T Consensus 212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 444555555555556678899999999999999999999999999999999999999999999999999987753
No 52
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.58 E-value=0.0017 Score=59.56 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=65.9
Q ss_pred cHHHHHHHhHHHHH-HHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec
Q 020228 117 PLKTLMHTLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194 (329)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~ 194 (329)
+.+.+..++-.+++ ..+...+.+.++++.+......+..+.|++..++++++++|+++..++++..++++|+.+...+
T Consensus 210 ~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 210 DMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 34555556666654 3466779999999999999999999999999999999999999999999999999999875443
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.44 E-value=0.0011 Score=60.71 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
|.+.+++...+........|....+.+.+ |..++.+|+..+.+.+.+.... ......+.+. . + ...........
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~ 220 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGF-M--Q-AISGVNVTKIY 220 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHH-H--H-hhcccCchHHH
Confidence 44444444444444455677777633444 6678899998887777665432 1100000000 0 0 00000000011
Q ss_pred H-HhHHHH-HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 123 H-TLPLAV-AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 123 ~-~~~~~~-~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
. .+..++ ++.....+.+.+++++++.++.+.-...|++++++++++++|+++..++++..+++.|+.+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1 112222 2222334666899999999999999999999999999999999999999999999999988653
No 54
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.41 E-value=0.00047 Score=54.96 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=61.9
Q ss_pred hHHH-HHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHH--HhCcccCccchhhhhhhhhhheeeeecC
Q 020228 125 LPLA-VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYF--LAGQKYTPPVVGSVGLIILGAFVAGARD 195 (329)
Q Consensus 125 ~~~~-~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~--~~~e~~~~~~~~sv~~~~~Gv~l~~~~~ 195 (329)
+..+ +++.+..++++.+++..|++.+..+.+..++.+.+.++. ++||+++..+++++.++++|+.+...++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 3344 467888999999999999999999999999888888884 8999999999999999999999876543
No 55
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.38 E-value=0.0042 Score=56.33 Aligned_cols=112 Identities=8% Similarity=0.005 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH
Q 020228 203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF 282 (329)
Q Consensus 203 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (329)
+++.+++++++|.+.+..|+..++ .++. .++....+.+.+.++....+.. ..+..+ +...|..++..++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQ-VGWSRL---PATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhccc-CCCCCc---chhhHHHHHHHHHHHH
Confidence 467899999999999999988764 2333 3555555666665654432110 111111 1223445566777777
Q ss_pred HHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 283 FLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 283 ~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
....+.+.+.++.++...++..+..++.+.+++++++||.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~ 114 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET 114 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC
Confidence 7788888899999999999999999999999999999986
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.23 E-value=0.0008 Score=52.75 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
.....+++.++.++...+++++|++.+..+ .....+.+.+.+.++++|+++..+++++.++++|+.....
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 445567788899999999999999988777 5699999999999999999999999999999999988643
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.18 E-value=0.0096 Score=55.88 Aligned_cols=145 Identities=14% Similarity=0.070 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHHHHHHHcc-cccccC-CCCCccCCCCCccc
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYN-----FPCANVITLLQMISSCSFLYFLRRWK-IINFTM-GDSLMTSDSSSTFV 116 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~-----f~~p~~l~~~q~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 116 (329)
|.+.+++-..+...-....|.++.+.+ .+ +..+..++...+.+++.+..... ..+... .+.. .......
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~---~~~~~~~ 270 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNY---TANMTNY 270 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hhccccc
Confidence 444444445555555667788886542 22 33456666777776666543311 000000 0000 0000000
Q ss_pred cH-HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228 117 PL-KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~ 192 (329)
.+ ..+..++.-++.+.+.....+.++++++..++++.-.+.|+++.+++.++++|+++..++++.++++.|+.+.+
T Consensus 271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 11 11112222223333333344469999999999999999999999999999999999999999999999998753
No 58
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.03 E-value=0.012 Score=53.74 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH----HHHHHHHHHHHcccccccCCCCCccCCCCCcccc
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMI----SSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVP 117 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (329)
++++...++-+.+.......+|+.. + + |...++.|.. .+.+..... + +.+ + .+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~--~-~~~~~~~~~~g~~~~~~~~~~~~-~----~~~---~----------~~ 207 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG--V--D-GLSVLLPQAIGMVIGGIIFNLGH-I----LAK---P----------LK 207 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--C--C-cceehhHHHHHHHHHHHHHHHHH-h----ccc---c----------hH
Confidence 4566666666666666677788652 2 2 5556666665 333333332 1 101 0 01
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhcc-ccchhHHHHHHhHHHHHHHHHHHHHhCcccCccch----hhhhhhhhhheeee
Q 020228 118 LKTLMHTLPLAVAYLLYMVVSVESVR-GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVV----GSVGLIILGAFVAG 192 (329)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~n~al~-~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~----~sv~~~~~Gv~l~~ 192 (329)
.+.....+..|++..+...+...+++ +.+++.+.++-...|+...+.+++++||+.+++++ .+.++++.|+.+..
T Consensus 208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 22233444477777777778889999 99999999999999999999999999999999999 99999999987753
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.97 E-value=0.0026 Score=48.64 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
....-+++..+.++-..+++.+|++.+-.+ -....+.+.+.+++++||+.++.+++++.++++|++..
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 344456788888899999999999977666 55899999999999999999999999999999999875
No 60
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.97 E-value=0.0022 Score=49.50 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHH-hHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 126 PLAVAYLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 126 ~~~~~~~~~~~~~n~al~~~~vs~~~il~-s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
..-+++.+..++...+++.+|++.+..+. ....+.+.+.+.+++||++++.++.++.++++|++....
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566788888889999999999888885 489999999999999999999999999999999988643
No 61
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.93 E-value=0.016 Score=53.17 Aligned_cols=142 Identities=11% Similarity=0.112 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHH
Q 020228 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
|....+++..+........|.++.+++.+ +..+.++..+.+.+...+.... ...+..+..+. .. ...+.+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f------~~-~~p~~~~ 226 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF------IS-AHPSVLL 226 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH------HH-HhHHHHH
Confidence 77777777777777788899999888765 5667777666666655544332 00011100000 00 0123456
Q ss_pred HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
.++..+++....+.+-+...+..+.-+.+++..+.-+++.+++.+++++++++..|.++++++.|..+-..
T Consensus 227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 67777777777777788888999999999999999999999999999999999999999999999987543
No 62
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.92 E-value=0.031 Score=50.12 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=67.4
Q ss_pred cHHHHHHHhHHHHHHH-HHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 117 PLKTLMHTLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 117 ~~~~~~~~~~~~~~~~-~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
+.+++......+++.. ....+.+.+++..+++....+..+.|++.++.++++++|+++..++.+..+++.|+.+...
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777665 5888999999999999999999999999999999999999999999999999999987543
No 63
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0022 Score=48.74 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=59.8
Q ss_pred HHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~ 192 (329)
.....-+++..+..+-..|++++|++.+-.+ -....+.+.+.+++++||+.+..+++++.+++.|+....
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3344456778888899999999999976655 668899999999999999999999999999999998753
No 64
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.88 E-value=0.0032 Score=48.50 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
.....+++.++.++-..+++++|++.+-.+ -....+.+.+.+.+++||++++.+++++.+++.|+...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344456677888899999999999977666 55889999999999999999999999999999999764
No 65
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.73 E-value=0.024 Score=50.75 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=94.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHH
Q 020228 198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFS 277 (329)
Q Consensus 198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~ 277 (329)
.+..|+++++.+.+.+++.-.+.|-+. +.++.|+..+-.+++.++++......+.+.+.++ ...+|..+..+.++
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~~~~~l~ 78 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTLLMLALT 78 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHHHHHHHH
Confidence 345899999999999999998887664 5799999999999999999888777777776655 23455555555555
Q ss_pred HHHHHHHHHHHH-HHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 278 CILAFFLNYSIF-LNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 278 ~~~~~~~~~~~~-~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+.. ...|+..| +++.+-..+..|.=-...|.+.+++|.++++|.
T Consensus 79 a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr 123 (293)
T COG2962 79 ALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER 123 (293)
T ss_pred HHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 544 34566664 688998999999999999999999999999985
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.014 Score=52.89 Aligned_cols=195 Identities=10% Similarity=-0.003 Sum_probs=112.7
Q ss_pred HHhHHHH-HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcc----
Q 020228 123 HTLPLAV-AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS---- 197 (329)
Q Consensus 123 ~~~~~~~-~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~---- 197 (329)
+.+..|+ .+.+.-..++.|+.+.|.+..+-+-++..+..++++..+++||++....+++.+.++|..+.+....+
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 3444554 47788889999999999999999999999999999999999999999999999999999886543211
Q ss_pred ----------cchhHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH--hCC-hhh-hhcc
Q 020228 198 ----------FDFFGY-AVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFL--RGD-LET-TINF 262 (329)
Q Consensus 198 ----------~~~~G~-~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~ge-~~~-~~~~ 262 (329)
.+ .|+ ++..+-.+...+-..+.+ .+.....++.|..+.+....+-.... .|+ ... ....
T Consensus 145 ~t~~el~~~~~~-~~Fliy~~~iil~~~il~~~~~-----p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~ 218 (335)
T KOG2922|consen 145 ESVEEVWELATE-PGFLVYVIIIILIVLILIFFYA-----PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN 218 (335)
T ss_pred ccHHHHHHHhcC-ccHHHHHHHHHHHHHHHheeec-----ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC
Confidence 11 121 111111111111111111 12233344445544443321110000 000 000 0112
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhh-chhhHHHHHHHHhhhcCCc
Q 020228 263 PYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICG-NLKVCFPTTLHIAIATNFG 323 (329)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~-~~k~i~~~~~s~~~f~~~~ 323 (329)
++...|..|..+.....|.....--.+.+.+...+...+.+. .+=+.+++..|.++|+|-.
T Consensus 219 ~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~ 280 (335)
T KOG2922|consen 219 NQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWS 280 (335)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 333445566666666666555444456777766555544444 3456667777777777643
No 67
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.62 E-value=0.36 Score=45.00 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=79.0
Q ss_pred cHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCccc---Cc----cchhhhhhhhhhh
Q 020228 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKY---TP----PVVGSVGLIILGA 188 (329)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~---~~----~~~~sv~~~~~Gv 188 (329)
+.+.+..-+.-|++..+.+.....+++++.+|...-+ -.+..++..++..++++|.. +. ....+++++++|+
T Consensus 69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi 148 (345)
T PRK13499 69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV 148 (345)
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 3445556667778889999999999999999977766 56888889999999998754 22 3457888888999
Q ss_pred eeeee----cCc---------ccchhHHHHHHHHHHHHHHHHH
Q 020228 189 FVAGA----RDL---------SFDFFGYAVVFLANITTAIYLA 218 (329)
Q Consensus 189 ~l~~~----~~~---------~~~~~G~~~~l~s~~~~a~~~i 218 (329)
++.+. .|. .....|+++++++.+.++.|..
T Consensus 149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 88655 322 1236999999999999999983
No 68
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.38 E-value=0.011 Score=44.27 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhh
Q 020228 127 LAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLI 184 (329)
Q Consensus 127 ~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~ 184 (329)
.-+++.++.++...+++++|++.+-.+ .....+.+.+.+.+++||+++..++.++.++
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334788888999999999999987554 6699999999999999999999999998764
No 69
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.16 E-value=0.14 Score=47.63 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC
Q 020228 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD 195 (329)
Q Consensus 125 ~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~ 195 (329)
...+++......+....++..++....+--.++.++.++++.+++|+++++..+++.+++++|.++....+
T Consensus 237 v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 237 VGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 33444433444455677888888888888899999999999999999999999999999999999976543
No 70
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.87 E-value=0.023 Score=43.94 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=57.1
Q ss_pred HHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
++...|+.+=.+ .....+..+...|+|.+.-+ .+++-++|.+.++++++|..+++++.++++++.|+.++
T Consensus 42 ~~y~ipf~lNq~-GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQS-GSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 355566655444 34567788999999988877 59999999999999888889999999999999999875
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.71 E-value=0.19 Score=45.08 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH
Q 020228 74 ANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL 153 (329)
Q Consensus 74 p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il 153 (329)
|+...+=|.+--.+...++......++. +++ -.+-...|+++.....+...|.+.+.++..-.+
T Consensus 164 ~~~~~lPqaiGm~i~a~i~~~~~~~~~~---------------~k~-~~~nil~G~~w~ignl~~~is~~~~G~a~af~l 227 (269)
T PF06800_consen 164 GWSAFLPQAIGMLIGAFIFNLFSKKPFF---------------EKK-SWKNILTGLIWGIGNLFYLISAQKNGVATAFTL 227 (269)
T ss_pred hhHhHHHHHHHHHHHHHHHhhccccccc---------------ccc-hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhH
Confidence 6677777877776666666543311110 111 223355688899999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhCcccCccchh----hhhhhhhhhe
Q 020228 154 RRTTVAFTMIMEYFLAGQKYTPPVVG----SVGLIILGAF 189 (329)
Q Consensus 154 ~s~~pv~~~l~~~~~~~e~~~~~~~~----sv~~~~~Gv~ 189 (329)
..+.++.-.+.+.+++||+-+++++. +++++++|.+
T Consensus 228 SQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 228 SQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999998888664 3444444443
No 72
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=94.92 E-value=0.24 Score=38.23 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH-HHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHh
Q 020228 239 GVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF-FLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIA 317 (329)
Q Consensus 239 ~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~ 317 (329)
..++.+.+.......++..+.++..... .+...+..|+++. ......+.+.++.++ ..++...+.++++.++|++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 5 YLFSVLFLLIILLIRGRLRDLFRALRRK---PWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556554433211111 1344555666665 444445778999985 7778899999999999999
Q ss_pred hhcCC
Q 020228 318 IATNF 322 (329)
Q Consensus 318 ~f~~~ 322 (329)
+|+|.
T Consensus 81 ~~~er 85 (113)
T PF13536_consen 81 FFKER 85 (113)
T ss_pred HhcCC
Confidence 99985
No 73
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.31 E-value=0.92 Score=40.04 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
.++..++.-+.|........|-+-+.. + ...=+..-+.++.++...+..... . +...++..+-
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~-g~~g~a~gm~vAaviv~Pig~~~a------g--------~~l~~p~ll~ 210 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRAE--H-GTAGVAVGMLVAALIVLPIGAAQA------G--------PALFSPSLLP 210 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcccC--C-CchHHHHHHHHHHHHHhhhhhhhc------c--------hhhcChHHHH
Confidence 344444555555555444555554311 2 223445556666555554432110 0 0111222233
Q ss_pred HHhHHHHHHHH-HHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhe
Q 020228 123 HTLPLAVAYLL-YMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF 189 (329)
Q Consensus 123 ~~~~~~~~~~~-~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~ 189 (329)
--+.++++.+. -..+...+++..|.+.+.++-++-|.+-++.+.++++|.++..+|.++..++.+.+
T Consensus 211 laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 211 LALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 33334444333 34489999999999999999999999999999999999999999999988877665
No 74
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=93.87 E-value=0.12 Score=45.71 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=60.9
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhe
Q 020228 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF 189 (329)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~ 189 (329)
+++.-+.-+|++..+.+.+-..++|.--++-..+.+.+-.++..+.+.+++++.+++..|.+.++++...+
T Consensus 251 kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v 321 (346)
T KOG4510|consen 251 KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV 321 (346)
T ss_pred cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence 34455677789989999999999999999999999999999999999999999999999988776654433
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.79 E-value=0.0065 Score=52.93 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=127.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccch----hhhhhhhhhheeee
Q 020228 118 LKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVV----GSVGLIILGAFVAG 192 (329)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~----~sv~~~~~Gv~l~~ 192 (329)
.+.+..-+.-|++.+..+.....|.+++.+|-+.-+ ..+..+-+.+++.+.++|..+..+. .+++++++|+.+.+
T Consensus 56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs 135 (288)
T COG4975 56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS 135 (288)
T ss_pred hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence 333444455567888999999999999988876655 4467788899999999999877665 57888999999987
Q ss_pred ecCc--------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCC
Q 020228 193 ARDL--------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPY 264 (329)
Q Consensus 193 ~~~~--------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~ 264 (329)
..|. +.--.|+...+.|.+.+..|.+..|.. +.+.+....-+..-.....+......+|..
T Consensus 136 ~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~~~~~~------- 204 (288)
T COG4975 136 KQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFFKMEKR------- 204 (288)
T ss_pred eeccccccccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhcccccc-------
Confidence 7653 112478888889999999998887655 345555443333322222222222222211
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCcc
Q 020228 265 LLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGL 324 (329)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~ 324 (329)
.+-.. +.-...|+.=...|...+.+.++.+-.|.=....+.-+.+++-|.++++|.+-
T Consensus 205 -~~K~t-~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt 262 (288)
T COG4975 205 -FNKYT-WLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT 262 (288)
T ss_pred -hHHHH-HHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence 11122 23455666666677777777766664443334556677888888888888753
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.08 E-value=2.3 Score=34.18 Aligned_cols=103 Identities=18% Similarity=0.115 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH
Q 020228 203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF 282 (329)
Q Consensus 203 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (329)
.++++++.++-+++.....++.++.+ +++.-.+.+...+...+.......++. +..+ ..+.+ | +....|++|.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~---~~~~p-~-w~~lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLAS---LSSVP-W-WAYLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccch---hccCC-h-HHhccHHHHH
Confidence 56788888999999988888877543 588888888888888777776666553 1111 11111 2 2334899998
Q ss_pred HHHHHHHHHHhccchhHHHHhhchhhHHHH
Q 020228 283 FLNYSIFLNTTLNSAVTQTICGNLKVCFPT 312 (329)
Q Consensus 283 ~~~~~~~~~i~~~sa~t~si~~~~k~i~~~ 312 (329)
..-.+....+.+.++.........-.+...
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s 105 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIAS 105 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 888888889999998887776655554443
No 77
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.42 E-value=1.5 Score=38.02 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhee
Q 020228 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l 190 (329)
.+.+.+..++...+-...++|.+.-+..+.-.+.++++.+++.++++++++...+.+..+++.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344455666677888999999999999999999999999999999999999999999999998765
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=88.93 E-value=3.5 Score=38.53 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH-HHHHHHHHH--HHHHhCChhhhhccCCccchhHHHHHHH
Q 020228 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNG-VICGPLLLL--WTFLRGDLETTINFPYLLSPGFLVVLCF 276 (329)
Q Consensus 200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~--~~~~~ge~~~~~~~~~~~~~~~~~~l~~ 276 (329)
..|+++++++.+|++...+-.|+ . +.-++|..+-.. +++..+... ..+..++..+.. ...++..+..-++
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~---k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~---~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-V---KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYY---SSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-c---CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HhcCHHHHHHHHH
Confidence 57999999999999998888777 3 346677663211 122222211 111122222222 2234555666677
Q ss_pred HHHHHHHHHHHHHHHHhccc-hhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 277 SCILAFFLNYSIFLNTTLNS-AVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~s-a~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+|++=-..|...+..+++.+ +.+..+..-+..+..++++.+++||-
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew 125 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNF 125 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcccc
Confidence 77777778888888888886 45555666677888889999998864
No 79
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.40 E-value=14 Score=33.66 Aligned_cols=139 Identities=9% Similarity=0.020 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-cccccccCCCCCccCCCCCccccHHH
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRR-WKIINFTMGDSLMTSDSSSTFVPLKT 120 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
..|++.+..|.+.=....-..+.++..++.. +..+.+.-.+...+.-....- .|.. .+..+. -+ ...+.
T Consensus 171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~----~~av~F----~~-~hp~~ 240 (327)
T KOG1581|consen 171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHL----LPAVSF----IK-EHPDV 240 (327)
T ss_pred hHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCC----chHHHH----HH-cChhH
Confidence 3566666666654444444455666655544 333333333333333332211 1110 000000 00 13467
Q ss_pred HHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhee
Q 020228 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l 190 (329)
+++++.++.+.++++.+=+..++.-..=+.+++--+-=.+.++++.+.++.+.+..+|.++.+++.|..+
T Consensus 241 ~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 241 AFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 8899999999999999888888775444666666777788899999999999999999999998888765
No 80
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=84.59 E-value=1.9 Score=39.78 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHH-HHHHcccccccCCCCCccCCCCCccccH
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALS--SYNFPCANVITLLQMISSCSFLY-FLRRWKIINFTMGDSLMTSDSSSTFVPL 118 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~--~~~f~~p~~l~~~q~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (329)
..|...+..+......=..+.|.++. ++..+ +..+..++.-++.+.+. +..-. ..++... .. . ....+.
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~---~~~~~~~-~~-~--~~~~~~ 233 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDY---VEGNKFV-GF-L--TAPWFV 233 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhh---hccccee-ee-e--ccccch
Confidence 35677777777777777777888884 44555 55677777777777666 33221 0000000 00 0 000122
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
. .......+++....+...+..+..+++=+++++-...-+++...++++++++.++...++.++.+.|+.+.+.
T Consensus 234 ~-~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 234 T-FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 2 2233334466666667888888999888999998888888888998888888899999999999999988643
No 81
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=84.51 E-value=19 Score=28.83 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHH
Q 020228 49 ISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLA 128 (329)
Q Consensus 49 ~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
+.-+..-.....+|-.+-...+ .|..=++.-+..+.+.+.++....+.+ . .+. .+..|| +.+.=|
T Consensus 7 ~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~-~~~-------~~~~p~----w~~lGG 71 (138)
T PF04657_consen 7 LLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-S-LAS-------LSSVPW----WAYLGG 71 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-c-cch-------hccCCh----HHhccH
Confidence 3334333344445555554443 466677777777777766655433211 0 000 111233 222345
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHh-HHHHHHHHHHHH----HhCcccCccchhhhhhhhhhhee
Q 020228 129 VAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYF----LAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 129 ~~~~~~~~~~n~al~~~~vs~~~il~s-~~pv~~~l~~~~----~~~e~~~~~~~~sv~~~~~Gv~l 190 (329)
++-.....+.+.+...+.++..+.+.- -..+.-++++.+ .-|+++++.++.+++++++|+.+
T Consensus 72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 677777888999999999888777644 455566677764 34677999999999999999864
No 82
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=84.20 E-value=0.31 Score=43.38 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred cchhHHHHHHhHHHHHHHHHHHH-HhCcc-cCccchhhhhhhhhhheeeeecCc--ccchhHHHHHHHHHHHHHHHHHHH
Q 020228 145 VNVPMYTTLRRTTVAFTMIMEYF-LAGQK-YTPPVVGSVGLIILGAFVAGARDL--SFDFFGYAVVFLANITTAIYLATI 220 (329)
Q Consensus 145 ~~vs~~~il~s~~pv~~~l~~~~-~~~e~-~~~~~~~sv~~~~~Gv~l~~~~~~--~~~~~G~~~~l~s~~~~a~~~i~~ 220 (329)
.+-+..+++.|...+.++++-.+ ++||| ..+.-.+|++++++-..+...-.. +.-+.|+++.++.....-.-+.+.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666555544443 33444 677788888887766655433221 223578776666655555555554
Q ss_pred HHhhcCCCCCchhHHHHHHHH
Q 020228 221 ARIGKSSGLNSFGLMWCNGVI 241 (329)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~~ 241 (329)
. ++++++.+-|+++.+...+
T Consensus 127 ~-lLr~~GAs~WtiLaFcLAF 146 (381)
T PF05297_consen 127 W-LLRELGASFWTILAFCLAF 146 (381)
T ss_dssp ---------------------
T ss_pred H-HHHHhhhHHHHHHHHHHHH
Confidence 3 7788888989887665543
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=80.83 E-value=40 Score=29.86 Aligned_cols=129 Identities=9% Similarity=0.002 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-cccccccCCCCCccCCCCCccccHHH
Q 020228 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRR-WKIINFTMGDSLMTSDSSSTFVPLKT 120 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
..|++++++...+|......++.++-+.+ .+...--.|+-...++...... ....+ +..++ .- ++.
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~-~~~~~-------g~---f~G 179 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGS-AISES-------GF---FHG 179 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhccccc-ccccC-------Cc---hhh
Confidence 45777788888888877888888887554 3455555665544444433322 21111 00000 00 111
Q ss_pred HHH-HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhh
Q 020228 121 LMH-TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGL 183 (329)
Q Consensus 121 ~~~-~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~ 183 (329)
+-. .+..-+..++.-..-...++|.+-=.-....+...+.+.+++.++++.+++..-.++..+
T Consensus 180 ~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 180 YSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 111 222233445454556667888877788888999999999999999999999887766543
No 84
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=78.06 E-value=28 Score=30.46 Aligned_cols=128 Identities=10% Similarity=-0.024 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHH
Q 020228 49 ISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLA 128 (329)
Q Consensus 49 ~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
...+.++...++..|-...-.+|.. ..-.++..+.+...+..+..+. .+-++.++ ....+...+..++.-|
T Consensus 161 ~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~----edws~~n~----annl~~d~l~am~ISg 231 (309)
T COG5070 161 FTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLF----EDWSPGNL----ANNLSVDSLMAMFISG 231 (309)
T ss_pred ehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHh----ccCCcchh----hcCCChHHHHHHHHHH
Confidence 3334444444444444433223332 2244555555655555544321 11111111 1123334456667777
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhh
Q 020228 129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLII 185 (329)
Q Consensus 129 ~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~ 185 (329)
++..+..+++-++++..+-.++.+..++.-....+.+.+++++..+...+.++++..
T Consensus 232 l~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGf 288 (309)
T COG5070 232 LCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGF 288 (309)
T ss_pred HHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHH
Confidence 888888889999999999999999999998888888888888888887777766544
No 85
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=78.04 E-value=48 Score=30.89 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCCCCchhHHHHHHHHHHHHHHHHHHHhC-C-hhhhh---ccCCccchhHHHHHHHH
Q 020228 205 VVFLANITTAIYLATIARIGK--SSGLNSFGLMWCNGVICGPLLLLWTFLRG-D-LETTI---NFPYLLSPGFLVVLCFS 277 (329)
Q Consensus 205 ~~l~s~~~~a~~~i~~~~~~~--~~~~~~~~l~~~~~~~~~~~l~~~~~~~g-e-~~~~~---~~~~~~~~~~~~~l~~~ 277 (329)
..++..+-.+.+....|...+ +.++.+....+.+=++=.++.....+.+. . +.... +..-+.++...+.+.+-
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP 98 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP 98 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence 333444444445555555433 23466666666655554444444333221 0 01100 00111223234566667
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC
Q 020228 278 CILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN 321 (329)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~ 321 (329)
+++-...|...+....+.+|.++++...+|...+.+++++++++
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~r 142 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRR 142 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhh
Confidence 77888888877899999999999999999999999999999864
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.38 E-value=15 Score=33.59 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228 129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 129 ~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
++..+-.+++..+.+..|+-++++.....-..+.+...++++++.++....++.+.+.|-.+.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y 298 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY 298 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence 444455566666666666666666665555566666666666666666666666655555553
No 87
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=73.54 E-value=39 Score=25.90 Aligned_cols=35 Identities=9% Similarity=-0.115 Sum_probs=28.2
Q ss_pred HHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 288 IFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 288 ~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
...++++.+.......-.+..+.+.++|+++|||.
T Consensus 54 ~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ 88 (111)
T PRK15051 54 WLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEP 88 (111)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34577888877777777789999999999999986
No 88
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=71.68 E-value=19 Score=33.85 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc
Q 020228 131 YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL 196 (329)
Q Consensus 131 ~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~ 196 (329)
-.+.=+++-.|.-.++--..++.-+.+.+..++.+.++.++++++..+++.+.+++|.+.+...+.
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 455667888898888888899999999999999999999999999999999999999999876544
No 89
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=66.23 E-value=20 Score=33.30 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=69.3
Q ss_pred cHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCc-------ccCccchhhhhhhhhhh
Q 020228 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQ-------KYTPPVVGSVGLIILGA 188 (329)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e-------~~~~~~~~sv~~~~~Gv 188 (329)
|.+.+......|++..+.-...-.+.+|+.+|.-+-+ .-++.++=.++-.++.++ +-....++++++.++|+
T Consensus 69 ~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI 148 (344)
T PF06379_consen 69 PASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI 148 (344)
T ss_pred ChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence 3445666777788888888888899999877755443 333333333443444332 23456778999999999
Q ss_pred eeeeec----C-------cccc-hhHHHHHHHHHHHHHHHHHHHH
Q 020228 189 FVAGAR----D-------LSFD-FFGYAVVFLANITTAIYLATIA 221 (329)
Q Consensus 189 ~l~~~~----~-------~~~~-~~G~~~~l~s~~~~a~~~i~~~ 221 (329)
++.... | .++| ..|++.+++|.+.+|..+.-.+
T Consensus 149 ai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 149 AICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred HHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 885321 1 1222 4899999999999999876443
No 90
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=64.40 E-value=10 Score=28.79 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=50.7
Q ss_pred HHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
++...|+.+=.+.+ .+.+.-++..|++.+.-+ .+++-.|+.+.+..+..|....+.+++..++++|+.+.
T Consensus 53 w~Y~iPFllNqcgS-aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGS-ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 34555655544333 456677777777766544 56788899999988777778888999999999998764
No 91
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=62.25 E-value=32 Score=31.50 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHH
Q 020228 199 DFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSC 278 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~ 278 (329)
...|+.++++++++.+.-.+++|+-..+.+.++..-- + . ..++..++..|.-++. .
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-------------------~--~--~~~~l~~~~W~~G~~~-~ 60 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-------------------S--G--GRSYLRRPLWWIGLLL-M 60 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------------------c--h--hhHHHhhHHHHHHHHH-H
Confidence 4689999999999999999999887543221111000 0 0 0001111211222221 1
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 279 ILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 279 ~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
..|-. ..+.+....++...+..+.+.-+...+++-+++||.
T Consensus 61 ~~g~~---~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~ 101 (300)
T PF05653_consen 61 VLGEI---LNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEK 101 (300)
T ss_pred hcchH---HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhccc
Confidence 22222 233456666667777777777777777777776654
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=61.23 E-value=7.1 Score=34.25 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=49.5
Q ss_pred HHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhee
Q 020228 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l 190 (329)
+.++..++++.++.+.+-+.-..+-..=+-.++-.+--.|+.+.+.++++..++.++|++..+++.|...
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 4555666666666666555555443322333444456679999999999999999999999999888765
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.61 E-value=1e+02 Score=25.20 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHH
Q 020228 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCI 279 (329)
Q Consensus 200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~ 279 (329)
...++.++++.++...+.-...++.+..+ +|.--.+.+...+...+..+...... .+.+.... ..| | +....|+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~-~~p--w-W~~~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVA-SAP--W-WAWIGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhcc-CCc--h-HHHHccc
Confidence 45677888899999999888888877544 56666667777776666665544222 11111111 111 3 3345668
Q ss_pred HHHHHHHHHHHHHhccchhHHHHhhchh
Q 020228 280 LAFFLNYSIFLNTTLNSAVTQTICGNLK 307 (329)
Q Consensus 280 ~~~~~~~~~~~~i~~~sa~t~si~~~~k 307 (329)
+|.+.-++......+.++.++..+...-
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~g 105 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAG 105 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHH
Confidence 8877777777777777766665544333
No 94
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=50.54 E-value=1.2e+02 Score=23.85 Aligned_cols=97 Identities=8% Similarity=-0.032 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHH
Q 020228 201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCIL 280 (329)
Q Consensus 201 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (329)
.|+++.+.+.++.+.-+++.|+=.++.+. .+.... . ...+ ... .+| ...+..|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~--~~~~~~-~---~~~~--~~~--------------~~p---~~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL--LSHAWD-F---IAAL--LAF--------------GLA---LRAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC--ccchhH-H---HHHH--HHH--------------hcc---HHHHHHHHH
Confidence 48899999999999999999987764332 221100 0 0000 000 011 112334444
Q ss_pred HHHHHHH-HHHHHhccchhHHHHhhchhhHHHHHHHHh--hhcCC
Q 020228 281 AFFLNYS-IFLNTTLNSAVTQTICGNLKVCFPTTLHIA--IATNF 322 (329)
Q Consensus 281 ~~~~~~~-~~~~i~~~sa~t~si~~~~k~i~~~~~s~~--~f~~~ 322 (329)
.+...+. ...++++.+.......-....+...+.++. +|||.
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ 101 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNET 101 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4443333 356788888777776666666666666764 67765
No 95
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=47.87 E-value=2e+02 Score=25.36 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh
Q 020228 199 DFFGYAVVFLANITTAIYLATIARIG 224 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~a~~~i~~~~~~ 224 (329)
...|+....++.+....|.+..+++-
T Consensus 100 a~l~ya~~~la~~~a~lyL~~~~~lk 125 (243)
T TIGR03144 100 MILSYAALLVGSLLSIAYLLKTRKQN 125 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788888888888888877665553
No 96
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=44.39 E-value=1.4e+02 Score=22.75 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=41.3
Q ss_pred HHHHHHHhhhhccccchhHHHHHH-hHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228 131 YLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 131 ~~~~~~~~n~al~~~~vs~~~il~-s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
|+.....+-.+.+.-+.+.--+++ ..+....+.++.+++||++++....+.+.++.++.+.
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 555555555666655554443442 3444455677888999999999999999988777653
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.62 E-value=2.1e+02 Score=23.35 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHh
Q 020228 46 NAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTL 125 (329)
Q Consensus 46 l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (329)
+..+.-+.+...-.-+|-.+-... ..|..=.+.-+.+..+++.++... +.+.++.. . ....|| +.+
T Consensus 8 l~~i~aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l~-~~~~~~~a--~-----~~~~pw----W~~ 73 (150)
T COG3238 8 LFAILAGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLLI-KQGHPGLA--A-----VASAPW----WAW 73 (150)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHH-hcCCCchh--h-----ccCCch----HHH
Confidence 334555555555555676666544 457777777777777766665544 22222111 0 111233 112
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHH-HHhHHHHHHHHHHHHHh----CcccCccchhhhhhhhhhheee
Q 020228 126 PLAVAYLLYMVVSVESVRGVNVPMYTT-LRRTTVAFTMIMEYFLA----GQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 126 ~~~~~~~~~~~~~n~al~~~~vs~~~i-l~s~~pv~~~l~~~~~~----~e~~~~~~~~sv~~~~~Gv~l~ 191 (329)
.-|++-+.....+......+.+...+. ..+-..+.-++++.+=. +++++..++.+++++++|+.+.
T Consensus 74 ~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 74 IGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 223444444445555556665555444 46666777777776544 3679999999999999996554
No 98
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.98 E-value=1.3e+02 Score=27.23 Aligned_cols=114 Identities=8% Similarity=-0.028 Sum_probs=69.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHH
Q 020228 72 PCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYT 151 (329)
Q Consensus 72 ~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~ 151 (329)
+.-+-++++..+.+.++...+.-... +++. + .+.+...+++.|..+..-|++.....+....=++.++.=++.
T Consensus 213 ~~iw~lt~ynnv~a~lLflpll~lng-e~~~-----v-~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThn 285 (347)
T KOG1442|consen 213 DCIWRLTAYNNVNALLLFLPLLILNG-EFQA-----V-VGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHN 285 (347)
T ss_pred CeehhhHHHHHHHHHHHHHHHHHHcc-hHHH-----H-cCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceee
Confidence 34567888888888776665543321 1110 0 000111123334444444455444444444556666666777
Q ss_pred HHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228 152 TLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 152 il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~ 192 (329)
+-....-..-.+++..+++|.-+...|-+.++++.|..+.+
T Consensus 286 ISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 286 ISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred ecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 76666667777888999999999999999999888876643
No 99
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=36.59 E-value=3.4e+02 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=11.7
Q ss_pred CCCCCchhhhhccccc-ccccccch
Q 020228 16 PARGDEGEKERLLKGD-EKLFRGSA 39 (329)
Q Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~ 39 (329)
+|...|++..-.++++ +|.||..+
T Consensus 518 ~~~~~~~~~ry~~kpEI~H~Fr~~e 542 (636)
T PF05817_consen 518 PPPKYEKPVRYGPKPEIHHIFREPE 542 (636)
T ss_pred CCCCccccccCCCCCceeeecCCCC
Confidence 3333443333333433 56888765
No 100
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=33.36 E-value=1.3e+02 Score=27.18 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=40.5
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcc
Q 020228 146 NVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS 197 (329)
Q Consensus 146 ~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~ 197 (329)
.+..+..+-..--..|.+++++++.|.++.....+..+++.|+.+-.+++.+
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 4444444444555678899999999999999999999999999997666643
No 101
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=32.93 E-value=3e+02 Score=24.81 Aligned_cols=69 Identities=16% Similarity=0.098 Sum_probs=31.0
Q ss_pred hccccc-ccccccchhhhhhHHHHHHHHHHHHH----HHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHHHHHHH
Q 020228 26 RLLKGD-EKLFRGSAMTRRGANAAISYMACAVL----LVMFNKAALSSYNFPC-ANVITLLQMISSCSFLYFLRR 94 (329)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~s~~----~~~~nK~ll~~~~f~~-p~~l~~~q~~~~~~~l~~~~~ 94 (329)
-+|+++ .|+||.++......++.++-+.+-+. +++-.|...+...+|. |..-+.+|...+.+.....+.
T Consensus 178 fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~pss~~s~~~Fh~gi~g~~vL~f~y 252 (287)
T KOG2447|consen 178 FGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFPSSPTSTLGFHAGIAGILVLFFVY 252 (287)
T ss_pred cCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCchhhhhhhHHHHHHHHHHHH
Confidence 344444 56787766333333333333322221 2223444444455654 324555565555544444443
No 102
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=31.01 E-value=22 Score=31.59 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 020228 75 NVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLR 154 (329)
Q Consensus 75 ~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~ 154 (329)
+....-|..-..+...++...+..+ +.++..++. ...|+..+....+...|-+...+++.-.+.
T Consensus 179 ~saiLPqAiGMv~~ali~~~~~~~~---------------~~~K~t~~n-ii~G~~Wa~GNl~ml~a~~~~GvAt~FSlS 242 (288)
T COG4975 179 LSAILPQAIGMVIGALILGFFKMEK---------------RFNKYTWLN-IIPGLIWAIGNLFMLLAAQKVGVATSFSLS 242 (288)
T ss_pred hhhhhHHHHHHHHHHHHHhhccccc---------------chHHHHHHH-HhhHHHHHhhHHHHHHhhhhhceeeeeeHh
Confidence 3455556665555555555443211 112233333 445777777777777777888888888888
Q ss_pred hHHHHHHHHHHHHHhCcccCccchhhhh
Q 020228 155 RTTVAFTMIMEYFLAGQKYTPPVVGSVG 182 (329)
Q Consensus 155 s~~pv~~~l~~~~~~~e~~~~~~~~sv~ 182 (329)
.+..+.-.+.+.+++|||-+++++..++
T Consensus 243 QlgViisTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 243 QLGVIISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred hheeeeeecceEEEEeccCchhhhhhhh
Confidence 8888888899999999999988875443
No 103
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=29.45 E-value=1.9e+02 Score=22.03 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHhccc-hhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 290 LNTTLNS-AVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 290 ~~i~~~s-a~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
+++|+.+ .+.+++-+-.-.+.+.+.|+++|||.
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~ 82 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGES 82 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4566665 46678888888888999999999886
No 104
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=29.14 E-value=1.9e+02 Score=22.10 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=17.7
Q ss_pred HHhccc-hhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228 291 NTTLNS-AVTQTICGNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 291 ~i~~~s-a~t~si~~~~k~i~~~~~s~~~f~~~ 322 (329)
++|+.+ ...+++..-+..+.+++.|+++|||.
T Consensus 50 al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~ 82 (110)
T PRK09541 50 TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR 82 (110)
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444443 23444545556666666666666664
No 105
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=28.81 E-value=1.6e+02 Score=19.76 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=22.9
Q ss_pred hhhhhhhhhheeeeecCcccchhHHHHHHHHHHHHHHH
Q 020228 179 GSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIY 216 (329)
Q Consensus 179 ~sv~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~ 216 (329)
.+++.++.|+.+...++...+....+.+..-.+....+
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~ 39 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQ 39 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888877777766655555444443333333
No 106
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=27.43 E-value=4.2e+02 Score=23.16 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHH---HHHHhCcccCccchhhhhhhhhhh
Q 020228 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIM---EYFLAGQKYTPPVVGSVGLIILGA 188 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~---~~~~~~e~~~~~~~~sv~~~~~Gv 188 (329)
+--..|.=+|+....+.-.......+++...+-+....+|.... +.++.+.+.+....++-.+++.|.
T Consensus 102 lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p~~LG~~Mi~~Gl 172 (224)
T PF09930_consen 102 LALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILLSSFIFRRLKKPYPIILGNFMIFLGL 172 (224)
T ss_pred hhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 44556666777777766667777788888877777666555433 333333344444445444444444
No 107
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=22.11 E-value=6.6e+02 Score=23.55 Aligned_cols=42 Identities=10% Similarity=0.260 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH-HHHHHHH
Q 020228 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCN-GVICGPL 245 (329)
Q Consensus 200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 245 (329)
..|+++..+++++++.+-+=.||. |.=++|..+.. .+++...
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv----k~WsWEs~Wlv~gi~swli 48 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV----KGWSWESYWLVQGIFSWLI 48 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc----CCccHHHHHHHHHHHHHHH
Confidence 579999999999999988877776 33567766543 3444333
Done!