Query 020228
Match_columns 329
No_of_seqs 170 out of 1627
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.1 4.5E-06 1.5E-10 63.7 5.9 70 126-195 35-105 (110)
2 2i68_A Protein EMRE; transmemb 98.0 5.2E-06 1.8E-10 65.7 4.3 66 128-193 37-103 (137)
3 3b5d_A Multidrug transporter E 80.9 14 0.00049 27.1 10.2 35 288-322 47-82 (110)
4 2i68_A Protein EMRE; transmemb 80.7 2.2 7.5E-05 33.1 4.8 37 286-322 45-82 (137)
5 4dve_A Biotin transporter BIOY 19.7 3.6E+02 0.012 21.9 8.6 99 119-224 15-121 (198)
6 3o7q_A L-fucose-proton symport 7.0 1.1E+03 0.038 20.2 11.9 14 59-72 279-293 (438)
7 1lqb_D HIF-1 alpha, hypoxia-in 4.7 2.4E+02 0.0082 15.7 0.7 11 7-17 14-24 (34)
8 1fll_X B-cell surface antigen 3.0 4.8E+02 0.017 13.5 0.9 11 16-26 14-24 (26)
9 3l1l_A Arginine/agmatine antip 2.9 2.2E+03 0.077 18.4 7.2 7 49-55 237-243 (445)
10 2vov_A MOPE, surface-associate 2.9 5.6E+02 0.019 20.7 1.7 18 5-22 72-89 (336)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.10 E-value=4.5e-06 Score=63.66 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC
Q 020228 126 PLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD 195 (329)
Q Consensus 126 ~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~ 195 (329)
...+++.+..++...++++.|++.+..+ ..+.|+++++.+.+++||++++.++.++.+++.|+.+....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3345678888899999999999999888 899999999999999999999999999999999998865443
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.97 E-value=5.2e-06 Score=65.70 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 128 ~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~ 193 (329)
.+++.+..++.+.+++++|++.+..+ ..+.|++++++++++++|++++.++++++++++|+++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45678888999999999999988777 9999999999999999999999999999999999998644
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=80.93 E-value=14 Score=27.08 Aligned_cols=35 Identities=3% Similarity=-0.085 Sum_probs=28.1
Q ss_pred HHHHHhccchhHHHHh-hchhhHHHHHHHHhhhcCC
Q 020228 288 IFLNTTLNSAVTQTIC-GNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 288 ~~~~i~~~sa~t~si~-~~~k~i~~~~~s~~~f~~~ 322 (329)
...++|+.+......+ ..+.++.+.++|+++|||.
T Consensus 47 ~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~ 82 (110)
T 3b5d_A 47 LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR 82 (110)
T ss_pred HHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 3457888887777666 7889999999999999886
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=80.71 E-value=2.2 Score=33.13 Aligned_cols=37 Identities=3% Similarity=-0.062 Sum_probs=25.5
Q ss_pred HHHHHHHhccchhHHHHh-hchhhHHHHHHHHhhhcCC
Q 020228 286 YSIFLNTTLNSAVTQTIC-GNLKVCFPTTLHIAIATNF 322 (329)
Q Consensus 286 ~~~~~~i~~~sa~t~si~-~~~k~i~~~~~s~~~f~~~ 322 (329)
++...++++.++.....+ ..+.++.++++|+++|||.
T Consensus 45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR 82 (137)
T ss_dssp HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344678999998877777 8999999999999999986
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=19.75 E-value=3.6e+02 Score=21.86 Aligned_cols=99 Identities=13% Similarity=0.042 Sum_probs=56.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhh---ccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec-
Q 020228 119 KTLMHTLPLAVAYLLYMVVSVES---VRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR- 194 (329)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~n~a---l~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~- 194 (329)
+..|++...+++-++...+...+ +-..|+| -.+....+++.+.++..|+=......-+++..+|.=+++.+
T Consensus 15 ~k~r~l~~~alfaAliavla~i~~Ipip~~pVP-----iTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~ 89 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVP-----IILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGN 89 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCC-----BCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcC-----ccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCC
Confidence 45677777777776666666543 3333444 23556677777777666654445555566677777555433
Q ss_pred -Cc---ccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 020228 195 -DL---SFDFFGYAVVFLANITTAIYLATIARIG 224 (329)
Q Consensus 195 -~~---~~~~~G~~~~l~s~~~~a~~~i~~~~~~ 224 (329)
.. -....|++++..-+..-+-+ +.+|..
T Consensus 90 gG~~~l~gPTgGYLiGF~~aA~v~G~--l~~~~~ 121 (198)
T 4dve_A 90 GGAASFLGPSGGYRIAWLFTPFLIGF--FLKKLK 121 (198)
T ss_dssp CCSGGGGSTTHHHHHHHHHHHHHHHH--HHHHTT
T ss_pred CchhHHhcchhHHHHHHHHHHHHHHH--HHHHcc
Confidence 22 12457888876554444333 344543
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=6.97 E-value=1.1e+03 Score=20.16 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=7.3
Q ss_pred HHHHHH-HhhcCCCC
Q 020228 59 VMFNKA-ALSSYNFP 72 (329)
Q Consensus 59 ~~~nK~-ll~~~~f~ 72 (329)
.....| +-+.++++
T Consensus 279 ~~~~~~~~~~~~g~~ 293 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMT 293 (438)
T ss_dssp HHHHHHHHHHSTTCC
T ss_pred HHHHHHhhhccCCcc
Confidence 455566 44444655
No 7
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=4.71 E-value=2.4e+02 Score=15.68 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=7.2
Q ss_pred CCCCccccCCC
Q 020228 7 KSPMLPVSEPA 17 (329)
Q Consensus 7 ~~~~~~~~~~~ 17 (329)
-+|-|||++|=
T Consensus 14 LAPYIpMddDF 24 (34)
T 1lqb_D 14 LAPYIPMDDDF 24 (34)
T ss_pred hcCccccCccc
Confidence 36778877553
No 8
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=2.95 E-value=4.8e+02 Score=13.51 Aligned_cols=11 Identities=9% Similarity=0.012 Sum_probs=4.6
Q ss_pred CCCCCchhhhh
Q 020228 16 PARGDEGEKER 26 (329)
Q Consensus 16 ~~~~~~~~~~~ 26 (329)
-|..||+.||.
T Consensus 14 qPVaQEdGKeS 24 (26)
T 1fll_X 14 QPVTQEDGXXX 24 (26)
T ss_dssp SSCCCCCC---
T ss_pred ccchhhccccc
Confidence 44556666553
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=2.92 E-value=2.2e+03 Score=18.41 Aligned_cols=7 Identities=14% Similarity=0.577 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 020228 49 ISYMACA 55 (329)
Q Consensus 49 ~~~~~~s 55 (329)
++|....
T Consensus 237 ~~y~~~~ 243 (445)
T 3l1l_A 237 VCYVLST 243 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 10
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized tryptophan, methanotroph bacterium, kunurenine, copper binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB: 2vox_A* 2vow_A
Probab=2.88 E-value=5.6e+02 Score=20.66 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.2
Q ss_pred CCCCCCccccCCCCCCch
Q 020228 5 SSKSPMLPVSEPARGDEG 22 (329)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (329)
|...|+-|+++||||-++
T Consensus 72 sppgpgtpiygpprdfsg 89 (336)
T 2vov_A 72 SPPGPGTPIYGPPRDFSG 89 (336)
T ss_dssp CCSSSSCCCBCSCCBCTT
T ss_pred CCCCCCCcCcCCCccccc
Confidence 556789999999998443
Done!