Query 020228
Match_columns 329
No_of_seqs 170 out of 1627
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 13:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020228.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020228hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 12.0 88 0.0064 14.9 2.9 17 201-217 3-19 (27)
2 d2heyr2 g.24.1.1 (R:143-166) T 6.6 83 0.0061 14.7 0.9 7 2-8 16-22 (26)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.2 3.9E+02 0.028 20.4 5.5 62 123-188 4-65 (248)
4 d2h5na1 a.287.1.2 (A:1-132) Hy 2.9 3.1E+02 0.022 17.6 1.8 28 184-212 89-116 (132)
5 d2c7na1 g.39.1.15 (A:18-73) Ra 2.9 1.7E+02 0.012 17.0 0.4 11 318-328 8-18 (56)
6 d1x4la1 g.39.1.3 (A:8-36) Four 2.6 2E+02 0.014 14.2 0.4 10 319-328 19-28 (29)
7 d2d8za1 g.39.1.3 (A:8-32) Four 2.5 2.1E+02 0.015 13.6 0.4 10 319-328 15-24 (26)
8 d1x68a1 g.39.1.3 (A:8-36) Four 2.3 2E+02 0.014 14.2 0.1 10 319-328 19-28 (29)
9 d1uptb_ a.193.1.1 (B:) Golgi a 2.0 1.9E+02 0.014 16.9 -0.2 20 162-181 11-30 (58)
10 d2cura2 g.39.1.3 (A:8-32) Four 1.7 2.5E+02 0.018 13.3 -0.0 10 319-328 15-24 (26)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.02 E-value=88 Score=14.93 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 020228 201 FGYAVVFLANITTAIYL 217 (329)
Q Consensus 201 ~G~~~~l~s~~~~a~~~ 217 (329)
.|.+...++.+++|.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57788888888888774
No 2
>d2heyr2 g.24.1.1 (R:143-166) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.64 E-value=83 Score=14.73 Aligned_cols=7 Identities=71% Similarity=0.686 Sum_probs=4.2
Q ss_pred CCCCCCC
Q 020228 2 ASNSSKS 8 (329)
Q Consensus 2 ~~~~~~~ 8 (329)
|||||.+
T Consensus 16 asnssda 22 (26)
T d2heyr2 16 ASNSSDA 22 (26)
T ss_dssp CCSSSCC
T ss_pred cCCCccc
Confidence 5677653
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.24 E-value=3.9e+02 Score=20.41 Aligned_cols=62 Identities=18% Similarity=0.000 Sum_probs=39.4
Q ss_pred HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhh
Q 020228 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGA 188 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv 188 (329)
++..++++.++..+.-...+..-+..... ...+.+.++.++++.+|.-+.|++.=.+++..+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 56667777777666555555555554433 445567778888888887777776544444333
No 4
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.91 E-value=3.1e+02 Score=17.56 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=19.6
Q ss_pred hhhhheeeeecCcccchhHHHHHHHHHHH
Q 020228 184 IILGAFVAGARDLSFDFFGYAVVFLANIT 212 (329)
Q Consensus 184 ~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 212 (329)
.-.|+++++.+|.+.+- =.+|.+++.+|
T Consensus 89 sylgvimasdgdiddne-lalwtlistlc 116 (132)
T d2h5na1 89 SYLGVIMASDGDIDDNE-LALWTLISTLC 116 (132)
T ss_dssp HHHHHHSCBTTBCCHHH-HHHHHHHHHHH
T ss_pred HHhhheeccCCCCCccH-hHHHHHHHHHh
Confidence 45688888888877663 33677777766
No 5
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.90 E-value=1.7e+02 Score=17.05 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=8.4
Q ss_pred hhcCCcccccc
Q 020228 318 IATNFGLHTYC 328 (329)
Q Consensus 318 ~f~~~~~~~~~ 328 (329)
|||++.++.||
T Consensus 8 FyG~~~~~g~C 18 (56)
T d2c7na1 8 YYGNPAWQGFC 18 (56)
T ss_dssp SCCCGGGTTCC
T ss_pred CCCCcccCCcc
Confidence 57888887777
No 6
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.59 E-value=2e+02 Score=14.22 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=5.2
Q ss_pred hcCCcccccc
Q 020228 319 ATNFGLHTYC 328 (329)
Q Consensus 319 f~~~~~~~~~ 328 (329)
|.|..||+=|
T Consensus 19 FE~R~WH~~C 28 (29)
T d1x4la1 19 FEERQWHNDC 28 (29)
T ss_dssp CSSCEECTTT
T ss_pred eecccccccC
Confidence 4555555544
No 7
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.52 E-value=2.1e+02 Score=13.65 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=5.3
Q ss_pred hcCCcccccc
Q 020228 319 ATNFGLHTYC 328 (329)
Q Consensus 319 f~~~~~~~~~ 328 (329)
+.|..||.=|
T Consensus 15 Y~~~PWH~eC 24 (26)
T d2d8za1 15 YREQPWHKEC 24 (26)
T ss_dssp SSSSEEETTT
T ss_pred ecCCcchhhh
Confidence 4555566544
No 8
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.28 E-value=2e+02 Score=14.17 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.1
Q ss_pred hcCCcccccc
Q 020228 319 ATNFGLHTYC 328 (329)
Q Consensus 319 f~~~~~~~~~ 328 (329)
|.|..||+=|
T Consensus 19 FedR~WH~~C 28 (29)
T d1x68a1 19 FQDSQWHSEC 28 (29)
T ss_dssp ETTEEEEGGG
T ss_pred eehhhccccc
Confidence 4555555544
No 9
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.01 E-value=1.9e+02 Score=16.88 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=11.3
Q ss_pred HHHHHHHhCcccCccchhhh
Q 020228 162 MIMEYFLAGQKYTPPVVGSV 181 (329)
Q Consensus 162 ~l~~~~~~~e~~~~~~~~sv 181 (329)
+++.|..++|..+..++++.
T Consensus 11 vLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHH
Confidence 35566666666555555444
No 10
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.72 E-value=2.5e+02 Score=13.32 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred hcCCcccccc
Q 020228 319 ATNFGLHTYC 328 (329)
Q Consensus 319 f~~~~~~~~~ 328 (329)
+.|..||.=|
T Consensus 15 Y~~qPWH~eC 24 (26)
T d2cura2 15 YQDQPWHADC 24 (26)
T ss_dssp ETTEEECTTT
T ss_pred ecCCcchhhh
Done!