Query 020229
Match_columns 329
No_of_seqs 172 out of 1463
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03312 CIMS_N_terminal_like C 100.0 8.2E-76 1.8E-80 556.9 35.1 322 2-329 1-322 (360)
2 PLN02475 5-methyltetrahydropte 100.0 1.3E-71 2.8E-76 566.8 35.0 327 1-329 1-330 (766)
3 PRK05222 5-methyltetrahydropte 100.0 8.9E-71 1.9E-75 563.5 33.7 322 1-329 2-323 (758)
4 PF08267 Meth_synt_1: Cobalami 100.0 3.5E-70 7.7E-75 503.6 28.8 309 2-317 1-310 (310)
5 TIGR01371 met_syn_B12ind 5-met 100.0 2.5E-68 5.5E-73 544.9 34.9 317 6-329 1-317 (750)
6 PRK08575 5-methyltetrahydropte 100.0 2.8E-62 6E-67 459.5 31.9 288 1-329 3-300 (326)
7 PRK09121 5-methyltetrahydropte 100.0 5.1E-61 1.1E-65 452.4 29.9 287 1-329 3-311 (339)
8 KOG2263 Methionine synthase II 100.0 1.6E-60 3.5E-65 443.8 27.5 327 1-329 2-330 (765)
9 PRK06520 5-methyltetrahydropte 100.0 9.3E-59 2E-63 441.5 27.9 297 1-329 8-338 (368)
10 PRK06233 hypothetical protein; 100.0 2.3E-58 5E-63 439.6 27.6 298 2-329 10-341 (372)
11 PRK05222 5-methyltetrahydropte 100.0 1.3E-56 2.8E-61 459.2 32.1 294 1-329 428-729 (758)
12 PLN02475 5-methyltetrahydropte 100.0 1.7E-56 3.7E-61 456.0 32.5 295 1-329 433-735 (766)
13 COG0620 MetE Methionine syntha 100.0 3.7E-55 8.1E-60 408.3 28.0 294 1-329 5-304 (330)
14 TIGR01371 met_syn_B12ind 5-met 100.0 1.3E-54 2.9E-59 443.9 31.8 295 1-329 422-724 (750)
15 PRK04326 methionine synthase; 100.0 2.4E-54 5.2E-59 407.8 31.2 288 1-329 9-299 (330)
16 PRK01207 methionine synthase; 100.0 1.3E-53 2.8E-58 397.2 30.5 285 1-329 4-316 (343)
17 PF01717 Meth_synt_2: Cobalami 100.0 1.2E-53 2.6E-58 402.0 24.2 292 1-329 1-302 (324)
18 cd03311 CIMS_C_terminal_like C 100.0 3.8E-53 8.3E-58 400.0 22.4 291 2-329 1-310 (332)
19 PRK00957 methionine synthase; 100.0 6.1E-47 1.3E-51 353.5 27.4 272 1-329 2-281 (305)
20 cd03310 CIMS_like CIMS - Cobal 100.0 1.1E-43 2.3E-48 334.0 23.9 284 3-329 2-299 (321)
21 KOG2263 Methionine synthase II 100.0 2.2E-40 4.7E-45 309.3 21.1 294 2-329 434-735 (765)
22 PRK06052 5-methyltetrahydropte 100.0 1.3E-38 2.8E-43 292.2 24.8 267 2-329 5-316 (344)
23 PRK06438 hypothetical protein; 100.0 2.7E-38 5.9E-43 284.6 22.5 260 1-329 2-271 (292)
24 cd00465 URO-D_CIMS_like The UR 99.9 8E-25 1.7E-29 204.4 16.4 244 40-329 30-285 (306)
25 cd03465 URO-D_like The URO-D _ 99.8 7E-18 1.5E-22 159.2 14.7 187 137-329 111-311 (330)
26 PRK06252 methylcobalamin:coenz 99.7 6.3E-17 1.4E-21 153.4 15.4 184 136-329 122-316 (339)
27 TIGR01463 mtaA_cmuA methyltran 99.7 5.4E-17 1.2E-21 153.9 14.8 186 135-329 121-318 (340)
28 cd03307 Mta_CmuA_like MtaA_Cmu 99.7 1.3E-15 2.8E-20 143.7 14.8 184 136-329 113-307 (326)
29 PLN02433 uroporphyrinogen deca 99.7 2.3E-15 4.9E-20 143.1 15.9 185 135-329 114-317 (345)
30 PRK00115 hemE uroporphyrinogen 99.7 1.9E-15 4.1E-20 143.7 15.3 187 135-329 121-324 (346)
31 TIGR01464 hemE uroporphyrinoge 99.6 5.1E-15 1.1E-19 140.4 14.5 186 135-329 115-319 (338)
32 cd00717 URO-D Uroporphyrinogen 99.6 9.2E-15 2E-19 138.4 15.2 186 136-329 113-316 (335)
33 PF01208 URO-D: Uroporphyrinog 99.5 2.6E-14 5.6E-19 135.7 11.2 185 137-329 122-323 (343)
34 cd03309 CmuC_like CmuC_like. P 99.5 3.8E-13 8.3E-18 126.2 13.3 172 152-329 116-302 (321)
35 cd03308 CmuA_CmuC_like CmuA_Cm 99.4 1.8E-12 3.8E-17 124.7 15.0 170 154-329 176-357 (378)
36 COG0407 HemE Uroporphyrinogen- 99.4 2E-11 4.3E-16 114.9 16.8 185 135-329 124-328 (352)
37 KOG2872 Uroporphyrinogen decar 98.0 3.5E-05 7.7E-10 69.6 9.6 143 177-328 184-335 (359)
38 PLN02334 ribulose-phosphate 3- 95.4 0.13 2.8E-06 46.0 9.7 73 188-266 22-97 (229)
39 cd00530 PTE Phosphotriesterase 94.5 1.4 3.1E-05 40.5 14.5 108 215-329 131-246 (293)
40 COG0646 MetH Methionine syntha 94.5 2.9 6.3E-05 38.7 15.7 142 181-329 138-296 (311)
41 PRK08091 ribulose-phosphate 3- 92.9 1 2.3E-05 40.3 9.8 96 187-296 26-128 (228)
42 PF00834 Ribul_P_3_epim: Ribul 92.8 1.7 3.7E-05 38.1 11.0 93 188-292 14-112 (201)
43 PRK00043 thiE thiamine-phospha 92.3 1.7 3.8E-05 37.8 10.5 69 188-269 23-91 (212)
44 PRK08745 ribulose-phosphate 3- 92.2 1.7 3.7E-05 38.8 10.2 86 187-280 17-108 (223)
45 PRK08883 ribulose-phosphate 3- 92.1 1.5 3.3E-05 39.0 10.0 85 187-279 13-103 (220)
46 PF02581 TMP-TENI: Thiamine mo 92.0 1.4 3.1E-05 37.7 9.4 69 189-270 15-83 (180)
47 PRK08005 epimerase; Validated 91.9 2 4.3E-05 38.0 10.3 85 187-280 14-104 (210)
48 PF01729 QRPTase_C: Quinolinat 90.4 1.3 2.8E-05 37.8 7.4 63 192-267 93-156 (169)
49 cd00564 TMP_TenI Thiamine mono 90.1 4.2 9E-05 34.6 10.6 69 188-269 14-82 (196)
50 KOG3111 D-ribulose-5-phosphate 90.0 3.5 7.5E-05 35.8 9.5 88 188-280 19-110 (224)
51 COG1099 Predicted metal-depend 89.9 13 0.00028 33.1 13.2 112 200-329 95-213 (254)
52 PRK08195 4-hyroxy-2-oxovalerat 89.8 18 0.00039 34.3 15.4 132 188-329 27-168 (337)
53 COG0036 Rpe Pentose-5-phosphat 89.3 6.1 0.00013 35.1 10.8 85 187-280 17-107 (220)
54 PRK10812 putative DNAse; Provi 89.2 4.7 0.0001 36.9 10.7 112 201-329 88-207 (265)
55 cd00739 DHPS DHPS subgroup of 88.6 18 0.00038 33.0 13.9 127 191-329 29-176 (257)
56 TIGR02082 metH 5-methyltetrahy 88.0 20 0.00043 39.9 16.0 141 181-329 143-299 (1178)
57 PRK03512 thiamine-phosphate py 88.0 4.9 0.00011 35.5 9.6 66 191-269 24-89 (211)
58 PTZ00170 D-ribulose-5-phosphat 87.7 12 0.00025 33.5 12.0 93 187-290 20-119 (228)
59 PRK14057 epimerase; Provisiona 87.5 5.8 0.00013 36.1 9.8 83 187-280 33-121 (254)
60 PRK09722 allulose-6-phosphate 87.0 5.1 0.00011 35.9 9.2 84 187-280 16-106 (229)
61 PRK08508 biotin synthase; Prov 86.2 21 0.00046 32.8 13.2 123 192-325 49-186 (279)
62 cd04724 Tryptophan_synthase_al 85.8 11 0.00023 34.0 10.7 76 188-265 16-110 (242)
63 PRK08999 hypothetical protein; 85.7 6.5 0.00014 36.6 9.6 67 190-269 148-214 (312)
64 TIGR01496 DHPS dihydropteroate 85.6 28 0.00061 31.7 15.7 88 188-280 25-116 (257)
65 PF03437 BtpA: BtpA family; I 85.3 29 0.00063 31.6 14.8 140 181-326 24-180 (254)
66 cd00429 RPE Ribulose-5-phospha 84.9 7.9 0.00017 33.5 9.3 72 188-265 14-86 (211)
67 PRK05581 ribulose-phosphate 3- 84.7 9.6 0.00021 33.3 9.8 20 188-207 18-37 (220)
68 PRK07896 nicotinate-nucleotide 84.2 4.7 0.0001 37.4 7.7 64 191-267 211-275 (289)
69 PRK06559 nicotinate-nucleotide 83.8 5.7 0.00012 36.8 8.1 62 190-267 208-270 (290)
70 COG3462 Predicted membrane pro 83.8 1.4 3.1E-05 34.2 3.4 27 15-41 89-115 (117)
71 PRK09490 metH B12-dependent me 83.6 48 0.001 37.1 16.2 142 181-329 159-315 (1229)
72 PRK05848 nicotinate-nucleotide 83.6 7.1 0.00015 36.0 8.6 66 190-268 193-259 (273)
73 PF09851 SHOCT: Short C-termin 83.6 3.2 6.9E-05 24.8 4.2 27 15-41 3-29 (31)
74 COG0157 NadC Nicotinate-nucleo 82.5 7.5 0.00016 35.7 8.1 64 191-268 200-264 (280)
75 PRK08385 nicotinate-nucleotide 82.4 7.5 0.00016 35.9 8.3 66 191-267 194-260 (278)
76 PRK07428 nicotinate-nucleotide 82.3 7.3 0.00016 36.2 8.2 64 191-267 208-272 (288)
77 TIGR01163 rpe ribulose-phospha 82.2 14 0.0003 32.0 9.7 70 187-265 12-85 (210)
78 TIGR01334 modD putative molybd 81.8 6.9 0.00015 36.1 7.8 65 190-267 199-264 (277)
79 PRK06512 thiamine-phosphate py 81.8 37 0.00081 30.1 12.6 66 190-268 30-96 (221)
80 TIGR00693 thiE thiamine-phosph 81.7 20 0.00043 30.8 10.4 66 190-268 17-82 (196)
81 PRK06096 molybdenum transport 81.6 6.8 0.00015 36.3 7.7 65 190-267 200-265 (284)
82 cd07943 DRE_TIM_HOA 4-hydroxy- 81.3 42 0.00091 30.5 14.7 129 189-327 25-163 (263)
83 PF05120 GvpG: Gas vesicle pro 81.0 5.5 0.00012 29.4 5.5 35 15-49 35-69 (79)
84 PRK06978 nicotinate-nucleotide 80.9 6.8 0.00015 36.4 7.4 63 190-268 216-279 (294)
85 cd07944 DRE_TIM_HOA_like 4-hyd 80.5 46 0.001 30.4 13.5 136 189-329 23-162 (266)
86 COG0084 TatD Mg-dependent DNas 80.1 47 0.001 30.3 13.3 112 201-328 88-206 (256)
87 PRK06543 nicotinate-nucleotide 80.0 9.6 0.00021 35.2 8.1 62 190-267 204-266 (281)
88 cd00423 Pterin_binding Pterin 78.4 52 0.0011 29.8 15.5 133 187-329 25-176 (258)
89 COG0352 ThiE Thiamine monophos 78.1 20 0.00044 31.7 9.3 77 190-279 25-102 (211)
90 PRK09016 quinolinate phosphori 78.1 11 0.00024 35.0 7.9 62 191-268 220-282 (296)
91 PRK02615 thiamine-phosphate py 78.0 23 0.0005 33.8 10.2 68 189-269 160-227 (347)
92 COG5016 Pyruvate/oxaloacetate 77.8 11 0.00024 36.5 7.8 73 187-266 157-231 (472)
93 PRK06106 nicotinate-nucleotide 77.8 11 0.00025 34.8 7.8 61 191-267 206-267 (281)
94 PRK12290 thiE thiamine-phospha 77.5 15 0.00032 36.1 8.9 66 191-269 222-287 (437)
95 PRK11613 folP dihydropteroate 77.4 61 0.0013 30.0 16.3 132 190-329 42-189 (282)
96 PRK02412 aroD 3-dehydroquinate 77.2 56 0.0012 29.6 12.7 66 250-319 99-166 (253)
97 PRK04452 acetyl-CoA decarbonyl 75.1 52 0.0011 31.0 11.6 76 179-257 68-147 (319)
98 PRK13753 dihydropteroate synth 74.0 75 0.0016 29.4 13.5 84 190-280 29-117 (279)
99 PLN02898 HMP-P kinase/thiamin- 73.9 30 0.00065 34.7 10.4 67 190-269 311-377 (502)
100 TIGR03217 4OH_2_O_val_ald 4-hy 73.6 84 0.0018 29.8 15.2 129 188-329 26-167 (333)
101 cd04735 OYE_like_4_FMN Old yel 73.4 38 0.00083 32.3 10.6 90 176-266 135-255 (353)
102 cd00951 KDGDH 5-dehydro-4-deox 72.6 34 0.00073 31.6 9.7 118 187-310 22-147 (289)
103 cd01304 FMDH_A Formylmethanofu 71.9 12 0.00026 37.9 6.9 53 199-255 190-247 (541)
104 TIGR03121 one_C_dehyd_A formyl 71.3 13 0.00029 37.7 7.1 54 199-256 194-252 (556)
105 cd01310 TatD_DNAse TatD like p 71.2 72 0.0016 28.0 12.9 91 222-327 110-201 (251)
106 PF00809 Pterin_bind: Pterin b 70.9 73 0.0016 27.9 12.1 129 192-328 25-172 (210)
107 PRK03620 5-dehydro-4-deoxygluc 70.8 36 0.00078 31.7 9.6 76 187-266 29-108 (303)
108 PRK12330 oxaloacetate decarbox 70.5 33 0.00073 34.4 9.6 72 188-266 157-232 (499)
109 TIGR00510 lipA lipoate synthas 70.5 94 0.002 29.1 12.3 126 188-325 96-242 (302)
110 PRK12331 oxaloacetate decarbox 70.1 36 0.00077 33.7 9.7 72 189-267 157-230 (448)
111 PRK03170 dihydrodipicolinate s 69.1 94 0.002 28.5 13.2 119 187-308 23-150 (292)
112 PRK14041 oxaloacetate decarbox 69.0 39 0.00085 33.6 9.8 73 188-267 155-229 (467)
113 PF06187 DUF993: Protein of un 68.0 9.2 0.0002 36.0 4.7 84 179-267 125-228 (382)
114 PRK13585 1-(5-phosphoribosyl)- 67.9 65 0.0014 28.6 10.3 69 191-268 37-107 (241)
115 PRK07455 keto-hydroxyglutarate 67.7 46 0.001 28.7 8.9 101 191-317 29-129 (187)
116 COG0329 DapA Dihydrodipicolina 67.5 1.1E+02 0.0023 28.6 14.2 121 187-311 26-156 (299)
117 cd00408 DHDPS-like Dihydrodipi 67.3 48 0.0011 30.2 9.6 120 187-309 19-147 (281)
118 cd02803 OYE_like_FMN_family Ol 67.2 44 0.00095 31.2 9.4 90 176-266 132-248 (327)
119 PRK06843 inosine 5-monophospha 66.2 44 0.00096 32.6 9.3 70 188-267 154-223 (404)
120 TIGR03249 KdgD 5-dehydro-4-deo 66.1 50 0.0011 30.5 9.5 76 187-266 27-106 (296)
121 PRK14042 pyruvate carboxylase 65.8 41 0.0009 34.6 9.4 73 188-267 156-230 (596)
122 PLN02716 nicotinate-nucleotide 65.4 30 0.00066 32.4 7.7 68 190-267 214-291 (308)
123 cd07939 DRE_TIM_NifV Streptomy 64.5 1.1E+02 0.0024 27.6 16.5 126 189-329 23-163 (259)
124 TIGR03128 RuMP_HxlA 3-hexulose 64.5 81 0.0018 27.2 10.0 54 238-295 56-112 (206)
125 TIGR00262 trpA tryptophan synt 64.4 1.1E+02 0.0024 27.7 11.4 74 191-266 29-122 (256)
126 PLN02229 alpha-galactosidase 62.3 57 0.0012 32.1 9.2 88 177-269 78-186 (427)
127 cd04733 OYE_like_2_FMN Old yel 62.1 1.1E+02 0.0024 28.8 11.2 88 178-265 141-255 (338)
128 cd02931 ER_like_FMN Enoate red 61.8 68 0.0015 31.0 9.8 90 176-266 141-272 (382)
129 PRK06256 biotin synthase; Vali 61.7 1.4E+02 0.0031 27.9 13.6 126 190-325 98-236 (336)
130 COG0821 gcpE 1-hydroxy-2-methy 61.7 90 0.002 29.6 9.9 124 187-325 37-173 (361)
131 PF00682 HMGL-like: HMGL-like 61.5 1.1E+02 0.0024 26.9 10.6 123 189-325 17-157 (237)
132 cd08207 RLP_NonPhot Ribulose b 61.2 98 0.0021 30.3 10.6 88 192-280 165-257 (406)
133 PRK05742 nicotinate-nucleotide 60.9 49 0.0011 30.5 8.2 62 191-268 201-263 (277)
134 cd04722 TIM_phosphate_binding 60.7 95 0.0021 25.6 11.3 100 188-293 14-122 (200)
135 cd00019 AP2Ec AP endonuclease 60.2 1.3E+02 0.0029 27.1 11.2 90 180-269 79-179 (279)
136 cd00945 Aldolase_Class_I Class 60.2 1E+02 0.0022 25.8 12.0 108 187-313 14-138 (201)
137 PRK07028 bifunctional hexulose 60.2 77 0.0017 31.0 10.0 94 191-296 21-118 (430)
138 TIGR01212 radical SAM protein, 60.1 1.4E+02 0.0031 27.6 11.4 115 190-322 127-256 (302)
139 PRK11449 putative deoxyribonuc 59.9 1.4E+02 0.0029 27.1 12.9 111 202-328 92-208 (258)
140 cd00952 CHBPH_aldolase Trans-o 59.4 81 0.0018 29.4 9.6 91 187-280 30-128 (309)
141 PRK09282 pyruvate carboxylase 59.4 69 0.0015 33.0 9.7 73 188-267 156-230 (592)
142 TIGR00259 thylakoid_BtpA membr 59.1 1.4E+02 0.0031 27.2 14.7 139 181-325 23-178 (257)
143 PRK14040 oxaloacetate decarbox 59.1 70 0.0015 32.9 9.7 73 188-267 157-231 (593)
144 PRK11858 aksA trans-homoaconit 58.9 1.8E+02 0.0038 28.1 15.7 122 190-327 30-167 (378)
145 PRK12581 oxaloacetate decarbox 58.8 74 0.0016 31.7 9.5 71 188-267 165-239 (468)
146 PRK07695 transcriptional regul 58.6 1.2E+02 0.0026 26.1 13.1 61 195-269 23-83 (201)
147 cd08210 RLP_RrRLP Ribulose bis 58.4 1.8E+02 0.0039 28.0 14.3 89 189-278 144-237 (364)
148 PRK05692 hydroxymethylglutaryl 58.3 82 0.0018 29.2 9.3 73 190-268 159-233 (287)
149 TIGR01859 fruc_bis_ald_ fructo 58.1 96 0.0021 28.7 9.7 76 192-271 33-109 (282)
150 TIGR03326 rubisco_III ribulose 57.7 1.4E+02 0.003 29.3 11.1 88 192-280 166-258 (412)
151 cd08209 RLP_DK-MTP-1-P-enolase 57.6 1.2E+02 0.0026 29.5 10.6 88 192-280 146-238 (391)
152 COG1839 Uncharacterized conser 57.5 14 0.00031 30.3 3.5 32 286-318 127-159 (162)
153 PRK09517 multifunctional thiam 57.1 1.8E+02 0.004 30.9 12.7 66 191-270 24-89 (755)
154 TIGR01108 oadA oxaloacetate de 57.0 80 0.0017 32.4 9.7 73 188-267 151-225 (582)
155 PRK09140 2-dehydro-3-deoxy-6-p 56.9 1E+02 0.0022 27.0 9.2 84 191-291 27-110 (206)
156 PRK08255 salicylyl-CoA 5-hydro 56.5 69 0.0015 34.0 9.5 86 181-266 546-658 (765)
157 TIGR01093 aroD 3-dehydroquinat 56.4 1.4E+02 0.0031 26.3 12.8 74 251-327 83-159 (228)
158 COG0710 AroD 3-dehydroquinate 56.3 1.5E+02 0.0033 26.6 12.5 125 190-327 18-157 (231)
159 PRK13125 trpA tryptophan synth 56.3 1.5E+02 0.0033 26.5 11.0 71 193-266 25-108 (244)
160 cd02930 DCR_FMN 2,4-dienoyl-Co 56.2 1.6E+02 0.0034 28.1 11.1 89 176-265 128-243 (353)
161 PLN02692 alpha-galactosidase 55.9 57 0.0012 31.9 8.0 88 177-269 71-180 (412)
162 cd07942 DRE_TIM_LeuA Mycobacte 55.8 1.7E+02 0.0037 27.1 10.9 121 190-318 27-170 (284)
163 cd07937 DRE_TIM_PC_TC_5S Pyruv 55.6 1.7E+02 0.0036 26.8 14.0 131 191-329 26-173 (275)
164 TIGR01235 pyruv_carbox pyruvat 55.4 73 0.0016 35.6 9.6 73 188-267 691-765 (1143)
165 cd02685 MIT_C MIT_C; domain fo 55.0 1.2E+02 0.0027 25.2 9.2 76 190-269 9-93 (148)
166 cd00452 KDPG_aldolase KDPG and 55.0 1E+02 0.0023 26.3 8.9 64 190-266 20-83 (190)
167 PF00036 EF-hand_1: EF hand; 54.6 14 0.0003 21.5 2.3 25 16-40 1-28 (29)
168 cd07943 DRE_TIM_HOA 4-hydroxy- 54.3 1.1E+02 0.0023 27.8 9.3 74 188-267 143-218 (263)
169 PRK09549 mtnW 2,3-diketo-5-met 53.9 1.7E+02 0.0037 28.7 10.9 88 192-280 156-248 (407)
170 cd02933 OYE_like_FMN Old yello 53.9 1.3E+02 0.0027 28.6 10.0 87 180-267 146-262 (338)
171 cd08205 RuBisCO_IV_RLP Ribulos 53.9 1.9E+02 0.004 27.9 11.2 82 188-270 148-234 (367)
172 TIGR03700 mena_SCO4494 putativ 53.8 1.8E+02 0.004 27.6 11.2 111 191-315 87-228 (351)
173 cd08148 RuBisCO_large Ribulose 53.4 1.6E+02 0.0036 28.3 10.6 88 192-280 149-241 (366)
174 COG1031 Uncharacterized Fe-S o 53.3 2.4E+02 0.0052 28.1 11.6 81 186-268 218-321 (560)
175 TIGR00078 nadC nicotinate-nucl 52.9 82 0.0018 28.8 8.2 60 190-265 189-249 (265)
176 cd01572 QPRTase Quinolinate ph 52.6 85 0.0018 28.8 8.3 61 191-267 194-255 (268)
177 PF00682 HMGL-like: HMGL-like 52.1 1E+02 0.0022 27.2 8.6 70 191-267 142-214 (237)
178 PRK04208 rbcL ribulose bisopho 51.6 2E+02 0.0044 28.7 11.2 87 192-279 182-274 (468)
179 PRK14847 hypothetical protein; 51.5 2.1E+02 0.0046 27.2 10.9 118 192-321 60-204 (333)
180 COG3845 ABC-type uncharacteriz 51.5 38 0.00081 33.8 6.0 36 191-229 151-186 (501)
181 PRK12999 pyruvate carboxylase; 51.5 93 0.002 34.8 9.7 76 188-268 693-768 (1146)
182 cd07938 DRE_TIM_HMGL 3-hydroxy 51.0 1.2E+02 0.0026 27.8 9.1 69 190-266 153-225 (274)
183 cd07939 DRE_TIM_NifV Streptomy 50.5 1.4E+02 0.003 26.9 9.4 69 190-265 143-213 (259)
184 PF01261 AP_endonuc_2: Xylose 50.2 64 0.0014 27.2 6.9 88 181-268 66-166 (213)
185 TIGR00433 bioB biotin syntheta 50.0 1.7E+02 0.0037 26.7 10.1 115 189-327 123-249 (296)
186 PRK13523 NADPH dehydrogenase N 49.8 1.4E+02 0.0029 28.4 9.5 89 176-267 133-248 (337)
187 PRK10605 N-ethylmaleimide redu 49.5 1.7E+02 0.0038 28.0 10.3 90 176-267 150-270 (362)
188 cd00950 DHDPS Dihydrodipicolin 49.5 2.1E+02 0.0045 26.1 13.4 121 187-310 22-151 (284)
189 TIGR00010 hydrolase, TatD fami 49.4 1.8E+02 0.0039 25.4 13.1 93 220-328 108-202 (252)
190 cd04734 OYE_like_3_FMN Old yel 49.4 1.3E+02 0.0029 28.4 9.4 89 176-265 132-248 (343)
191 cd04747 OYE_like_5_FMN Old yel 49.3 1.5E+02 0.0032 28.5 9.7 90 176-266 135-255 (361)
192 TIGR02660 nifV_homocitr homoci 49.1 2.5E+02 0.0053 26.9 16.0 125 190-329 27-166 (365)
193 cd02932 OYE_YqiM_FMN Old yello 48.9 2.3E+02 0.0051 26.6 11.7 89 176-265 145-260 (336)
194 cd03174 DRE_TIM_metallolyase D 48.6 2E+02 0.0043 25.6 14.0 130 189-325 22-166 (265)
195 cd08213 RuBisCO_large_III Ribu 48.4 2.1E+02 0.0046 28.0 10.6 88 192-280 153-245 (412)
196 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.3 1.5E+02 0.0033 27.1 9.3 71 191-268 154-226 (275)
197 PRK05458 guanosine 5'-monophos 48.2 1.3E+02 0.0029 28.4 9.0 68 189-266 99-168 (326)
198 PRK08072 nicotinate-nucleotide 48.2 88 0.0019 28.9 7.7 61 191-267 200-261 (277)
199 COG1902 NemA NADH:flavin oxido 47.9 1.6E+02 0.0036 28.2 9.7 91 176-267 140-259 (363)
200 PRK10425 DNase TatD; Provision 47.6 2.2E+02 0.0047 25.8 11.4 94 220-328 108-204 (258)
201 cd07941 DRE_TIM_LeuA3 Desulfob 47.5 1.7E+02 0.0036 26.8 9.5 71 192-268 157-229 (273)
202 TIGR00683 nanA N-acetylneurami 47.5 1.4E+02 0.0031 27.4 9.1 119 187-308 22-151 (290)
203 PRK03739 2-isopropylmalate syn 47.3 2E+02 0.0043 29.4 10.7 122 191-319 57-200 (552)
204 TIGR00674 dapA dihydrodipicoli 47.3 2.3E+02 0.0049 25.9 12.6 120 187-309 20-148 (285)
205 PLN02417 dihydrodipicolinate s 47.0 2.3E+02 0.005 25.9 12.5 118 187-308 23-148 (280)
206 cd08208 RLP_Photo Ribulose bis 46.9 2.1E+02 0.0045 28.2 10.3 88 192-280 182-274 (424)
207 cd08206 RuBisCO_large_I_II_III 46.4 2.2E+02 0.0048 27.9 10.5 88 192-280 154-247 (414)
208 cd03174 DRE_TIM_metallolyase D 45.6 1.6E+02 0.0035 26.2 9.1 68 190-264 150-220 (265)
209 cd07945 DRE_TIM_CMS Leptospira 45.2 1.7E+02 0.0037 26.9 9.1 70 190-267 151-224 (280)
210 PTZ00413 lipoate synthase; Pro 45.1 1.8E+02 0.0038 28.3 9.3 118 191-320 185-325 (398)
211 cd07944 DRE_TIM_HOA_like 4-hyd 44.9 1.7E+02 0.0037 26.6 9.1 70 191-267 143-216 (266)
212 PRK06806 fructose-bisphosphate 44.8 1.2E+02 0.0026 28.0 8.0 63 190-265 156-229 (281)
213 cd01573 modD_like ModD; Quinol 44.8 1.2E+02 0.0026 27.8 8.1 63 191-266 195-258 (272)
214 PRK09875 putative hydrolase; P 44.6 2.6E+02 0.0057 25.9 15.4 85 236-328 152-244 (292)
215 PRK03906 mannonate dehydratase 44.5 99 0.0021 30.0 7.7 96 154-258 180-290 (385)
216 cd01568 QPRTase_NadC Quinolina 44.4 1E+02 0.0022 28.2 7.5 60 192-265 194-254 (269)
217 cd07940 DRE_TIM_IPMS 2-isoprop 44.3 1.7E+02 0.0037 26.5 9.0 71 192-267 149-222 (268)
218 PLN02808 alpha-galactosidase 44.2 1.3E+02 0.0028 29.3 8.4 87 178-269 48-156 (386)
219 PF00701 DHDPS: Dihydrodipicol 43.8 2.6E+02 0.0056 25.6 10.8 78 186-266 22-103 (289)
220 PRK05096 guanosine 5'-monophos 43.2 1.1E+02 0.0023 29.2 7.5 64 191-266 112-179 (346)
221 TIGR00970 leuA_yeast 2-isoprop 42.4 2.4E+02 0.0052 28.9 10.5 100 191-317 53-154 (564)
222 PLN02389 biotin synthase 42.3 3.3E+02 0.0071 26.3 15.2 117 190-315 123-253 (379)
223 PLN02746 hydroxymethylglutaryl 42.3 1.9E+02 0.0042 27.6 9.2 72 190-268 201-275 (347)
224 PRK08195 4-hyroxy-2-oxovalerat 42.1 1E+02 0.0022 29.3 7.3 68 190-263 148-218 (337)
225 COG5126 FRQ1 Ca2+-binding prot 41.9 21 0.00046 30.1 2.4 59 10-68 87-151 (160)
226 PF09370 TIM-br_sig_trns: TIM- 41.9 53 0.0011 30.1 5.0 76 189-268 160-248 (268)
227 PF00478 IMPDH: IMP dehydrogen 41.5 1.8E+02 0.004 27.8 8.9 67 190-268 111-179 (352)
228 KOG2367 Alpha-isopropylmalate 41.3 3.8E+02 0.0083 26.9 11.5 63 263-328 189-258 (560)
229 PF04131 NanE: Putative N-acet 41.1 1.6E+02 0.0034 25.7 7.6 68 189-268 54-121 (192)
230 PRK09058 coproporphyrinogen II 41.1 3.6E+02 0.0079 26.6 14.2 139 178-324 87-249 (449)
231 PRK05628 coproporphyrinogen II 41.1 3.3E+02 0.0071 26.0 13.1 135 182-324 36-194 (375)
232 PF13714 PEP_mutase: Phosphoen 40.9 2.6E+02 0.0056 25.1 9.4 68 184-268 154-221 (238)
233 COG1856 Uncharacterized homolo 40.8 2.7E+02 0.0059 25.0 9.9 125 190-319 46-220 (275)
234 PRK07565 dihydroorotate dehydr 40.8 2.7E+02 0.0058 26.2 10.0 74 190-266 118-197 (334)
235 PRK07360 FO synthase subunit 2 40.5 3.4E+02 0.0073 26.0 10.8 111 190-315 98-241 (371)
236 PF07745 Glyco_hydro_53: Glyco 40.5 3.3E+02 0.0071 25.9 11.1 92 176-268 100-207 (332)
237 COG0434 SgcQ Predicted TIM-bar 40.3 2.9E+02 0.0062 25.1 14.7 83 181-266 29-115 (263)
238 TIGR03858 LLM_2I7G probable ox 40.3 28 0.0006 32.9 3.2 32 298-329 283-314 (337)
239 TIGR00612 ispG_gcpE 1-hydroxy- 40.2 3.4E+02 0.0073 25.9 13.1 125 186-325 34-171 (346)
240 PRK04147 N-acetylneuraminate l 40.2 2.2E+02 0.0049 26.1 9.2 91 187-280 25-124 (293)
241 COG0621 MiaB 2-methylthioadeni 40.2 3.8E+02 0.0082 26.5 11.0 90 187-278 177-273 (437)
242 PRK05481 lipoyl synthase; Prov 40.0 3E+02 0.0066 25.3 12.1 128 189-325 86-231 (289)
243 cd06557 KPHMT-like Ketopantoat 39.7 2.4E+02 0.0051 25.7 9.0 72 195-268 28-113 (254)
244 TIGR02313 HpaI-NOT-DapA 2,4-di 39.5 3.1E+02 0.0067 25.3 13.1 121 187-310 22-152 (294)
245 PRK08599 coproporphyrinogen II 39.2 3.5E+02 0.0076 25.8 13.9 136 182-324 31-186 (377)
246 TIGR03332 salvage_mtnW 2,3-dik 38.7 2.9E+02 0.0064 27.0 10.0 87 193-280 162-253 (407)
247 PF00016 RuBisCO_large: Ribulo 38.1 2.3E+02 0.005 26.6 8.8 81 192-272 36-121 (309)
248 cd00954 NAL N-Acetylneuraminic 38.0 3.2E+02 0.0069 25.0 10.4 77 186-265 21-102 (288)
249 PRK07807 inosine 5-monophospha 37.6 1.5E+02 0.0034 29.6 8.1 69 186-266 226-296 (479)
250 PRK05660 HemN family oxidoredu 37.6 3.8E+02 0.0082 25.7 13.5 140 178-324 37-193 (378)
251 cd07947 DRE_TIM_Re_CS Clostrid 37.1 3.4E+02 0.0073 25.0 15.4 124 190-325 25-170 (279)
252 PRK07259 dihydroorotate dehydr 37.0 3.1E+02 0.0067 25.2 9.6 73 190-265 108-188 (301)
253 COG1219 ClpX ATP-dependent pro 36.7 68 0.0015 30.5 5.0 94 169-266 136-255 (408)
254 cd01096 Alkanal_monooxygenase 36.3 44 0.00096 31.1 3.9 31 299-329 272-302 (315)
255 PRK01060 endonuclease IV; Prov 35.9 3.3E+02 0.007 24.5 13.2 15 192-206 18-32 (281)
256 TIGR00381 cdhD CO dehydrogenas 35.9 4.2E+02 0.0091 25.8 12.8 59 196-257 150-211 (389)
257 PF01026 TatD_DNase: TatD rela 35.9 2.2E+02 0.0048 25.5 8.3 94 220-328 111-206 (255)
258 PRK07094 biotin synthase; Prov 35.8 3.6E+02 0.0078 25.0 15.6 122 190-325 77-215 (323)
259 COG0648 Nfo Endonuclease IV [D 35.6 3.6E+02 0.0079 24.9 10.7 88 178-268 79-177 (280)
260 PRK07535 methyltetrahydrofolat 35.4 3.5E+02 0.0075 24.6 15.3 128 187-329 26-164 (261)
261 PF13679 Methyltransf_32: Meth 34.9 54 0.0012 26.6 3.8 27 236-263 101-128 (141)
262 cd02810 DHOD_DHPD_FMN Dihydroo 34.8 3.2E+02 0.007 24.8 9.4 73 192-266 117-196 (289)
263 PRK07379 coproporphyrinogen II 34.6 4.3E+02 0.0094 25.5 14.1 138 181-325 46-202 (400)
264 smart00518 AP2Ec AP endonuclea 34.6 3.4E+02 0.0073 24.3 11.1 89 179-269 77-176 (273)
265 CHL00200 trpA tryptophan synth 34.2 3.7E+02 0.0079 24.6 10.6 74 190-266 33-126 (263)
266 cd00377 ICL_PEPM Members of th 34.0 3.5E+02 0.0075 24.2 9.7 119 192-328 22-149 (243)
267 PLN02803 beta-amylase 33.8 1.5E+02 0.0031 30.1 7.0 83 186-268 107-201 (548)
268 PLN02705 beta-amylase 33.8 1.5E+02 0.0032 30.6 7.1 64 186-249 268-335 (681)
269 COG3010 NanE Putative N-acetyl 33.5 3.4E+02 0.0075 24.1 11.5 23 187-209 86-108 (229)
270 cd00019 AP2Ec AP endonuclease 33.4 3.6E+02 0.0078 24.2 13.9 14 192-205 16-29 (279)
271 TIGR00222 panB 3-methyl-2-oxob 33.2 3.9E+02 0.0084 24.5 10.5 118 195-316 31-169 (263)
272 cd04739 DHOD_like Dihydroorota 33.0 4.2E+02 0.009 24.9 10.0 75 192-268 118-197 (325)
273 COG3867 Arabinogalactan endo-1 32.6 4.2E+02 0.009 25.0 9.2 92 177-268 147-253 (403)
274 PRK06801 hypothetical protein; 32.4 3.6E+02 0.0079 24.9 9.2 74 192-271 35-109 (286)
275 PRK00366 ispG 4-hydroxy-3-meth 32.4 4.6E+02 0.01 25.2 13.1 125 186-325 42-180 (360)
276 TIGR03217 4OH_2_O_val_ald 4-hy 32.2 3.4E+02 0.0075 25.6 9.2 71 189-265 146-219 (333)
277 PF04008 Adenosine_kin: Adenos 32.1 32 0.00069 28.5 1.8 32 286-318 120-152 (155)
278 PRK10508 hypothetical protein; 32.0 42 0.00091 31.8 3.0 30 299-328 284-313 (333)
279 PRK11858 aksA trans-homoaconit 31.9 3.4E+02 0.0074 26.1 9.3 46 192-244 151-196 (378)
280 TIGR03239 GarL 2-dehydro-3-deo 31.6 3.9E+02 0.0084 24.1 9.4 75 195-279 29-104 (249)
281 PLN02801 beta-amylase 31.5 1.8E+02 0.0038 29.3 7.1 81 187-267 38-130 (517)
282 TIGR03471 HpnJ hopanoid biosyn 31.4 5.2E+02 0.011 25.5 11.4 125 188-324 232-372 (472)
283 PRK05437 isopentenyl pyrophosp 31.4 2E+02 0.0043 27.5 7.5 70 195-266 144-217 (352)
284 PRK07107 inosine 5-monophospha 31.2 2.2E+02 0.0047 28.7 8.0 67 188-265 243-311 (502)
285 PLN02520 bifunctional 3-dehydr 31.2 5.7E+02 0.012 25.9 12.4 73 250-327 101-176 (529)
286 PLN02905 beta-amylase 31.0 1.7E+02 0.0037 30.3 7.0 83 186-268 286-380 (702)
287 cd08212 RuBisCO_large_I Ribulo 30.9 4.1E+02 0.0089 26.4 9.7 87 192-279 167-258 (450)
288 CHL00040 rbcL ribulose-1,5-bis 30.9 4.7E+02 0.01 26.2 10.1 88 192-279 189-281 (475)
289 cd07938 DRE_TIM_HMGL 3-hydroxy 30.6 4.2E+02 0.0092 24.2 15.1 129 189-328 23-172 (274)
290 PRK07107 inosine 5-monophospha 30.5 3E+02 0.0065 27.7 8.8 63 247-316 242-308 (502)
291 PF01702 TGT: Queuine tRNA-rib 30.2 3.9E+02 0.0085 23.7 9.0 121 189-318 1-139 (238)
292 COG0419 SbcC ATPase involved i 30.1 1.3E+02 0.0028 32.7 6.6 51 191-244 831-883 (908)
293 cd01301 rDP_like renal dipepti 30.1 4.6E+02 0.01 24.5 14.2 54 271-327 209-264 (309)
294 COG1856 Uncharacterized homolo 30.0 4.2E+02 0.009 23.9 11.6 98 192-297 103-231 (275)
295 cd00405 PRAI Phosphoribosylant 30.0 3.6E+02 0.0077 23.1 11.1 71 191-268 11-82 (203)
296 PLN00197 beta-amylase; Provisi 29.9 1.8E+02 0.0039 29.6 6.9 82 187-268 128-221 (573)
297 TIGR02660 nifV_homocitr homoci 29.8 3.8E+02 0.0083 25.6 9.2 64 193-265 149-216 (365)
298 PRK12928 lipoyl synthase; Prov 29.7 4.5E+02 0.0098 24.3 11.4 124 190-325 94-239 (290)
299 TIGR01303 IMP_DH_rel_1 IMP deh 29.5 3.3E+02 0.0071 27.3 8.8 71 186-266 224-294 (475)
300 PLN02591 tryptophan synthase 29.2 4.4E+02 0.0094 23.9 10.7 73 190-265 20-112 (250)
301 PRK05904 coproporphyrinogen II 28.9 5.1E+02 0.011 24.6 14.5 135 178-324 35-189 (353)
302 cd00381 IMPDH IMPDH: The catal 28.8 4.1E+02 0.0089 25.0 9.1 68 189-266 96-163 (325)
303 PLN02161 beta-amylase 28.6 1.9E+02 0.0042 29.1 6.8 82 186-267 117-210 (531)
304 TIGR02898 spore_YhcN_YlaJ spor 28.3 1.1E+02 0.0025 25.7 4.6 43 285-327 78-122 (158)
305 cd07948 DRE_TIM_HCS Saccharomy 28.2 4.6E+02 0.0099 23.8 9.2 70 190-268 145-218 (262)
306 COG0635 HemN Coproporphyrinoge 28.0 5.8E+02 0.013 25.0 14.8 142 179-324 62-223 (416)
307 TIGR01305 GMP_reduct_1 guanosi 28.0 3.3E+02 0.0071 26.0 8.0 65 190-266 110-178 (343)
308 COG1126 GlnQ ABC-type polar am 28.0 2E+02 0.0044 25.8 6.3 44 197-244 152-196 (240)
309 PRK14336 (dimethylallyl)adenos 27.9 5.7E+02 0.012 24.9 11.8 78 187-267 157-241 (418)
310 PF05121 GvpK: Gas vesicle pro 27.6 2.2E+02 0.0047 21.5 5.5 38 18-55 31-71 (88)
311 TIGR02320 PEP_mutase phosphoen 27.5 4.6E+02 0.01 24.2 9.0 67 192-268 175-242 (285)
312 PF09580 Spore_YhcN_YlaJ: Spor 27.1 1.2E+02 0.0026 25.5 4.7 41 285-327 99-141 (177)
313 PF09695 YtfJ_HI0045: Bacteria 27.0 3.9E+02 0.0084 22.6 8.0 74 232-328 34-113 (160)
314 PF04763 DUF562: Protein of un 26.9 51 0.0011 27.0 2.1 19 193-211 112-130 (146)
315 PRK12344 putative alpha-isopro 26.8 6.8E+02 0.015 25.4 11.6 128 190-327 31-180 (524)
316 PLN02424 ketopantoate hydroxym 26.7 5.6E+02 0.012 24.4 10.6 119 194-316 50-191 (332)
317 PF00290 Trp_syntA: Tryptophan 26.5 4.4E+02 0.0095 24.0 8.5 74 190-265 28-121 (259)
318 TIGR03551 F420_cofH 7,8-dideme 26.1 5.6E+02 0.012 24.1 10.1 66 189-264 76-156 (343)
319 TIGR02090 LEU1_arch isopropylm 25.7 5.9E+02 0.013 24.3 15.2 122 190-326 26-162 (363)
320 PF12174 RST: RCD1-SRO-TAF4 (R 25.7 2.4E+02 0.0052 20.2 5.3 32 15-46 28-59 (70)
321 PF13405 EF-hand_6: EF-hand do 25.6 92 0.002 17.8 2.7 25 16-40 1-28 (31)
322 PF03786 UxuA: D-mannonate deh 25.5 3.1E+02 0.0067 26.3 7.5 73 175-249 175-248 (351)
323 COG0157 NadC Nicotinate-nucleo 25.5 1E+02 0.0022 28.5 4.1 57 16-72 197-274 (280)
324 PF03328 HpcH_HpaI: HpcH/HpaI 24.9 4.6E+02 0.01 22.8 8.8 82 193-277 15-102 (221)
325 PRK14340 (dimethylallyl)adenos 24.8 6E+02 0.013 25.0 9.8 124 135-265 181-334 (445)
326 PRK08444 hypothetical protein; 24.7 6.2E+02 0.013 24.2 11.5 108 192-315 89-229 (353)
327 TIGR02090 LEU1_arch isopropylm 24.6 4.7E+02 0.01 25.0 8.8 32 192-225 147-178 (363)
328 COG1592 Rubrerythrin [Energy p 24.5 75 0.0016 27.0 2.9 24 306-329 118-141 (166)
329 COG0320 LipA Lipoate synthase 24.4 62 0.0013 29.9 2.5 26 39-64 227-252 (306)
330 PRK14340 (dimethylallyl)adenos 24.3 6.9E+02 0.015 24.6 11.6 77 188-268 183-266 (445)
331 COG1122 CbiO ABC-type cobalt t 24.2 2.3E+02 0.0049 25.4 6.1 36 194-231 151-186 (235)
332 PRK05096 guanosine 5'-monophos 24.2 2E+02 0.0043 27.5 5.8 60 250-317 111-176 (346)
333 cd01571 NAPRTase_B Nicotinate 24.2 3.6E+02 0.0079 25.1 7.7 64 199-268 211-275 (302)
334 PRK13111 trpA tryptophan synth 24.2 5.4E+02 0.012 23.3 10.8 74 191-265 31-123 (258)
335 TIGR03558 oxido_grp_1 lucifera 24.1 77 0.0017 29.6 3.2 30 298-327 277-306 (323)
336 PF14178 YppF: YppF-like prote 24.0 1.4E+02 0.003 20.8 3.6 27 15-41 23-49 (60)
337 TIGR02320 PEP_mutase phosphoen 23.8 5.8E+02 0.013 23.6 13.5 88 188-279 94-203 (285)
338 PRK09240 thiH thiamine biosynt 23.7 6.5E+02 0.014 24.1 12.8 71 187-266 108-180 (371)
339 cd07948 DRE_TIM_HCS Saccharomy 23.7 5.5E+02 0.012 23.3 15.7 122 189-325 25-161 (262)
340 cd00947 TBP_aldolase_IIB Tagat 23.6 5.8E+02 0.013 23.5 13.2 114 192-312 30-159 (276)
341 cd05026 S-100Z S-100Z: S-100Z 23.6 3E+02 0.0065 20.5 5.9 52 15-68 10-76 (93)
342 cd04740 DHOD_1B_like Dihydroor 23.6 5.7E+02 0.012 23.3 9.6 72 190-265 106-185 (296)
343 PF00478 IMPDH: IMP dehydrogen 23.5 4.4E+02 0.0096 25.3 8.2 60 248-315 109-172 (352)
344 cd02811 IDI-2_FMN Isopentenyl- 23.1 2.8E+02 0.006 26.1 6.8 68 197-266 138-209 (326)
345 PLN02321 2-isopropylmalate syn 23.0 8.7E+02 0.019 25.3 11.9 128 190-325 112-260 (632)
346 PRK10558 alpha-dehydro-beta-de 23.0 5.7E+02 0.012 23.1 8.9 75 195-279 36-111 (256)
347 COG1129 MglA ABC-type sugar tr 23.0 1.9E+02 0.0042 29.1 5.8 35 192-229 157-191 (500)
348 PF03979 Sigma70_r1_1: Sigma-7 22.9 1.5E+02 0.0032 21.7 4.0 35 25-59 18-58 (82)
349 TIGR01859 fruc_bis_ald_ fructo 22.9 3E+02 0.0064 25.4 6.8 75 237-319 201-278 (282)
350 KOG3338 Divalent cation tolera 22.9 90 0.0019 25.4 2.8 36 108-144 109-144 (153)
351 smart00518 AP2Ec AP endonuclea 22.8 5.5E+02 0.012 22.9 12.9 20 302-321 186-205 (273)
352 PF04273 DUF442: Putative phos 22.5 2.4E+02 0.0052 22.0 5.3 47 194-248 52-98 (110)
353 PRK14329 (dimethylallyl)adenos 22.5 7.6E+02 0.017 24.4 12.3 131 187-325 201-360 (467)
354 PLN02274 inosine-5'-monophosph 22.4 4E+02 0.0087 26.9 8.1 67 189-265 250-316 (505)
355 COG2306 Predicted RNA-binding 22.3 2E+02 0.0043 24.6 4.9 34 15-53 126-159 (183)
356 PF01487 DHquinase_I: Type I 3 22.2 5.3E+02 0.011 22.5 13.2 118 191-319 15-144 (224)
357 PRK03170 dihydrodipicolinate s 22.2 6E+02 0.013 23.1 12.5 72 191-269 88-164 (292)
358 PRK01060 endonuclease IV; Prov 22.2 5.7E+02 0.012 22.9 11.9 89 179-268 82-181 (281)
359 cd05023 S-100A11 S-100A11: S-1 22.2 3.3E+02 0.0073 20.2 6.0 52 15-68 9-75 (89)
360 TIGR00674 dapA dihydrodipicoli 22.0 6.1E+02 0.013 23.1 12.0 71 192-269 86-161 (285)
361 TIGR01305 GMP_reduct_1 guanosi 21.9 5.2E+02 0.011 24.7 8.1 63 250-325 110-178 (343)
362 cd00958 DhnA Class I fructose- 21.9 5.4E+02 0.012 22.5 12.3 120 191-324 81-213 (235)
363 PRK01261 aroD 3-dehydroquinate 21.8 5.8E+02 0.012 22.8 13.7 115 192-327 39-156 (229)
364 PF13714 PEP_mutase: Phosphoen 21.5 4.6E+02 0.01 23.5 7.6 72 195-268 25-107 (238)
365 COG4604 CeuD ABC-type enteroch 21.5 2.6E+02 0.0056 24.9 5.6 44 198-243 152-195 (252)
366 PRK13209 L-xylulose 5-phosphat 21.5 5.9E+02 0.013 22.8 9.8 87 181-267 94-188 (283)
367 PRK00915 2-isopropylmalate syn 21.2 6E+02 0.013 25.6 9.1 75 186-264 149-226 (513)
368 TIGR01302 IMP_dehydrog inosine 21.1 4.1E+02 0.0089 26.2 7.8 68 189-266 226-293 (450)
369 PRK09856 fructoselysine 3-epim 21.1 5.9E+02 0.013 22.6 10.2 89 181-269 85-184 (275)
370 TIGR00973 leuA_bact 2-isopropy 21.0 4E+02 0.0086 26.8 7.8 50 192-244 152-201 (494)
371 COG0159 TrpA Tryptophan syntha 21.0 6.5E+02 0.014 23.1 15.1 21 189-209 34-54 (265)
372 COG1121 ZnuC ABC-type Mn/Zn tr 20.9 3E+02 0.0064 25.1 6.2 33 198-232 156-188 (254)
373 PRK08645 bifunctional homocyst 20.7 9.4E+02 0.02 24.8 15.4 124 182-316 121-262 (612)
374 cd02940 DHPD_FMN Dihydropyrimi 20.7 6.7E+02 0.014 23.1 8.8 72 192-265 119-199 (299)
375 TIGR00587 nfo apurinic endonuc 20.7 6.3E+02 0.014 22.8 12.5 131 188-329 13-179 (274)
376 TIGR02151 IPP_isom_2 isopenten 20.7 3.3E+02 0.0071 25.7 6.8 68 198-267 140-211 (333)
377 COG1092 Predicted SAM-dependen 20.6 6.6E+02 0.014 24.5 8.9 77 190-266 279-365 (393)
378 PRK09613 thiH thiamine biosynt 20.4 5.8E+02 0.013 25.5 8.6 76 186-264 118-195 (469)
379 PRK00311 panB 3-methyl-2-oxobu 20.4 6.7E+02 0.014 22.9 9.9 73 195-268 31-116 (264)
380 cd00408 DHDPS-like Dihydrodipi 20.3 6.4E+02 0.014 22.7 12.4 72 190-268 83-159 (281)
No 1
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=8.2e-76 Score=556.94 Aligned_cols=322 Identities=43% Similarity=0.719 Sum_probs=292.1
Q ss_pred ceeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccCC
Q 020229 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR 81 (329)
Q Consensus 2 ~t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~r 81 (329)
.||++||||+|..||||+|+|+||+|+||.++|++++++++.++|++|+++||+.||||||||||||||++++||+||+|
T Consensus 1 ~~~~~GyPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 1 KTHILGFPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHHH
Q 020229 82 YNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSY 161 (329)
Q Consensus 82 ~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~tl 161 (329)
|....+..+++.||+++||..+..+.+|||||||||||++|++.+++++++..++++++|+++++.+.+.||+||||+||
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~~~~~K~~i~GP~T~ 160 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKALGINTKPVLLGPVTF 160 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhcCCCCcEEEECHHHH
Confidence 98654556789999999997667789999999999999999999998887667889999999999887789999999999
Q ss_pred HhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEE
Q 020229 162 LLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHT 241 (329)
Q Consensus 162 ~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 241 (329)
+.+++. ...| .+.++++.+|+++|++++++|+++||++||||||+|+.+++.+..+.+.+++|.+.++.+ +..+++
T Consensus 161 ~~ls~~-~~~Y--~~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~l 236 (360)
T cd03312 161 LKLSKA-KGGG--FDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAP-GLKLLL 236 (360)
T ss_pred HHHhcc-cccC--CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCC-CCcEEE
Confidence 988874 3312 478999999999999999999999999999999999998887777889999999998875 368899
Q ss_pred eecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 020229 242 HMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI 321 (329)
Q Consensus 242 H~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~ 321 (329)
|+|||+..++++.|.+++||+|++|+++. ...++.+....+.++.+++||||++|+.+|++++++++++++.+++ ++|
T Consensus 237 ~tyfg~~~~~~~~l~~l~Vd~l~le~~~~-~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~ 314 (360)
T cd03312 237 ATYFGSLGENLDLLASLPVDGLHLDLVRG-PENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDR 314 (360)
T ss_pred EecccchHHHHHHHHcCCCCEEEEEecCC-cccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCc
Confidence 99999999999999999999999999875 2344455432334789999999999999999999999999999999 899
Q ss_pred eEeCCCCC
Q 020229 322 LWVNPDLH 329 (329)
Q Consensus 322 l~ispdCG 329 (329)
++||||||
T Consensus 315 l~lsp~Cg 322 (360)
T cd03312 315 LVVSPSCS 322 (360)
T ss_pred EEEECCCC
Confidence 99999998
No 2
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=1.3e-71 Score=566.84 Aligned_cols=327 Identities=65% Similarity=1.029 Sum_probs=299.1
Q ss_pred CceeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 1 ~~t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
|+||++||||+|..||||+|+|+||+|++|.++|+++.+++++++|+.|+++|||+||||||+|||||||++.|+|.||+
T Consensus 1 ~~~~~lGyPRig~~ReLKka~e~yw~G~is~eeL~~~~~~~~~~~~~~Q~~aGld~ItdGdfsryD~vLD~~~m~g~ip~ 80 (766)
T PLN02475 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (766)
T ss_pred CCccccCCCCCCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHhHHHHhccchh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHH
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVS 160 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~t 160 (329)
||....|..+++.||+|+||..++++++|+|||||||||++|++.+++.|++..+.++++|++++++|...||+|+||+|
T Consensus 81 r~~~~~g~~~l~~yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~~~~~l~e~~eA~~~g~~~kpVl~GP~T 160 (766)
T PLN02475 81 RYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (766)
T ss_pred hhhccCCcchHHHHHHHhcCCcccccccceEEecCCcceECcEECCCCccccCccchHHHHHHHHHcCCCCCcEEECHHH
Confidence 99866555679999999999546788999999999999999999999988877788999999999998888999999999
Q ss_pred HHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeE
Q 020229 161 YLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIH 240 (329)
Q Consensus 161 l~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (329)
|+++++....||+..++.+++.+|+++|++++++|.++||+|||||||+|+.+++.++.+.+.++|+.+.++++ +.++.
T Consensus 161 ~l~Lsk~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~-~~~i~ 239 (766)
T PLN02475 161 YLLLSKPAKGVDKSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLS-GLNVL 239 (766)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccC-CCeEE
Confidence 99999853334432358899999999999999999999999999999999999988888999999999998876 37899
Q ss_pred EeecccChH-HHHHHHHhCC-CcEEEEEcCCCchhHHHHhhh-cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 241 THMCYSNFN-DIIHSIIDMD-ADVITIENSRSDEKLLSVFRE-GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 241 lH~C~Gn~~-~i~~~l~~~~-~d~~~lE~~~~~~~~l~~l~~-~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
||+|||++. +.++.+.+++ ||+|++|+.+.+ +.++.+.. .++.++.+++||||.+|...++++++.++++++.+++
T Consensus 240 l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~-~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~ 318 (766)
T PLN02475 240 VETYFADVPAEAYKTLTSLKGVTAFGFDLVRGT-KTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGIV 318 (766)
T ss_pred EEccCCCCCHHHHHHHHcCCCCCEEEEEecCCh-hhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhc
Confidence 999999998 5999999999 999999999865 34556643 2455799999999999999999999999999999999
Q ss_pred CCCceEeCCCCC
Q 020229 318 ETNILWVNPDLH 329 (329)
Q Consensus 318 ~~~~l~ispdCG 329 (329)
++++++|+|+||
T Consensus 319 ~~~~l~v~psCs 330 (766)
T PLN02475 319 GKDKLVVSTSCS 330 (766)
T ss_pred CCCcEEEeCCCC
Confidence 999999999997
No 3
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=8.9e-71 Score=563.53 Aligned_cols=322 Identities=41% Similarity=0.748 Sum_probs=290.8
Q ss_pred CceeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 1 ~~t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
|+||++||||+|..||||+|+|+||+|+||.++|+++++++++++|++|+++|||+||||||||||||||++++||+||+
T Consensus 2 ~~~~~lGyPRiG~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~~Gld~it~Gdfs~yd~vLD~~~~lg~ip~ 81 (758)
T PRK05222 2 IKTHILGFPRIGPRRELKKALESYWAGKISEEELLATARELRARHWQRQKEAGLDLIPVGDFSYYDHVLDTAVLLGAIPE 81 (758)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEeccCCcccHHHHHHHHHHhCCCch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHH
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVS 160 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~t 160 (329)
||....|..+++.||+++||..+.++++|||||||||||++|++.++++|++..++++++|++++++|.+.||+||||+|
T Consensus 82 rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~g~~~K~vl~GP~T 161 (758)
T PRK05222 82 RFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKALGINTKPVLLGPVT 161 (758)
T ss_pred hhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEccHHH
Confidence 99765555678899999999766668999999999999999999999888776789999999999988888999999999
Q ss_pred HHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeE
Q 020229 161 YLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIH 240 (329)
Q Consensus 161 l~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (329)
|+.+++....| .+..+++.+|+++|++++++|+++||++||||||+|+.+++..+.+.+.++|+.+....+ ...+.
T Consensus 162 ~l~ls~~~~~~---~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~-~~~i~ 237 (758)
T PRK05222 162 FLWLSKSKGEG---FDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKP-RPKLL 237 (758)
T ss_pred HHHHhcccccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCC-CCCEE
Confidence 99888731233 378999999999999999999999999999999999999887778889999999987553 35889
Q ss_pred EeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 020229 241 THMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETN 320 (329)
Q Consensus 241 lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~ 320 (329)
||+|||+..++++.|.+++||+|++|+++... .++.+...++.++.+++||||++|+.+|++++++++|+++.+++ +
T Consensus 238 l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~-~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e 314 (758)
T PRK05222 238 LATYFGSLNDALDLLASLPVDGLHLDLVRGPE-QLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--D 314 (758)
T ss_pred EEeeccchhhHHHHHHcCCCCEEEEEeeCCcc-chHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--c
Confidence 99999999889999999999999999987543 24444432345889999999999999999999999999999998 9
Q ss_pred ceEeCCCCC
Q 020229 321 ILWVNPDLH 329 (329)
Q Consensus 321 ~l~ispdCG 329 (329)
+++||||||
T Consensus 315 ~L~lspsCg 323 (758)
T PRK05222 315 RLWVAPSCS 323 (758)
T ss_pred cEEEeCCCC
Confidence 999999998
No 4
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=3.5e-70 Score=503.57 Aligned_cols=309 Identities=41% Similarity=0.729 Sum_probs=249.6
Q ss_pred ceeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccCC
Q 020229 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR 81 (329)
Q Consensus 2 ~t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~r 81 (329)
+||++||||+|..||||+|.|+||+|++|+++|+++..+.+.+.|+.|+++|||.||+|+|+|||||||++.+||.||+|
T Consensus 1 kt~~lGyPRiG~~RELK~alE~yW~g~~~~~~L~~~~~~lr~~~w~~q~~agld~ip~gdfs~YD~vLD~~~~~g~iP~r 80 (310)
T PF08267_consen 1 KTHILGYPRIGPNRELKKALEAYWKGKISEEELEQTAKELRKEHWQLQKEAGLDLIPVGDFSLYDHVLDTAVLLGAIPER 80 (310)
T ss_dssp -EE-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHTT-SBEEES---SS-HHHHHHHHTT---GG
T ss_pred CCccccCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCchhhHHHHHHHHhccCChh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHHH
Q 020229 82 YNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSY 161 (329)
Q Consensus 82 ~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~tl 161 (329)
|+...+..+++.||+|+||..++++++|||||||||||+||++.++.+|++..+.++++|++++++|...||+|+||+||
T Consensus 81 f~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~G~~~kpvL~GP~Tf 160 (310)
T PF08267_consen 81 FRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKALGINTKPVLPGPVTF 160 (310)
T ss_dssp GCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHTTGGEEEEEE-HHHH
T ss_pred hccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhhhcCCeeEEEcHHHH
Confidence 98766778899999999999999999999999999999999999998898888899999999999898899999999999
Q ss_pred HhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEE
Q 020229 162 LLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHT 241 (329)
Q Consensus 162 ~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 241 (329)
+++++. ..+ .+..+++++|+++|.+.++.|.++||.+||||||+|+.+++.+..+.+..+|+.+... .+.++.|
T Consensus 161 L~Lsk~-~~~---~~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~~~--~~~~ill 234 (310)
T PF08267_consen 161 LLLSKN-EDG---SDPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELAAA--PRPKILL 234 (310)
T ss_dssp HHTSEE-TTC---CHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHCCT--TTSEEEE
T ss_pred HHHcCc-CCC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHhcC--CCCcEEE
Confidence 999984 322 2578999999999999999999999999999999999999888889999999999722 3579999
Q ss_pred eecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhh-cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 242 HMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE-GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 242 H~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~-~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
+++||+..+.++.+.+++|+++++|+.+++. .++.+.. .++.++.+++||||.+|...++++.+.+.++++.+.+
T Consensus 235 ~TYFg~~~~~l~~l~~lpv~~l~lDlv~~~~-~l~~~~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~~~ 310 (310)
T PF08267_consen 235 ATYFGDLGDNLELLLDLPVDGLHLDLVRGPE-NLEALLKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLREKV 310 (310)
T ss_dssp E--SS--CCHHHHHTTSSESEEEEETTTHCH-HHHHHHHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHHCC
T ss_pred ECCCCchhhHHHHHhcCCCcEEEeeccCCcc-cHHHHHhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHhcC
Confidence 9999998889999999999999999998433 3445544 4567999999999999999999999999999987653
No 5
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=2.5e-68 Score=544.92 Aligned_cols=317 Identities=44% Similarity=0.762 Sum_probs=288.5
Q ss_pred ccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccCCCCCC
Q 020229 6 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWN 85 (329)
Q Consensus 6 ~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~r~~~~ 85 (329)
+||||+|..||||+|+|+||+|++|.++|+++.+++++++|+.|+++|||+||||||+|||||||++.++|.||+||++.
T Consensus 1 ~g~PRig~~reLK~a~e~yw~gki~~~~L~~~~~~~~~~~~~~Q~~aGld~ItdGdfs~yD~vLd~~~~~g~ip~r~~~~ 80 (750)
T TIGR01371 1 LGFPRIGPKRELKKALESYWAGKITKEELLKVAKDLRKKNWKLQKEAGVDFIPSNDFSLYDHVLDTAVMLGAIPERFGNY 80 (750)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCCcchHHHHHHHHHHhccchHhhhcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHHHHhhc
Q 020229 86 GGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLS 165 (329)
Q Consensus 86 ~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~tl~~~~ 165 (329)
.+..+++.||+|+||..++++++|||||||||||++|++.++++|++..+.++++|++++++|...||+|+||+||++++
T Consensus 81 ~~~~~~~~yFa~arG~~~~~~~emtKwFdtNYhY~VPe~~~~~~~~l~~~~~~~e~~~A~~~g~~~Kpvl~GP~T~l~ls 160 (750)
T TIGR01371 81 GGDLDLDTYFAMARGNKDVPALEMTKWFNTNYHYIVPELSPTTEFKLTSNKPLEEYLEAKELGIETKPVLLGPITFLKLS 160 (750)
T ss_pred ccccchhhhHHHhhCCCCcccceeEEEECCCCeeECCEECCCcceecCcchHHHHHHHHHhcCCCCeEEEECHHHHHHHh
Confidence 44457889999999976778899999999999999999999988987788899999999999888899999999999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc
Q 020229 166 KPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY 245 (329)
Q Consensus 166 ~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~ 245 (329)
+. +.+| .++.+++.+|+++|++++++|.++||+|||||||+|+.+++..+++++.++|+.+.++++ +.++.||+||
T Consensus 161 k~-~~~y--~~~~~ll~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~-~~ki~l~tyF 236 (750)
T TIGR01371 161 KA-VEEP--FEPLSLLEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALS-GLKLLLQTYF 236 (750)
T ss_pred Cc-cCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccC-CceEEEECCC
Confidence 83 3233 478999999999999999999999999999999999999988888999999999988775 3788999999
Q ss_pred cChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 246 SNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 246 Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
|++.++++.|.+++||+|++|+.+++. .++.+...++.+|.+++||||.+|...++++++.++++++.++. ++++|+
T Consensus 237 g~~~~~~~~l~~lpvd~l~lD~v~~~~-~L~~~~~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~ 313 (750)
T TIGR01371 237 DSVGDALEALVSLPVKGIGLDFVHGKG-TLELVKAGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVS 313 (750)
T ss_pred CchHHHHHHHHcCCCCEEEEEeccCcc-cHHHHHhcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEe
Confidence 999999999999999999999997653 34444322455889999999999999999999999999999965 459999
Q ss_pred CCCC
Q 020229 326 PDLH 329 (329)
Q Consensus 326 pdCG 329 (329)
|+||
T Consensus 314 psCs 317 (750)
T TIGR01371 314 TSCS 317 (750)
T ss_pred CCCC
Confidence 9997
No 6
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=2.8e-62 Score=459.50 Aligned_cols=288 Identities=18% Similarity=0.325 Sum_probs=249.6
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++|+++| |||| ++|++|+++||+|++|.++|+++.+++++++|+.|+++|||+|||||||| |+|+|..
T Consensus 3 ~~tt~VGS~Prp---~~Lk~a~e~~~~g~i~~~~l~~~~~~a~~~~v~~Q~~aGlD~itdGe~r~-d~~~~~f------- 71 (326)
T PRK08575 3 IKKALVGSYPRP---VKLAKVISWYNSGKISKEKLEKAINENTKRFFELAKDVGIDYTTDGLFRW-DDIFDPT------- 71 (326)
T ss_pred ceeeeeCCCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeCCCCcch-HHHHHHH-------
Confidence 3678888 9999 99999999999999999999999999999999999999999999999988 6554443
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeec-chhcHHHHHHHHhc----CC--CCC
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYA-SHKAVTEYKEAKGL----GV--ETV 152 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~-~~~~~~~~~~~~~~----~~--~~k 152 (329)
|.+++| +.+.+|+|||++||||++|+++++..+ . .++++++|++++++ +. ..|
T Consensus 72 ---------------~~~~~G---~~~~~~~k~f~~ny~y~~P~v~g~i~~--~~~~~~~~~~~~ak~~~~~~~~~~~~K 131 (326)
T PRK08575 72 ---------------ISFISG---VEKGGLQRFYDNNFYYRQPVIKEKINL--KEENPYLQWLESAREIKEEVSLESKLK 131 (326)
T ss_pred ---------------HHHcCC---cccCceeEecCCCceeeCeEEEeeecC--CCCCccHHHHHHHHHhHhccCCCCCcc
Confidence 333445 345689999999999999999996544 4 35689999999976 22 579
Q ss_pred cEeecHHHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCcc-CCCCChHHHHHHHHHHHHHHc
Q 020229 153 PVLIGPVSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNC 231 (329)
Q Consensus 153 ~~i~GP~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~ 231 (329)
+++|||+|++.++++ ++| .+.++++.+++++|++++++|++ ||++||||||+| +.+++....+.+.++++.+.+
T Consensus 132 ~vl~GP~T~~~~s~~-~~Y---~~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~ 206 (326)
T PRK08575 132 AVLPGPLTYAVLSDN-EYY---KNLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAK 206 (326)
T ss_pred EEEecHHHHHHHhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999988873 444 37899999999999999999999 999999999999 888887788889999999999
Q ss_pred CCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHH
Q 020229 232 GVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRI 310 (329)
Q Consensus 232 ~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri 310 (329)
+++ .++++|+|||.. ..+++.|.++++|+|++|+.+.+.+ +..+.+.++ ++.+++||||++|+.+||+|+|+++|
T Consensus 207 ~~~--~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~~~-l~~~~~~~~-~k~l~~GviD~rn~~vE~~eev~~~i 282 (326)
T PRK08575 207 NVN--IEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENLKK-LGRVYTYLK-GRKVYLGILNARNTKMEKISTIRRIV 282 (326)
T ss_pred cCC--CCEEEECCCCCccccHHHHHhcCCCcEEEEEecCChhH-HHHHHhhCC-CCEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 884 688999999942 2589999999999999999876543 445544333 78999999999999999999999999
Q ss_pred HHHHHhcCCCceEeCCCCC
Q 020229 311 NKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 311 ~~a~~~v~~~~l~ispdCG 329 (329)
+++++ +|+++++++||||
T Consensus 283 ~~~~~-~~~~~l~v~pdcg 300 (326)
T PRK08575 283 NKVKR-KGVSDIIVGNNTL 300 (326)
T ss_pred HHHHh-cCCCeEEEeCCCC
Confidence 99999 9999999999998
No 7
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=5.1e-61 Score=452.35 Aligned_cols=287 Identities=21% Similarity=0.230 Sum_probs=249.7
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
|+|++|| |||| ++|++++++|.+|+++.++|+++++++++++|+.|+++|||+||||||||.||+.+|.+.++++.
T Consensus 3 l~tt~VGS~prp---~~l~~~~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~ 79 (339)
T PRK09121 3 LPTSTAGSLPKP---SWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVD 79 (339)
T ss_pred CCCceecCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceeCCccccchHHHHHHHhCCCce
Confidence 5788888 9999 99999999999999999999999999999999999999999999999999999999998886652
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhc-CCCCCcEeecH
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGL-GVETVPVLIGP 158 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~i~GP 158 (329)
+ .+ .+..+++ +++.|..|.++|++.+ .++..+++|+++++. ..+.|.++|||
T Consensus 80 --~----------------~~------~~~~~~~-~~~~~~~p~v~G~i~~--~~~~~~~~~~~~~~~~~~~vK~~ipgP 132 (339)
T PRK09121 80 --F----------------EK------RETVRIR-DRYDASVPTVVGAVSR--QKPVFVEDAKFLRQQTTQPIKWALPGP 132 (339)
T ss_pred --e----------------ec------CCcceec-ccccCCCCEEEEecCC--CCCCcHHHHHHHHhccCCCceEEeCcH
Confidence 0 00 1122445 6667889999998764 457888999999987 33568899999
Q ss_pred HHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCce
Q 020229 159 VSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 159 ~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (329)
+|++.++.+ +.| .+.++++.|||++|++++++|+++||++||||||+|+... .+..+.+++++|.++++++ ..
T Consensus 133 ~tl~~~~~~-~~Y---~~~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~-~~~~~~~v~~~n~~~~g~~--~~ 205 (339)
T PRK09121 133 MTMIDTLYD-DHY---KSREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFF-DEVNDWGVAALERAIEGLK--CE 205 (339)
T ss_pred HHHHHHhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhh-HHHHHHHHHHHHHHHcCCC--Cc
Confidence 999987763 444 3789999999999999999999999999999999999643 2336778899999999997 67
Q ss_pred eEEeecccCh------------------HHHHHHHHhCCCcEEEEEcCCC--chhHHHHhhhcccCCCeeeeeeecCCCC
Q 020229 239 IHTHMCYSNF------------------NDIIHSIIDMDADVITIENSRS--DEKLLSVFREGVKYGAGIGPGVYDIHSP 298 (329)
Q Consensus 239 i~lH~C~Gn~------------------~~i~~~l~~~~~d~~~lE~~~~--~~~~l~~l~~~~~~~~~i~~Gvvd~~~~ 298 (329)
+++|+||||+ .++++.|.++++|+|++||++. .+++++.++ ++.|++||||++++
T Consensus 206 v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~-----~~~v~lGvvd~k~~ 280 (339)
T PRK09121 206 TAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHNSRVPMDLLELIR-----GKKVMVGAIDVASD 280 (339)
T ss_pred eEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCCCEEEEEecCCCCCcHHHHhcc-----cCeEEeeeEeCCCC
Confidence 8999999986 4899999999999999999864 467887774 68899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 299 RIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 299 ~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
.+|++|+|++||++|++++|++||++|||||
T Consensus 281 ~lE~~e~I~~rI~~a~~~v~~~~l~lspdCG 311 (339)
T PRK09121 281 TIETPEEVADTLRKALQFVDADKLYPCTNCG 311 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHEEECCCCC
Confidence 9999999999999999999999999999999
No 8
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-60 Score=443.80 Aligned_cols=327 Identities=59% Similarity=0.934 Sum_probs=300.1
Q ss_pred CceeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 1 ~~t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
|.+|++||||+|++||||+|.|.||.|+.|.++|.++..+.+.++|+.|.++|+++|+++.|+.||.+||++.+||.+|.
T Consensus 2 ~~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~ 81 (765)
T KOG2263|consen 2 MASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPP 81 (765)
T ss_pred cccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHH
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVS 160 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~t 160 (329)
|++...|+.++++||+|+||..++++++|+||||+||||++|++.....|++..+..+++|+++|++|+.++|++.||+|
T Consensus 82 RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~lGi~T~PVLvGPvs 161 (765)
T KOG2263|consen 82 RYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKALGIDTVPVLVGPVS 161 (765)
T ss_pred ccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhcCCcccceeecchh
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeE
Q 020229 161 YLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIH 240 (329)
Q Consensus 161 l~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (329)
++++++...+-......-+|+..+.++|.+.+..|..||+.|||||||.|.+|++.+.+++|.++|..+-+.+. ...+.
T Consensus 162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~-~~~v~ 240 (765)
T KOG2263|consen 162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLS-GLNVL 240 (765)
T ss_pred hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhcc-cccee
Confidence 99888754443222356789999999999999999999999999999999999999999999999998887665 36788
Q ss_pred EeecccChHH-HHHHHHhCC-CcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcC
Q 020229 241 THMCYSNFND-IIHSIIDMD-ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 318 (329)
Q Consensus 241 lH~C~Gn~~~-i~~~l~~~~-~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~ 318 (329)
+.++||+... .++.|..++ +.++++|+.+.++..- .+...++.++.+..||||.++..-.+...-.+.+.++...+|
T Consensus 241 l~TYF~~v~~~a~~~lk~L~~v~~~~~D~VR~~e~lD-~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG 319 (765)
T KOG2263|consen 241 LATYFADVPAEAYKTLKSLKGVTAFGFDLVRGPETLD-LVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVG 319 (765)
T ss_pred ehhhhccCCHHHHHHHhCCcceeeeeeeeeechhhHH-HHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhc
Confidence 9999998754 489999997 9999999999766433 233246679999999999999999999988899999999999
Q ss_pred CCceEeCCCCC
Q 020229 319 TNILWVNPDLH 329 (329)
Q Consensus 319 ~~~l~ispdCG 329 (329)
++++.+++.|.
T Consensus 320 ~dkvvVstS~S 330 (765)
T KOG2263|consen 320 KDKVVVSTSCS 330 (765)
T ss_pred cceEEEeechh
Confidence 99999999994
No 9
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=9.3e-59 Score=441.48 Aligned_cols=297 Identities=14% Similarity=0.230 Sum_probs=244.9
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++|+++| |||| ++|++|+++|.+|++|.++|+++++++++++|+.|+++|||+||||||||.+|++||.+.++++-
T Consensus 8 ~~tt~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldvitDGE~rR~~w~~df~~~l~Gv~ 84 (368)
T PRK06520 8 FRADVVGSFLRP---AAIKQARQQFAAGEIDAAALRKIEDMEIRKVVEKQRACGLKVVTDGEFRRAWWHFDFFDGLQGVE 84 (368)
T ss_pred CCcceeccCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccccceeeehhhhcCCee
Confidence 3577788 9999 99999999999999999999999999999999999999999999999999877888888776652
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhc--CCCCCcEeec
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGL--GVETVPVLIG 157 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~i~G 157 (329)
++.... ++ .+++++..+..|.++|++++. ..++++++|+++++. +.+.|.++||
T Consensus 85 -~~~~~~---------------------g~-~f~~~~~~~~~~~v~G~I~~~-~~~~~~~~~~~l~~~~~~~~~K~~ipg 140 (368)
T PRK06520 85 -RYEAEQ---------------------GI-QFNGVQTKARGVRVTGKLDFP-DDHPMLEDFRFLKSISGDATPKMTIPS 140 (368)
T ss_pred -eecccC---------------------ce-eecCcccccCCeEEEEEecCC-CCCchHHHHHHHHhhccCCCCCEEcCc
Confidence 211100 11 122233345678999977653 246789999999976 2346889999
Q ss_pred HHHHHhhc---CCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC-------------hHH-HH
Q 020229 158 PVSYLLLS---KPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD-------------SHK-LH 220 (329)
Q Consensus 158 P~tl~~~~---~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~-------------~~~-~~ 220 (329)
|+|++++. ...+.|| .+.++++.|||++|++++++|+++||++||||||+|+..++ .+. .+
T Consensus 141 P~~l~~~~~~~~~~~~~Y--~~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~ 218 (368)
T PRK06520 141 PSVLHFRGGRKAIDATVY--PDLDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELAR 218 (368)
T ss_pred HHHHHhhccccccchhcC--CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHH
Confidence 99998541 1123344 47899999999999999999999999999999999887332 222 35
Q ss_pred HHHHHHHHHHcCCCCCceeEEeecccChH----------HHHHHHH-hCCCcEEEEEcCCC---chhHHHHhhhcccCCC
Q 020229 221 AFIHSFRITNCGVQDTTQIHTHMCYSNFN----------DIIHSII-DMDADVITIENSRS---DEKLLSVFREGVKYGA 286 (329)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~----------~i~~~l~-~~~~d~~~lE~~~~---~~~~l~~l~~~~~~~~ 286 (329)
.+++++|.+++++|.++.+++|+||||+. ++++.|+ ++++|++++|+++. ++++|+.+.. .++
T Consensus 219 ~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~vd~~~lE~~~~r~g~~e~L~~l~~---~~k 295 (368)
T PRK06520 219 IYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVNVDAFFLEYDNERAGGFEPLRFIPP---GHQ 295 (368)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhcCCCeEEEEeccCCCCCcchHHHhhh---cCC
Confidence 67799999999999888899999999975 8999975 79999999999853 3588888763 257
Q ss_pred eeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 287 GIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 287 ~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
.|++||||++++.+|++|+|++||++|++++|++||++|||||
T Consensus 296 ~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCG 338 (368)
T PRK06520 296 QVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCG 338 (368)
T ss_pred EEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccC
Confidence 8999999999999999999999999999999999999999998
No 10
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-58 Score=439.63 Aligned_cols=298 Identities=19% Similarity=0.219 Sum_probs=242.5
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 2 ~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
+++++| |||| ++|++|+++|.+|++|.++|+++++++++++|+.|+++|||+||||||||.||++||.+.++++..
T Consensus 10 ~~~~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~~ 86 (372)
T PRK06233 10 RFDIVGSFLRP---ERLKEAREQFAIGEISQDQLLKIQHAEIKRLVKEQVELGLKAVTDGEFNRSWWHLDFLWGLNGVGK 86 (372)
T ss_pred ccceEeeCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCcCCccHHHHHHhhcCceEe
Confidence 467777 9999 999999999999999999999999999999999999999999999999999999999999887631
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhc---CCCCCcEeec
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGL---GVETVPVLIG 157 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~i~G 157 (329)
+ .. ..++ .+. ..+..+..|.++|++.+. ..++++++|+++++. +...|.++||
T Consensus 87 ~-~~-------~~~~-------~~~--------~~~~~~~~~~v~g~i~~~-~~~p~~~~~~~~~~~~~~~~~~K~tipg 142 (372)
T PRK06233 87 Y-EY-------EDSY-------KFH--------GAKTRTDNAELAGKVAFN-PDHPFFAAFKYLKSIVPEGVLPKQTIPS 142 (372)
T ss_pred e-cC-------ccee-------eec--------CCcCCCCCCEEEEeeccC-CCCchHHHHHHHHhhhcCCCceEEEecC
Confidence 1 00 0000 000 001123458888876652 246778999999986 2345889999
Q ss_pred HHHHHhhcCC--CCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC----------h-----HHHH
Q 020229 158 PVSYLLLSKP--AKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD----------S-----HKLH 220 (329)
Q Consensus 158 P~tl~~~~~~--~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~----------~-----~~~~ 220 (329)
|+|++.+... .+.|| .+.++++.|||++|++++++|+++||++||||||+++...+ . ...+
T Consensus 143 P~~l~~~~~~~~~~~~Y--~~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
T PRK06233 143 PSLLFRDNRSDNWPKFY--DSWDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAE 220 (372)
T ss_pred cHHhccCcccccccccC--CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHH
Confidence 9999854321 13355 47899999999999999999999999999999999775221 0 1114
Q ss_pred HHHHHHHHHHcCCCCCceeEEeecccChH----------HHHHHHHhCCCcEEEEEcCCC---chhHHHHhhhcccCCCe
Q 020229 221 AFIHSFRITNCGVQDTTQIHTHMCYSNFN----------DIIHSIIDMDADVITIENSRS---DEKLLSVFREGVKYGAG 287 (329)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~----------~i~~~l~~~~~d~~~lE~~~~---~~~~l~~l~~~~~~~~~ 287 (329)
.+++++|.+++++|.++.|++|+|||||. ++++.|.++++|+|++||++. ++++++.+.. .+.++.
T Consensus 221 ~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~-~~~~k~ 299 (372)
T PRK06233 221 DAVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWN-NRDNVR 299 (372)
T ss_pred HHHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhc-cCCCCE
Confidence 46779999999999889999999999986 899999999999999999853 3566766642 233689
Q ss_pred eeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 288 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 288 i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
|++||||++++.+|++|+|++||++|++++|++||++|||||
T Consensus 300 v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCG 341 (372)
T PRK06233 300 IVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCG 341 (372)
T ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCC
Confidence 999999999999999999999999999999999999999998
No 11
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=1.3e-56 Score=459.21 Aligned_cols=294 Identities=35% Similarity=0.502 Sum_probs=255.2
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++|++|| |||| ++|++|+++|++|+||.++|+++++++++++|+.|+++|||+||||||+|.||+.+|.+.+.++-
T Consensus 428 ~~tt~IGSfPrp---~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Qe~~GlDvltdGE~~R~d~v~~F~~~l~Gf~ 504 (758)
T PRK05222 428 LPTTTIGSFPQT---TEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQEELGLDVLVHGEFERNDMVEYFGEQLDGFA 504 (758)
T ss_pred CcccccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCceeeeehHHHHHHhCCCee
Confidence 3577777 9999 89999999999999999999999999999999999999999999999999999999998776541
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhc-CCCCCcEeecH
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGL-GVETVPVLIGP 158 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~i~GP 158 (329)
+...++.++|++. .++.|.+.|++.+ ..+..++++++++++ +.+.|+++|||
T Consensus 505 ------------------------~~~~g~v~~~g~~-~~r~p~i~G~i~~--~~p~~v~~~~~aq~~t~~~vK~~ltGP 557 (758)
T PRK05222 505 ------------------------FTQNGWVQSYGSR-CVKPPIIYGDVSR--PEPMTVEWIKYAQSLTDKPVKGMLTGP 557 (758)
T ss_pred ------------------------ecCCceeeeeCCc-CCCCCeeeCCCcC--CCCCchHHHHHHHhccCCCCcEEEecH
Confidence 0112444566544 5577888898765 334448999999987 44679999999
Q ss_pred HHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCCh------HHHHHHHHHHHHHHcC
Q 020229 159 VSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDS------HKLHAFIHSFRITNCG 232 (329)
Q Consensus 159 ~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~------~~~~~~~~~~~~~~~~ 232 (329)
+|++.++.. ..| .++++++.++|.+|++++++|+++||++||||||+|...+.. +.++.+++++|.++++
T Consensus 558 ~T~~~~s~~-r~~---~~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~ 633 (758)
T PRK05222 558 VTILNWSFV-RDD---QPREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSG 633 (758)
T ss_pred HHHHHHHhc-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcC
Confidence 999988874 333 378999999999999999999999999999999999876531 2347788999999999
Q ss_pred CCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHH
Q 020229 233 VQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 312 (329)
Q Consensus 233 ~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~ 312 (329)
++.++.+++|+||||+.++++.|.++++|+|++|+++++.++++.|++ ...++.|++||||++|+.+|++|+|++||++
T Consensus 634 ~~~~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~-~~~~~~iglGVvd~~s~~ves~eei~~rI~~ 712 (758)
T PRK05222 634 VKDETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFED-FGYPNEIGPGVYDIHSPRVPSVEEIEELLRK 712 (758)
T ss_pred CCCCCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhc-cCCCCeEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 988899999999999999999999999999999999888889999975 2335789999999999999999999999999
Q ss_pred HHHhcCCCceEeCCCCC
Q 020229 313 MLAVLETNILWVNPDLH 329 (329)
Q Consensus 313 a~~~v~~~~l~ispdCG 329 (329)
+++++|++|+|+|||||
T Consensus 713 a~~~v~~e~l~v~PdCG 729 (758)
T PRK05222 713 ALEVIPAERLWVNPDCG 729 (758)
T ss_pred HHHhCChheEEEeCCCC
Confidence 99999999999999999
No 12
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=1.7e-56 Score=456.00 Aligned_cols=295 Identities=48% Similarity=0.630 Sum_probs=255.9
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++|++|| |||| ++|++++++|.+|+||.++|+++++++++++|+.|+++|||+||||||+|.||+.+|.+.++++-
T Consensus 433 lptT~IGSfPrp---~~lr~ar~~~~~G~i~~e~~~~~~~~aI~~~V~~Qe~~GlDvltdGE~~R~dmv~~F~e~L~Gf~ 509 (766)
T PLN02475 433 LPTTTIGSFPQT---VELRRVRREYKAKKISEEDYVKAIKEEIAKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA 509 (766)
T ss_pred CCCccccCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeecCceeccchHHHHHHhCCCee
Confidence 4688888 9999 99999999999999999999999999999999999999999999999999999999998776551
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcC-CCCCcEeecH
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLG-VETVPVLIGP 158 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~i~GP 158 (329)
++..++.++|++. .|+.|.|.|++++ ..++.++++++++++. .+.|++||||
T Consensus 510 ------------------------~~~~g~v~~~g~~-~~r~p~i~G~I~~--~~~~~v~~~~~aq~~t~~~vK~~ltGP 562 (766)
T PLN02475 510 ------------------------FTANGWVQSYGSR-CVKPPIIYGDVSR--PKAMTVFWSSVAQSMTKRPMKGMLTGP 562 (766)
T ss_pred ------------------------ecCCceEEeeCCc-CCCCCeEeccccC--CCCCCHHHHHHHHhccCCccceEEecH
Confidence 1122455666544 4567889998765 4578899999998763 3568899999
Q ss_pred HHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC------hHHHHHHHHHHHHHHcC
Q 020229 159 VSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD------SHKLHAFIHSFRITNCG 232 (329)
Q Consensus 159 ~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~------~~~~~~~~~~~~~~~~~ 232 (329)
+|++.++.. ..| .++++++.++|.+|++++++|+++||++||||||+|...+. .+.++.++++++.+.++
T Consensus 563 ~Ti~~~s~~-r~~---~~~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~ 638 (766)
T PLN02475 563 VTILNWSFV-RND---QPRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCG 638 (766)
T ss_pred HHHHhhhhc-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhc
Confidence 999988874 444 36899999999999999999999999999999999986543 12347778999999999
Q ss_pred CCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHH
Q 020229 233 VQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 312 (329)
Q Consensus 233 ~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~ 312 (329)
+++++.+++|+||||+.++++.|.++++|+|++|+++++.+.++.|++.++.++.|++||||++|+.+|++|+|++||++
T Consensus 639 v~~~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~ 718 (766)
T PLN02475 639 VQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 718 (766)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 97778999999999999999999999999999999988777777775434557899999999999999999999999999
Q ss_pred HHHhcCCCceEeCCCCC
Q 020229 313 MLAVLETNILWVNPDLH 329 (329)
Q Consensus 313 a~~~v~~~~l~ispdCG 329 (329)
+++++|++|+|+|||||
T Consensus 719 a~~~v~~e~l~vnPDCG 735 (766)
T PLN02475 719 MLAVLESNILWVNPDCG 735 (766)
T ss_pred HHHhCCcceEEEcCCCC
Confidence 99999999999999999
No 13
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-55 Score=408.32 Aligned_cols=294 Identities=35% Similarity=0.482 Sum_probs=258.8
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++|+++| |||| ++|++|+++|.+|+++.++++++++++++++++.|+++|||++|||||+|+||+-+|++.+.++-
T Consensus 5 ~~tt~iGSfPr~---~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~~ 81 (330)
T COG0620 5 LPTTVIGSFPRP---EELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDVLVDGEFERNDMVEYFAEKLDGVK 81 (330)
T ss_pred CcccccCCCCCC---hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEecCCceeecHHHHHHHHHcCCee
Confidence 4677888 9999 99999999999999999999999999999999999999999999999999999988887765441
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcC-CCCCcEeecH
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLG-VETVPVLIGP 158 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~i~GP 158 (329)
++..++.++|++ ..|+.|.+.|++++ ..++.++++.++++.. .+.|.+||||
T Consensus 82 ------------------------~~~~~~v~~~~~-~~~r~p~i~g~v~~--~~~~~v~~~~~a~~~~~~~~K~~ltGP 134 (330)
T COG0620 82 ------------------------FTQNGWVRSYGS-RCYRPPIIIGDVSR--PEPMTVEEFLYAQSLTEKPVKGMLTGP 134 (330)
T ss_pred ------------------------eccCCcEEEecc-EEeeCceEeccccc--CCCCcchhhhhhhhccCccceeeeccH
Confidence 223467777877 68899999998776 5678999999999753 3457779999
Q ss_pred HHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCCh----HHHHHHHHHHHHHHcCCC
Q 020229 159 VSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDS----HKLHAFIHSFRITNCGVQ 234 (329)
Q Consensus 159 ~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~----~~~~~~~~~~~~~~~~~~ 234 (329)
+|++.++.. . || .+.++++.++|.+|++++++|.++||++||+|||+|...++. +.++.+.+++|.++++++
T Consensus 135 ~ti~~~s~~-~-~~--~~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 210 (330)
T COG0620 135 VTILLWSFN-R-YY--ISREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAVEAINLAAAGVG 210 (330)
T ss_pred HhhHhhhcc-c-cC--CCHHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccccchHHHHHHHHHHHHHHhcCC
Confidence 999999874 3 43 378999999999999999999999999999999999986532 246788999999999988
Q ss_pred CCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHH
Q 020229 235 DTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 314 (329)
Q Consensus 235 ~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~ 314 (329)
.++.|++|+|+|++..+++.+.++++|++++|..++..+.++.+.. +..++.+++||+|++++.+|++++|++++++++
T Consensus 211 ~d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~-~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~ 289 (330)
T COG0620 211 ADTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEE-VKYDKEIGLGVVDIHSPKVESVEEIAARIRKAL 289 (330)
T ss_pred CCcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHh-ccCCCeeecceEecCCCCcCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999866557777764 225789999999999999999999999999999
Q ss_pred HhcCCCceEeCCCCC
Q 020229 315 AVLETNILWVNPDLH 329 (329)
Q Consensus 315 ~~v~~~~l~ispdCG 329 (329)
+++|++++|+|||||
T Consensus 290 ~~~~~e~~~vnPDCG 304 (330)
T COG0620 290 ERVPPERLYVNPDCG 304 (330)
T ss_pred HhCChheEEEcCCCC
Confidence 999999999999998
No 14
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=1.3e-54 Score=443.92 Aligned_cols=295 Identities=37% Similarity=0.541 Sum_probs=250.9
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++|++|| |||| .+|++|+++||+|++|.++|+++++++++++|+.|+++|||+||||||+|+|||.+|...+
T Consensus 422 ~~tt~vGSfPr~---~~lk~are~~~~G~is~eel~~~~~~~i~~~i~~Qe~aGLDvi~~GEf~r~D~v~~F~e~L---- 494 (750)
T TIGR01371 422 LPTTTIGSFPQT---PEVRKARAAYRKGEISEEEYEKFIKEEIKKVIKIQEELGLDVLVHGEFERNDMVEYFGEKL---- 494 (750)
T ss_pred CcCcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCeeeecHHHHHhhcC----
Confidence 3677888 9999 7899999999999999999999999999999999999999999999999999997666433
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcC-CCCCcEeecH
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLG-VETVPVLIGP 158 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~i~GP 158 (329)
++||.+.+| +.+.|++. .+.+|+|.+++.+ ..++.+++++++++++ .+.|++|+||
T Consensus 495 ------------~G~~~~~~G--------~v~~~g~~-~v~~P~i~g~v~~--~~~~~v~~~~~aq~lt~~~vK~~LtGP 551 (750)
T TIGR01371 495 ------------AGFAFTQNG--------WVQSYGSR-CVRPPIIYGDVSR--PKPMTVKWSVYAQSLTSKPVKGMLTGP 551 (750)
T ss_pred ------------CcEEEecCc--------ceeecCCc-CCCCCEEeCCCCC--CCCCchHHHHHHHhccCCCCceEEech
Confidence 244444443 32334333 4678999998754 3456689999999885 5679999999
Q ss_pred HHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC---h---HHHHHHHHHHHHHHcC
Q 020229 159 VSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD---S---HKLHAFIHSFRITNCG 232 (329)
Q Consensus 159 ~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~---~---~~~~~~~~~~~~~~~~ 232 (329)
+|++.++.. ..+ .++++++.+|+.+|++++++|.++||++||||||+|..+++ . +.++.+.+++|.++++
T Consensus 552 vT~l~~s~~-r~d---~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~ 627 (750)
T TIGR01371 552 VTILNWSFV-RDD---IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSG 627 (750)
T ss_pred HHHHhhhhh-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhC
Confidence 999988874 222 37899999999999999999999999999999999998764 1 2236678889999999
Q ss_pred CCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHH
Q 020229 233 VQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 312 (329)
Q Consensus 233 ~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~ 312 (329)
++.+..+++|+||||+.++++.|.++++|+|++|+++++.+.++.+.+....++.+++||||++|+.+|++|++++++++
T Consensus 628 v~~~~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~ 707 (750)
T TIGR01371 628 VKDETQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEK 707 (750)
T ss_pred CCCCCEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 98678999999999999999999999999999999988778888886311234679999999999999999999999999
Q ss_pred HHHhcCCCceEeCCCCC
Q 020229 313 MLAVLETNILWVNPDLH 329 (329)
Q Consensus 313 a~~~v~~~~l~ispdCG 329 (329)
+++++|++|+|||||||
T Consensus 708 a~~~i~~erl~vsPdCG 724 (750)
T TIGR01371 708 ALQVLPAERLWVNPDCG 724 (750)
T ss_pred HHHhcCcceEEEeCCCC
Confidence 99999999999999998
No 15
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=2.4e-54 Score=407.81 Aligned_cols=288 Identities=25% Similarity=0.381 Sum_probs=247.0
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++|+++| |||| .+|++|+++||+|+++.++|+++.+++++.+++.|+++|+|+||||||||.||+.+|...+.++
T Consensus 9 ~~~t~vGS~Prp---~~l~~a~~~~~~g~~~~~~l~~~~~~a~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~G~- 84 (330)
T PRK04326 9 LPTTVVGSYPKP---KWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIEGF- 84 (330)
T ss_pred CcCccccCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCCce-
Confidence 4688899 9999 7899999999999999999999999999999999999999999999999998775555433211
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhc--CCCCCcEeec
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGL--GVETVPVLIG 157 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~i~G 157 (329)
...+.++||++|| |.+|++.++.+ ...+.++++++++++. +...|++++|
T Consensus 85 -------------------------~~~~~~~~~~~~~-~~~P~v~g~~~--~~~~~~l~~~~~~~~~~~~~~vk~~l~G 136 (330)
T PRK04326 85 -------------------------KFYGPVRVWGNNY-FRKPSVVGKIE--YKEPMLVDEFEFAKSVTYTRPVKVPITG 136 (330)
T ss_pred -------------------------eccCceecccccc-ccCCeEEEecc--CCCCCcHHHHHHHHhcccCCCceEeccC
Confidence 1124578899886 77899988554 3457889999999987 4567899999
Q ss_pred HHHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCc
Q 020229 158 PVSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTT 237 (329)
Q Consensus 158 P~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (329)
|+|++.++. +..| .+.++++.++++++++++++|.++||++||||||+++.. ++.++.+.+++|++.+++. .
T Consensus 137 P~Tla~~~~-~~~y---~~~~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~--~~~~~~~~~~l~~~~~~~~--~ 208 (330)
T PRK04326 137 PYTIAEWSF-NEYY---KDKEELVFDLAKVINEEIKNLVEAGAKYIQIDEPALATH--PEDVEIAVEALNRIVKGIN--A 208 (330)
T ss_pred HHHHHhhcc-cccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhcC--HHHHHHHHHHHHHHHhCCC--C
Confidence 999997665 3433 267899999999999999999999999999999999873 4556778899999999884 6
Q ss_pred eeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 238 QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 238 ~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
.++||+||||+.++++.|.++++|+|++|+++...+.++.+.+. ..++.+++||||++++.+|++|+|+++++++++++
T Consensus 209 ~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~~~~~~~l~~~~~~-~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~ 287 (330)
T PRK04326 209 KLGLHVCYGDYSRIAPYILEFPVDQFDLEFANGNYKLLDLLKEY-GFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYV 287 (330)
T ss_pred EEEEEEeCCCcHHHHHHHHhCCCCEEEEEeCCCCchhHHHhhcc-CCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999987665667777542 22789999999999999999999999999999999
Q ss_pred CCCceEeCCCCC
Q 020229 318 ETNILWVNPDLH 329 (329)
Q Consensus 318 ~~~~l~ispdCG 329 (329)
+++++++||+||
T Consensus 288 ~~~~~~lsp~Cg 299 (330)
T PRK04326 288 PPEKLYINPDCG 299 (330)
T ss_pred ChhhEEECCCCC
Confidence 999999999998
No 16
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=1.3e-53 Score=397.22 Aligned_cols=285 Identities=18% Similarity=0.260 Sum_probs=237.2
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccc-cCCCcccchhHHhhhhhcCCc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYI-PSNTFSYYDQVLDTTAMLGAV 78 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~i-tdGe~~~~d~~ld~~~~~~~~ 78 (329)
++|+++| ||+| +++.++. ++++. .+++.+..+++++.+|+.|+++|||+| +|||++|+|++-.|...+
T Consensus 4 l~TT~iGS~P~p---~~~~~~~---~~~~~-~~~~~e~~~~ai~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l--- 73 (343)
T PRK01207 4 LITQEIGSFRKP---EYLSREF---HKIEG-TDKFYELAERATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERI--- 73 (343)
T ss_pred ccccccCCCCCC---HHHHHHH---hccCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhc---
Confidence 4788899 9999 6766665 44554 677878888899999999999999998 799999999664444333
Q ss_pred cCCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcC-CCCCcEeec
Q 020229 79 PPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLG-VETVPVLIG 157 (329)
Q Consensus 79 ~~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~i~G 157 (329)
.| +...++.+.|++. +|+.|.|.++++. ..+..++++++++++. .+.|.++||
T Consensus 74 ---------------------~G--~~~~g~vr~y~~~-~~r~Pii~g~i~~--~~~~~v~e~~~a~~~t~kpvK~~ltG 127 (343)
T PRK01207 74 ---------------------KG--IIFYGMVRSFDNR-YYRKGSIIDRMER--RSSFHLDEVEFVADNTKKPIKVPITG 127 (343)
T ss_pred ---------------------CC--eEecCeEEEeccc-cccCCeEEeeccC--CCCCcHHHHHHHHHccCCCcEEEecC
Confidence 22 2224677888874 6888999998765 4577899999999873 234777999
Q ss_pred HHHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHC------CCC-eEEecCCccCCCCChHHHHHHHHHHHHHH
Q 020229 158 PVSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAA------GAS-WIQFDEPLLVMDLDSHKLHAFIHSFRITN 230 (329)
Q Consensus 158 P~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~a------G~~-~IQiDEP~l~~~~~~~~~~~~~~~~~~~~ 230 (329)
|+|++.|+.+ ++| .++++++.++|.++++|+++|.++ ||. +||||||+|+.. .+.++.+++++|.+.
T Consensus 128 P~Ti~~~S~~-~~Y---~~~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~~--~~~l~~av~a~n~~~ 201 (343)
T PRK01207 128 PYTMMDWSFN-DFY---RDRYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTTH--PDEMDIVVDSINKSV 201 (343)
T ss_pred HHHHHHHhcc-ccc---CCHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCCC--hHHHHHHHHHHHHHH
Confidence 9999999873 544 378999999999999999999999 998 799999999753 456677889999999
Q ss_pred cCCCCCceeEEeeccc-ChHHHHHHHHhCCCcEEEEEcCCC-------------chhHHHHhhh---cccCCCeeeeeee
Q 020229 231 CGVQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENSRS-------------DEKLLSVFRE---GVKYGAGIGPGVY 293 (329)
Q Consensus 231 ~~~~~~~~i~lH~C~G-n~~~i~~~l~~~~~d~~~lE~~~~-------------~~~~l~~l~~---~~~~~~~i~~Gvv 293 (329)
++++ ..+++|+||| ++.++++.|.++++|+++||+++. +++.++.|.+ .++.++.|++||+
T Consensus 202 ~gv~--~~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~ 279 (343)
T PRK01207 202 YGID--NEFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVT 279 (343)
T ss_pred hCCC--CcEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeEE
Confidence 9997 3689999999 799999999999999999999843 3567888853 2334668999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhc-CCCceEeCCCCC
Q 020229 294 DIHSPRIPSTEEIADRINKMLAVL-ETNILWVNPDLH 329 (329)
Q Consensus 294 d~~~~~~e~~e~i~~ri~~a~~~v-~~~~l~ispdCG 329 (329)
|++|+.+|++|+|++||+++++++ |++++|++||||
T Consensus 280 D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCG 316 (343)
T PRK01207 280 DVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCG 316 (343)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCC
Confidence 999999999999999999999999 899999999998
No 17
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=1.2e-53 Score=401.97 Aligned_cols=292 Identities=26% Similarity=0.355 Sum_probs=222.0
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
|+|++|| |||| ++|++|+++|.+|++|.++|+++++++++++|+.|+++|||+||||||+|.||+.+|.+.+.++-
T Consensus 1 ~~TT~VGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~~f~~~l~G~~ 77 (324)
T PF01717_consen 1 FPTTVVGSFPRP---EELKEAREAFAKGEISPEELEEIEDEAIADAVKRQEDAGLDVITDGEFRRGDFHSYFAERLDGFG 77 (324)
T ss_dssp S-BB-SSB---S---HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHT-SCBE-BTTT-SSTTHHHHTTSEEEE
T ss_pred CCCcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceecceeccCchhhhhhhhccCce
Confidence 5788888 9999 99999999999999999999999999999999999999999999999999999999998775541
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCC-CCCcEeecH
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGV-ETVPVLIGP 158 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~i~GP 158 (329)
.. . .+....|.+. .+..|.+.++. ....+..++++.+++.... ..|.+++||
T Consensus 78 --~~----------------~------~~~~~~~~~~-~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~vK~~i~gP 130 (324)
T PF01717_consen 78 --DT----------------L------NGDVQSFGER-YYRPPIVVGKI--SRKKPFAVEEFKYAQSLTDKPVKGTITGP 130 (324)
T ss_dssp --EE----------------S------SEEEEEETTE-EEEEEEEEEEE--EESS-SSHHHHHHHHHT-SSSBEEEEE-H
T ss_pred --ee----------------c------cccceecccc-cccceEEeccc--ccCCcchhHHHHHHHhccccccccccCHH
Confidence 00 0 0111123222 44567777754 3356777888888886632 358889999
Q ss_pred HHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHH------HHH--HHHHHHHHH
Q 020229 159 VSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHK------LHA--FIHSFRITN 230 (329)
Q Consensus 159 ~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~------~~~--~~~~~~~~~ 230 (329)
+|++..+.. . || .+.++++.+++++|++++++|+++||++||||||.|........ +.. ..+++|.+.
T Consensus 131 ~tl~~~~~~-~-~y--~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (324)
T PF01717_consen 131 STLADPSAN-R-YY--KDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAV 206 (324)
T ss_dssp HHHHHTSEE-S-SS--S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhchhcc-c-cC--CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhcc
Confidence 999877663 3 33 37899999999999999999999999999999998876553221 111 234566666
Q ss_pred cCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHH
Q 020229 231 CGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRI 310 (329)
Q Consensus 231 ~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri 310 (329)
++. ++.+++|+|+||+...++.|.++++|+|++|+++.....++.|.+ ++.++.+++||||++++.+|++|+|++||
T Consensus 207 ~~~--~~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri 283 (324)
T PF01717_consen 207 KGE--DATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRI 283 (324)
T ss_dssp STT--TSEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHH
T ss_pred CCC--CCEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHH
Confidence 554 589999999999988889999999999999999866566677765 56799999999999999999999999999
Q ss_pred HHHHHhcCCCceEeCCCCC
Q 020229 311 NKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 311 ~~a~~~v~~~~l~ispdCG 329 (329)
++++++++++|+++|||||
T Consensus 284 ~~a~~~~~~~~l~~sPdCG 302 (324)
T PF01717_consen 284 EEALEYVPLEQLWLSPDCG 302 (324)
T ss_dssp HHHHTTS-GGGEEEEESST
T ss_pred HHHHhcCccccEEEcCCCC
Confidence 9999999999999999999
No 18
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=3.8e-53 Score=399.96 Aligned_cols=291 Identities=30% Similarity=0.384 Sum_probs=228.5
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 2 ~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
+|+++| |||| ++|++|++++.+|+++.++|+++++++++++|+.|+++|||+||||||||.||+.+|.+.++++..
T Consensus 1 ~tt~vGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~v~~Q~~~GldiitDGe~~r~~~~~~f~~~l~G~~~ 77 (332)
T cd03311 1 PTTTVGSFPRP---KELREARAKFKKGEISAEELREAEDDAIADAVKDQEEAGLDVVTDGEFRRSDMVEYFLERLDGFEF 77 (332)
T ss_pred CCceecCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccccHHHHHHHhCCceee
Confidence 356666 9999 999999999999999999999999999999999999999999999999999999999987765520
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcC--CCCCcEeecH
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLG--VETVPVLIGP 158 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~i~GP 158 (329)
.+..+++ .|..|..|.+.+++.. ..+..+.+++++++.. ...|++++||
T Consensus 78 --------------------------~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lk~~l~GP 128 (332)
T cd03311 78 --------------------------TGWVQSY-GSRYYKPPGIVGDVSR--RPPMTVEEGKIAQSLTHPKPLKGILTGP 128 (332)
T ss_pred --------------------------ccceeee-ccceeeCCeeeccccc--CCCCeEEEEEEeccCCCCccccccCCCC
Confidence 1122334 3335666777664322 1223333444444331 2457889999
Q ss_pred HHHHhhcCCCCC--ccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCCh---HHH-HHHHHHHHHHHcC
Q 020229 159 VSYLLLSKPAKG--VAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDS---HKL-HAFIHSFRITNCG 232 (329)
Q Consensus 159 ~tl~~~~~~~~~--y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~---~~~-~~~~~~~~~~~~~ 232 (329)
+|++.++.. .. +| .+.++++++++++|++++++|+++||++||||||+++..++. +.. +.+..+++.+. +
T Consensus 129 ~Tla~~~~~-~~~~~y--~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~-~ 204 (332)
T cd03311 129 VTIPSPSFV-RFRGYY--PSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALA-D 204 (332)
T ss_pred eeECCchhh-cccccC--CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHH-h
Confidence 999877653 22 23 478999999999999999999999999999999999887654 233 33344444444 3
Q ss_pred CCCCceeEEeecccCh----------HHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCC
Q 020229 233 VQDTTQIHTHMCYSNF----------NDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS 302 (329)
Q Consensus 233 ~~~~~~i~lH~C~Gn~----------~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~ 302 (329)
.+.+.++++|+||||+ .++++.|+++++|+|++|+++.....++.+++ ++.++.+++||||++++.+|+
T Consensus 205 ~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~-~~~~k~l~~GvVd~~~~~~e~ 283 (332)
T cd03311 205 RPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKE-LPYDKKVGLGVVDVKSPEVES 283 (332)
T ss_pred CCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHh-CCCCCEEEeeeecCCCCCCCC
Confidence 2335789999999999 78999999999999999998753333444443 234889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 303 TEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 303 ~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
+|+|++|+++++++++++|+++|||||
T Consensus 284 ~e~v~~ri~~~~~~~~~~~l~lsp~CG 310 (332)
T cd03311 284 PEEVKDRIEEAAKYVPLEQLWVSPDCG 310 (332)
T ss_pred HHHHHHHHHHHHhhCCHHHEEECCCCC
Confidence 999999999999999999999999998
No 19
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=6.1e-47 Score=353.53 Aligned_cols=272 Identities=20% Similarity=0.265 Sum_probs=217.5
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
++||++| ||+|.|.++-. +..-.+.+.+++..+++++++|+.|+++|||+||||||| .|++.+|.+.+.++
T Consensus 2 ~~t~~vgs~p~~~~~~~~~------~~~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~r-~~~~~~f~~~l~G~- 73 (305)
T PRK00957 2 MITTVVGSYPVVKGEPETL------KDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQVR-GDMVEIFASNMPGF- 73 (305)
T ss_pred CCcceecCCCCCccchhHH------HHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCcc-CchHHHHHhcCCCc-
Confidence 5799999 99996633222 112267789999999999999999999999999999996 56687777654322
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeec-chhcHHHHHHHHhc------CCCCC
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYA-SHKAVTEYKEAKGL------GVETV 152 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~-~~~~~~~~~~~~~~------~~~~k 152 (329)
. | |.+.+++++ . .++.+++|+++++. +.+.|
T Consensus 74 -------------------------~----------~-----~~vvg~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~vK 111 (305)
T PRK00957 74 -------------------------D----------G-----KRVIGRVEP--PAKPITLKDLKYAKKVAKKKDPNKGVK 111 (305)
T ss_pred -------------------------c----------C-----CeEEEeecC--CCCCCcHHHHHHHHHHHhccCCCCcee
Confidence 0 1 234454443 3 47789999999876 13568
Q ss_pred cEeecHHHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcC
Q 020229 153 PVLIGPVSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCG 232 (329)
Q Consensus 153 ~~i~GP~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~ 232 (329)
++++||+|++.++.. +.||.....++++.+++++|++++++|+++||++||||||+++.++.. .+.+.++++.+.++
T Consensus 112 ~~i~GP~Tla~~~~~-~~~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~--~~~~~~~~~~~~~~ 188 (305)
T PRK00957 112 GIITGPSTLAYSLRV-EPFYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYD--LEVAKKAIDIITKG 188 (305)
T ss_pred EEecCHHHHHhhccc-ccccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCch--HHHHHHHHHHHHHh
Confidence 899999999987775 434421234889999999999999999999999999999999986533 33456778888777
Q ss_pred CCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHH
Q 020229 233 VQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 312 (329)
Q Consensus 233 ~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~ 312 (329)
++ ..+++|+| ||+.++++.|.++++|+|++|++++ .+.++.+++....++.+++||||+++..+|++|+|++++++
T Consensus 189 i~--~~v~lH~C-G~~~~i~~~l~~~~vd~i~ld~~~~-~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~ 264 (305)
T PRK00957 189 LN--VPVAMHVC-GDVSNIIDDLLKFNVDILDHEFASN-KKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEE 264 (305)
T ss_pred hC--CceEEEEC-CCcHHHHHHHHhCCCCEEEEeecCC-CCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 74 67899999 9999999999999999999999764 34566665333447899999999999999999999999999
Q ss_pred HHHhcCCCceEeCCCCC
Q 020229 313 MLAVLETNILWVNPDLH 329 (329)
Q Consensus 313 a~~~v~~~~l~ispdCG 329 (329)
++++++++++++|||||
T Consensus 265 ~~~~~~~~~l~lsp~CG 281 (305)
T PRK00957 265 GIEILGAENILIDPDCG 281 (305)
T ss_pred HHHhcCHHHEEECCCcC
Confidence 99999999999999998
No 20
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=1.1e-43 Score=334.04 Aligned_cols=284 Identities=19% Similarity=0.202 Sum_probs=211.9
Q ss_pred eeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccCC
Q 020229 3 SHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR 81 (329)
Q Consensus 3 t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~r 81 (329)
|+++| |||| .++++|++.||+|+++.+++++..++++.++|+.|+++|+++|||||| |.| ++|.+..+...++|
T Consensus 2 ~t~vGS~P~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~gl~~i~dge~-~~~-~~~~~~~~~~~~~~ 76 (321)
T cd03310 2 ATGIGSYPLP---DGVTKEWSILEKGAIEPEWPEEALFTALGSFFELQLEAGVEVPTYGQL-GDD-MIGRFLEVLVDLET 76 (321)
T ss_pred CCcccCCCCc---hhHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhhcCCcCCCccc-HHH-HHhhHHHHHHHhhc
Confidence 44555 9999 899999999999999999999999999999999999999999999999 554 44444333221111
Q ss_pred CCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHHH
Q 020229 82 YNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSY 161 (329)
Q Consensus 82 ~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~tl 161 (329)
-+|||++||||++|++.++. +.......++.+++++..+...|++++||+|+
T Consensus 77 ---------------------------~~~~~~~n~~y~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~vk~~l~GP~Tl 128 (321)
T cd03310 77 ---------------------------GTRFFDNNFFYRPPEAKIEA-FLPLELDYLEEVAEAYKEALKVKVVVTGPLTL 128 (321)
T ss_pred ---------------------------ccccccccceeccchhcccc-cccccHHHHHHHHHhcCCCCceEEEecCHHhH
Confidence 16899999999999988765 42122223444433332234679999999999
Q ss_pred HhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC--hHHHHHHHHHHHHHHcCCCCCcee
Q 020229 162 LLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD--SHKLHAFIHSFRITNCGVQDTTQI 239 (329)
Q Consensus 162 ~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i 239 (329)
+.++...+.+. .+.++++++++++|++++++|.++||++||||||+++.++. ....+.+.++++.+.++.. ..+
T Consensus 129 a~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~ 204 (321)
T cd03310 129 ALLAFLPNGEP--DAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAGAFEDLEIVDAALEEVSLKSG--GDV 204 (321)
T ss_pred hHhhccccCCc--hHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccccccccccchHHHHHHHHHHHhhccC--Cce
Confidence 98887433221 25789999999999999999999999999999999998774 3344556777777764232 356
Q ss_pred EEeecccChHHHHHHHHhCCCcEEEEEcCCCc---hhHHHHhhhccc-CCCeeeeeeecC----CCCCCCCHHHHHHHHH
Q 020229 240 HTHMCYSNFNDIIHSIIDMDADVITIENSRSD---EKLLSVFREGVK-YGAGIGPGVYDI----HSPRIPSTEEIADRIN 311 (329)
Q Consensus 240 ~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~---~~~l~~l~~~~~-~~~~i~~Gvvd~----~~~~~e~~e~i~~ri~ 311 (329)
++|+| |+ .+++.|.++++|+|++|+.+.. .+.+..+.+. . .++.+++|+||. +|...+ +|.+ .++.
T Consensus 205 ~lHic-~~--~~~~~l~~~~vd~l~~D~~~~~~~~~~~l~~~~~~-g~~~~~lg~gvid~~~~~~~~~~~-~~~~-~~~~ 278 (321)
T cd03310 205 EVHLC-AP--LDYEALLELGVDVIGFDAAALPSKYLEDLKKLLRI-GVRTLILGLVVTDNEAKGRNAWKE-IERL-EKLV 278 (321)
T ss_pred EEEEC-CC--CCHHHHHhCCCCEEEEecccCcccchhHHHHHHhc-CCceEEEEeeecCCcccCCCHHHH-HHHH-HHHH
Confidence 89999 54 5799999999999999998765 2445444321 1 356899999999 888766 3333 3333
Q ss_pred HHHHhcC---CCceEeCCCCC
Q 020229 312 KMLAVLE---TNILWVNPDLH 329 (329)
Q Consensus 312 ~a~~~v~---~~~l~ispdCG 329 (329)
+.++..+ .++++|||+||
T Consensus 279 ~~l~~~~~~~~~~~~vtpscg 299 (321)
T cd03310 279 RRLEEPGEVLDEILYLTPDCG 299 (321)
T ss_pred HHhccchhhhhhceeeCCCcc
Confidence 3334444 48999999998
No 21
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=309.29 Aligned_cols=294 Identities=47% Similarity=0.620 Sum_probs=243.2
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 2 ~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
+|+++| ||.. .+|+.-|.+|.+|+||++++.+.+++++.++|+.|++.|||++..||-.|.|++-
T Consensus 434 PTTTIGSFPQT---kelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQEelgiDVLVHGEpERNDMVe----------- 499 (765)
T KOG2263|consen 434 PTTTIGSFPQT---KELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQEELGIDVLVHGEPERNDMVE----------- 499 (765)
T ss_pred ccccccCCcch---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHHHhCccEEecCCcccccHHH-----------
Confidence 677888 9999 9999999999999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcC-CCCCcEeecHH
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLG-VETVPVLIGPV 159 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~i~GP~ 159 (329)
||-+...+..+...++...|++. ..+.|.|.|+... .....+.+-.++++.. .+.|..++||+
T Consensus 500 -------------yFGEql~GfaFTvNGWVQSYGSR-cVkPPiI~GDvsR--Pk~MtV~~S~~AQs~TsrPmKGMLTgPv 563 (765)
T KOG2263|consen 500 -------------YFGEQLSGFAFTVNGWVQSYGSR-CVKPPIIYGDVSR--PKAMTVFWSSYAQSMTSRPMKGMLTGPV 563 (765)
T ss_pred -------------HHHhhccceEEEecchhHhhcCc-ccCCCeeeccccC--CCcceeeHHHHHHHHhcCcccccccCce
Confidence 33333333334455666555543 2344666776532 2233444445565542 23455699999
Q ss_pred HHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCCh------HHHHHHHHHHHHHHcCC
Q 020229 160 SYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDS------HKLHAFIHSFRITNCGV 233 (329)
Q Consensus 160 tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~------~~~~~~~~~~~~~~~~~ 233 (329)
|++.|+...+. ..+.+-...+|-+++.|+.+|.++|+.+||+|||+|...++- .-+++.+.+++...+++
T Consensus 564 TiL~WSF~R~D----~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgV 639 (765)
T KOG2263|consen 564 TILNWSFVRND----QPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGV 639 (765)
T ss_pred EEEEeccccCC----cchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcchhhHHHHHHHHHHHhhhccccc
Confidence 99988875443 246677888999999999999999999999999999887642 12367788999889999
Q ss_pred CCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHH
Q 020229 234 QDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKM 313 (329)
Q Consensus 234 ~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a 313 (329)
...+.|+.|+||.|+.+|++.|.++++|++++|++++..+.+..|.+.+..+..|++|+.|.+|+++.+.+|+++||.+.
T Consensus 640 qd~TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~ 719 (765)
T KOG2263|consen 640 QDSTQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKM 719 (765)
T ss_pred cccchhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCcCCceecccCCCCCCHHHHHHHHHHH
Confidence 98899999999999999999999999999999999999999999997666788999999999999999999999999999
Q ss_pred HHhcCCCceEeCCCCC
Q 020229 314 LAVLETNILWVNPDLH 329 (329)
Q Consensus 314 ~~~v~~~~l~ispdCG 329 (329)
++.+|.+.+|++||||
T Consensus 720 l~~~~~~~lWvNPDCG 735 (765)
T KOG2263|consen 720 LAVLPQNILWVNPDCG 735 (765)
T ss_pred HHhcccccEEECCCcC
Confidence 9999999999999998
No 22
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.3e-38 Score=292.16 Aligned_cols=267 Identities=19% Similarity=0.255 Sum_probs=196.8
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 2 ~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
.++.+| ||||.+.+. +..+....|+++.++|.+ +++++++.|.++|+|++|+|.|| |++--|+
T Consensus 5 v~~~iGsyP~P~~~~k--~~~~~~~~g~~~~e~l~~----~~~~~~~~q~dAGld~~Tdgqlr--Dm~~~fl-------- 68 (344)
T PRK06052 5 IFDDIGSFPLPEGVTR--EWVENAFETREEDEKLFS----VVRSAFQMKIDAGVQVPTYPQFR--DMIEQFL-------- 68 (344)
T ss_pred EeccCCCCCCCccccH--HHHhhhhcCCCcHHHHHH----HHHHHHHHHHhcCCccccchHHH--HHHHhHH--------
Confidence 356677 999965544 222222368999999988 88999999999999999999999 7442222
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHh-----cCC--CCCc
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKG-----LGV--ETVP 153 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~k~ 153 (329)
...+|.... .-.|.+-+=.. .-.-++.+..+.+ .|. ..|.
T Consensus 69 ---------------~~i~~~~~~-----------~~p~~~~~~~a-------~i~el~~~~~~~~~~~~~~~~~~~VKv 115 (344)
T PRK06052 69 ---------------DIIRDEKCC-----------EEPYVVKEECA-------KILELEAIEEVAKEYKEETGETLEVRV 115 (344)
T ss_pred ---------------HHHcCCccc-----------CCCeeeehhhh-------hHHHHHHHHHHHHHHHHhhCCCCCeEE
Confidence 112221000 00111111000 0011222222221 132 3477
Q ss_pred EeecHHHHHhhcCCCCCccCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC-hHHHHHHHHHHHHH--
Q 020229 154 VLIGPVSYLLLSKPAKGVAKTFS-LLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD-SHKLHAFIHSFRIT-- 229 (329)
Q Consensus 154 ~i~GP~tl~~~~~~~~~y~~~~~-~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~-~~~~~~~~~~~~~~-- 229 (329)
+++||+|+++++.....|. + .++++.+++++++++++.+.++|+++||||||+|+..+. .-..+..++|+|.+
T Consensus 116 ~iTGP~tL~~~~f~~~~Y~---d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~ 192 (344)
T PRK06052 116 CVTGPTELYLQEFGGTIYT---DILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVAST 192 (344)
T ss_pred EecCHHHHHHHHcCCcccc---chHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHHHh
Confidence 7999999999988544453 5 789999999999999999999999999999999998653 12345567888888
Q ss_pred ---HcCCCCCceeEEeecccChHHHH-HHHHhCC-CcEEEEEcCCCchhHHHHhhhcc--cCCCeeeeeeecC--C----
Q 020229 230 ---NCGVQDTTQIHTHMCYSNFNDII-HSIIDMD-ADVITIENSRSDEKLLSVFREGV--KYGAGIGPGVYDI--H---- 296 (329)
Q Consensus 230 ---~~~~~~~~~i~lH~C~Gn~~~i~-~~l~~~~-~d~~~lE~~~~~~~~l~~l~~~~--~~~~~i~~Gvvd~--~---- 296 (329)
.+|+ ++++++|+ +++ +.+.+++ +|+|++|+++++ +.++.|.+.. ..++.+++||+|+ +
T Consensus 193 ~a~~~gv--dv~i~lH~------~l~~~~i~~~~~idvi~~E~A~~~-~~L~~l~~~~~e~~dk~ig~GV~dtd~~~~~~ 263 (344)
T PRK06052 193 YARKQGA--DVEIHLHS------PLYYELICETPGINVIGVESAATP-SYLDLIDKKVLEDTDTFLRVGVARTDIFSLIA 263 (344)
T ss_pred hhccCCc--ceEEEEeh------HhhHHHHhcCCCCCEEeeeccCCh-HHHHHHhhhhhhhcCCceEEeEEEchhhcchh
Confidence 7777 48999999 467 9999999 999999999877 5667776521 2479999999999 8
Q ss_pred --------------------CCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 297 --------------------SPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 297 --------------------~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
++.+||+|+|+++|+++++++|++++|++||||
T Consensus 264 ~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCG 316 (344)
T PRK06052 264 ILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCG 316 (344)
T ss_pred hhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCC
Confidence 899999999999999999999999999999999
No 23
>PRK06438 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=284.59 Aligned_cols=260 Identities=13% Similarity=0.213 Sum_probs=211.9
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCcc
Q 020229 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (329)
Q Consensus 1 ~~t~~~G-~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~ 79 (329)
+++.++| |||| .++++.+++|..|.++.+++.++.++++.+++..|+++|||.+|||.+||+|++ .+
T Consensus 2 ~~~~~~G~yPrp---~~l~k~l~~~~~G~i~~e~l~~~~~~~~~~~~~~q~~aGld~~tdG~lrWdDi~-------~~-- 69 (292)
T PRK06438 2 VKKLVYGIYPRT---EELRLEYNRWERGLIPDSEINEKINEEKYIFYDKVKDIGIDEYTDPLFNWYDIF-------RP-- 69 (292)
T ss_pred cccccCCCCCCC---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEecCccchHHhh-------hh--
Confidence 4678899 9999 899999999999999999999999999999999999999999999999999943 21
Q ss_pred CCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhc--------CCCC
Q 020229 80 PRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGL--------GVET 151 (329)
Q Consensus 80 ~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 151 (329)
.+....| +..++++|||+||++|+.|++.|+..+ +...++|..+.++ +.+.
T Consensus 70 --------------~~~~~~g---ve~ggL~Ry~dNN~fYR~Pvv~g~l~~----~~~~~~~~~~~e~~~~~~~~~~~~l 128 (292)
T PRK06438 70 --------------ISLSVNG---VSLGPLTRYLETNTFYRIPEISGVKDF----NRELDKFQKIDENPPLPLYHLKKGI 128 (292)
T ss_pred --------------HHHHhcC---ccccceeEEeccCceeecceecCCCCc----chhhHHHHHHHhcccccccCCCCCc
Confidence 1112223 667799999999999999999998765 5677788888764 1234
Q ss_pred CcEeecHHHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCCh-HHHHHHHHHHHHHH
Q 020229 152 VPVLIGPVSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDS-HKLHAFIHSFRITN 230 (329)
Q Consensus 152 k~~i~GP~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~-~~~~~~~~~~~~~~ 230 (329)
|.++|||+||+.++. +++| .+.++|+.++++++.+++++|. ++.|++.||++. .... ...+.+.
T Consensus 129 kavLPGPyT~a~lS~-ne~Y---~d~~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~-~~~~~~~~e~~~------- 193 (292)
T PRK06438 129 SIFLPSPYSFYKMSK-TLEK---IDYNDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY-KNDNYSYLSDLA------- 193 (292)
T ss_pred eEEecCchhHHHhhc-cccc---CCHHHHHHHHHHHHHHHHHhCC---cceEEEecchhc-CCCchhhhhhcc-------
Confidence 889999999999997 3544 3789999999999999999876 899999999988 4332 2232221
Q ss_pred cCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHH
Q 020229 231 CGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRI 310 (329)
Q Consensus 231 ~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri 310 (329)
++..++||++||.-.+++..|+ +++|+| + ..+.+..+.+. .+ .+.+|+||++++.+|++++ ++++
T Consensus 194 ----e~~~v~l~TYf~~~~~~~~~L~-~~vd~i-v-----~~~~l~~v~ey--~~-~v~lGivdarnTkmE~~e~-~~~i 258 (292)
T PRK06438 194 ----KKYNVILITSGNVSKLNFNGLG-HKFESI-V-----RDDEVDYIINK--CS-YPGIKIFSGDNTKMEDLKA-RKEI 258 (292)
T ss_pred ----ccccEEEEEecCCchhhHHhhc-ccceeE-e-----ccchhhhHHhh--cC-CceeeeeecCcccccCHHH-hhhc
Confidence 1467789999998778999999 999999 3 33444455543 24 7999999999999999999 9888
Q ss_pred HHHHHhcCCCceEeCCCCC
Q 020229 311 NKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 311 ~~a~~~v~~~~l~ispdCG 329 (329)
-+.++++++|+|.
T Consensus 259 ------~~~~~v~vt~nt~ 271 (292)
T PRK06438 259 ------SGYDNVLLTHSDY 271 (292)
T ss_pred ------cCcceEEEcCCch
Confidence 4679999999984
No 24
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.93 E-value=8e-25 Score=204.41 Aligned_cols=244 Identities=17% Similarity=0.204 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccCCCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCcee
Q 020229 40 DLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHF 119 (329)
Q Consensus 40 ~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y 119 (329)
++..+++..|. .|+|.+++|| .| + ..++.+.|+ .-|++.|+++
T Consensus 30 ~~~~~~~~~~~-~g~D~~~~~~---~~-~------------------------~~~~ealg~--------~~~~~~~~~p 72 (306)
T cd00465 30 EWGITLVEPEE-IPLDVIPVHE---DD-V------------------------LKVAQALGE--------WAFRYYSQAP 72 (306)
T ss_pred hhhceeecccc-CCCCeeeecC---cc-e------------------------eehhhhcCc--------eEEecCCCCC
Confidence 34455666677 9999999998 11 2 223333342 1255667677
Q ss_pred eeceecCCCceeecchhcHHHHHHHHhcC-CCCCcEeecHHHHHhhcCCCCC-----ccCCCCHHHHHHHHHHHHHHHHH
Q 020229 120 IVPELGPDVKFSYASHKAVTEYKEAKGLG-VETVPVLIGPVSYLLLSKPAKG-----VAKTFSLLSLLPKILPIYKEVIS 193 (329)
Q Consensus 120 ~~P~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~i~GP~tl~~~~~~~~~-----y~~~~~~~~l~~~la~~~~~~i~ 193 (329)
.+|...++. .+...+..+++++.+++.. ...+.+++||+|++.++..... |.+..+.+++++.++++++++++
T Consensus 73 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll~~i~~~~~~~~~ 151 (306)
T cd00465 73 SVPEIDEEE-DPFREAPALEHITAVRSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEYLTEFILEYAK 151 (306)
T ss_pred CCCCcccCC-ChhhHHHHHHHHHHHHhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 777665432 0113356788888888764 3446679999999976653222 21112467899999999999999
Q ss_pred HHHHCCCCeEEecCCccCCC---CChHHHHH-HHHHHHHHHcCCCC-CceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 194 ELKAAGASWIQFDEPLLVMD---LDSHKLHA-FIHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 194 ~l~~aG~~~IQiDEP~l~~~---~~~~~~~~-~~~~~~~~~~~~~~-~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
++.++||++||++||.++.. ++++.++. +.+.++++.+.+.. +.++++|+| |+..++++.|.++++|++++|+.
T Consensus 152 ~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~c-g~~~~~~~~l~~~~~d~~~~d~~ 230 (306)
T cd00465 152 TLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSC-YDAADLLEEMIQLGVDVISFDMT 230 (306)
T ss_pred HHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEEC-CCHHHHHHHHHHhCcceEecccc
Confidence 99999999999999998876 47777755 46788888875432 457899999 87788999999999999999998
Q ss_pred C-CchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 269 R-SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 269 ~-~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
. ...+..+.++ ++..+.|.|++. ....++|+|.++++++++.++. +.+++|+||
T Consensus 231 ~~d~~~~~~~~~-----~~~~i~Ggv~~~-~~~~~~e~i~~~v~~~l~~~~~-~~il~~~cg 285 (306)
T cd00465 231 VNEPKEAIEKVG-----EKKTLVGGVDPG-YLPATDEECIAKVEELVERLGP-HYIINPDCG 285 (306)
T ss_pred cCCHHHHHHHhC-----CCEEEECCCCcc-ccCCCHHHHHHHHHHHHHHhCC-CeEEeCCCC
Confidence 6 4445555554 345555555554 3357779999999999999976 999999998
No 25
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=99.76 E-value=7e-18 Score=159.18 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=142.8
Q ss_pred cHHHHHHHHhc-C--CCCCcEeecHHHHHhhcCCCC-----CccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCC
Q 020229 137 AVTEYKEAKGL-G--VETVPVLIGPVSYLLLSKPAK-----GVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEP 208 (329)
Q Consensus 137 ~~~~~~~~~~~-~--~~~k~~i~GP~tl~~~~~~~~-----~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP 208 (329)
.++..+.+++. + ...+..+.||+|++......+ -|.+....+++++.+++.+.++++++.++|++.||++||
T Consensus 111 ~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~g~~~~~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~ 190 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDP 190 (330)
T ss_pred HHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 45555555433 3 223445899999985443211 122111247889999999999999999999999999999
Q ss_pred ccCCC-CChHHHHHH-HHHHHHHHcCCCC-CceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCC
Q 020229 209 LLVMD-LDSHKLHAF-IHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYG 285 (329)
Q Consensus 209 ~l~~~-~~~~~~~~~-~~~~~~~~~~~~~-~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~ 285 (329)
..+.. ++++.++.+ .+.++++.+.+.. +.++++|+| ||+.++++.+.++++|++++|+..+..+..+.+. +
T Consensus 191 ~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~c-G~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g-----~ 264 (330)
T cd03465 191 WASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNC-GDTAPILELMADLGADVFSIDVTVDLAEAKKKVG-----D 264 (330)
T ss_pred ccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEEC-CCchhHHHHHHHhCCCeEeecccCCHHHHHHHhC-----C
Confidence 87654 477777543 4556666655532 357899999 9999999999999999999998875556666665 5
Q ss_pred CeeeeeeecCC-CCCCCCHHHHHHHHHHHHHhcCC--CceEeCCCCC
Q 020229 286 AGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLET--NILWVNPDLH 329 (329)
Q Consensus 286 ~~i~~Gvvd~~-~~~~e~~e~i~~ri~~a~~~v~~--~~l~ispdCG 329 (329)
+.++.|.||+. ....+|+|+|+++++++++.+.. .+.++||+||
T Consensus 265 ~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~ 311 (330)
T cd03465 265 KACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCE 311 (330)
T ss_pred ceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCC
Confidence 78999999997 77889999999999999999865 7999999997
No 26
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=99.73 E-value=6.3e-17 Score=153.43 Aligned_cols=184 Identities=17% Similarity=0.143 Sum_probs=139.4
Q ss_pred hcHHHHHHHHhc-C--CCCCcEeecHHHHHhhcCCCC-Cc---cCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecC
Q 020229 136 KAVTEYKEAKGL-G--VETVPVLIGPVSYLLLSKPAK-GV---AKTF-SLLSLLPKILPIYKEVISELKAAGASWIQFDE 207 (329)
Q Consensus 136 ~~~~~~~~~~~~-~--~~~k~~i~GP~tl~~~~~~~~-~y---~~~~-~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDE 207 (329)
..++..+.+++. + ......+.||+|++......+ .+ +..+ ...++++.+++.+.++++++.++|+++||+.|
T Consensus 122 ~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d 201 (339)
T PRK06252 122 TVLEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIAD 201 (339)
T ss_pred HHHHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 345666666543 2 122344999999985432211 11 1111 24567888888999999999999999999999
Q ss_pred CccCC-CCChHHHHHH-HHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCC
Q 020229 208 PLLVM-DLDSHKLHAF-IHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYG 285 (329)
Q Consensus 208 P~l~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~ 285 (329)
|..+. -++++.+++| .+.++++.+.++.. ..++|+| ||...+++.+.++++|++++|...+..+..+.+. +
T Consensus 202 ~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~c-G~~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~g-----~ 274 (339)
T PRK06252 202 PSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHIC-GDLTSILEEMADCGFDGISIDEKVDVKTAKENVG-----D 274 (339)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEEC-CCchHHHHHHHhcCCCeeccCCCCCHHHHHHHhC-----C
Confidence 98664 3688888665 56778888887643 6789999 9999999999999999999998876556665554 5
Q ss_pred CeeeeeeecC-CCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 286 AGIGPGVYDI-HSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 286 ~~i~~Gvvd~-~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
+.++.|++|+ .....+|+|+|+++++++++. ...++||+||
T Consensus 275 ~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~---g~~Il~~gcg 316 (339)
T PRK06252 275 RAALIGNVSTSFTLLNGTPEKVKAEAKKCLED---GVDILAPGCG 316 (339)
T ss_pred CeEEEeccCcHHHhcCCCHHHHHHHHHHHHHc---CCCEEcCCCC
Confidence 7899999999 677889999999999999983 2458999998
No 27
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=99.73 E-value=5.4e-17 Score=153.95 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=137.9
Q ss_pred hhcHHHHHHHHhc-C--CCCCcEeecHHHHHhhcCCCC----CccCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCeEEec
Q 020229 135 HKAVTEYKEAKGL-G--VETVPVLIGPVSYLLLSKPAK----GVAKTFS-LLSLLPKILPIYKEVISELKAAGASWIQFD 206 (329)
Q Consensus 135 ~~~~~~~~~~~~~-~--~~~k~~i~GP~tl~~~~~~~~----~y~~~~~-~~~l~~~la~~~~~~i~~l~~aG~~~IQiD 206 (329)
+..++..+.+++. + ...+..+.||+|++......+ .++..++ .+++++.+++.+.++++++.++|+++||+.
T Consensus 121 ~~~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~ 200 (340)
T TIGR01463 121 PVVLEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIA 200 (340)
T ss_pred hhHHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 3456677776643 2 223445899999985332111 1221122 466788888999999999999999999999
Q ss_pred CCccCC-CCChHHHHHH-HHHHHHHHcCCCC-CceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhccc
Q 020229 207 EPLLVM-DLDSHKLHAF-IHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVK 283 (329)
Q Consensus 207 EP~l~~-~~~~~~~~~~-~~~~~~~~~~~~~-~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~ 283 (329)
||..+. .++++.++.+ .+.++++.+.+.. +...++|+| ||...+++.+.++++|++++|+..+..+..+.++
T Consensus 201 dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C-G~~~~~~~~l~~~g~d~ls~d~~~~l~~~~~~~g---- 275 (340)
T TIGR01463 201 DPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHIC-GFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIG---- 275 (340)
T ss_pred CCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC-CCchhhHHHHHHhCCCEEeecCCCCHHHHHHHcC----
Confidence 998654 4677777555 4667777766531 245689999 9999999999999999999998876555555554
Q ss_pred CCCeeeeeeecCCC-CCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 284 YGAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 284 ~~~~i~~Gvvd~~~-~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
++.+..|+||+.. ...+|+|+|.++++++++. .+.+++|+||
T Consensus 276 -~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~~Il~~gcg 318 (340)
T TIGR01463 276 -GQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GGDIVMPGCD 318 (340)
T ss_pred -CceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CCeEECCCCC
Confidence 5788899999854 4579999999999999973 5789999998
No 28
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=99.66 E-value=1.3e-15 Score=143.73 Aligned_cols=184 Identities=16% Similarity=0.149 Sum_probs=138.4
Q ss_pred hcHHHHHHHHhc-C--CCCCcEeecHHHHHhhcCCCCCc----cCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecC
Q 020229 136 KAVTEYKEAKGL-G--VETVPVLIGPVSYLLLSKPAKGV----AKTF-SLLSLLPKILPIYKEVISELKAAGASWIQFDE 207 (329)
Q Consensus 136 ~~~~~~~~~~~~-~--~~~k~~i~GP~tl~~~~~~~~~y----~~~~-~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDE 207 (329)
..++..+.+++. + ......+.||+|++......+.+ +..+ ...++++.+++.+.+.++++.++|++.||+.|
T Consensus 113 ~v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d 192 (326)
T cd03307 113 TVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIAD 192 (326)
T ss_pred HHHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 345666666543 2 12233489999998533211111 1111 25678888888899999999999999999999
Q ss_pred CccCCC-CChHHHHHHH-HHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCC
Q 020229 208 PLLVMD-LDSHKLHAFI-HSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYG 285 (329)
Q Consensus 208 P~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~ 285 (329)
|..+.. ++++.+++|. +.++++.+.++. .++++|+| |+...+++.+.++++|++++|...+..+..+.++ +
T Consensus 193 ~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~~~ilh~c-G~~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g-----~ 265 (326)
T cd03307 193 PTASPELISPEFYEEFALPYHKKIVKELHG-CPTILHIC-GNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVG-----G 265 (326)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHhc-CCcEEEEC-CCChhHHHHHHHcCCCeecccccCCHHHHHHHcC-----C
Confidence 986543 4888886654 667777777754 57789999 9998999999999999999998776566666665 5
Q ss_pred CeeeeeeecCC-CCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 286 AGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 286 ~~i~~Gvvd~~-~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
+....|++|+. ....+|+|+|++.++++++. + ..++||+||
T Consensus 266 ~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~-g--~~Il~~Gc~ 307 (326)
T cd03307 266 RAALIGNVSPSQTLLNGTPEDVKAEARKCLED-G--VDILAPGCG 307 (326)
T ss_pred ceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc-c--CCEecCcCC
Confidence 78999999996 67789999999999999986 2 268999998
No 29
>PLN02433 uroporphyrinogen decarboxylase
Probab=99.66 E-value=2.3e-15 Score=143.10 Aligned_cols=185 Identities=13% Similarity=0.033 Sum_probs=139.3
Q ss_pred hhcHHHHHHHHhc-CCCCCc---EeecHHHHHhhcCC-------CCC----ccCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q 020229 135 HKAVTEYKEAKGL-GVETVP---VLIGPVSYLLLSKP-------AKG----VAKTFSLLSLLPKILPIYKEVISELKAAG 199 (329)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~k~---~i~GP~tl~~~~~~-------~~~----y~~~~~~~~l~~~la~~~~~~i~~l~~aG 199 (329)
+..++..+.+++. + ..+| .+.||+|++..... .+. |.+....+++++.+++...+.++++.++|
T Consensus 114 ~~~leai~~l~~~~~-~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaG 192 (345)
T PLN02433 114 PFVGEALKILRKEVG-NEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAG 192 (345)
T ss_pred HHHHHHHHHHHHHhC-CCCceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456666666643 2 1234 38999999853321 000 11111246788888888999999999999
Q ss_pred CCeEEecCCccCCCCChHHHHHHH-HHHHHHHcCCCC---CceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHH
Q 020229 200 ASWIQFDEPLLVMDLDSHKLHAFI-HSFRITNCGVQD---TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLL 275 (329)
Q Consensus 200 ~~~IQiDEP~l~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l 275 (329)
++.||+.||+ +..++++.+++|. ..++++.+.+.+ +.++++|+| |+. .+++.+.++++|++++|+..+..+..
T Consensus 193 a~~i~i~d~~-~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~~-~~~~~~~~~~~~~i~~d~~~dl~e~~ 269 (345)
T PLN02433 193 AQVVQIFDSW-AGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GSG-GLLERLAGTGVDVIGLDWTVDMADAR 269 (345)
T ss_pred CCEEEEecCc-cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CCH-HHHHHHHhcCCCEEEcCCCCCHHHHH
Confidence 9999999995 4468888887664 445555554432 357899999 986 78999999999999999987766777
Q ss_pred HHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 276 SVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 276 ~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
+.++ ++.++.|++|+ .....|+|+|++.++++++..+....++||+||
T Consensus 270 ~~~g-----~~~~l~GNi~p-~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~ 317 (345)
T PLN02433 270 RRLG-----SDVAVQGNVDP-AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHG 317 (345)
T ss_pred HHhC-----CCeEEEeCCCc-hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Confidence 6665 67999999998 456899999999999999998777799999998
No 30
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=99.66 E-value=1.9e-15 Score=143.71 Aligned_cols=187 Identities=13% Similarity=0.066 Sum_probs=138.2
Q ss_pred hhcHHHHHHHHhcCCCCCcE---eecHHHHHhhcCC---CCC--------ccCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q 020229 135 HKAVTEYKEAKGLGVETVPV---LIGPVSYLLLSKP---AKG--------VAKTFSLLSLLPKILPIYKEVISELKAAGA 200 (329)
Q Consensus 135 ~~~~~~~~~~~~~~~~~k~~---i~GP~tl~~~~~~---~~~--------y~~~~~~~~l~~~la~~~~~~i~~l~~aG~ 200 (329)
...++..+.+++.....+|+ +.||+|++..... ... +.+....+++++.+++.+.+.++++.++|+
T Consensus 121 ~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGa 200 (346)
T PRK00115 121 PYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGA 200 (346)
T ss_pred HHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566666666431112443 8899999854321 000 111112467888888899999999999999
Q ss_pred CeEEecCCccCCCCChHHHHHHH-HHHHHHHcCCCCC--ceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHH
Q 020229 201 SWIQFDEPLLVMDLDSHKLHAFI-HSFRITNCGVQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSV 277 (329)
Q Consensus 201 ~~IQiDEP~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~ 277 (329)
+.||+-||+ +.-++++.+++|. ..++++.+.+.+. ...++|+| |+...+++.+.++++|++++++..+..+..+.
T Consensus 201 d~i~i~d~~-~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~is~d~~~dl~~~k~~ 278 (346)
T PRK00115 201 QAVQIFDSW-AGALSPADYREFVLPYMKRIVAELKREHPDVPVILFG-KGAGELLEAMAETGADVVGLDWTVDLAEARRR 278 (346)
T ss_pred CEEEEecCc-cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCcHHHHHHHHhcCCCEEeeCCCCCHHHHHHH
Confidence 999999995 3457888887664 4556666555321 23479999 88988999999999999999998766666666
Q ss_pred hhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 278 FREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 278 l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
++ ++..+.|++|+ .....++|+|++.++++++..+....++||+||
T Consensus 279 ~g-----~~~~i~Gni~p-~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~ 324 (346)
T PRK00115 279 VG-----DKKALQGNLDP-AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHG 324 (346)
T ss_pred cC-----CCeEEEeCCCh-hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCc
Confidence 65 56899999999 444689999999999999988778899999997
No 31
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=99.63 E-value=5.1e-15 Score=140.38 Aligned_cols=186 Identities=15% Similarity=0.103 Sum_probs=136.5
Q ss_pred hhcHHHHHHHHhc-CCCCCcE---eecHHHHHhhcCC---CC-------CccCCCC-HHHHHHHHHHHHHHHHHHHHHCC
Q 020229 135 HKAVTEYKEAKGL-GVETVPV---LIGPVSYLLLSKP---AK-------GVAKTFS-LLSLLPKILPIYKEVISELKAAG 199 (329)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~k~~---i~GP~tl~~~~~~---~~-------~y~~~~~-~~~l~~~la~~~~~~i~~l~~aG 199 (329)
+..++..+.+++. + ..+|+ +.||+|++..... .. ..+..++ .+++++.+++...+.++++.++|
T Consensus 115 ~~~leai~~l~~~~~-~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaG 193 (338)
T TIGR01464 115 PYVYEAIKLLREELP-GEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAG 193 (338)
T ss_pred HHHHHHHHHHHHHcC-CCCceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456666666643 2 12443 8999999853321 00 0111112 46777888888899999999999
Q ss_pred CCeEEecCCccCCCCChHHHHHHH-HHHHHHHcCCCCC--ceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHH
Q 020229 200 ASWIQFDEPLLVMDLDSHKLHAFI-HSFRITNCGVQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLS 276 (329)
Q Consensus 200 ~~~IQiDEP~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~ 276 (329)
++.||+-||+ +..++++.+++|. ..++++.+.+.+. ...++|+| |+...+++.+.++++|++|+++..+..+..+
T Consensus 194 ad~i~i~d~~-~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~~s~d~~~dl~e~~~ 271 (338)
T TIGR01464 194 AQAVQIFDSW-AGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFA-KGAGHLLEELAETGADVVGLDWTVDLKEARK 271 (338)
T ss_pred CCEEEEECCc-cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe-CCcHHHHHHHHhcCCCEEEeCCCCCHHHHHH
Confidence 9999999994 4457888886654 4556666554321 23479999 8888999999999999999999876666666
Q ss_pred HhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcC-CCceEeCCCCC
Q 020229 277 VFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-TNILWVNPDLH 329 (329)
Q Consensus 277 ~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~-~~~l~ispdCG 329 (329)
.++ ++..+.|+||+... ..|+|+|.+.++++++..+ ....++||+||
T Consensus 272 ~~~-----~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~ 319 (338)
T TIGR01464 272 RVG-----PGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHG 319 (338)
T ss_pred HhC-----CCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCc
Confidence 665 57899999999555 7899999999999999874 56789999997
No 32
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=99.62 E-value=9.2e-15 Score=138.44 Aligned_cols=186 Identities=13% Similarity=0.080 Sum_probs=136.5
Q ss_pred hcHHHHHHHHhcCCCCCcE---eecHHHHHhhcCC---CC---C-----ccCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q 020229 136 KAVTEYKEAKGLGVETVPV---LIGPVSYLLLSKP---AK---G-----VAKTFSLLSLLPKILPIYKEVISELKAAGAS 201 (329)
Q Consensus 136 ~~~~~~~~~~~~~~~~k~~---i~GP~tl~~~~~~---~~---~-----y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~ 201 (329)
..++..+.+++.....+|+ +.||+|++..... .. . +.+....+++++.+++...+.++++.++|++
T Consensus 113 ~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad 192 (335)
T cd00717 113 YVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQ 192 (335)
T ss_pred HHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456666665431112443 8899999854321 11 1 1111124677888888899999999999999
Q ss_pred eEEecCCccCCCCChHHHHHHH-HHHHHHHcCCCCC--ceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHh
Q 020229 202 WIQFDEPLLVMDLDSHKLHAFI-HSFRITNCGVQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 278 (329)
Q Consensus 202 ~IQiDEP~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l 278 (329)
.||+-||+ +.-++++.+++|. ..++++.+.++.. ...++|+| |+..++++.+.++++++++++...+..+..+.+
T Consensus 193 ~i~i~d~~-~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~~s~d~~~dl~e~k~~~ 270 (335)
T cd00717 193 AVQIFDSW-AGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFA-KGAGGLLEDLAQLGADVVGLDWRVDLDEARKRL 270 (335)
T ss_pred EEEEeCcc-cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCCHHHHHHHHhcCCCEEEeCCCCCHHHHHHHh
Confidence 99999995 3457888886654 4556666555421 23479999 677789999999999999999987666666666
Q ss_pred hhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCC-CceEeCCCCC
Q 020229 279 REGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET-NILWVNPDLH 329 (329)
Q Consensus 279 ~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~-~~l~ispdCG 329 (329)
+ ++.+..|+||+. ....++|+|.+.++++++..+. ...++||+||
T Consensus 271 g-----~~~~i~Gni~p~-~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~ 316 (335)
T cd00717 271 G-----PKVALQGNLDPA-LLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHG 316 (335)
T ss_pred C-----CCeEEEeCCChh-hhcCCHHHHHHHHHHHHHHhCcCCCceeecCCc
Confidence 5 689999999985 4568899999999999999864 7899999997
No 33
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=99.55 E-value=2.6e-14 Score=135.69 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=126.2
Q ss_pred cHHHHHHHHhcCCCCCcE---eecHHHHHhhcC---CCCC-----ccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEe
Q 020229 137 AVTEYKEAKGLGVETVPV---LIGPVSYLLLSK---PAKG-----VAKTFSLLSLLPKILPIYKEVISELKAAGASWIQF 205 (329)
Q Consensus 137 ~~~~~~~~~~~~~~~k~~---i~GP~tl~~~~~---~~~~-----y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQi 205 (329)
.++..+.+++.-....++ +.||+|++.... ..+. |.+....+++++.+++.+.+.++++.++|++.|++
T Consensus 122 ~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~ 201 (343)
T PF01208_consen 122 VLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFI 201 (343)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 455555555421122443 899999985443 2111 21111257788899999999999999999999998
Q ss_pred cCCccCCCCChHHHHHH-HHHHHHHHcCCCC-Cc-eeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcc
Q 020229 206 DEPLLVMDLDSHKLHAF-IHSFRITNCGVQD-TT-QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGV 282 (329)
Q Consensus 206 DEP~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~ 282 (329)
-+ .....++++.++.| .+.++++.+.+.. .. .+.+|+| |+...+++.+.++++|+++++...+..+..+.+.
T Consensus 202 ~d-~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~c-G~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~--- 276 (343)
T PF01208_consen 202 FD-SSGSLISPEMFEEFILPYLKKIIDAIKEAGKDPVILHIC-GNTTPILDDLADLGADVLSVDEKVDLAEAKRKLG--- 276 (343)
T ss_dssp EE-TTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE-EEEEET-THG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHT---
T ss_pred cc-cccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEC-CchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhC---
Confidence 88 44445788888665 3455666554432 12 7899999 9999999999999999999997775556666555
Q ss_pred cCCCeeeeeeecCC-CCCCCCHHHHHHHHHHHHHh--cCCCceEeCCCCC
Q 020229 283 KYGAGIGPGVYDIH-SPRIPSTEEIADRINKMLAV--LETNILWVNPDLH 329 (329)
Q Consensus 283 ~~~~~i~~Gvvd~~-~~~~e~~e~i~~ri~~a~~~--v~~~~l~ispdCG 329 (329)
++.+..|.||+. ... .|+|+|.+.++++++. -+....+++|+||
T Consensus 277 --~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ 323 (343)
T PF01208_consen 277 --DKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILSPGCG 323 (343)
T ss_dssp --TSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS-
T ss_pred --CCeEEECCCCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCc
Confidence 689999999994 556 9999999999999994 4589999999997
No 34
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.48 E-value=3.8e-13 Score=126.16 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=130.4
Q ss_pred CcEeecHHHHHhhcCC-CC---C-ccCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCeEEecCCccC---CCCChHHHHHH
Q 020229 152 VPVLIGPVSYLLLSKP-AK---G-VAKTFSLLSLLPKILPIYKEVISELKAA-GASWIQFDEPLLV---MDLDSHKLHAF 222 (329)
Q Consensus 152 k~~i~GP~tl~~~~~~-~~---~-y~~~~~~~~l~~~la~~~~~~i~~l~~a-G~~~IQiDEP~l~---~~~~~~~~~~~ 222 (329)
-+.+.||+|.+.+... .+ . |.+.....++++.+++...+.++++.++ |+++||+-|+..+ ..++++.+++|
T Consensus 116 ~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~ef 195 (321)
T cd03309 116 VPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREF 195 (321)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHH
Confidence 4459999998744331 11 0 1111135788899999999999999988 9999998775432 23678888665
Q ss_pred -HHHHHHHHcCCCC--CceeEEeecccChHHHHHHHHhCCCcEEEEEcCC-CchhHHHHhhhcccCCCeeeeeeecCCCC
Q 020229 223 -IHSFRITNCGVQD--TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR-SDEKLLSVFREGVKYGAGIGPGVYDIHSP 298 (329)
Q Consensus 223 -~~~~~~~~~~~~~--~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~-~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~ 298 (329)
.+.++++.+.++. ..++++|+| |+...+++.+.++++|++++++.. +..+..+.++ ++..+.|++|+...
T Consensus 196 v~P~~krIi~~ik~~~g~piilH~c-G~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g-----~k~~l~GNlDp~~L 269 (321)
T cd03309 196 ILPRMQRIFDFLRSNTSALIVHHSC-GAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLG-----DKVVLAGAIDDVAL 269 (321)
T ss_pred HHHHHHHHHHHHHhccCCceEEEeC-CCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhC-----CCeEEEcCCChHHh
Confidence 3556666665542 247899999 999889999999999999999876 5556666665 67899999998655
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC-CceEeCCCCC
Q 020229 299 RIP-STEEIADRINKMLAVLET-NILWVNPDLH 329 (329)
Q Consensus 299 ~~e-~~e~i~~ri~~a~~~v~~-~~l~ispdCG 329 (329)
..+ ++|+|++.++++++.+++ ...+.+|+|+
T Consensus 270 ~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~ 302 (321)
T cd03309 270 DTATWPEEDARGVAKAAAECAPIHPFISAPTAG 302 (321)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCC
Confidence 444 489999999999999987 8999999996
No 35
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=99.44 E-value=1.8e-12 Score=124.69 Aligned_cols=170 Identities=13% Similarity=0.115 Sum_probs=127.5
Q ss_pred EeecHHH-HHhhcCCCCC-----ccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCe-EEecCCcc-CCCCChHHHHHH-HH
Q 020229 154 VLIGPVS-YLLLSKPAKG-----VAKTFSLLSLLPKILPIYKEVISELKAAGASW-IQFDEPLL-VMDLDSHKLHAF-IH 224 (329)
Q Consensus 154 ~i~GP~t-l~~~~~~~~~-----y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~-IQiDEP~l-~~~~~~~~~~~~-~~ 224 (329)
.+.||+| ++...+.-.. |.+.-..+++++.+++...+.+++..++|++. |.+.+|.- +..++++.+++| ..
T Consensus 176 ~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ef~~P 255 (378)
T cd03308 176 VSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEKFYWP 255 (378)
T ss_pred eEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHHHHHH
Confidence 4999997 6643332111 21111357788999999999999999999995 66667763 334788888665 45
Q ss_pred HHHHHHcCCCC-CceeEEeecccChHHHHHHHHhCCCc-EEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCC
Q 020229 225 SFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDAD-VITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS 302 (329)
Q Consensus 225 ~~~~~~~~~~~-~~~i~lH~C~Gn~~~i~~~l~~~~~d-~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~ 302 (329)
.++++++.+.+ +.++++|+| |++..+++.+.+++++ +++++...+..+..+.++ ++..+.|++|+......|
T Consensus 256 ~~k~i~~~i~~~g~~~ilh~c-G~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g-----~~~~i~GNl~p~~L~~Gt 329 (378)
T cd03308 256 SFKKVVEGLAARGQRIFLFFE-GDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLG-----DKKCIAGGFPTTLLKYGT 329 (378)
T ss_pred HHHHHHHHHHhcCCCEEEEcC-CCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhC-----CCEEEEcCCCCHHHhcCC
Confidence 66777766542 357899999 9999999999999997 555544444456665665 679999999998556789
Q ss_pred HHHHHHHHHHHHHhcC-CCceEeCCCCC
Q 020229 303 TEEIADRINKMLAVLE-TNILWVNPDLH 329 (329)
Q Consensus 303 ~e~i~~ri~~a~~~v~-~~~l~ispdCG 329 (329)
+|+|.+.++++++..+ ....+++|+||
T Consensus 330 ~e~i~~~v~~~l~~~~~~~gfIl~~gcg 357 (378)
T cd03308 330 PEECIDYVKELLDTLAPGGGFIFGTDKP 357 (378)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEeCCCc
Confidence 9999999999999986 57899999998
No 36
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=99.38 E-value=2e-11 Score=114.86 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=134.0
Q ss_pred hhcHHHHHHHHhc-CCCCCc---EeecHHHHH-hhcCC--CCC--------ccCCCC-HHHHHHHHHHHHHHHHHHHHHC
Q 020229 135 HKAVTEYKEAKGL-GVETVP---VLIGPVSYL-LLSKP--AKG--------VAKTFS-LLSLLPKILPIYKEVISELKAA 198 (329)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~k~---~i~GP~tl~-~~~~~--~~~--------y~~~~~-~~~l~~~la~~~~~~i~~l~~a 198 (329)
+..++.++.+++. +. ..| ..-||+|++ ++... .+. |.. ++ .+++++.++++..+.++++.++
T Consensus 124 ~~V~~ai~~lrekl~~-~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~-P~~~~~ll~kltd~~i~Yl~~qi~a 201 (352)
T COG0407 124 PYVLDAIKLLREKLGG-EVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTE-PDAVHALLDKLTDAVIEYLKAQIEA 201 (352)
T ss_pred HHHHHHHHHHHHHcCC-CCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777743 31 233 378999998 33221 111 211 23 5789999999999999999999
Q ss_pred CCCeEEecCCccCCCCChHHHHHHH-HHHHHHHcCCC--CCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchhHH
Q 020229 199 GASWIQFDEPLLVMDLDSHKLHAFI-HSFRITNCGVQ--DTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLL 275 (329)
Q Consensus 199 G~~~IQiDEP~l~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l 275 (329)
|++.|||.|.. +..++...++.|. +...++.+.++ .....++|.| ++....++.+.++++|++++|+..+..+..
T Consensus 202 GAdavqifDsW-~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f~-~ga~~~l~~m~~~g~d~l~vdw~v~l~~a~ 279 (352)
T COG0407 202 GADAVQIFDSW-AGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHFC-KGAGHLLEDMAKTGFDVLGVDWRVDLKEAK 279 (352)
T ss_pred CCCEEEeeccc-cccCCcccHHHHhhhHHHHHHHHHHHhCCCCcEEEEC-CCcHHHHHHHHhcCCcEEeeccccCHHHHH
Confidence 99999999986 3334444454443 22233333332 1114479999 778889999999999999999998766666
Q ss_pred HHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCC-CceEeCCCCC
Q 020229 276 SVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET-NILWVNPDLH 329 (329)
Q Consensus 276 ~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~-~~l~ispdCG 329 (329)
+.+. ++..+-|++|+ .....+++.|++.+++.++-... ..-++|+.||
T Consensus 280 ~~~~-----~~~~lqGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhG 328 (352)
T COG0407 280 KRLG-----DKVALQGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHG 328 (352)
T ss_pred HHhC-----CCceEEeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCC
Confidence 6665 34789999999 77889999999999999998864 5999999998
No 37
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=98.02 E-value=3.5e-05 Score=69.58 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHH-HHHHHHHcC----CC----CCceeEEeecccC
Q 020229 177 LLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFI-HSFRITNCG----VQ----DTTQIHTHMCYSN 247 (329)
Q Consensus 177 ~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~-~~~~~~~~~----~~----~~~~i~lH~C~Gn 247 (329)
...|+..+.+++-+++.....+|+..+||=|-. +..+++++++++. ..++++.+. ++ +.+++++..- |+
T Consensus 184 sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSw-ageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fak-G~ 261 (359)
T KOG2872|consen 184 SHALLQILTDAIVEYLVYQVVAGAQALQIFESW-AGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAK-GS 261 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-cccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEc-Cc
Confidence 478999999999999999999999999998755 5578888775542 333333332 22 1246666665 66
Q ss_pred hHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 248 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 248 ~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
.. .++.+.++++|++++|+...+.+..+.+. +..-+=|++|+.. .-.++|+|.+++++.++..|+++-+++=.
T Consensus 262 g~-~Le~l~~tG~DVvgLDWTvdp~ear~~~g-----~~VtlQGNlDP~~-ly~s~e~it~~v~~mv~~fG~~ryI~NLG 334 (359)
T KOG2872|consen 262 GG-ALEELAQTGYDVVGLDWTVDPAEARRRVG-----NRVTLQGNLDPGV-LYGSKEEITQLVKQMVKDFGKSRYIANLG 334 (359)
T ss_pred ch-HHHHHHhcCCcEEeecccccHHHHHHhhC-----CceEEecCCChHH-hcCCHHHHHHHHHHHHHHhCccceEEecC
Confidence 53 69999999999999999998888887776 4577789999854 35899999999999999999988887644
Q ss_pred C
Q 020229 328 L 328 (329)
Q Consensus 328 C 328 (329)
-
T Consensus 335 H 335 (359)
T KOG2872|consen 335 H 335 (359)
T ss_pred C
Confidence 3
No 38
>PLN02334 ribulose-phosphate 3-epimerase
Probab=95.40 E-value=0.13 Score=46.00 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHH-HHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEE--E
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKL-HAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI--T 264 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~--~ 264 (329)
+.++++.+.+.|+++||+|......... ..+ -.+.+.+..+. +..+.+|+---|..+.++.+.++++|++ +
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~~-~~~g~~~~~~l~~~~-----~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH 95 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVPN-LTIGPPVVKALRKHT-----DAPLDCHLMVTNPEDYVPDFAKAGASIFTFH 95 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCCc-cccCHHHHHHHHhcC-----CCcEEEEeccCCHHHHHHHHHHcCCCEEEEe
Confidence 5667888999999999999876543211 011 01122222221 2455788886667777888899999999 8
Q ss_pred EE
Q 020229 265 IE 266 (329)
Q Consensus 265 lE 266 (329)
+|
T Consensus 96 ~~ 97 (229)
T PLN02334 96 IE 97 (229)
T ss_pred ec
Confidence 88
No 39
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=94.53 E-value=1.4 Score=40.45 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCceeEEeeccc--ChHHHHHHHHhCCCc--EEEEEcCC--Cc-hhHHHHhhhcccCCCe
Q 020229 215 DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYS--NFNDIIHSIIDMDAD--VITIENSR--SD-EKLLSVFREGVKYGAG 287 (329)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G--n~~~i~~~l~~~~~d--~~~lE~~~--~~-~~~l~~l~~~~~~~~~ 287 (329)
...+.+.|...++.+.+ . +.++++|+..+ ...+++..|.+.++. .+.+-... .. ....+.+. .|..
T Consensus 131 ~~~q~~~f~~~~~lA~~-~--~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~----~G~~ 203 (293)
T cd00530 131 TPLEEKVLRAAARAQKE-T--GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA----LGAY 203 (293)
T ss_pred CHHHHHHHHHHHHHHHH-H--CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHh----CCCE
Confidence 34444455555554443 3 36789998743 455778888776553 23344332 22 33333333 3555
Q ss_pred eeeeeecCCC-CCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 288 IGPGVYDIHS-PRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 288 i~~Gvvd~~~-~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
+.++...+.. ....+.+.-.+.++++++.++.+++++++|++
T Consensus 204 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p 246 (293)
T cd00530 204 LEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVF 246 (293)
T ss_pred EEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcC
Confidence 5555433211 11233456778899999999999999999974
No 40
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=94.52 E-value=2.9 Score=38.69 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc---cC------hHHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY---SN------FNDI 251 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~---Gn------~~~i 251 (329)
++++.++|++.++.|.+-|++.|-|. .. .+...+++...+..++.+......++.+|.-. |. ....
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLiE-T~----~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~ 212 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILIE-TI----FDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAF 212 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEe-hh----ccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHH
Confidence 68889999999999999999988776 11 12334445555556655533334566666553 32 3478
Q ss_pred HHHHHhCCCcEEEEEcCCCchhHHHHhhhc-ccCCCeee----eeeecCCCC---CCCCHHHHHHHHHHHHHhcCCCceE
Q 020229 252 IHSIIDMDADVITIENSRSDEKLLSVFREG-VKYGAGIG----PGVYDIHSP---RIPSTEEIADRINKMLAVLETNILW 323 (329)
Q Consensus 252 ~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~-~~~~~~i~----~Gvvd~~~~---~~e~~e~i~~ri~~a~~~v~~~~l~ 323 (329)
|..+..++++.+.+-.+..+.+....+... ...+..++ .|+-+.... .-++|++.+..+....+.-+.+ +
T Consensus 213 ~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~vn--I 290 (311)
T COG0646 213 LNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGVN--I 290 (311)
T ss_pred HHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCce--e
Confidence 899999999999999887666555555430 11122222 355555444 6899999999998776654332 3
Q ss_pred eCCCCC
Q 020229 324 VNPDLH 329 (329)
Q Consensus 324 ispdCG 329 (329)
|.-.||
T Consensus 291 vGGCCG 296 (311)
T COG0646 291 VGGCCG 296 (311)
T ss_pred eccccC
Confidence 445565
No 41
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=92.87 E-value=1 Score=40.26 Aligned_cols=96 Identities=9% Similarity=0.120 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHCCCCeEEecC--CccCCCC--ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDE--PLLVMDL--DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDE--P~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
.+.++++.+.++|++++.+|= -.+.-++ .+..++ . +. .+.++-+|+.--|+...++.+.++++|.
T Consensus 26 ~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~----~---i~----~~~~~DvHLMv~~P~~~i~~~~~aGad~ 94 (228)
T PRK08091 26 KFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIK----Q---FP----THCFKDVHLMVRDQFEVAKACVAAGADI 94 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHH----H---hC----CCCCEEEEeccCCHHHHHHHHHHhCCCE
Confidence 367788999999999999992 2222222 233332 1 11 1356788999889988999999999998
Q ss_pred EEEEcC--CCchhHHHHhhhcccCCCeeeeee-ecCC
Q 020229 263 ITIENS--RSDEKLLSVFREGVKYGAGIGPGV-YDIH 296 (329)
Q Consensus 263 ~~lE~~--~~~~~~l~~l~~~~~~~~~i~~Gv-vd~~ 296 (329)
+++=+- ....+.++.+++ .|..+-.|+ +++.
T Consensus 95 It~H~Ea~~~~~~~l~~Ik~---~g~~~kaGlalnP~ 128 (228)
T PRK08091 95 VTLQVEQTHDLALTIEWLAK---QKTTVLIGLCLCPE 128 (228)
T ss_pred EEEcccCcccHHHHHHHHHH---CCCCceEEEEECCC
Confidence 876554 334466666664 244335565 3443
No 42
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.83 E-value=1.7 Score=38.11 Aligned_cols=93 Identities=22% Similarity=0.358 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCCeEEec--CCccCCCC--ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEE
Q 020229 188 YKEVISELKAAGASWIQFD--EPLLVMDL--DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 263 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiD--EP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~ 263 (329)
+.++++++.++|++++.+| |-.+.-.+ .+..+ +.+.+. . +.++-+|+..-|+...++.+.++++|.+
T Consensus 14 l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i-------~~i~~~-~-~~~~DvHLMv~~P~~~i~~~~~~g~~~i 84 (201)
T PF00834_consen 14 LEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDII-------KAIRKI-T-DLPLDVHLMVENPERYIEEFAEAGADYI 84 (201)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHH-------HHHHTT-S-SSEEEEEEESSSGGGHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHH-------HHHhhc-C-CCcEEEEeeeccHHHHHHHHHhcCCCEE
Confidence 6678899999999999999 32222222 23333 222222 2 4678899998899999999999999998
Q ss_pred EEEcCC--CchhHHHHhhhcccCCCeeeeee
Q 020229 264 TIENSR--SDEKLLSVFREGVKYGAGIGPGV 292 (329)
Q Consensus 264 ~lE~~~--~~~~~l~~l~~~~~~~~~i~~Gv 292 (329)
++-+-. ...+.++.+++ .|...++-+
T Consensus 85 ~~H~E~~~~~~~~i~~ik~---~g~k~Gial 112 (201)
T PF00834_consen 85 TFHAEATEDPKETIKYIKE---AGIKAGIAL 112 (201)
T ss_dssp EEEGGGTTTHHHHHHHHHH---TTSEEEEEE
T ss_pred EEcccchhCHHHHHHHHHH---hCCCEEEEE
Confidence 887653 34566666664 244444443
No 43
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=92.29 E-value=1.7 Score=37.81 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEc
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~ 267 (329)
+.+.++.+.++|+++||++.+.+. ..+.......+..+.... ++++.+| +-++...++++|++++..
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~----~~~~~~~~~~~~~~~~~~--~~~l~~~-------~~~~~a~~~gad~vh~~~ 89 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLD----TRERLELARALKELCRRY--GVPLIVN-------DRVDLALAVGADGVHLGQ 89 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHHHHHHHHHHHHh--CCeEEEe-------ChHHHHHHcCCCEEecCc
Confidence 445567788899999999988643 222222222233333222 2445554 226777888999999865
Q ss_pred CC
Q 020229 268 SR 269 (329)
Q Consensus 268 ~~ 269 (329)
..
T Consensus 90 ~~ 91 (212)
T PRK00043 90 DD 91 (212)
T ss_pred cc
Confidence 43
No 44
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.15 E-value=1.7 Score=38.81 Aligned_cols=86 Identities=21% Similarity=0.386 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCeEEec--CCccCCCC--ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFD--EPLLVMDL--DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD--EP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
.+.++++.+.++|++++.+| |-.+.-++ .++.+ ..+++.. . +.++-+|+.--|+...++.+.++++|.
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i----~~lr~~~---~-~~~~dvHLMv~~P~~~i~~~~~~gad~ 88 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVC----QALRKHG---I-TAPIDVHLMVEPVDRIVPDFADAGATT 88 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHH----HHHHhhC---C-CCCEEEEeccCCHHHHHHHHHHhCCCE
Confidence 46778899999999999999 32222222 23333 2222221 1 256788998888988999999999998
Q ss_pred EEEEcC--CCchhHHHHhhh
Q 020229 263 ITIENS--RSDEKLLSVFRE 280 (329)
Q Consensus 263 ~~lE~~--~~~~~~l~~l~~ 280 (329)
+++=+- ....+.++.+++
T Consensus 89 I~~H~Ea~~~~~~~l~~Ir~ 108 (223)
T PRK08745 89 ISFHPEASRHVHRTIQLIKS 108 (223)
T ss_pred EEEcccCcccHHHHHHHHHH
Confidence 876543 334456666663
No 45
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=92.14 E-value=1.5 Score=38.99 Aligned_cols=85 Identities=22% Similarity=0.308 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCCCCeEEec--CCccCCCC--ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFD--EPLLVMDL--DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD--EP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
-+.++++.+.++|++++.+| |-.+.-++ .+..++ .+++.. . +.++-+|+.--|+...++.+.++++|.
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~----~i~~~~---~-~~~~dvHLMv~~p~~~i~~~~~~gad~ 84 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICK----ALRDYG---I-TAPIDVHLMVKPVDRIIPDFAKAGASM 84 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHH----HHHHhC---C-CCCEEEEeccCCHHHHHHHHHHhCCCE
Confidence 46788999999999999999 32222222 233332 222221 1 256788998888888899999999998
Q ss_pred EEEEcC--CCchhHHHHhh
Q 020229 263 ITIENS--RSDEKLLSVFR 279 (329)
Q Consensus 263 ~~lE~~--~~~~~~l~~l~ 279 (329)
+++=+- ....+.++.++
T Consensus 85 i~~H~Ea~~~~~~~l~~ik 103 (220)
T PRK08883 85 ITFHVEASEHVDRTLQLIK 103 (220)
T ss_pred EEEcccCcccHHHHHHHHH
Confidence 776443 22334455554
No 46
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=92.04 E-value=1.4 Score=37.70 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.+.+.++.+.|+++||+.++.+. ...+....+.+..+.... +.++.+|-- ++...+.++|++++...
T Consensus 15 ~~~l~~~~~~gv~~v~lR~k~~~----~~~~~~~a~~l~~~~~~~--~~~liin~~-------~~la~~~~~dGvHl~~~ 81 (180)
T PF02581_consen 15 LEQLEAALAAGVDLVQLREKDLS----DEELLELARRLAELCQKY--GVPLIINDR-------VDLALELGADGVHLGQS 81 (180)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSS-----HHHHHHHHHHHHHHHHHT--TGCEEEES--------HHHHHHCT-SEEEEBTT
T ss_pred HHHHHHHHHCCCcEEEEcCCCCC----ccHHHHHHHHHHHHhhcc--eEEEEecCC-------HHHHHhcCCCEEEeccc
Confidence 34455677889999999999644 455544444444444433 256777763 56667899999999876
Q ss_pred CC
Q 020229 269 RS 270 (329)
Q Consensus 269 ~~ 270 (329)
..
T Consensus 82 ~~ 83 (180)
T PF02581_consen 82 DL 83 (180)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 47
>PRK08005 epimerase; Validated
Probab=91.92 E-value=2 Score=37.97 Aligned_cols=85 Identities=13% Similarity=0.238 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCCCeEEec--CCccCCCC--ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFD--EPLLVMDL--DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD--EP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
.+.++++++.++|+++|.+| |-.+.-++ .+..++ .++... +.++-+|+..-|+...++.+.++++|.
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~----~l~~~t-----~~~~DvHLMv~~P~~~i~~~~~~gad~ 84 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQ----AVAQQT-----RHPLSFHLMVSSPQRWLPWLAAIRPGW 84 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHH----HHHhcC-----CCCeEEEeccCCHHHHHHHHHHhCCCE
Confidence 46788899999999999999 22222222 233332 222222 256788999888988999999999998
Q ss_pred EEEEcC--CCchhHHHHhhh
Q 020229 263 ITIENS--RSDEKLLSVFRE 280 (329)
Q Consensus 263 ~~lE~~--~~~~~~l~~l~~ 280 (329)
+++=+- ....+.++.+++
T Consensus 85 It~H~Ea~~~~~~~l~~Ik~ 104 (210)
T PRK08005 85 IFIHAESVQNPSEILADIRA 104 (210)
T ss_pred EEEcccCccCHHHHHHHHHH
Confidence 876554 334466666664
No 48
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=90.41 E-value=1.3 Score=37.80 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=39.0
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
+++..++|+++||+|.+ ++++++..++.++... ..+.+-.+ |+.+ +-+..+.++++|+|++=.
T Consensus 93 ~~ea~~~g~d~I~lD~~------~~~~~~~~v~~l~~~~------~~v~ie~S-GGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 93 AEEALEAGADIIMLDNM------SPEDLKEAVEELRELN------PRVKIEAS-GGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHTT-SEEEEES-------CHHHHHHHHHHHHHHT------TTSEEEEE-SSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHhCCCEEEecCc------CHHHHHHHHHHHhhcC------CcEEEEEE-CCCCHHHHHHHHhcCCCEEEcCh
Confidence 44455699999999965 4566655444443332 12456667 7653 467788899999998753
No 49
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=90.15 E-value=4.2 Score=34.57 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEc
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~ 267 (329)
+.+.++++.+.|+++||++.+... ......+...+....... +.++.+| + -++...+.++|+++++.
T Consensus 14 ~~~~l~~l~~~g~~~i~lr~~~~~----~~~~~~~~~~i~~~~~~~--~~~l~~~----~---~~~~a~~~g~~~vh~~~ 80 (196)
T cd00564 14 LLEVVEAALKGGVTLVQLREKDLS----ARELLELARALRELCRKY--GVPLIIN----D---RVDLALAVGADGVHLGQ 80 (196)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHHHHHHHHHHHHh--CCeEEEe----C---hHHHHHHcCCCEEecCc
Confidence 456677788899999999987643 222222233333333222 1333333 2 25667889999999997
Q ss_pred CC
Q 020229 268 SR 269 (329)
Q Consensus 268 ~~ 269 (329)
..
T Consensus 81 ~~ 82 (196)
T cd00564 81 DD 82 (196)
T ss_pred cc
Confidence 54
No 50
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=89.96 E-value=3.5 Score=35.78 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=56.5
Q ss_pred HHHHHHHHHHCCCCeEEecCCc--cCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPL--LVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
+.++.+++.++||+||-+|=.. +..+++-.. -.++.+ .+....+.-.-+|+---|+.+..+.+.+.+++.+.|
T Consensus 19 L~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~--pvV~sl---R~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tf 93 (224)
T KOG3111|consen 19 LAAECKKMLDAGADWLHLDVMDGHFVPNITFGP--PVVESL---RKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTF 93 (224)
T ss_pred HHHHHHHHHHcCCCeEEEeeecccccCCcccch--HHHHHH---HhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEE
Confidence 5567788999999999999332 232332111 112222 222222234567888889999999999999998876
Q ss_pred EcC--CCchhHHHHhhh
Q 020229 266 ENS--RSDEKLLSVFRE 280 (329)
Q Consensus 266 E~~--~~~~~~l~~l~~ 280 (329)
-+- ....+..+.+++
T Consensus 94 H~E~~q~~~~lv~~ir~ 110 (224)
T KOG3111|consen 94 HYEATQKPAELVEKIRE 110 (224)
T ss_pred EEeeccCHHHHHHHHHH
Confidence 654 455677777764
No 51
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=89.89 E-value=13 Score=33.13 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH----HHHHHHHhC--CCcEEEEEcCCCchh
Q 020229 200 ASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN----DIIHSIIDM--DADVITIENSRSDEK 273 (329)
Q Consensus 200 ~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~----~i~~~l~~~--~~d~~~lE~~~~~~~ 273 (329)
-+++-|-|-.|-. .++++.+-|.+-+..+. .. ++++++|+-++|=. .+++.+.+. +.+.+-+|..+ ++
T Consensus 95 e~VvAiGEiGLe~-~t~~E~evf~~QL~LA~-e~--dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~N--~e 168 (254)
T COG1099 95 EDVVAIGEIGLEE-ATDEEKEVFREQLELAR-EL--DVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDHVN--EE 168 (254)
T ss_pred CCeeEeeeccccc-CCHHHHHHHHHHHHHHH-Hc--CCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhccc--HH
Confidence 3467777776653 44555555655554443 33 48899999999853 566666544 44666666654 33
Q ss_pred HHH-HhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 274 LLS-VFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 274 ~l~-~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
.++ ++. .+-.+++=|-+. -=|+++-.+.+++- +++++++|.|||
T Consensus 169 tv~~vld----~e~~vGlTvqPg----Klt~~eAveIV~ey----~~~r~ilnSD~~ 213 (254)
T COG1099 169 TVDEVLD----EEFYVGLTVQPG----KLTVEEAVEIVREY----GAERIILNSDAG 213 (254)
T ss_pred HHHHHHh----ccceEEEEecCC----cCCHHHHHHHHHHh----CcceEEEecccc
Confidence 333 343 233444433332 33455544444432 489999999997
No 52
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=89.75 E-value=18 Score=34.34 Aligned_cols=132 Identities=12% Similarity=0.152 Sum_probs=72.7
Q ss_pred HHHHHHHHHHCCCCeEEecC------CccCCCCCh-HHHHHHHHHHHHHHcCCCCCceeEEee--cccChHHHHHHHHhC
Q 020229 188 YKEVISELKAAGASWIQFDE------PLLVMDLDS-HKLHAFIHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIIDM 258 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDE------P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~lH~--C~Gn~~~i~~~l~~~ 258 (329)
..+.+++|.++|+++|.+== .++...... ...+ .++.+.+..+ +.++...+ .+|+..+ ++...++
T Consensus 27 ~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e----~i~~~~~~~~-~~~~~~ll~pg~~~~~d-l~~a~~~ 100 (337)
T PRK08195 27 VRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEE----YIEAAAEVVK-QAKIAALLLPGIGTVDD-LKMAYDA 100 (337)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHH----HHHHHHHhCC-CCEEEEEeccCcccHHH-HHHHHHc
Confidence 34456778899999999931 122211111 1111 2223323333 34555443 3456544 4666788
Q ss_pred CCcEEEEEcCCCc-hhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 259 DADVITIENSRSD-EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 259 ~~d~~~lE~~~~~-~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
++|.+.+-...+. ....+.+..-...|..+...+.++. .-++|.+.+.++++.+ .|++.+++.-.-|
T Consensus 101 gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G 168 (337)
T PRK08195 101 GVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSH---MAPPEKLAEQAKLMES-YGAQCVYVVDSAG 168 (337)
T ss_pred CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEecc---CCCHHHHHHHHHHHHh-CCCCEEEeCCCCC
Confidence 9998877654322 2222223211124667777777663 3588888888888754 5788888765443
No 53
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=89.28 E-value=6.1 Score=35.06 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCCeEEecCCc--cCCCCC--hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPL--LVMDLD--SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~--l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
.+.++++++.++|+++|-+|=.- +.-+++ +..+ ++++... +.++-+|.=--|+...++.+.+.++|.
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v----~~l~~~t-----~~p~DvHLMV~~p~~~i~~fa~agad~ 87 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVV----KALRKIT-----DLPLDVHLMVENPDRYIEAFAKAGADI 87 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHH----HHHhhcC-----CCceEEEEecCCHHHHHHHHHHhCCCE
Confidence 46778899999999999999332 222222 2332 2223211 357788888888999999999999998
Q ss_pred EEEEcC--CCchhHHHHhhh
Q 020229 263 ITIENS--RSDEKLLSVFRE 280 (329)
Q Consensus 263 ~~lE~~--~~~~~~l~~l~~ 280 (329)
|+|=+- ....+.++.+++
T Consensus 88 It~H~E~~~~~~r~i~~Ik~ 107 (220)
T COG0036 88 ITFHAEATEHIHRTIQLIKE 107 (220)
T ss_pred EEEEeccCcCHHHHHHHHHH
Confidence 876543 234566666663
No 54
>PRK10812 putative DNAse; Provisional
Probab=89.20 E-value=4.7 Score=36.89 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=63.8
Q ss_pred CeEEecCCccCCCC--C--hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCC---cEEEEEcCCCc-h
Q 020229 201 SWIQFDEPLLVMDL--D--SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA---DVITIENSRSD-E 272 (329)
Q Consensus 201 ~~IQiDEP~l~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~---d~~~lE~~~~~-~ 272 (329)
+++-|=|-.|-+.. + ..+.+.|...++.+.+ . +.++.+|+ ++...++++.|.+.++ .++ +=...++ .
T Consensus 88 ~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e-~--~~Pv~iH~-r~a~~~~l~iL~~~~~~~~~~v-~H~fsG~~~ 162 (265)
T PRK10812 88 GVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRE-L--NKPVIVHT-RDARADTLAILREEKVTDCGGV-LHCFTEDRE 162 (265)
T ss_pred CEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHH-h--CCCeEEEe-eCchHHHHHHHHhhcCCCCCEE-EEeecCCHH
Confidence 45666665555421 1 2233445555555443 3 36889995 4777788888876544 233 2222333 3
Q ss_pred hHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 273 KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 273 ~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
...+.+. .|-.+++|-+-+. . =.+.++++++.+|.+++.+.+||.
T Consensus 163 ~a~~~~~----~G~~is~~g~~t~----~----~~~~~~~~~~~ipldrlLlETD~P 207 (265)
T PRK10812 163 TAGKLLD----LGFYISFSGIVTF----R----NAEQLRDAARYVPLDRLLVETDSP 207 (265)
T ss_pred HHHHHHH----CCCEEEECeeeec----C----ccHHHHHHHHhCChhhEEEecCCC
Confidence 3333443 3555655533221 1 135678888999999999999973
No 55
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.64 E-value=18 Score=32.99 Aligned_cols=127 Identities=18% Similarity=0.305 Sum_probs=70.1
Q ss_pred HHHHHHHCCCCeEEecC----CccCCCCC-hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEE-
Q 020229 191 VISELKAAGASWIQFDE----PLLVMDLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT- 264 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDE----P~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~- 264 (329)
.++.+.++|+++|-|-- |... .++ .++++++.++++.+.+.. +.++.+-++. .+++..-++.+++.+.
T Consensus 29 ~a~~~~~~GAdiIDIG~~st~p~~~-~i~~~~E~~rl~~~v~~i~~~~--~~plSIDT~~---~~v~e~al~~G~~iINd 102 (257)
T cd00739 29 HAEKMIAEGADIIDIGGESTRPGAD-PVSVEEELERVIPVLEALRGEL--DVLISVDTFR---AEVARAALEAGADIIND 102 (257)
T ss_pred HHHHHHHCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHhcC--CCcEEEeCCC---HHHHHHHHHhCCCEEEe
Confidence 35667789999999972 3322 223 355677777777776544 3567777772 3467777777877654
Q ss_pred EEcCCCchhHHHHhhhcccCCCeeeeeeecC-CCCCC--------CCHHHH----HHHHHHHHHhcC--CCceEeCCCCC
Q 020229 265 IENSRSDEKLLSVFREGVKYGAGIGPGVYDI-HSPRI--------PSTEEI----ADRINKMLAVLE--TNILWVNPDLH 329 (329)
Q Consensus 265 lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~-~~~~~--------e~~e~i----~~ri~~a~~~v~--~~~l~ispdCG 329 (329)
+.......+..+.+++ .+..+++ +.. ..+.. ...+++ .++++++. ..| .+++++.|..|
T Consensus 103 isg~~~~~~~~~l~~~---~~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~Gi~~~~Ii~DPg~g 176 (257)
T cd00739 103 VSGGSDDPAMLEVAAE---YGAPLVL--MHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAE-SAGVARNRIILDPGIG 176 (257)
T ss_pred CCCCCCChHHHHHHHH---cCCCEEE--ECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHH-HcCCCHHHEEEecCCC
Confidence 3322222556666664 2444444 222 11111 112333 33333333 334 57999999755
No 56
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=88.03 E-value=20 Score=39.89 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEe-ecc---cC------hHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTH-MCY---SN------FND 250 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH-~C~---Gn------~~~ 250 (329)
++++.+.|.+.++.|.+.|+|+|-+. ++ .+..+.++...+.+.+.+....+.++.+. +|+ |. ...
T Consensus 143 ~del~~~y~eq~~~L~~~GvD~iliE--Ti---~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~ 217 (1178)
T TIGR02082 143 YDELVDAYTEQAKGLLDGGVDLLLIE--TC---FDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEA 217 (1178)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe--cc---CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHH
Confidence 47788899999999999999988776 11 12344555555555543322224677777 664 21 235
Q ss_pred HHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeee------cCCCCCCCCHHHHHHHHHHHHHhcCCCceEe
Q 020229 251 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVY------DIHSPRIPSTEEIADRINKMLAVLETNILWV 324 (329)
Q Consensus 251 i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvv------d~~~~~~e~~e~i~~ri~~a~~~v~~~~l~i 324 (329)
.+..+..++++++.+=.+..+......++. +.......+++. +.....-++|++.++.+++..+.-+.+ +|
T Consensus 218 ~~~~l~~~~~~avGlNCs~gP~~m~~~l~~-l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~ggv~--II 294 (1178)
T TIGR02082 218 FLTSLEHAGIDMIGLNCALGPDEMRPHLKH-LSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGGLN--IV 294 (1178)
T ss_pred HHHHHhcCCCCEEEeCCCCCHHHHHHHHHH-HHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCCCc--EE
Confidence 677777789999999887655555444442 101111233332 222245578999888888876642222 34
Q ss_pred CCCCC
Q 020229 325 NPDLH 329 (329)
Q Consensus 325 spdCG 329 (329)
.-.||
T Consensus 295 GGCCG 299 (1178)
T TIGR02082 295 GGCCG 299 (1178)
T ss_pred EecCC
Confidence 45555
No 57
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=87.99 E-value=4.9 Score=35.50 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=41.4
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
.++.+.++|+.+||+-++.+. ..++..+...+..+.+.. +.++.+|-- ++.-.++++|++|+....
T Consensus 24 ~l~~~l~~G~~~vqLR~k~~~----~~~~~~la~~l~~~~~~~--~~~liInd~-------~~lA~~~~adGVHlg~~d 89 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKDRR----DEEVEADVVAAIALGRRY--QARLFINDY-------WRLAIKHQAYGVHLGQED 89 (211)
T ss_pred HHHHHHhCCCCEEEEcCCCCC----HHHHHHHHHHHHHHHHHh--CCeEEEeCH-------HHHHHHcCCCEEEcChHh
Confidence 377788999999999998864 344433333333333333 245566632 455567888899887543
No 58
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=87.71 E-value=12 Score=33.48 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCCeEEec--CCccCCCCC--hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFD--EPLLVMDLD--SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD--EP~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
.+.++++.+.++|++++.+| |-.+.-+++ ...+ +.+.... + +..+-+|+=.-+....++.+.++++|.
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v----~~lr~~~---~-~~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVV----KSLRKHL---P-NTFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHH----HHHHhcC---C-CCCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 36778899999999999999 222222221 2222 2222221 1 234455555456777789999999999
Q ss_pred EEEEcCCCc---hhHHHHhhhcccCCCeeee
Q 020229 263 ITIENSRSD---EKLLSVFREGVKYGAGIGP 290 (329)
Q Consensus 263 ~~lE~~~~~---~~~l~~l~~~~~~~~~i~~ 290 (329)
+++=+.... .+.++.+++ .|+.+++
T Consensus 92 itvH~ea~~~~~~~~l~~ik~---~G~~~gv 119 (228)
T PTZ00170 92 FTFHIEATEDDPKAVARKIRE---AGMKVGV 119 (228)
T ss_pred EEEeccCCchHHHHHHHHHHH---CCCeEEE
Confidence 888665432 344444443 3544443
No 59
>PRK14057 epimerase; Provisional
Probab=87.48 E-value=5.8 Score=36.08 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHCCCCeEEec--CCccCCCC--ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFD--EPLLVMDL--DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD--EP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
.+.++++.+.++|++++.+| |-.+.-++ .+..++++ .+ +.++-+|+.--|+...++.+.++++|.
T Consensus 33 ~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i-------~~----~~p~DvHLMV~~P~~~i~~~~~aGad~ 101 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-------PQ----TFIKDVHLMVADQWTAAQACVKAGAHC 101 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHh-------cc----CCCeeEEeeeCCHHHHHHHHHHhCCCE
Confidence 36778899999999999999 22222222 23333222 11 256678988888888899999999998
Q ss_pred EEEEcC--CCchhHHHHhhh
Q 020229 263 ITIENS--RSDEKLLSVFRE 280 (329)
Q Consensus 263 ~~lE~~--~~~~~~l~~l~~ 280 (329)
+++=+- ....+.++.+++
T Consensus 102 It~H~Ea~~~~~~~l~~Ir~ 121 (254)
T PRK14057 102 ITLQAEGDIHLHHTLSWLGQ 121 (254)
T ss_pred EEEeeccccCHHHHHHHHHH
Confidence 776544 334456666664
No 60
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=87.04 E-value=5.1 Score=35.88 Aligned_cols=84 Identities=21% Similarity=0.352 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHCCCCeEEec--CCccCCCC--ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFD--EPLLVMDL--DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD--EP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
-+.++++.+.+ |++++.+| |-.+.-++ .+..+ +.++... +.++-+|+.--|+...++.+.++++|.
T Consensus 16 ~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i----~~ir~~t-----~~~~DvHLMv~~P~~~i~~~~~aGad~ 85 (229)
T PRK09722 16 KFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFV----SQVKKLA-----SKPLDVHLMVTDPQDYIDQLADAGADF 85 (229)
T ss_pred HHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHH----HHHHhcC-----CCCeEEEEEecCHHHHHHHHHHcCCCE
Confidence 35667788877 99999999 22222222 23333 2222221 256788998888988999999999997
Q ss_pred EEEEcC--C-CchhHHHHhhh
Q 020229 263 ITIENS--R-SDEKLLSVFRE 280 (329)
Q Consensus 263 ~~lE~~--~-~~~~~l~~l~~ 280 (329)
+++=+- . ...+.++.+++
T Consensus 86 it~H~Ea~~~~~~~~i~~Ik~ 106 (229)
T PRK09722 86 ITLHPETINGQAFRLIDEIRR 106 (229)
T ss_pred EEECccCCcchHHHHHHHHHH
Confidence 665443 2 33455556653
No 61
>PRK08508 biotin synthase; Provisional
Probab=86.22 E-value=21 Score=32.81 Aligned_cols=123 Identities=16% Similarity=0.097 Sum_probs=68.2
Q ss_pred HHHHHHCCCCeEEe--cCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEEEcC
Q 020229 192 ISELKAAGASWIQF--DEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 192 i~~l~~aG~~~IQi--DEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~lE~~ 268 (329)
++...+.|++-+.+ ..+.+ ++..++.+.+.++.+.+..+ .+.+|.|.|.. .+.+..|.+.++|.+++...
T Consensus 49 a~~a~~~g~~~~~lv~sg~~~----~~~~~e~~~ei~~~ik~~~p---~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lE 121 (279)
T PRK08508 49 AKMAKANGALGFCLVTSGRGL----DDKKLEYVAEAAKAVKKEVP---GLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121 (279)
T ss_pred HHHHHHCCCCEEEEEeccCCC----CcccHHHHHHHHHHHHhhCC---CcEEEecCCCCCHHHHHHHHHcCCCEEccccc
Confidence 44455679875544 23322 22344555666666654332 34567787764 46889999999999996532
Q ss_pred C---------Cc---hhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 269 R---------SD---EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 269 ~---------~~---~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
. .. .+.++.+..-...|-.+.-|+|-. ..||+|++++.+... +.++++.+-++
T Consensus 122 t~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~G---lGEt~ed~~~~l~~l-r~L~~~svpl~ 186 (279)
T PRK08508 122 TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFG---LGESWEDRISFLKSL-ASLSPHSTPIN 186 (279)
T ss_pred chHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEe---cCCCHHHHHHHHHHH-HcCCCCEEeeC
Confidence 1 11 233333332111222333333322 269999999999877 45666645443
No 62
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=85.76 E-value=11 Score=34.01 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHH--------------HHHHHHHHHHcCCCCCceeEEeecccC-----h
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLH--------------AFIHSFRITNCGVQDTTQIHTHMCYSN-----F 248 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~lH~C~Gn-----~ 248 (329)
..++++.+.++|+++|.+|=|.--...+...++ ...+.++.+.+.. +.++++-+++.- .
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~lm~y~n~~~~~G~ 93 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVLMGYYNPILQYGL 93 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEEEEecCHHHHhCH
Confidence 345577889999999999966522222322222 1223334443322 245555446321 3
Q ss_pred HHHHHHHHhCCCcEEEE
Q 020229 249 NDIIHSIIDMDADVITI 265 (329)
Q Consensus 249 ~~i~~~l~~~~~d~~~l 265 (329)
...++.+.++++|++.+
T Consensus 94 ~~fi~~~~~aG~~giii 110 (242)
T cd04724 94 ERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 66788889999999988
No 63
>PRK08999 hypothetical protein; Provisional
Probab=85.68 E-value=6.5 Score=36.61 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+.++++.+.|+++||+-++.+. ..++..+.+.+..+++.. +.++.+|-- ++...++++|++|+-...
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~~~~l~~~~~~~--~~~liind~-------~~la~~~~~~GvHl~~~d 214 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQLP----PAAYRALARAALGLCRRA--GAQLLLNGD-------PELAEDLGADGVHLTSAQ 214 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCCCC----HHHHHHHHHHHHHHHHHh--CCEEEEECc-------HHHHHhcCCCEEEcChhh
Confidence 3445566899999999999743 445544455555555433 256667633 466678899999998654
No 64
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=85.59 E-value=28 Score=31.66 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCCeEEecCCcc---CCCCCh-HHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLL---VMDLDS-HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 263 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~ 263 (329)
..+.++.+.++|+++|-|--.+- ...+++ ++.+++..+++.+.+.. +.++.+|++. + .++..-++.+++.|
T Consensus 25 ~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~--~~plsiDT~~--~-~vi~~al~~G~~iI 99 (257)
T TIGR01496 25 AVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP--DVPISVDTYR--A-EVARAALEAGADII 99 (257)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCCC--H-HHHHHHHHcCCCEE
Confidence 34446677899999999952211 112233 35566777777766443 3678999983 3 35666666687754
Q ss_pred EEEcCCCchhHHHHhhh
Q 020229 264 TIENSRSDEKLLSVFRE 280 (329)
Q Consensus 264 ~lE~~~~~~~~l~~l~~ 280 (329)
.==......+.++.+++
T Consensus 100 Nsis~~~~~~~~~l~~~ 116 (257)
T TIGR01496 100 NDVSGGQDPAMLEVAAE 116 (257)
T ss_pred EECCCCCCchhHHHHHH
Confidence 31111113456666664
No 65
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=85.34 E-value=29 Score=31.60 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecC----CccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDE----PLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII 256 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDE----P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~ 256 (329)
++++.+...++++.|.+.|++-|.|.. |... ..+++.+.++.....++.+.+. .++++.+=|.+...-+..-.
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~-~~~~etvaaM~~i~~~v~~~~~--~p~GVnvL~nd~~aalaiA~ 100 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPK-RVGPETVAAMARIAREVRREVS--VPVGVNVLRNDPKAALAIAA 100 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccC-CCCHHHHHHHHHHHHHHHHhCC--CCEEeeeecCCCHHHHHHHH
Confidence 567777788889999999999777653 5533 2556666666666666665553 67888888744443444445
Q ss_pred hCCCcEEEEEcC-----CC-------chhHHHHhhhcccCCCeeeeeeecCC-CCCCCCHHHHHHHHHHHHHhcCCCceE
Q 020229 257 DMDADVITIENS-----RS-------DEKLLSVFREGVKYGAGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLETNILW 323 (329)
Q Consensus 257 ~~~~d~~~lE~~-----~~-------~~~~l~~l~~~~~~~~~i~~Gvvd~~-~~~~e~~e~i~~ri~~a~~~v~~~~l~ 323 (329)
..++|-+-++.. .. ..+.++.-+ .+..+ ..++.-|..+ +..+.+. .+...++.+++...++=|+
T Consensus 101 A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~-~l~a~-v~ilaDV~~kh~~~l~~~-~~~~~~~~a~~~~~aDavi 177 (254)
T PF03437_consen 101 ATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRK-RLGAD-VKILADVHVKHSSPLATR-DLEEAAKDAVERGGADAVI 177 (254)
T ss_pred HhCCCEEEecCEEceecccCccccccHHHHHHHHH-HcCCC-eEEEeeechhhcccCCCC-CHHHHHHHHHHhcCCCEEE
Confidence 566776666532 11 123333322 34445 6666666664 3333331 2444566777777778787
Q ss_pred eCC
Q 020229 324 VNP 326 (329)
Q Consensus 324 isp 326 (329)
+|-
T Consensus 178 VtG 180 (254)
T PF03437_consen 178 VTG 180 (254)
T ss_pred ECC
Confidence 763
No 66
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=84.92 E-value=7.9 Score=33.47 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCC-ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDL-DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
+.+.++.+.++|+++||+|........ .....+ ....+.+..+ .++.+|+-.-|..+.++.+.++++|++.+
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~----~~~~i~~~~~--~~~~v~l~~~d~~~~~~~~~~~g~dgv~v 86 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPP----VVKALRKHTD--LPLDVHLMVENPERYIEAFAKAGADIITF 86 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHH----HHHHHHhhCC--CcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 445677888999999999854322110 110011 1122222121 23445665445556677778888888543
No 67
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=84.66 E-value=9.6 Score=33.33 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCeEEecC
Q 020229 188 YKEVISELKAAGASWIQFDE 207 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDE 207 (329)
+.+.++.+.++|+++||+|.
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~ 37 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDV 37 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeC
Confidence 45567788999999999985
No 68
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.19 E-value=4.7 Score=37.40 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
++.+..++|+++||+| +++++++++.++.++. .. ..+.+-.. |+.+ +-+....++++|+|++=+
T Consensus 211 ea~eal~~gaDiI~LD------nm~~e~vk~av~~~~~----~~--~~v~ieaS-GGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLLD------NFPVWQTQEAVQRRDA----RA--PTVLLESS-GGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEeC------CCCHHHHHHHHHHHhc----cC--CCEEEEEE-CCCCHHHHHHHHhcCCCEEEeCh
Confidence 4455567999999999 5556676444443222 22 23456666 7654 567888999999999864
No 69
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.85 E-value=5.7 Score=36.85 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
+++++..++|+++||+| .++++++++.++.+ + ..+.+-.. |+.+ +-+.....+++|.|+.=+
T Consensus 208 eea~~a~~agaDiImLD------nmspe~l~~av~~~-------~--~~~~leaS-GGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 208 AAAEEAAAAGADIIMLD------NMSLEQIEQAITLI-------A--GRSRIECS-GNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHcCCCEEEEC------CCCHHHHHHHHHHh-------c--CceEEEEE-CCCCHHHHHHHHhcCCCEEEeCc
Confidence 35566678999999999 45566764443322 1 13345666 6654 567888899999999875
No 70
>COG3462 Predicted membrane protein [Function unknown]
Probab=83.75 E-value=1.4 Score=34.22 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 020229 15 RELKFALESFWDGKSSAEDLQKVSADL 41 (329)
Q Consensus 15 ~eL~~a~~~~~~g~is~~el~~~~~~~ 41 (329)
|..--++|+|.+|+||+||++++.++.
T Consensus 89 RA~eIlkER~AkGEItEEEY~r~~~~i 115 (117)
T COG3462 89 RAEEILKERYAKGEITEEEYRRIIRTI 115 (117)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 566678999999999999999998765
No 71
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=83.64 E-value=48 Score=37.09 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc----cC------hHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY----SN------FND 250 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~----Gn------~~~ 250 (329)
++++.+.|.+.++.|.+.|+|+|-+. ++ .+..+.++...+.+...+....+.++.+...+ |. ...
T Consensus 159 ~del~~~y~eQi~~L~e~GVDllliE--Ti---~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea 233 (1229)
T PRK09490 159 FDELVAAYREQTRGLIEGGADLILIE--TI---FDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEA 233 (1229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe--ee---CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHH
Confidence 47788899999999999999988876 11 22344445555555553322223555555544 21 235
Q ss_pred HHHHHHhCCCcEEEEEcCCCchhHHHHhhhcc-cCCCeee----eeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 251 IIHSIIDMDADVITIENSRSDEKLLSVFREGV-KYGAGIG----PGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 251 i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~-~~~~~i~----~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
.+..+..++++++.+=.+.++.+....+...- ..+..++ .|..+.....-++|++.++.+.+..+. |.-+ +|.
T Consensus 234 ~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~-G~v~-IIG 311 (1229)
T PRK09490 234 FWNSLRHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAES-GFLN-IVG 311 (1229)
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCCC-EEE
Confidence 66666778999999887765555544444200 0112221 343333334567999988888877653 3111 344
Q ss_pred CCCC
Q 020229 326 PDLH 329 (329)
Q Consensus 326 pdCG 329 (329)
-.||
T Consensus 312 GCCG 315 (1229)
T PRK09490 312 GCCG 315 (1229)
T ss_pred ecCC
Confidence 5555
No 72
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.63 E-value=7.1 Score=35.96 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEcC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENS 268 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~~ 268 (329)
++++...++|+++||+|.|. .+.++. +...+..+.+ .+.+=.. |+.+ +-+..+.++++|++++=+.
T Consensus 193 eea~~A~~~GaDiI~LDn~~------~e~l~~---~v~~~~~~~~---~~~ieAs-GgIt~~ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNMS------VEEIKE---VVAYRNANYP---HVLLEAS-GNITLENINAYAKSGVDAISSGSL 259 (273)
T ss_pred HHHHHHHHcCCCEEEECCCC------HHHHHH---HHHHhhccCC---CeEEEEE-CCCCHHHHHHHHHcCCCEEEeChh
Confidence 35566678999999999764 445533 3332222222 2334445 7764 5678889999999998653
No 73
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=83.61 E-value=3.2 Score=24.76 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 020229 15 RELKFALESFWDGKSSAEDLQKVSADL 41 (329)
Q Consensus 15 ~eL~~a~~~~~~g~is~~el~~~~~~~ 41 (329)
.+|....+.|.+|.||.+|+.+.-.+.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 578888889999999999999875543
No 74
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=82.51 E-value=7.5 Score=35.71 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=42.1
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEcC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENS 268 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~~ 268 (329)
++.+..++|+++|++| ++++++++ ++.+.+ +..+ .+.+- |-||.+ +-++...+++||.||+=+-
T Consensus 200 ~~~eAl~agaDiImLD------Nm~~e~~~---~av~~l--~~~~--~~~lE-aSGgIt~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 200 EAEEALEAGADIIMLD------NMSPEELK---EAVKLL--GLAG--RALLE-ASGGITLENIREYAETGVDVISVGAL 264 (280)
T ss_pred HHHHHHHcCCCEEEec------CCCHHHHH---HHHHHh--ccCC--ceEEE-EeCCCCHHHHHHHhhcCCCEEEeCcc
Confidence 4556667999999999 45566663 333333 3332 33344 448765 5678888999999998754
No 75
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.40 E-value=7.5 Score=35.88 Aligned_cols=66 Identities=18% Similarity=0.355 Sum_probs=43.2
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
+++...++|+++||+|-+ +++.++..++.++.. +.+ ..+.+-.. |+.+ +-+..+.++++|+|+.=.
T Consensus 194 ea~~a~~agaDiI~LDn~------~~e~l~~~v~~l~~~--~~~--~~~~leaS-GGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 194 DALKAAKAGADIIMLDNM------TPEEIREVIEALKRE--GLR--ERVKIEVS-GGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHcCcCEEEECCC------CHHHHHHHHHHHHhc--CcC--CCEEEEEE-CCCCHHHHHHHHHcCCCEEEeCh
Confidence 455667899999999955 456664444433221 222 23456666 7664 568888999999999864
No 76
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.33 E-value=7.3 Score=36.19 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~lE~ 267 (329)
++.+..++|+++||+| .++++.++...+.++.. .+ .+.+-.. |+. .+-++.+..+++|++++=.
T Consensus 208 ea~eA~~~GaD~I~LD------n~~~e~l~~av~~~~~~---~~---~i~leAs-GGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 208 QVQEALEYGADIIMLD------NMPVDLMQQAVQLIRQQ---NP---RVKIEAS-GNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHHHcCCCEEEEC------CCCHHHHHHHHHHHHhc---CC---CeEEEEE-CCCCHHHHHHHHHcCCCEEEEch
Confidence 4555668999999999 45566664444433221 11 2234444 554 3567788899999999764
No 77
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=82.15 E-value=14 Score=32.00 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHCCCCeEEec---CCccCC-CCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFD---EPLLVM-DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD---EP~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
.+.++++.+.++|+++|.+| -|.... ....+.+ +.+.+..+ .++.+|+=.-+....++.+.++++|+
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v-------~~i~~~~~--~~v~v~lm~~~~~~~~~~~~~~gadg 82 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVL-------EALRKYTD--LPIDVHLMVENPDRYIEDFAEAGADI 82 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHH-------HHHHhcCC--CcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 35667888999999999997 122110 0112222 22222221 34445554334556777888888998
Q ss_pred EEE
Q 020229 263 ITI 265 (329)
Q Consensus 263 ~~l 265 (329)
+.+
T Consensus 83 v~v 85 (210)
T TIGR01163 83 ITV 85 (210)
T ss_pred EEE
Confidence 555
No 78
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=81.84 E-value=6.9 Score=36.11 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
+++++..++|+++||+| .++++++...++.++ +.. ..+.+-.. |+.+ +-+..+.++++|.|+.=.
T Consensus 199 eea~ea~~~GaDiI~lD------n~~~e~l~~~v~~l~----~~~--~~~~leas-GGI~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 199 EQALTVLQASPDILQLD------KFTPQQLHHLHERLK----FFD--HIPTLAAA-GGINPENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHHHHHHHcCcCEEEEC------CCCHHHHHHHHHHHh----ccC--CCEEEEEE-CCCCHHHHHHHHhcCCCEEEeCc
Confidence 35566678999999999 556677644443332 222 23456777 6654 567888899999998653
No 79
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=81.75 E-value=37 Score=30.13 Aligned_cols=66 Identities=9% Similarity=-0.033 Sum_probs=39.8
Q ss_pred HHHHHHHHCC-CCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 190 EVISELKAAG-ASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 190 ~~i~~l~~aG-~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
+.++++.+.| +++||+-|+.+. ..++..+...+..+++.. ++++.++-- ++.-..+++|++|+-..
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~----~~~~~~~a~~l~~l~~~~--gv~liINd~-------~dlA~~~~adGVHLg~~ 96 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLD----EATFQKQAEKLVPVIQEA--GAAALIAGD-------SRIAGRVKADGLHIEGN 96 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCC----HHHHHHHHHHHHHHHHHh--CCEEEEeCH-------HHHHHHhCCCEEEECcc
Confidence 3456677889 799999998754 344433333334444332 245555521 55556778888888643
No 80
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=81.72 E-value=20 Score=30.77 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
+.++.+.+.|+++||+.++.+. ...+......+..+.+.. +.++.+|-- ++...+.++|++++...
T Consensus 17 ~~~~~~~~~g~~~v~lR~~~~~----~~~~~~~~~~l~~~~~~~--~~~l~i~~~-------~~la~~~g~~GvHl~~~ 82 (196)
T TIGR00693 17 NRVEAALKGGVTLVQLRDKGSN----TRERLALAEKLQELCRRY--GVPFIVNDR-------VDLALALGADGVHLGQD 82 (196)
T ss_pred HHHHHHHhcCCCEEEEecCCCC----HHHHHHHHHHHHHHHHHh--CCeEEEECH-------HHHHHHcCCCEEecCcc
Confidence 4456677899999999988643 333332233333333322 244555431 45556788888888543
No 81
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=81.62 E-value=6.8 Score=36.30 Aligned_cols=65 Identities=8% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
+++++..++|+++||+| .++++++++.++.++ ... ..+.+-.. |+.+ +-+..+.++++|.|+.=.
T Consensus 200 eqa~ea~~agaDiI~LD------n~~~e~l~~av~~~~----~~~--~~~~leaS-GGI~~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 200 KEAIAALRAQPDVLQLD------KFSPQQATEIAQIAP----SLA--PHCTLSLA-GGINLNTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHcCCCEEEEC------CCCHHHHHHHHHHhh----ccC--CCeEEEEE-CCCCHHHHHHHHhcCCCEEEECc
Confidence 35566678999999998 455677754444321 111 23345566 6654 567888899999997654
No 82
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=81.34 E-value=42 Score=30.46 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=70.3
Q ss_pred HHHHHHHHHCCCCeEEecCC------ccCCCCC-hHHHHHHHHHHHHHHcCCCCCceeE--EeecccChHHHHHHHHhCC
Q 020229 189 KEVISELKAAGASWIQFDEP------LLVMDLD-SHKLHAFIHSFRITNCGVQDTTQIH--THMCYSNFNDIIHSIIDMD 259 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP------~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~--lH~C~Gn~~~i~~~l~~~~ 259 (329)
.+.++.|.++|++.|.+==| +...... ....+ .++.+.+..+ +.++. ++.++++..+ ++...+.+
T Consensus 25 ~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e----~i~~~~~~~~-~~~~~~~~~~~~~~~~~-i~~a~~~g 98 (263)
T cd07943 25 RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEE----YLEAAAEALK-QAKLGVLLLPGIGTVDD-LKMAADLG 98 (263)
T ss_pred HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHH----HHHHHHHhcc-CCEEEEEecCCccCHHH-HHHHHHcC
Confidence 34456788999999988622 1111110 01111 1222222222 23332 2335677655 46667889
Q ss_pred CcEEEEEcCCCc-hhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 260 ADVITIENSRSD-EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 260 ~d~~~lE~~~~~-~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
+|.+.+-...+. ....+.++.....|..+.+.+.++.. -+++.+.+.++++. ..|.+.+++.-.
T Consensus 99 ~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~-~~G~d~i~l~DT 163 (263)
T cd07943 99 VDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHM---ASPEELAEQAKLME-SYGADCVYVTDS 163 (263)
T ss_pred CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccC---CCHHHHHHHHHHHH-HcCCCEEEEcCC
Confidence 999988765432 22333333211246677777766533 47788888888764 457888877543
No 83
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=80.97 E-value=5.5 Score=29.44 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 020229 15 RELKFALESFWDGKSSAEDLQKVSADLRSSIWKQM 49 (329)
Q Consensus 15 ~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q 49 (329)
++|.....+|..|+||.+++.+.+++...+.-..+
T Consensus 35 ~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~ 69 (79)
T PF05120_consen 35 RELAELQEALEAGEISEEEFERREDELLDRLEEAR 69 (79)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999999998876655444
No 84
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.88 E-value=6.8 Score=36.43 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEcC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENS 268 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~~ 268 (329)
+++++..++|+++||+| .++++++++.++. + + ..+.+-.. |+.+ +-+..+.+++||.||.=+-
T Consensus 216 eea~eA~~aGaDiImLD------nmspe~l~~av~~---~----~--~~~~lEaS-GGIt~~ni~~yA~tGVD~IS~gal 279 (294)
T PRK06978 216 AQLETALAHGAQSVLLD------NFTLDMMREAVRV---T----A--GRAVLEVS-GGVNFDTVRAFAETGVDRISIGAL 279 (294)
T ss_pred HHHHHHHHcCCCEEEEC------CCCHHHHHHHHHh---h----c--CCeEEEEE-CCCCHHHHHHHHhcCCCEEEeCcc
Confidence 45666778999999999 4556666443332 2 1 13345666 7654 5678888999999998643
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=80.48 E-value=46 Score=30.39 Aligned_cols=136 Identities=14% Similarity=0.181 Sum_probs=74.0
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCC-Ch-HHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDL-DS-HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITI 265 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~l 265 (329)
.+.++.|.++|+++|.+==|.....- .. ..+.. .+.++++.+...++.++..++=.++. .+-++...+.+++.+.+
T Consensus 23 ~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri 101 (266)
T cd07944 23 KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRV 101 (266)
T ss_pred HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEE
Confidence 34456788999999988766543210 00 00000 11223333222113555444322322 12344456788998887
Q ss_pred EcCCCc-hhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 266 ENSRSD-EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 266 E~~~~~-~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
-+.... .+..+.++.....+..+.+++.++.. -++|.+.+.++++.+ .|.+.+++.--.|
T Consensus 102 ~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G 162 (266)
T cd07944 102 AFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFG 162 (266)
T ss_pred ecccccHHHHHHHHHHHHHCCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 765432 23333333211236678888888754 478888888888765 4888888765443
No 86
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=80.13 E-value=47 Score=30.28 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=72.2
Q ss_pred CeEEecCCccCCCCC---hH--HHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCC--CcEEEEEcCCCchh
Q 020229 201 SWIQFDEPLLVMDLD---SH--KLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD--ADVITIENSRSDEK 273 (329)
Q Consensus 201 ~~IQiDEP~l~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~--~d~~~lE~~~~~~~ 273 (329)
+++-|=|-.|-+... +. +.+.|..-+..+. .. +.++++|+= +-.+++++.|.+.+ ..++.-=|+.+...
T Consensus 88 ~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~-~~--~lPviIH~R-~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~ 163 (256)
T COG0084 88 KVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAK-EL--NLPVIIHTR-DAHEDTLEILKEEGAPVGGVLHCFSGSAEE 163 (256)
T ss_pred CeEEEEecccCccccccccHHHHHHHHHHHHHHHH-Hc--CCCEEEEcc-ccHHHHHHHHHhcCCCCCEEEEccCCCHHH
Confidence 356666666554321 11 2233444444443 33 257899976 77888999998875 55555556666666
Q ss_pred HHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCC
Q 020229 274 LLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDL 328 (329)
Q Consensus 274 ~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdC 328 (329)
+.+.+.. |-.+++|-+-+... +..++++++.+|.+++.+=+||
T Consensus 164 a~~~~d~----G~yisisG~itfk~--------a~~~~ev~~~iPldrLL~ETDs 206 (256)
T COG0084 164 ARKLLDL----GFYISISGIVTFKN--------AEKLREVARELPLDRLLLETDA 206 (256)
T ss_pred HHHHHHc----CeEEEECceeecCC--------cHHHHHHHHhCCHhHeEeccCC
Confidence 6666652 55555555444332 6788999999999999998887
No 87
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.97 E-value=9.6 Score=35.23 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
+++++..++|+++||+| .++++++++.++.+ ++ ...+-.. |+.+ +-+.....++||.|+.=.
T Consensus 204 ee~~ea~~~gaDiImLD------n~s~e~l~~av~~~-------~~--~~~leaS-GgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLD------NFSLDDLREGVELV-------DG--RAIVEAS-GNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred HHHHHHHhcCCCEEEEC------CCCHHHHHHHHHHh-------CC--CeEEEEE-CCCCHHHHHHHHhcCCCEEEeCc
Confidence 35566667999999999 45566764443332 11 2245566 7654 567777889999999764
No 88
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.38 E-value=52 Score=29.80 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccCC---CCC-hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLVM---DLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
...+.++.+.+.|+++|-|---+-.. ..+ .++++.+..+++.+.+.. +.++.+-++ ++ +++..-++..++.
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~--~~piSIDT~--~~-~v~~aaL~~g~~i 99 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP--DVPISVDTF--NA-EVAEAALKAGADI 99 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCC--cH-HHHHHHHHhCCCE
Confidence 34445667889999999888322111 122 345567778877776543 244444444 23 4666666766664
Q ss_pred EEEEcC--CCchhHHHHhhhcccCCCeeeeeeecCCCC-------CCCC----HHHHHHHHHHHHHhcC--CCceEeCCC
Q 020229 263 ITIENS--RSDEKLLSVFREGVKYGAGIGPGVYDIHSP-------RIPS----TEEIADRINKMLAVLE--TNILWVNPD 327 (329)
Q Consensus 263 ~~lE~~--~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~-------~~e~----~e~i~~ri~~a~~~v~--~~~l~ispd 327 (329)
+. +.. +...+..+.+++ .+..+++--.+.... .-.. .+.+.++++++. ..| .+++++.|.
T Consensus 100 IN-dis~~~~~~~~~~l~~~---~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~Gi~~~~IilDPg 174 (258)
T cd00423 100 IN-DVSGGRGDPEMAPLAAE---YGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAAT-EAGIPPEDIILDPG 174 (258)
T ss_pred EE-eCCCCCCChHHHHHHHH---cCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHH-HcCCCHHHEEEeCC
Confidence 43 222 112456666664 244344333332111 1222 334444444444 335 789999987
Q ss_pred CC
Q 020229 328 LH 329 (329)
Q Consensus 328 CG 329 (329)
-|
T Consensus 175 ~g 176 (258)
T cd00423 175 IG 176 (258)
T ss_pred CC
Confidence 54
No 89
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=78.13 E-value=20 Score=31.65 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=43.8
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+.+++..+.|++.+|+-|-.... .+..+..+.+..+++... +++.++=- ++.-.+.++|++|+-...
T Consensus 25 ~~ve~al~~Gv~~vQlR~K~~~~----~~~~~~a~~~~~lc~~~~--v~liINd~-------~dlA~~~~AdGVHlGq~D 91 (211)
T COG0352 25 EWVEAALKGGVTAVQLREKDLSD----EEYLALAEKLRALCQKYG--VPLIINDR-------VDLALAVGADGVHLGQDD 91 (211)
T ss_pred HHHHHHHhCCCeEEEEecCCCCh----HHHHHHHHHHHHHHHHhC--CeEEecCc-------HHHHHhCCCCEEEcCCcc
Confidence 33556778999999999887543 222222223344443332 44444322 555568899999998774
Q ss_pred Cc-hhHHHHhh
Q 020229 270 SD-EKLLSVFR 279 (329)
Q Consensus 270 ~~-~~~l~~l~ 279 (329)
.+ ....+.++
T Consensus 92 ~~~~~ar~~~~ 102 (211)
T COG0352 92 MPLAEARELLG 102 (211)
T ss_pred cchHHHHHhcC
Confidence 33 34444443
No 90
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=78.12 E-value=11 Score=35.05 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=41.4
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEcC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENS 268 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~~ 268 (329)
++.+..++|+++||+|-++ ++++++.++. + + ..+.+-.. |+.+ +-+..+.++++|.|++=+-
T Consensus 220 ea~ea~~~gaDiI~LDn~s------~e~~~~av~~---~----~--~~~~ieaS-GGI~~~ni~~yA~tGVD~Is~gal 282 (296)
T PRK09016 220 ELDQALKAGADIIMLDNFT------TEQMREAVKR---T----N--GRALLEVS-GNVTLETLREFAETGVDFISVGAL 282 (296)
T ss_pred HHHHHHHcCCCEEEeCCCC------hHHHHHHHHh---h----c--CCeEEEEE-CCCCHHHHHHHHhcCCCEEEeCcc
Confidence 5566678999999999544 4555433332 2 1 13455666 7654 5678889999999998653
No 91
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.03 E-value=23 Score=33.81 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=41.7
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.+.++++.+.|+.+||+-++.+. ...+......+..+++... ..+++|-= ++.-..+++|++|+...
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~----~~~~~~~a~~L~~l~~~~~--~~lIIND~-------vdlAl~~~aDGVHLgq~ 226 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTAD----DRQRLEEAKKLKELCHRYG--ALFIVNDR-------VDIALAVDADGVHLGQE 226 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCC----HHHHHHHHHHHHHHHHHhC--CeEEEeCh-------HHHHHHcCCCEEEeChh
Confidence 34466777899999999988753 3333333334444444332 44555521 45556789999999755
Q ss_pred C
Q 020229 269 R 269 (329)
Q Consensus 269 ~ 269 (329)
.
T Consensus 227 d 227 (347)
T PRK02615 227 D 227 (347)
T ss_pred h
Confidence 4
No 92
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=77.80 E-value=11 Score=36.49 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEee--cccChHHHHHHHHhCCCcEEE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIIDMDADVIT 264 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--C~Gn~~~i~~~l~~~~~d~~~ 264 (329)
.|.+.+++|.+.||+.|+|-|.+-. +++...-+++.++++.. + +++.||+ --|=..--+=.-.+.++|+|.
T Consensus 157 ~yv~~akel~~~g~DSIciKDmaGl--ltP~~ayelVk~iK~~~---~--~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 157 YYVELAKELLEMGVDSICIKDMAGL--LTPYEAYELVKAIKKEL---P--VPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred HHHHHHHHHHHcCCCEEEeeccccc--CChHHHHHHHHHHHHhc---C--CeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 3555677888999999999987632 34444433344444444 2 4555554 333221112222567777776
Q ss_pred EE
Q 020229 265 IE 266 (329)
Q Consensus 265 lE 266 (329)
.-
T Consensus 230 TA 231 (472)
T COG5016 230 TA 231 (472)
T ss_pred hh
Confidence 54
No 93
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.75 E-value=11 Score=34.77 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
++.+..++|+++||+|-. +++++++.++. +. + .. .+-.. |+.+ +-+..+.+++||.|++=.
T Consensus 206 ea~ea~~~gaDiI~LDn~------s~e~l~~av~~---~~-~---~~--~leaS-GGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 206 QLEEALELGVDAVLLDNM------TPDTLREAVAI---VA-G---RA--ITEAS-GRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHcCCCEEEeCCC------CHHHHHHHHHH---hC-C---Cc--eEEEE-CCCCHHHHHHHHhcCCCEEEeCh
Confidence 445566899999999944 45666433332 21 1 12 24555 7664 567888899999999864
No 94
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=77.55 E-value=15 Score=36.10 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=42.2
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
.++.+.++|+++||+-+..+. ..++......+..+.+.. ++++.++-- ++.-.++++|++|+-...
T Consensus 222 ~ve~aL~aGv~~VQLReK~ls----~~el~~la~~l~~l~~~~--gv~LiIND~-------~dlAl~~gAdGVHLGQeD 287 (437)
T PRK12290 222 WIERLLPLGINTVQLRIKDPQ----QADLEQQIIRAIALGREY--NAQVFINDY-------WQLAIKHQAYGVHLGQED 287 (437)
T ss_pred HHHHHHhCCCCEEEEeCCCCC----HHHHHHHHHHHHHHHHHh--CCEEEEECH-------HHHHHHcCCCEEEcChHH
Confidence 477888999999999988854 344433333333444333 245566533 566677888999887543
No 95
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=77.39 E-value=61 Score=30.02 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=72.0
Q ss_pred HHHHHHHHCCCCeEEecCCccCC---CCC-hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVM---DLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
+.++.+.+.|+++|-|--.+-.. .++ .++++++.++++.+.+.. +.++.+-++. ..++..-++.++|.+.=
T Consensus 42 ~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~--~~~ISIDT~~---~~va~~AL~~GadiIND 116 (282)
T PRK11613 42 KHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF--EVWISVDTSK---PEVIRESAKAGAHIIND 116 (282)
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCeEEEECCC---HHHHHHHHHcCCCEEEE
Confidence 33667789999999998433111 233 356677788887776544 3677888873 35677778889987731
Q ss_pred EcCCCchhHHHHhhhcccCCCeeeeeeec--CCCC----CCCC-H----HHHHHHHHHHHHh-cCCCceEeCCCCC
Q 020229 266 ENSRSDEKLLSVFREGVKYGAGIGPGVYD--IHSP----RIPS-T----EEIADRINKMLAV-LETNILWVNPDLH 329 (329)
Q Consensus 266 E~~~~~~~~l~~l~~~~~~~~~i~~Gvvd--~~~~----~~e~-~----e~i~~ri~~a~~~-v~~~~l~ispdCG 329 (329)
=..-...+.++.+++ .+..+++-=.. +++. ..++ . +.+.++++.+.+. ++++++++.|.=|
T Consensus 117 I~g~~d~~~~~~~a~---~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiG 189 (282)
T PRK11613 117 IRSLSEPGALEAAAE---TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFG 189 (282)
T ss_pred CCCCCCHHHHHHHHH---cCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCC
Confidence 111112345566654 23333332110 1111 1112 2 2334555544332 2357999998643
No 96
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=77.24 E-value=56 Score=29.57 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=34.4
Q ss_pred HHHHHHHhCC-CcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCC-CCCCCHHHHHHHHHHHHHhcCC
Q 020229 250 DIIHSIIDMD-ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLET 319 (329)
Q Consensus 250 ~i~~~l~~~~-~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~-~~~e~~e~i~~ri~~a~~~v~~ 319 (329)
.++..+.+++ +|.+.+|........-+.+......+..++ + |-++ ....+.+++.+.++++. ..|.
T Consensus 99 ~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI-~--S~H~f~~tP~~~~l~~~~~~~~-~~ga 166 (253)
T PRK02412 99 ALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVV-L--SYHDFEKTPPKEEIVERLRKME-SLGA 166 (253)
T ss_pred HHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEE-E--eeCCCCCCcCHHHHHHHHHHHH-HhCC
Confidence 4667777888 899999987643322222221001122222 2 3232 23444478887777764 3343
No 97
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=75.13 E-value=52 Score=31.04 Aligned_cols=76 Identities=7% Similarity=-0.028 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHH
Q 020229 179 SLLPKILPIYKEVISELK-AAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHS 254 (329)
Q Consensus 179 ~l~~~la~~~~~~i~~l~-~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~ 254 (329)
+.+.+++.--.+..+... ++|+++|.|---+-..+......+.+..+.+.+.+.. +.++.+-.| ||.+ .+++.
T Consensus 68 ~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eav--d~PL~Id~s-~n~~kD~evlea 144 (319)
T PRK04452 68 EPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV--DVPLIIGGS-GNPEKDAEVLEK 144 (319)
T ss_pred HHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhC--CCCEEEecC-CCCCCCHHHHHH
Confidence 334444222355555565 8999998887211111111223344555666666555 377778888 8532 34444
Q ss_pred HHh
Q 020229 255 IID 257 (329)
Q Consensus 255 l~~ 257 (329)
-++
T Consensus 145 ale 147 (319)
T PRK04452 145 VAE 147 (319)
T ss_pred HHH
Confidence 444
No 98
>PRK13753 dihydropteroate synthase; Provisional
Probab=73.96 E-value=75 Score=29.39 Aligned_cols=84 Identities=6% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHHHHHCCCCeEEecCCccCC---CCC-hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVM---DLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
+.++.+.+.|+++|-|=-.+-.. .++ .++++.+.++++.+.+. ..++.+-++. ..++..-++.++|.+ .
T Consensus 29 ~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~---~~~ISIDT~~---~~va~~al~aGadiI-N 101 (279)
T PRK13753 29 TAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ---MHRVSIDSFQ---PETQRYALKRGVGYL-N 101 (279)
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC---CCcEEEECCC---HHHHHHHHHcCCCEE-E
Confidence 33566789999999887544221 233 35667777888777642 2567888873 356777788899854 3
Q ss_pred EcCC-CchhHHHHhhh
Q 020229 266 ENSR-SDEKLLSVFRE 280 (329)
Q Consensus 266 E~~~-~~~~~l~~l~~ 280 (329)
+... ...+..+.+.+
T Consensus 102 DVsg~~d~~~~~vva~ 117 (279)
T PRK13753 102 DIQGFPDPALYPDIAE 117 (279)
T ss_pred eCCCCCchHHHHHHHH
Confidence 4332 24455555653
No 99
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=73.93 E-value=30 Score=34.70 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+.++.+.+.|+++||+.++.+. ...+......+..+.... +.++.+|-- ++.-.++++|++|+....
T Consensus 311 ~~l~~~l~~Gv~~vqlR~k~~~----~~~~~~~a~~l~~~~~~~--~~~liind~-------~~lA~~~~adGvHl~~~d 377 (502)
T PLN02898 311 DAVRAAIEGGATIVQLREKEAE----TREFIEEAKACLAICRSY--GVPLLINDR-------VDVALACDADGVHLGQSD 377 (502)
T ss_pred HHHHHHHHcCCCEEEEccCCCC----HHHHHHHHHHHHHHHHHh--CCEEEEcCh-------HHHHHhcCCCEEEeChHh
Confidence 4566788999999999988743 344433333333333332 245556532 455567788899886543
No 100
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=73.56 E-value=84 Score=29.79 Aligned_cols=129 Identities=12% Similarity=0.215 Sum_probs=69.7
Q ss_pred HHHHHHHHHHCCCCeEEecC------CccCCCCC-hHHHHHHHHHHHHHHcCCCCCceeEEeecc--cChHHHHHHHHhC
Q 020229 188 YKEVISELKAAGASWIQFDE------PLLVMDLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCY--SNFNDIIHSIIDM 258 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDE------P~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~--Gn~~~i~~~l~~~ 258 (329)
..+.+++|.++|+++|.+== -++....+ ..+.+.+ +.+.+.++ ..++.+.+-. |+..+ ++...++
T Consensus 26 ~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i----~~~~~~~~-~~~~~~ll~pg~~~~~d-l~~a~~~ 99 (333)
T TIGR03217 26 VRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYI----EAAADVVK-RAKVAVLLLPGIGTVHD-LKAAYDA 99 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHH----HHHHHhCC-CCEEEEEeccCccCHHH-HHHHHHC
Confidence 34456678899999999941 12222111 0111212 22222233 2455444433 34433 4666778
Q ss_pred CCcEEEEEcCCCc-h---hHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 259 DADVITIENSRSD-E---KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 259 ~~d~~~lE~~~~~-~---~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
++|.+.+=..... . +..+..++ .|..+...+.++. .-++|.+.+.++++.+ .|++.+++.-..|
T Consensus 100 gvd~iri~~~~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G 167 (333)
T TIGR03217 100 GARTVRVATHCTEADVSEQHIGMARE---LGMDTVGFLMMSH---MTPPEKLAEQAKLMES-YGADCVYIVDSAG 167 (333)
T ss_pred CCCEEEEEeccchHHHHHHHHHHHHH---cCCeEEEEEEccc---CCCHHHHHHHHHHHHh-cCCCEEEEccCCC
Confidence 8888887654322 2 23333332 3556666666553 3578888888877654 5778888765544
No 101
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.42 E-value=38 Score=32.26 Aligned_cols=90 Identities=8% Similarity=0.083 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc-------cCC--CC-------ChHH-HHHHHHHHHHHHcCCC----
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEPL-------LVM--DL-------DSHK-LHAFIHSFRITNCGVQ---- 234 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~-------l~~--~~-------~~~~-~~~~~~~~~~~~~~~~---- 234 (329)
+.++ ++.+.+.|.+..+.+.++|++.|+|.--- |+. +- +.+. .+...+.+..+.+.++
T Consensus 135 t~~e-I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 135 THEE-IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence 4444 46788888888888999999999998421 111 00 1111 1233455555555553
Q ss_pred CCceeEEeecccCh----------HHHHHHHHhCCCcEEEEE
Q 020229 235 DTTQIHTHMCYSNF----------NDIIHSIIDMDADVITIE 266 (329)
Q Consensus 235 ~~~~i~lH~C~Gn~----------~~i~~~l~~~~~d~~~lE 266 (329)
.+.++++.+...++ ..++..|.+.++|.+++-
T Consensus 214 ~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred CCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 46788888874221 256788888999999985
No 102
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.55 E-value=34 Score=31.63 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHCCCCeEEecCCcc-CCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHH---HHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDI---IHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i---~~~l~~~~~d~ 262 (329)
.+++.++.+.+.|++-|.+---+- ...++.++...+.+. +.+..+++.+++.|+|. ++.+. .....++++|+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~---~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRA---AVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHH---HHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCE
Confidence 456667778889999777653221 112455555444333 22323334788899984 77643 44456789999
Q ss_pred EEEEcC---C-CchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHH
Q 020229 263 ITIENS---R-SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRI 310 (329)
Q Consensus 263 ~~lE~~---~-~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri 310 (329)
+.+=-. . +.....+.+..... ...+-+-+.+. +...=++|.+++..
T Consensus 98 v~~~pP~y~~~~~~~i~~~f~~v~~-~~~~pi~lYn~-~g~~l~~~~l~~L~ 147 (289)
T cd00951 98 ILLLPPYLTEAPQEGLYAHVEAVCK-STDLGVIVYNR-ANAVLTADSLARLA 147 (289)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHh-cCCCCEEEEeC-CCCCCCHHHHHHHH
Confidence 887522 2 22345555543111 11233444442 22223466665444
No 103
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=71.85 E-value=12 Score=37.86 Aligned_cols=53 Identities=17% Similarity=0.438 Sum_probs=35.6
Q ss_pred CCCeEEecCCccCCCCChHHH-HHHHHHHHHHHcCCCCCceeEEeec----ccChHHHHHHH
Q 020229 199 GASWIQFDEPLLVMDLDSHKL-HAFIHSFRITNCGVQDTTQIHTHMC----YSNFNDIIHSI 255 (329)
Q Consensus 199 G~~~IQiDEP~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C----~Gn~~~i~~~l 255 (329)
|.+...+|||.-.+++++.++ ..+.++.+++ ++| ..+++|+| .||++..++.|
T Consensus 190 ~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~l--g~p--h~iH~h~nnlg~pgn~~~t~~t~ 247 (541)
T cd01304 190 GQNVLSLDDPVPYFDITPREILKGLAEANEEL--GLP--HSIHVHCNNLGVPGNYETTLETM 247 (541)
T ss_pred CCccccccCCCCCCCCCHHHHHHHHHHHHHhc--CCc--eEEEEccccCCCCCcHHHHHHHH
Confidence 334458999998888888765 5455553333 454 78888877 57887666655
No 104
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=71.31 E-value=13 Score=37.66 Aligned_cols=54 Identities=15% Similarity=0.382 Sum_probs=37.0
Q ss_pred CCCeEEecCCccCCCCChHHH-HHHHHHHHHHHcCCCCCceeEEeec----ccChHHHHHHHH
Q 020229 199 GASWIQFDEPLLVMDLDSHKL-HAFIHSFRITNCGVQDTTQIHTHMC----YSNFNDIIHSII 256 (329)
Q Consensus 199 G~~~IQiDEP~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C----~Gn~~~i~~~l~ 256 (329)
|.+...+|||.-.+++++.++ +.+.++.+.+ ++| ..++||+| .||++..++.|.
T Consensus 194 ~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l--~lp--h~~h~H~nnlg~pgn~~~t~~t~~ 252 (556)
T TIGR03121 194 GENVLSLDDPVPYFGITPREIIKGLARANEEL--GLP--HSIHVHCNNLGVPGNYETTLDTLD 252 (556)
T ss_pred CCccccccCCCCCCCCCHHHHHHHHHHHHHhc--CCC--ceEEEecCCCCCCCchHHHHHHHH
Confidence 334458999998888888766 5455553332 555 78899999 588876666663
No 105
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=71.24 E-value=72 Score=28.00 Aligned_cols=91 Identities=8% Similarity=0.106 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCC-CcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCC
Q 020229 222 FIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD-ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRI 300 (329)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~-~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~ 300 (329)
|...+..+.+ . +.++.+|+. +++..+++.+.+.+ ...+-+-......+.++.+.+ .|-.+.+|.+-. .
T Consensus 110 ~~~~~~~a~e-~--~~pv~iH~~-~~~~~~~~l~~~~~~~~~~i~H~~~~~~~~~~~~~~---~g~~~~~~~~~~----~ 178 (251)
T cd01310 110 FRAQLELAKE-L--NLPVVIHSR-DAHEDVLEILKEYGPPKRGVFHCFSGSAEEAKELLD---LGFYISISGIVT----F 178 (251)
T ss_pred HHHHHHHHHH-h--CCCeEEEee-CchHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHH---cCCEEEeeeeec----c
Confidence 4444444443 2 367899955 66777888887776 444444444333333333332 255555554321 1
Q ss_pred CCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 301 PSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 301 e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
.+.+ .++++++.++++|+.+++|
T Consensus 179 ~~~~----~~~~~~~~~~~dril~~TD 201 (251)
T cd01310 179 KNAN----ELREVVKEIPLERLLLETD 201 (251)
T ss_pred CCCH----HHHHHHHhCChHHEEEccc
Confidence 2222 4556677889999999988
No 106
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=70.85 E-value=73 Score=27.91 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=69.5
Q ss_pred HHHHHHCCCCeEEecCCccCC---CCC-hHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEc
Q 020229 192 ISELKAAGASWIQFDEPLLVM---DLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~ 267 (329)
++.+.++|+++|-|---+-.. ..+ .++++++.+++..+.+... +.++.+-++. + .++..-++.+++.+. +.
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~-~~plSIDT~~--~-~v~~~aL~~g~~~in-d~ 99 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENP-DVPLSIDTFN--P-EVAEAALKAGADIIN-DI 99 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHT-TSEEEEEESS--H-HHHHHHHHHTSSEEE-ET
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCC-CeEEEEECCC--H-HHHHHHHHcCcceEE-ec
Confidence 778889999999997322111 122 3456777888777775121 3677788773 3 456666666888543 43
Q ss_pred CC-C-chhHHHHhhhcccCCCeeeeeeecC-CCCCCCCHH---HHHHHHHHHHHh---------cCCCceEeCCCC
Q 020229 268 SR-S-DEKLLSVFREGVKYGAGIGPGVYDI-HSPRIPSTE---EIADRINKMLAV---------LETNILWVNPDL 328 (329)
Q Consensus 268 ~~-~-~~~~l~~l~~~~~~~~~i~~Gvvd~-~~~~~e~~e---~i~~ri~~a~~~---------v~~~~l~ispdC 328 (329)
.. . ..+.++.++++ +..+++=-.+. ....-++++ ++.+++.+.++. |+.+++++.|.=
T Consensus 100 ~~~~~~~~~~~l~a~~---~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgi 172 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAEY---GAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGI 172 (210)
T ss_dssp TTTSSSTTHHHHHHHH---TSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTT
T ss_pred ccccccchhhhhhhcC---CCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeecccc
Confidence 33 2 55677777752 43333222221 111222332 333333333333 456999998853
No 107
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=70.79 E-value=36 Score=31.68 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHCCCCeEEecCCcc-CCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHH---HHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDI---IHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i---~~~l~~~~~d~ 262 (329)
++++.++.+.+.|++-|.+---+- ...++.++...+.+.. .+...++.+++.|++ +++... .....++++|+
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~---~~~~~~~~pvi~gv~-~~t~~~i~~~~~a~~~Gada 104 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAA---VETTAGRVPVIAGAG-GGTAQAIEYAQAAERAGADG 104 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHH---HHHhCCCCcEEEecC-CCHHHHHHHHHHHHHhCCCE
Confidence 466667788889999887764321 1134556554444332 232333467888998 577644 44446789999
Q ss_pred EEEE
Q 020229 263 ITIE 266 (329)
Q Consensus 263 ~~lE 266 (329)
+.+=
T Consensus 105 v~~~ 108 (303)
T PRK03620 105 ILLL 108 (303)
T ss_pred EEEC
Confidence 8774
No 108
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=70.54 E-value=33 Score=34.41 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEee--cccChHHHHHHH--HhCCCcEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSI--IDMDADVI 263 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--C~Gn~~~i~~~l--~~~~~d~~ 263 (329)
|.+.++.+.++||+.|.|-|.+-. +.+.....++.++.. .++++.++++|+ =+|... ...| .+.++|.+
T Consensus 157 ~~~~a~~l~~~Gad~I~IkDtaGl--l~P~~~~~LV~~Lk~---~~~~~ipI~~H~Hnt~GlA~--An~laAieAGad~v 229 (499)
T PRK12330 157 FVEQAKRLLDMGADSICIKDMAAL--LKPQPAYDIVKGIKE---ACGEDTRINLHCHSTTGVTL--VSLMKAIEAGVDVV 229 (499)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccC--CCHHHHHHHHHHHHH---hCCCCCeEEEEeCCCCCcHH--HHHHHHHHcCCCEE
Confidence 444456678899999999988743 345555444444443 332234555554 345432 3333 45666665
Q ss_pred EEE
Q 020229 264 TIE 266 (329)
Q Consensus 264 ~lE 266 (329)
..=
T Consensus 230 Dta 232 (499)
T PRK12330 230 DTA 232 (499)
T ss_pred Eee
Confidence 544
No 109
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=70.46 E-value=94 Score=29.05 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=68.8
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh---HHHHHHHHhCCCcEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF---NDIIHSIIDMDADVIT 264 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~---~~i~~~l~~~~~d~~~ 264 (329)
..++++++.+.|++.|.|---... ++.+...+.+.+.++.+.+..+ +. .+++|-.++ .+.++.+.+.+.|.+.
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~d-dl~d~g~~~l~~li~~I~~~~p-~i--~Ievl~~d~~g~~e~l~~l~~aG~dv~~ 171 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRD-DLEDGGASHLAECIEAIREKLP-NI--KIETLVPDFRGNIAALDILLDAPPDVYN 171 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCC-CcccccHHHHHHHHHHHHhcCC-CC--EEEEeCCcccCCHHHHHHHHHcCchhhc
Confidence 456677788899996655411100 1211223345666666665444 23 455554333 4678889998888665
Q ss_pred E--EcC-------CC---chhHHHHh---hhc---ccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 265 I--ENS-------RS---DEKLLSVF---REG---VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 265 l--E~~-------~~---~~~~l~~l---~~~---~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
. |.+ +. ..+-++.+ ++. +.....+++|+ -||.|++.+.++.. +.++.+.+.+.
T Consensus 172 hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-------GETeee~~etl~~L-relg~d~v~ig 242 (302)
T TIGR00510 172 HNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL-------GETNEEIKQTLKDL-RDHGVTMVTLG 242 (302)
T ss_pred ccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC-------CCCHHHHHHHHHHH-HhcCCCEEEee
Confidence 4 422 11 12323333 321 11123344444 49999998777665 55677776654
No 110
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=70.08 E-value=36 Score=33.75 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITIE 266 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~lE 266 (329)
.+.++.+.++||+.|.|-|.+-. +.+.....++.++.... +++ ..+|.|.=+|-.. ...+ .+.++|.++.=
T Consensus 157 ~~~a~~l~~~Gad~I~i~Dt~G~--l~P~~v~~lv~alk~~~-~~p--i~~H~Hnt~GlA~--AN~laAieaGad~vD~s 229 (448)
T PRK12331 157 VKLAKEMQEMGADSICIKDMAGI--LTPYVAYELVKRIKEAV-TVP--LEVHTHATSGIAE--MTYLKAIEAGADIIDTA 229 (448)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC--CCHHHHHHHHHHHHHhc-CCe--EEEEecCCCCcHH--HHHHHHHHcCCCEEEee
Confidence 34455677899999999988744 34555544555554433 232 4455555556442 3333 46677766554
Q ss_pred c
Q 020229 267 N 267 (329)
Q Consensus 267 ~ 267 (329)
.
T Consensus 230 v 230 (448)
T PRK12331 230 I 230 (448)
T ss_pred c
Confidence 3
No 111
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=69.12 E-value=94 Score=28.54 Aligned_cols=119 Identities=12% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHCCCCeEEecCCcc-CCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
++++.++.+.+.|++-|.+--.+- ...++.++...+.+..... .+++.++.+|++-.++.+ .+....++++|+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~ 99 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEA---VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADG 99 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHH---hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCE
Confidence 566667888889999887753221 1134566654444433333 333467889999556654 444556789999
Q ss_pred EEEEcC---C-CchhHHHHhhhccc-CCCeeeeeeecCCCCCCCCHHHHHH
Q 020229 263 ITIENS---R-SDEKLLSVFREGVK-YGAGIGPGVYDIHSPRIPSTEEIAD 308 (329)
Q Consensus 263 ~~lE~~---~-~~~~~l~~l~~~~~-~~~~i~~Gvvd~~~~~~e~~e~i~~ 308 (329)
+.+=.. . +..+..+.+..... .+..+++=.++..+...=+++.+++
T Consensus 100 v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~ 150 (292)
T PRK03170 100 ALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVAR 150 (292)
T ss_pred EEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHH
Confidence 988533 2 23455555543111 1344555555544443444555543
No 112
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=69.00 E-value=39 Score=33.64 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
|.+.++++.++||+.|.|=|.+-. +.+.....++.++.... +++ ..+|.|.=+|-.. ...+ .+.++|.++.
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~--l~P~~v~~Lv~~lk~~~-~vp--I~~H~Hnt~GlA~--AN~laAieaGad~vD~ 227 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGL--LTPKRAYELVKALKKKF-GVP--VEVHSHCTTGLAS--LAYLAAVEAGADMFDT 227 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCC--cCHHHHHHHHHHHHHhc-CCc--eEEEecCCCCcHH--HHHHHHHHhCCCEEEe
Confidence 444456678899999999988744 34556555555554443 232 4455555556442 3333 4667777655
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 228 sv 229 (467)
T PRK14041 228 AI 229 (467)
T ss_pred ec
Confidence 43
No 113
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=67.99 E-value=9.2 Score=36.05 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCC-CChHHHHHHHHHHHHHHcCCCCCceeEEeec-----------cc
Q 020229 179 SLLPKILPIYKEVISELKAAGASWIQFDEPLLVMD-LDSHKLHAFIHSFRITNCGVQDTTQIHTHMC-----------YS 246 (329)
Q Consensus 179 ~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C-----------~G 246 (329)
.-++++..+|.+++....++|.++|-+---.|+.- -++++ +.++|+++++... .+|+||=- ||
T Consensus 125 ~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p~D---Y~~VY~~lL~q~~--~PVILHWLG~mFDPaL~GYWG 199 (382)
T PF06187_consen 125 ASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVARSPDD---YLRVYDRLLSQAD--EPVILHWLGDMFDPALAGYWG 199 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH--SHHH---HHHHHHHHHHH-S--S-EEEEEE-TTT-GGGTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhCCHHH---HHHHHHHHHHHcC--CCEEEEecccccCcccccccC
Confidence 35789999999999999999999988764444321 13333 4778888888775 57899965 44
Q ss_pred ChH------HHHHHHHh--CCCcEEEEEc
Q 020229 247 NFN------DIIHSIID--MDADVITIEN 267 (329)
Q Consensus 247 n~~------~i~~~l~~--~~~d~~~lE~ 267 (329)
+.+ -.++.|.+ -+||++-+-.
T Consensus 200 s~d~~~A~~t~l~lI~~~~~kVdGIKiSL 228 (382)
T PF06187_consen 200 SADLDAAMDTVLELIAAHADKVDGIKISL 228 (382)
T ss_dssp -SSHHHHHHHHHHHHHHTGGGEEEEEEES
T ss_pred CCcHHHHHHHHHHHHHhChhhcCeeEecc
Confidence 321 24555543 4778877653
No 114
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.88 E-value=65 Score=28.57 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=40.2
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHH--HHHHHhCCCcEEEEEcC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDI--IHSIIDMDADVITIENS 268 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i--~~~l~~~~~d~~~lE~~ 268 (329)
.++.+.+.|++++|+-|-..+..-.... ...+..+.+..+ .++ .++ |...+. +..++++++|.+.+-..
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~~~~~~~~----~~~i~~i~~~~~--~~l--~v~-GGi~~~~~~~~~~~~Ga~~v~iGs~ 107 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGAFEGERKN----AEAIEKIIEAVG--VPV--QLG-GGIRSAEDAASLLDLGVDRVILGTA 107 (241)
T ss_pred HHHHHHHcCCCEEEEEechhhhcCCccc----HHHHHHHHHHcC--CcE--EEc-CCcCCHHHHHHHHHcCCCEEEEChH
Confidence 3445667899999998766443211111 222333444332 343 345 555433 67788899999988765
No 115
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.71 E-value=46 Score=28.66 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=51.7
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 270 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~ 270 (329)
.++++.+.|+++||+-+-... ..++ . ..+.+..+ ...++-.+..= .+-++.-.++++|+++.-....
T Consensus 29 ~~~~~~~~Gv~~vqlr~k~~~----~~e~---~---~~~~~~~~-~~~~g~gtvl~--~d~~~~A~~~gAdgv~~p~~~~ 95 (187)
T PRK07455 29 MAEAVAAGGMRLIEITWNSDQ----PAEL---I---SQLREKLP-ECIIGTGTILT--LEDLEEAIAAGAQFCFTPHVDP 95 (187)
T ss_pred HHHHHHHCCCCEEEEeCCCCC----HHHH---H---HHHHHhCC-CcEEeEEEEEc--HHHHHHHHHcCCCEEECCCCCH
Confidence 355677899999999865532 1111 1 11221111 12233333322 2567777889999997665442
Q ss_pred chhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 271 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 271 ~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
..-...... +...++| .-|++++.+..+.-.+|+
T Consensus 96 ~~~~~~~~~-----~~~~i~G--------~~t~~e~~~A~~~Gadyv 129 (187)
T PRK07455 96 ELIEAAVAQ-----DIPIIPG--------ALTPTEIVTAWQAGASCV 129 (187)
T ss_pred HHHHHHHHc-----CCCEEcC--------cCCHHHHHHHHHCCCCEE
Confidence 211111111 2334566 356667666555444444
No 116
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=67.55 E-value=1.1e+02 Score=28.55 Aligned_cols=121 Identities=15% Similarity=0.059 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHCCCCeEEecCCcc-CCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccC-hH---HHHHHHHhCCCc
Q 020229 187 IYKEVISELKAAGASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSN-FN---DIIHSIIDMDAD 261 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn-~~---~i~~~l~~~~~d 261 (329)
++++.++.+.+.|++-|.+--.+- ...++.++..++.+....+..+ ..+++.+++ +| +. .......++++|
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g---rvpviaG~g-~~~t~eai~lak~a~~~Gad 101 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG---RVPVIAGVG-SNSTAEAIELAKHAEKLGAD 101 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC---CCcEEEecC-CCcHHHHHHHHHHHHhcCCC
Confidence 567778889999999777763331 1124555554444444444333 367899999 65 44 355556789999
Q ss_pred EEEEEcC---CC-chhHHHHhhhcc-cCCCeeeeeeecCCCCCCCCHHHHHHHHH
Q 020229 262 VITIENS---RS-DEKLLSVFREGV-KYGAGIGPGVYDIHSPRIPSTEEIADRIN 311 (329)
Q Consensus 262 ~~~lE~~---~~-~~~~l~~l~~~~-~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~ 311 (329)
++.+=-. .. .....+.++... ..+-.+++=+++.++...-++|.+++..+
T Consensus 102 ~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 102 GILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred EEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9987632 22 233444443210 11334666677778877788888766554
No 117
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=67.31 E-value=48 Score=30.18 Aligned_cols=120 Identities=12% Similarity=0.021 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHCCCCeEEecCCcc-CCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
++++.++.+.+.|++-|.+--.+- ...++.++...+.+...... +++.++.+|++..+..+ ......++++|+
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~ 95 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAGVGANSTREAIELARHAEEAGADG 95 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEecCCccHHHHHHHHHHHHHcCCCE
Confidence 566677888889999877654331 11345555544444333332 23478889998555543 444557789999
Q ss_pred EEEEcCC----CchhHHHHhhhccc-CCCeeeeeeecCCCCCCCCHHHHHHH
Q 020229 263 ITIENSR----SDEKLLSVFREGVK-YGAGIGPGVYDIHSPRIPSTEEIADR 309 (329)
Q Consensus 263 ~~lE~~~----~~~~~l~~l~~~~~-~~~~i~~Gvvd~~~~~~e~~e~i~~r 309 (329)
+.+=... +..+..+.+..... .+..+++=.++..+...=+++.+++.
T Consensus 96 v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L 147 (281)
T cd00408 96 VLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARL 147 (281)
T ss_pred EEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHH
Confidence 9886331 23455555543111 12233333333333344456655443
No 118
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.23 E-value=44 Score=31.21 Aligned_cols=90 Identities=10% Similarity=0.163 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCC--ccCC-CCCh-------------H-HHHHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEP--LLVM-DLDS-------------H-KLHAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP--~l~~-~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ ++.+.+.+.+.++.+.++|++.|+|.-- .|-. .+++ + ..+...+.++.+.+.+..+.+
T Consensus 132 t~~e-i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~ 210 (327)
T cd02803 132 TKEE-IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFP 210 (327)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCce
Confidence 4444 4678888888888899999999999842 1110 1111 1 113345666666666654566
Q ss_pred eEEeecccC----------hHHHHHHHHhCCCcEEEEE
Q 020229 239 IHTHMCYSN----------FNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 239 i~lH~C~Gn----------~~~i~~~l~~~~~d~~~lE 266 (329)
+++-+..++ ...++..+.+.++|.+++-
T Consensus 211 i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 211 VGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred EEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 776555221 1246777888899999763
No 119
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=66.18 E-value=44 Score=32.60 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEc
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~ 267 (329)
..+.+++|.++|+++|.||--. -....+ .+.+..+.+..| +..+++..| .+.+ -...+.++++|++.+=+
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~----g~~~~~---~~~v~~ik~~~p-~~~vi~g~V-~T~e-~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAH----GHSTRI---IELVKKIKTKYP-NLDLIAGNI-VTKE-AALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCC----CCChhH---HHHHHHHHhhCC-CCcEEEEec-CCHH-HHHHHHHcCCCEEEECC
Confidence 4577889999999999998322 111222 334455555555 356666667 5454 46667789999987643
No 120
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=66.14 E-value=50 Score=30.54 Aligned_cols=76 Identities=17% Similarity=0.085 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHCCCCeEEecCCcc-CCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
.+++.++.+.+.|++-|.+---+- ...++.++...+.+..-+. .+++.+++.|+. +++.+ ......++++|+
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~---~~g~~pvi~gv~-~~t~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST---AKGKVPVYTGVG-GNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH---hCCCCcEEEecC-ccHHHHHHHHHHHHHhCCCE
Confidence 466677788899999887653221 1134556664444433333 333477888988 56654 444456789999
Q ss_pred EEEE
Q 020229 263 ITIE 266 (329)
Q Consensus 263 ~~lE 266 (329)
+.+=
T Consensus 103 v~~~ 106 (296)
T TIGR03249 103 YLLL 106 (296)
T ss_pred EEEC
Confidence 8774
No 121
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=65.79 E-value=41 Score=34.58 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
|.+.++++.++||+.|.|=|.+-. +.+.....++.++.... +++ ..+|.|.=.|... ...+ .+.++|.+..
T Consensus 156 ~~~~ak~l~~~Gad~I~IkDtaG~--l~P~~v~~lv~alk~~~-~ip--i~~H~Hnt~Gla~--an~laAieaGad~iD~ 228 (596)
T PRK14042 156 FLELGKKLAEMGCDSIAIKDMAGL--LTPTVTVELYAGLKQAT-GLP--VHLHSHSTSGLAS--ICHYEAVLAGCNHIDT 228 (596)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccC--CCHHHHHHHHHHHHhhc-CCE--EEEEeCCCCCcHH--HHHHHHHHhCCCEEEe
Confidence 334456677899999999988743 34555544555554433 232 4444454455432 3333 4667777665
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 229 ai 230 (596)
T PRK14042 229 AI 230 (596)
T ss_pred cc
Confidence 54
No 122
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=65.45 E-value=30 Score=32.41 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=41.4
Q ss_pred HHHHHHHH------CCCCeEEecCCccCCC---CChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCC
Q 020229 190 EVISELKA------AGASWIQFDEPLLVMD---LDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMD 259 (329)
Q Consensus 190 ~~i~~l~~------aG~~~IQiDEP~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~ 259 (329)
+++++..+ +|+++||+|-.-+... .+++.+ .+++..+.. .+.+-.. |+.+ +-+.....++
T Consensus 214 eea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l---~~av~~~~~------~~~lEaS-GGIt~~ni~~yA~tG 283 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML---KEAVELING------RFETEAS-GNVTLDTVHKIGQTG 283 (308)
T ss_pred HHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH---HHHHHhhCC------CceEEEE-CCCCHHHHHHHHHcC
Confidence 35566667 9999999996633221 134444 333332221 1224555 6654 5677788999
Q ss_pred CcEEEEEc
Q 020229 260 ADVITIEN 267 (329)
Q Consensus 260 ~d~~~lE~ 267 (329)
||.||+=+
T Consensus 284 VD~Is~Ga 291 (308)
T PLN02716 284 VTYISSGA 291 (308)
T ss_pred CCEEEeCc
Confidence 99999864
No 123
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.50 E-value=1.1e+02 Score=27.62 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=72.2
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.+.++.|.++|++.|.+-=|.+. +.+.+ .++.+.+..+ +.++..+ |+.|... ++...+++++.+.+-.+
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~----~~~~e----~~~~l~~~~~-~~~~~~~-~r~~~~~-v~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMG----EEERE----AIRAIVALGL-PARLIVW-CRAVKED-IEAALRCGVTAVHISIP 91 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCC----HHHHH----HHHHHHhcCC-CCEEEEe-ccCCHHH-HHHHHhCCcCEEEEEEe
Confidence 44466788999999999755532 22222 2233333222 2444333 4455554 46667889998888764
Q ss_pred CCch-----------hHHHHh----hhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 269 RSDE-----------KLLSVF----REGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 269 ~~~~-----------~~l~~l----~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
.+.. +.++.+ ..-...|..+.+|..+... -+++.+.+.++++.+ .|.+.+++.-..|
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~~~i~l~DT~G 163 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR---ADPDFLIEFAEVAQE-AGADRLRFADTVG 163 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC---CCHHHHHHHHHHHHH-CCCCEEEeCCCCC
Confidence 3321 222111 1111235677777776543 468888888887765 5778888765443
No 124
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=64.50 E-value=81 Score=27.16 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=32.3
Q ss_pred eeEEeecccChHHHHHHHHhCCCcEEEEEcCCCc---hhHHHHhhhcccCCCeeeeeeecC
Q 020229 238 QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSD---EKLLSVFREGVKYGAGIGPGVYDI 295 (329)
Q Consensus 238 ~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~---~~~l~~l~~~~~~~~~i~~Gvvd~ 295 (329)
...+|+. +.-.-.++.+.+.++|.+.+-+.... .+..+..++ .|..+++++.++
T Consensus 56 ~~d~k~~-d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~---~g~~~~~~~~~~ 112 (206)
T TIGR03128 56 LADLKTM-DAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKK---HGKEVQVDLINV 112 (206)
T ss_pred EEEEeec-cchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH---cCCEEEEEecCC
Confidence 3445555 32222378888999999987765433 344444443 466777776665
No 125
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=64.44 E-value=1.1e+02 Score=27.71 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=43.7
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHH--------------HHHHHHHHHHcCCCCCceeEEeecccCh------HH
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLH--------------AFIHSFRITNCGVQDTTQIHTHMCYSNF------ND 250 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~lH~C~Gn~------~~ 250 (329)
.+++|.++||++|.|-=|.--.-.+...++ .+.+.+..+.+... +.++. |+-+-|. ++
T Consensus 29 ~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~plv-~m~Y~Npi~~~G~e~ 106 (256)
T TIGR00262 29 IIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-NIPIG-LLTYYNLIFRKGVEE 106 (256)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCEE-EEEeccHHhhhhHHH
Confidence 356788899999999877622111222221 12222333332211 35655 7777776 56
Q ss_pred HHHHHHhCCCcEEEEE
Q 020229 251 IIHSIIDMDADVITIE 266 (329)
Q Consensus 251 i~~~l~~~~~d~~~lE 266 (329)
.++.+.++++|++-+-
T Consensus 107 f~~~~~~aGvdgviip 122 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVA 122 (256)
T ss_pred HHHHHHHcCCCEEEEC
Confidence 7888889999987664
No 126
>PLN02229 alpha-galactosidase
Probab=62.32 E-value=57 Score=32.10 Aligned_cols=88 Identities=9% Similarity=0.042 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCC--------ChHHH-HHHHHHHHHHHcCCCCCceeEEeecccC
Q 020229 177 LLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDL--------DSHKL-HAFIHSFRITNCGVQDTTQIHTHMCYSN 247 (329)
Q Consensus 177 ~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C~Gn 247 (329)
.++.+.+.|+++.+ ..|.++|.++|.||+-...... ++..+ .-+....+.+.+ .+.+.++|++.|.
T Consensus 78 ~E~~i~~~ad~~v~--~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~---~GlKfGIy~d~G~ 152 (427)
T PLN02229 78 NETVIKETADALVS--TGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHS---KGLKLGIYSDAGV 152 (427)
T ss_pred CHHHHHHHHHHHHH--hHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHH---CCCceEEeccCCC
Confidence 36677778877654 4578999999999997654311 11212 112222233332 2367788876553
Q ss_pred h------------HHHHHHHHhCCCcEEEEEcCC
Q 020229 248 F------------NDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 248 ~------------~~i~~~l~~~~~d~~~lE~~~ 269 (329)
. ..-+..+.+-+||.+-+|.+.
T Consensus 153 ~TC~~~pGS~g~e~~DA~~fA~WGVDylK~D~C~ 186 (427)
T PLN02229 153 FTCQVRPGSLFHEVDDADIFASWGVDYLKYDNCY 186 (427)
T ss_pred cccCCCCCCccHHHHHHHHHHHcCCCEEEecCCC
Confidence 2 245777788899999999874
No 127
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.09 E-value=1.1e+02 Score=28.83 Aligned_cols=88 Identities=8% Similarity=0.156 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc-------cCCCC---------ChHH-HHHHHHHHHHHHcCCCCCceeE
Q 020229 178 LSLLPKILPIYKEVISELKAAGASWIQFDEPL-------LVMDL---------DSHK-LHAFIHSFRITNCGVQDTTQIH 240 (329)
Q Consensus 178 ~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~-------l~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~i~ 240 (329)
.+-+..+.+.|.+.++...++|++.|+|.--- |+... +.+. .+...+.++.+.+.+.++.+++
T Consensus 141 ~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~ 220 (338)
T cd04733 141 EEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 34457788888888889999999999998321 11100 1111 1334566777777676567788
Q ss_pred Eeecc-----cCh-----HHHHHHHHhCCCcEEEE
Q 020229 241 THMCY-----SNF-----NDIIHSIIDMDADVITI 265 (329)
Q Consensus 241 lH~C~-----Gn~-----~~i~~~l~~~~~d~~~l 265 (329)
+-+.. +.+ ..+++.|.+.++|.+++
T Consensus 221 vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 221 IKLNSADFQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred EEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 77651 112 25677888889998874
No 128
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=61.76 E-value=68 Score=30.99 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecC-C--cc-CCCCCh-------------HH-HHHHHHHHHHHHcCCCCCc
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDE-P--LL-VMDLDS-------------HK-LHAFIHSFRITNCGVQDTT 237 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDE-P--~l-~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~ 237 (329)
+.++ ++.+.+.|.+..+...++|.|.|+|.- - .| .-.+|+ +. .+...+.+..+.+.++.+.
T Consensus 141 t~~e-I~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f 219 (382)
T cd02931 141 TTEE-VETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDF 219 (382)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCc
Confidence 3344 467888888888889999999999985 1 12 112221 11 2334567777777676667
Q ss_pred eeEEeecc--------------------c-ChH---HHHHHHHhCCCcEEEEE
Q 020229 238 QIHTHMCY--------------------S-NFN---DIIHSIIDMDADVITIE 266 (329)
Q Consensus 238 ~i~lH~C~--------------------G-n~~---~i~~~l~~~~~d~~~lE 266 (329)
++++.++- | ..+ .+++.|.+.++|.+++-
T Consensus 220 ~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 220 PVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred eEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 88888772 1 011 46677778899999884
No 129
>PRK06256 biotin synthase; Validated
Probab=61.74 E-value=1.4e+02 Score=27.94 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=65.3
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEE--E
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITI--E 266 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~l--E 266 (329)
++++.+.+.|+..+.+--- ........++.+.++++.+.+.. .+.++++-|-. .+.+..|.+++++.+++ |
T Consensus 98 ~~~~~~~~~g~~~~~l~~~--g~~p~~~~~~~~~e~i~~i~~~~----~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lE 171 (336)
T PRK06256 98 EAAKEAIEEGAGTFCIVAS--GRGPSGKEVDQVVEAVKAIKEET----DLEICACLGLLTEEQAERLKEAGVDRYNHNLE 171 (336)
T ss_pred HHHHHHHHCCCCEEEEEec--CCCCCchHHHHHHHHHHHHHhcC----CCcEEecCCcCCHHHHHHHHHhCCCEEecCCc
Confidence 3455567789875444311 11122233445566666665432 12344444533 36788999999998876 4
Q ss_pred cC-------CC---chhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 267 NS-------RS---DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 267 ~~-------~~---~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
.+ .. ..+.++.+......|-.+..|+|-.. .|+.+++.+.++.+ +.++++.+.++
T Consensus 172 ts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl---gEt~ed~~~~~~~l-~~l~~~~v~i~ 236 (336)
T PRK06256 172 TSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM---GESLEDRVEHAFFL-KELDADSIPIN 236 (336)
T ss_pred cCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC---CCCHHHHHHHHHHH-HhCCCCEEeec
Confidence 31 00 11222233221112333444443321 48999998877754 56777766554
No 130
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=61.65 E-value=90 Score=29.61 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
+-.+++++|.++||+++-+-=|... . .+++.++.+.++ ++++--+=|- +. ++-.-.+.++|.+-+-
T Consensus 37 aTv~QI~~L~~aG~dIVRvtv~~~e------~----A~A~~~Ik~~~~--vPLVaDiHf~-~r-la~~~~~~g~~k~RIN 102 (361)
T COG0821 37 ATVAQIKALERAGCDIVRVTVPDME------A----AEALKEIKQRLN--VPLVADIHFD-YR-LALEAAECGVDKVRIN 102 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCHH------H----HHHHHHHHHhCC--CCEEEEeecc-HH-HHHHhhhcCcceEEEC
Confidence 4455688999999999998866522 2 334455555553 5555544432 32 3333455667766665
Q ss_pred cCCCc--hhHHHHhhhcccCCCeeeeeeecCCCCC--------CCCHHHHHHHHHHH---HHhcCCCceEeC
Q 020229 267 NSRSD--EKLLSVFREGVKYGAGIGPGVYDIHSPR--------IPSTEEIADRINKM---LAVLETNILWVN 325 (329)
Q Consensus 267 ~~~~~--~~~l~~l~~~~~~~~~i~~Gvvd~~~~~--------~e~~e~i~~ri~~a---~~~v~~~~l~is 325 (329)
=.+-+ .+....+..-...|+.+-+|| +..|.+ -.++|.+..-..+- ++.++..++.+|
T Consensus 103 PGNig~~~~v~~vVe~Ak~~g~piRIGV-N~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS 173 (361)
T COG0821 103 PGNIGFKDRVREVVEAAKDKGIPIRIGV-NAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVS 173 (361)
T ss_pred CcccCcHHHHHHHHHHHHHcCCCEEEec-ccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 33322 122222322223577788887 554432 34556554443332 334456677765
No 131
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=61.46 E-value=1.1e+02 Score=26.93 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=66.5
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHHHHhCCCcEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITI 265 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~l~~~~~d~~~l 265 (329)
.+.++.|.++|++.|.+=-|.. ++.+.+.+....+.+.. .++.. .|+.+.. ..++.+.++++|.+.+
T Consensus 17 ~~i~~~L~~~Gv~~iEvg~~~~----~~~~~~~v~~~~~~~~~-----~~~~~-~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 17 LEIAKALDEAGVDYIEVGFPFA----SEDDFEQVRRLREALPN-----ARLQA-LCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp HHHHHHHHHHTTSEEEEEHCTS----SHHHHHHHHHHHHHHHS-----SEEEE-EEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHhCCCEEEEccccc----CHHHHHHhhhhhhhhcc-----cccce-eeeehHHHHHHHHHhhHhccCCEEEe
Confidence 3445678889999999884432 23444333333333322 23322 3333333 3355556789998888
Q ss_pred EcCCCc-----------hhHHHH----hhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 266 ENSRSD-----------EKLLSV----FREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 266 E~~~~~-----------~~~l~~----l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
-...+. .+.++. +..-...+..+.+|..+... -+++.+.+.++++.+. +.+.+++.
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~-g~~~i~l~ 157 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASR---TDPEELLELAEALAEA-GADIIYLA 157 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG---SSHHHHHHHHHHHHHH-T-SEEEEE
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccc---ccHHHHHHHHHHHHHc-CCeEEEee
Confidence 776443 111222 21111246677777776533 3567777777766555 67777664
No 132
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=61.20 E-value=98 Score=30.28 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=58.5
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~~lE 266 (329)
..++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.....-..+++ |+... ..+.+.+.+.+++.++
T Consensus 165 ~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~ 243 (406)
T cd08207 165 VRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNIT-DDIDEMRRNHDLVVEAGGTCVMVS 243 (406)
T ss_pred HHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCHHHHHHHHHHHHHhCCCeEEEe
Confidence 4457778999999999864433333 3346677888877654322233345555 76654 4556678999999999
Q ss_pred cCCCchhHHHHhhh
Q 020229 267 NSRSDEKLLSVFRE 280 (329)
Q Consensus 267 ~~~~~~~~l~~l~~ 280 (329)
+...+...++.+.+
T Consensus 244 ~~~~G~~~l~~l~~ 257 (406)
T cd08207 244 LNSVGLSGLAALRR 257 (406)
T ss_pred ccccchHHHHHHHh
Confidence 88777666666664
No 133
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.93 E-value=49 Score=30.52 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=37.9
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEcC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENS 268 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~~ 268 (329)
++++..++|+++||+|- ++++.+++.++. + ++..+ +-.. |+.+ +-++.+.++++|+|++=+-
T Consensus 201 ea~eA~~~gaD~I~LD~------~~~e~l~~~v~~---~----~~~i~--leAs-GGIt~~ni~~~a~tGvD~Isvg~l 263 (277)
T PRK05742 201 ELRQALAAGADIVMLDE------LSLDDMREAVRL---T----AGRAK--LEAS-GGINESTLRVIAETGVDYISIGAM 263 (277)
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHHHHH---h----CCCCc--EEEE-CCCCHHHHHHHHHcCCCEEEEChh
Confidence 45556678999999983 345555433332 1 11122 2222 5543 5678888999999998653
No 134
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=60.71 E-value=95 Score=25.64 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHH----HHHHhCCCcEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDII----HSIIDMDADVI 263 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~----~~l~~~~~d~~ 263 (329)
..+.++.+.+.|++.|++..+.....-...... +.+..+.... +.++.+|+...+....+ ....+.++|++
T Consensus 14 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 14 PVELAKAAAEAGADAIIVGTRSSDPEEAETDDK---EVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHcCCCCEEEEeeEEECcccCCCccc---cHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEE
Confidence 345566777889999999987755421110000 1112222222 25678888866555444 36678899999
Q ss_pred EEEcCCC-----chhHHHHhhhcccCCCeeeeeee
Q 020229 264 TIENSRS-----DEKLLSVFREGVKYGAGIGPGVY 293 (329)
Q Consensus 264 ~lE~~~~-----~~~~l~~l~~~~~~~~~i~~Gvv 293 (329)
.+-.... ..+.++.+.+.+ .+..++..+.
T Consensus 89 ~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 89 EIHGAVGYLAREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred EEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 8887653 234444444322 1445555553
No 135
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=60.22 E-value=1.3e+02 Score=27.13 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCC-CCCceeEEeecccCh-------HHH
Q 020229 180 LLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGV-QDTTQIHTHMCYSNF-------NDI 251 (329)
Q Consensus 180 l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~lH~C~Gn~-------~~i 251 (329)
...+-.+.++..++...+.||++|-+.-.........+..+.+++.++++.+.. +.++.+.++.+.+.. ...
T Consensus 79 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~ 158 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEEL 158 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHH
Confidence 345556677777888889999988775332211112344566778888877643 345788998875542 455
Q ss_pred HHHHHhCC-C--cEEEEEcCC
Q 020229 252 IHSIIDMD-A--DVITIENSR 269 (329)
Q Consensus 252 ~~~l~~~~-~--d~~~lE~~~ 269 (329)
...+.+++ - =++.+|..+
T Consensus 159 ~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 159 KEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred HHHHHhcCCCCCeEEEEEhhh
Confidence 66666654 3 345666543
No 136
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=60.19 E-value=1e+02 Score=25.82 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCC-CceeEEeecccC----hH---HHHHHHHhC
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQD-TTQIHTHMCYSN----FN---DIIHSIIDM 258 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~C~Gn----~~---~i~~~l~~~ 258 (329)
.+++.++.+.+.|++.|.+-- +.+ +.+.+..++ ..++.+++..++ +. .......++
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g---------~~i-------~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP---------GYV-------RLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH---------HHH-------HHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 455667778889999877762 222 222222222 366777777555 44 345556788
Q ss_pred CCcEEEEEcC---CC---chhHHHHhhh---cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHH
Q 020229 259 DADVITIENS---RS---DEKLLSVFRE---GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKM 313 (329)
Q Consensus 259 ~~d~~~lE~~---~~---~~~~l~~l~~---~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a 313 (329)
++|++.+-.. .. .....+.+.+ ..+.+..+.+.+++..+ -+++++.+..+.+
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~---~~~~~~~~~~~~~ 138 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---KTADEIAKAARIA 138 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC---CCHHHHHHHHHHH
Confidence 9999988622 11 2333343332 11125677777776655 4677777665544
No 137
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=60.16 E-value=77 Score=31.03 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCC-CceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
.++++.+.|+++|++.-|... ... .+.+..+.+..+. ....-+|+. +.....++...++++|++++-...
T Consensus 21 ~~~~~~~~Gv~~ie~g~p~~~----~~~----~~~i~~l~~~~~~~~ii~D~kl~-d~g~~~v~~a~~aGAdgV~v~g~~ 91 (430)
T PRK07028 21 IAKEAVAGGADWIEAGTPLIK----SEG----MNAIRTLRKNFPDHTIVADMKTM-DTGAIEVEMAAKAGADIVCILGLA 91 (430)
T ss_pred HHHHHHhcCCcEEEeCCHHHH----Hhh----HHHHHHHHHHCCCCEEEEEeeec-cchHHHHHHHHHcCCCEEEEecCC
Confidence 355667799999998533221 011 2223333332221 112234555 434446788889999999974322
Q ss_pred Cc---hhHHHHhhhcccCCCeeeeeeecCC
Q 020229 270 SD---EKLLSVFREGVKYGAGIGPGVYDIH 296 (329)
Q Consensus 270 ~~---~~~l~~l~~~~~~~~~i~~Gvvd~~ 296 (329)
.. .+..+..++ .+..+++|++++.
T Consensus 92 ~~~~~~~~i~~a~~---~G~~~~~g~~s~~ 118 (430)
T PRK07028 92 DDSTIEDAVRAARK---YGVRLMADLINVP 118 (430)
T ss_pred ChHHHHHHHHHHHH---cCCEEEEEecCCC
Confidence 21 233333332 3667777776653
No 138
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=60.05 E-value=1.4e+02 Score=27.65 Aligned_cols=115 Identities=15% Similarity=0.270 Sum_probs=64.4
Q ss_pred HHHHHHHHCCCC-eEEec-----CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-------HHHHHHHH
Q 020229 190 EVISELKAAGAS-WIQFD-----EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-------NDIIHSII 256 (329)
Q Consensus 190 ~~i~~l~~aG~~-~IQiD-----EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-------~~i~~~l~ 256 (329)
++++.+.++|++ +|.+= +-.|..--.....+.+.++++.+.+. +..+.+|+-.|-+ ...+..+.
T Consensus 127 ~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~---gi~v~~~lI~GlPget~e~~~~t~~~l~ 203 (302)
T TIGR01212 127 DLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKR---GIKVCSHVILGLPGEDREEMMETAKIVS 203 (302)
T ss_pred HHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHc---CCEEEEeEEECCCCCCHHHHHHHHHHHH
Confidence 445566778994 56653 11111100111233456666666532 2567788877742 25677778
Q ss_pred hCCCcEEEEEcCC--CchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCce
Q 020229 257 DMDADVITIENSR--SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNIL 322 (329)
Q Consensus 257 ~~~~d~~~lE~~~--~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l 322 (329)
++++|.+++=.-. .+-...+...+ + .-..-+.++..+.+..+++.++++.+
T Consensus 204 ~l~~d~i~i~~l~~~pgT~L~~~~~~----g-----------~~~~~~~~e~~~~~~~~l~~l~~~~~ 256 (302)
T TIGR01212 204 LLDVDGIKIHPLHVVKGTKMAKMYEK----G-----------ELKTLSLEEYISLACDFLEHLPPEVV 256 (302)
T ss_pred hcCCCEEEEEEEEecCCCHHHHHHHc----C-----------CCCCCCHHHHHHHHHHHHHhCCcCeE
Confidence 8999988873211 22222222221 1 12245678889999999999988654
No 139
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=59.87 E-value=1.4e+02 Score=27.14 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=64.1
Q ss_pred eEEecCCccCCCCC--h--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCC--cEEEEEcCCCchhHH
Q 020229 202 WIQFDEPLLVMDLD--S--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA--DVITIENSRSDEKLL 275 (329)
Q Consensus 202 ~IQiDEP~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~--d~~~lE~~~~~~~~l 275 (329)
++.|-|-.|-+... . .+.+.|...++.+.+ . +.++.+|+- +-..++++.|.+.++ .++.-=|..+...+.
T Consensus 92 ~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~-~--~~Pv~iH~r-~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~ 167 (258)
T PRK11449 92 VVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKR-Y--DLPVILHSR-RTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAE 167 (258)
T ss_pred EEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHH-h--CCCEEEEec-CccHHHHHHHHhcCCCCCeEEEcCCCCHHHHH
Confidence 56666655443211 1 223445555555443 3 367899987 778888888887543 333222444445555
Q ss_pred HHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCC
Q 020229 276 SVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDL 328 (329)
Q Consensus 276 ~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdC 328 (329)
+.+. .|-.+++|-.-+.. . .+.++++++.+|.+++.+-+|+
T Consensus 168 ~~l~----~G~~iS~~g~it~~----~----~~~~~~~~~~ipldriL~ETD~ 208 (258)
T PRK11449 168 RFVQ----LGYKIGVGGTITYP----R----ASKTRDVIAKLPLASLLLETDA 208 (258)
T ss_pred HHHH----CCCEEEeCcccccc----C----cHHHHHHHHhCChhhEEEecCC
Confidence 5554 25555544322211 1 2467888899999999998886
No 140
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.41 E-value=81 Score=29.42 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccC-CCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLV-MDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
.+++.++.+.+.|++-|.+---+-- ..++.++...+.++. .+...+++++++|+.--++.+ ......++++|+
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~---~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~ 106 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATV---VETVAGRVPVFVGATTLNTRDTIARTRALLDLGADG 106 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHH---HHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCE
Confidence 4566678888999998877533211 124556654444433 232333477888888445554 344446789998
Q ss_pred EEEEcC---C-CchhHHHHhhh
Q 020229 263 ITIENS---R-SDEKLLSVFRE 280 (329)
Q Consensus 263 ~~lE~~---~-~~~~~l~~l~~ 280 (329)
+.+=.. . +..++.+.++.
T Consensus 107 vlv~~P~y~~~~~~~l~~yf~~ 128 (309)
T cd00952 107 TMLGRPMWLPLDVDTAVQFYRD 128 (309)
T ss_pred EEECCCcCCCCCHHHHHHHHHH
Confidence 887633 2 23455555543
No 141
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=59.41 E-value=69 Score=32.98 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
|.+.++++.++||+.|.|=|..-. +.+..+..++.++.... +++ ..+|.|.=.|... ...| .+.++|.+..
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~--~~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt~Gla~--An~laAv~aGad~vD~ 228 (592)
T PRK09282 156 YVELAKELEEMGCDSICIKDMAGL--LTPYAAYELVKALKEEV-DLP--VQLHSHCTSGLAP--MTYLKAVEAGVDIIDT 228 (592)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCC--cCHHHHHHHHHHHHHhC-CCe--EEEEEcCCCCcHH--HHHHHHHHhCCCEEEe
Confidence 444566677899999999987743 34555544454444433 132 4455555556443 3333 4667776655
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 229 ai 230 (592)
T PRK09282 229 AI 230 (592)
T ss_pred ec
Confidence 43
No 142
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=59.10 E-value=1.4e+02 Score=27.18 Aligned_cols=139 Identities=9% Similarity=0.077 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEec----CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFD----EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII 256 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiD----EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~ 256 (329)
++++.+.-.++++.|.+.|+|-|.+. -|... +.+++....+.....++.+.++ .++++.+=+-+...-+..-.
T Consensus 23 ~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~-~~~p~tva~m~~i~~~v~~~~~--~p~GvnvL~nd~~aal~iA~ 99 (257)
T TIGR00259 23 LNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLK-EVDPETVAAMAVIAGQLKSDVS--IPLGINVLRNDAVAALAIAM 99 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcC-CCCHHHHHHHHHHHHHHHHhcC--CCeeeeeecCCCHHHHHHHH
Confidence 46677777888999999999977775 35544 5666766666666666666564 46777777644443455555
Q ss_pred hCCCcEEEEEcC-----CC-------chhHHHHhhhcccCCCeeeeeeecCC-CCCCCCHHHHHHHHHHHHHhcCCCceE
Q 020229 257 DMDADVITIENS-----RS-------DEKLLSVFREGVKYGAGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLETNILW 323 (329)
Q Consensus 257 ~~~~d~~~lE~~-----~~-------~~~~l~~l~~~~~~~~~i~~Gvvd~~-~~~~e~~e~i~~ri~~a~~~v~~~~l~ 323 (329)
..++|-+-++.. .. ..+.++.-+ .+. ...-++.-|..+ ...+. .-.+.+.++.+...-.++=++
T Consensus 100 a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~-~l~-~~v~i~adV~~kh~~~l~-~~~~~e~a~~~~~~~~aDavi 176 (257)
T TIGR00259 100 AVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKK-LLG-SEVKILADIVVKHAVHLG-NRDLESIALDTVERGLADAVI 176 (257)
T ss_pred HhCCCEEEEccEeeeEecccccccccHHHHHHHHH-HcC-CCcEEEeceeecccCcCC-CCCHHHHHHHHHHhcCCCEEE
Confidence 667776666521 11 113333322 233 344555555553 33221 123444455554444456666
Q ss_pred eC
Q 020229 324 VN 325 (329)
Q Consensus 324 is 325 (329)
+|
T Consensus 177 vt 178 (257)
T TIGR00259 177 LS 178 (257)
T ss_pred EC
Confidence 65
No 143
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=59.09 E-value=70 Score=32.92 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
|.+.++.+.++||+.|.|=|..-. +.+..+..++.++.... +++ ..+|.|.=.|... ...| .+.++|.+..
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~--l~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt~GlA~--An~laAieAGa~~vD~ 229 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGL--LKPYAAYELVSRIKKRV-DVP--LHLHCHATTGLST--ATLLKAIEAGIDGVDT 229 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC--cCHHHHHHHHHHHHHhc-CCe--EEEEECCCCchHH--HHHHHHHHcCCCEEEe
Confidence 444455677899999999988743 34566655555554433 232 3444454455432 3333 4567776555
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 230 ai 231 (593)
T PRK14040 230 AI 231 (593)
T ss_pred cc
Confidence 43
No 144
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=58.86 E-value=1.8e+02 Score=28.09 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=69.4
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHc-CCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNC-GVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
+.++.|.++|++.|.+--|..+ +.+.+.+ +.+.+ +. ...+..+ |+.+.. -++...+++++.+.+=.+
T Consensus 30 ~ia~~L~~~GV~~IE~G~p~~~----~~~~e~i----~~i~~~~~--~~~i~~~-~r~~~~-di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 30 AIARMLDEIGVDQIEAGFPAVS----EDEKEAI----KAIAKLGL--NASILAL-NRAVKS-DIDASIDCGVDAVHIFIA 97 (378)
T ss_pred HHHHHHHHhCCCEEEEeCCCcC----hHHHHHH----HHHHhcCC--CeEEEEE-cccCHH-HHHHHHhCCcCEEEEEEc
Confidence 3456788999999998766643 3333222 22222 22 2344333 555443 366677888888887665
Q ss_pred CCc-----------hhHHHHhhh----cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 269 RSD-----------EKLLSVFRE----GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 269 ~~~-----------~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
.+. .+.++.+.+ -...+..+.++..|... -+++.+.+.++++.+ .|.+++.+.--
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r---~~~~~l~~~~~~~~~-~Ga~~I~l~DT 167 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR---TDLDFLIEFAKAAEE-AGADRVRFCDT 167 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC---CCHHHHHHHHHHHHh-CCCCEEEEecc
Confidence 332 222332221 11235567777665432 467888877777754 57787777543
No 145
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.83 E-value=74 Score=31.72 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEe--ecccChHHHHHHH--HhCCCcEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTH--MCYSNFNDIIHSI--IDMDADVI 263 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH--~C~Gn~~~i~~~l--~~~~~d~~ 263 (329)
|.+.++.+.++||+.|.|-|.+-. +.+..+..++.++.+. . +.++++| .=.|... ...+ .+.++|.+
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG~--l~P~~v~~Lv~alk~~---~--~~pi~~H~Hnt~GlA~--An~laAieAGad~v 235 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAGI--LTPKAAKELVSGIKAM---T--NLPLIVHTHATSGISQ--MTYLAAVEAGADRI 235 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC--cCHHHHHHHHHHHHhc---c--CCeEEEEeCCCCccHH--HHHHHHHHcCCCEE
Confidence 334455667899999999988743 3456665555555432 1 2444554 4445432 3333 46677766
Q ss_pred EEEc
Q 020229 264 TIEN 267 (329)
Q Consensus 264 ~lE~ 267 (329)
..=.
T Consensus 236 D~ai 239 (468)
T PRK12581 236 DTAL 239 (468)
T ss_pred Eeec
Confidence 5553
No 146
>PRK07695 transcriptional regulator TenI; Provisional
Probab=58.59 E-value=1.2e+02 Score=26.11 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 195 LKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 195 l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+.++|+++||+.++.+. ..++..+...+... +.+ ...+.+|-- .+...+.++|++++-...
T Consensus 23 ~~~~g~~~iqlR~k~~~----~~~~~~~~~~l~~~--~~~-~~~liin~~-------~~la~~~~~~gvHl~~~~ 83 (201)
T PRK07695 23 QIHSEVDYIHIREREKS----AKELYEGVESLLKK--GVP-ASKLIINDR-------VDIALLLNIHRVQLGYRS 83 (201)
T ss_pred HHhCCCCEEEEcCCCCC----HHHHHHHHHHHHHh--CCC-CCeEEEECH-------HHHHHHcCCCEEEeCccc
Confidence 56889999999999855 33443333332221 222 234556532 556677788888887643
No 147
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=58.37 E-value=1.8e+02 Score=28.01 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCC-Ch-HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDL-DS-HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVI 263 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~ 263 (329)
.+.+.++...|++.|-.||....... +- +-++.+.++.+++.+.-.+.......+. |..++ ..+...+.+++++
T Consensus 144 a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit-a~~~em~~ra~~a~~~Ga~~v 222 (364)
T cd08210 144 AELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT-GPPTQLLERARFAKEAGAGGV 222 (364)
T ss_pred HHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC-CCHHHHHHHHHHHHHcCCCEE
Confidence 33445677899999999997644322 22 3346677777777643322234444555 55543 4556678899999
Q ss_pred EEEcCCCchhHHHHh
Q 020229 264 TIENSRSDEKLLSVF 278 (329)
Q Consensus 264 ~lE~~~~~~~~l~~l 278 (329)
-+.....+...++.+
T Consensus 223 Mv~~~~~G~~~~~~l 237 (364)
T cd08210 223 LIAPGLTGLDTFREL 237 (364)
T ss_pred EeecccchHHHHHHH
Confidence 888765544333333
No 148
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.27 E-value=82 Score=29.15 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEEEc
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITIEN 267 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~lE~ 267 (329)
+.++.+.++|++.|.|-|..-. ..+..+..++..+.+....+ ...+|.|.=+|-. +...+ .+.+++.++.=.
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~--~~P~~v~~lv~~l~~~~~~~--~i~~H~Hn~~Gla--~AN~laA~~aG~~~id~s~ 232 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGV--GTPGQVRAVLEAVLAEFPAE--RLAGHFHDTYGQA--LANIYASLEEGITVFDASV 232 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCc--cCHHHHHHHHHHHHHhCCCC--eEEEEecCCCCcH--HHHHHHHHHhCCCEEEEEc
Confidence 3355677789999999887744 24555544444433322212 2444555555533 34444 467888776554
Q ss_pred C
Q 020229 268 S 268 (329)
Q Consensus 268 ~ 268 (329)
.
T Consensus 233 ~ 233 (287)
T PRK05692 233 G 233 (287)
T ss_pred c
Confidence 3
No 149
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=58.15 E-value=96 Score=28.65 Aligned_cols=76 Identities=9% Similarity=0.021 Sum_probs=47.7
Q ss_pred HHHHHHCCCC-eEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCC
Q 020229 192 ISELKAAGAS-WIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 270 (329)
Q Consensus 192 i~~l~~aG~~-~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~ 270 (329)
+++..+.++. +||+.+-.+.+... ++.+......+.+..+- +++.+|.|-|..-+.+....+.+++.+-++-+..
T Consensus 33 i~aAe~~~~PvIl~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~-vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l 108 (282)
T TIGR01859 33 LEAAEEENSPVIIQVSEGAIKYMGG---YKMAVAMVKTLIERMSI-VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL 108 (282)
T ss_pred HHHHHHhCCCEEEEcCcchhhccCc---HHHHHHHHHHHHHHCCC-CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4455566777 78887665543211 22234444445554421 6889999988654556666788999999997764
Q ss_pred c
Q 020229 271 D 271 (329)
Q Consensus 271 ~ 271 (329)
+
T Consensus 109 ~ 109 (282)
T TIGR01859 109 P 109 (282)
T ss_pred C
Confidence 3
No 150
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=57.66 E-value=1.4e+02 Score=29.27 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=57.9
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~~lE 266 (329)
..++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+...-..+++ |.... ..+.+.+.+.+++-++
T Consensus 166 ~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~ 244 (412)
T TIGR03326 166 AYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANIT-APVREMERRAELVADLGGQYVMVD 244 (412)
T ss_pred HHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEec-CCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4457788999999999864433333 3346677777777654322233455666 76653 4556678899999999
Q ss_pred cCCCchhHHHHhhh
Q 020229 267 NSRSDEKLLSVFRE 280 (329)
Q Consensus 267 ~~~~~~~~l~~l~~ 280 (329)
+...+...++.+.+
T Consensus 245 ~~~~G~~~l~~l~~ 258 (412)
T TIGR03326 245 VVVCGWSALQYIRE 258 (412)
T ss_pred eeccchHHHHHHHH
Confidence 88766666666653
No 151
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=57.64 E-value=1.2e+02 Score=29.48 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~~lE 266 (329)
+.++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+...-.+.++ |.... ..+.+.+.+.+++-++
T Consensus 146 ~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~ 224 (391)
T cd08209 146 LREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLT-GPVFTLKEKARRLVEAGANALLFN 224 (391)
T ss_pred HHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3457778999999999865444443 3446677787777653322233345556 76653 4566678899999999
Q ss_pred cCCCchhHHHHhhh
Q 020229 267 NSRSDEKLLSVFRE 280 (329)
Q Consensus 267 ~~~~~~~~l~~l~~ 280 (329)
+...+...++.+.+
T Consensus 225 ~~~~G~~~l~~l~~ 238 (391)
T cd08209 225 VFAYGLDVLEALAS 238 (391)
T ss_pred ccccchHHHHHHHh
Confidence 87777666666664
No 152
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=57.47 E-value=14 Score=30.28 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=25.1
Q ss_pred CeeeeeeecCCCC-CCCCHHHHHHHHHHHHHhcC
Q 020229 286 AGIGPGVYDIHSP-RIPSTEEIADRINKMLAVLE 318 (329)
Q Consensus 286 ~~i~~Gvvd~~~~-~~e~~e~i~~ri~~a~~~v~ 318 (329)
..-++||||..++ .+|+-+++++| ++.++.++
T Consensus 127 grgvlGVvDG~sp~gvE~d~d~~~R-r~~lr~Ig 159 (162)
T COG1839 127 GRGVLGVVDGYSPLGVETDEDIAER-RELLRKIG 159 (162)
T ss_pred CceEEEEecCCCCcccccHHHHHHH-HHHHHHhc
Confidence 4678999999877 69999999887 45556655
No 153
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=57.13 E-value=1.8e+02 Score=30.87 Aligned_cols=66 Identities=8% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 270 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~ 270 (329)
.++++.++|+++||+-++.+. ..++..+...+..+++.. +.++.+|-- ++.-.++++| +|+.....
T Consensus 24 ~l~~~l~~g~~~iqlR~K~~~----~~~~~~~a~~l~~l~~~~--~~~liind~-------~~la~~~~~d-VHlg~~dl 89 (755)
T PRK09517 24 IVDSAISGGVSVVQLRDKNAG----VEDVRAAAKELKELCDAR--GVALVVNDR-------LDVAVELGLH-VHIGQGDT 89 (755)
T ss_pred HHHHHHhcCCCEEEEeCCCCC----HHHHHHHHHHHHHHHHHh--CCeEEEeCh-------HHHHHHcCCC-eecCCCcC
Confidence 445666789999999988754 444444444444444322 245556532 5556678888 88876543
No 154
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=57.04 E-value=80 Score=32.44 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
|.+.++++.++||+.|.|=|..-. +.+..+..++.++.... +++ ..+|.|.=.|... ...| .+.++|.+..
T Consensus 151 ~~~~~~~~~~~Gad~I~i~Dt~G~--~~P~~v~~lv~~lk~~~-~~p--i~~H~Hnt~Gla~--An~laAveaGa~~vd~ 223 (582)
T TIGR01108 151 YLDLAEELLEMGVDSICIKDMAGI--LTPKAAYELVSALKKRF-GLP--VHLHSHATTGMAE--MALLKAIEAGADGIDT 223 (582)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC--cCHHHHHHHHHHHHHhC-CCc--eEEEecCCCCcHH--HHHHHHHHhCCCEEEe
Confidence 334456677899999999988743 34555544444444333 132 4445555555432 3333 4566666555
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 224 ai 225 (582)
T TIGR01108 224 AI 225 (582)
T ss_pred cc
Confidence 43
No 155
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=56.93 E-value=1e+02 Score=26.99 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=45.9
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 270 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~ 270 (329)
.++++.+.|++.||+-.-. +... +.+..+.+..+.++.++..+-.- .+-++...+++++.+..-....
T Consensus 27 ~~~a~~~gGi~~iEvt~~~------~~~~----~~i~~l~~~~~~~~~iGaGTV~~--~~~~~~a~~aGA~fivsp~~~~ 94 (206)
T PRK09140 27 HVGALIEAGFRAIEIPLNS------PDPF----DSIAALVKALGDRALIGAGTVLS--PEQVDRLADAGGRLIVTPNTDP 94 (206)
T ss_pred HHHHHHHCCCCEEEEeCCC------ccHH----HHHHHHHHHcCCCcEEeEEecCC--HHHHHHHHHcCCCEEECCCCCH
Confidence 3567888999999997322 1111 13344444444335566655432 2346777888888887754332
Q ss_pred chhHHHHhhhcccCCCeeeee
Q 020229 271 DEKLLSVFREGVKYGAGIGPG 291 (329)
Q Consensus 271 ~~~~l~~l~~~~~~~~~i~~G 291 (329)
+..+.... .+..+++|
T Consensus 95 --~v~~~~~~---~~~~~~~G 110 (206)
T PRK09140 95 --EVIRRAVA---LGMVVMPG 110 (206)
T ss_pred --HHHHHHHH---CCCcEEcc
Confidence 22222221 24566666
No 156
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=56.45 E-value=69 Score=34.02 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCC-------------hHH-HHHHHHHHHHHHcCCCCCceeEEee
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLD-------------SHK-LHAFIHSFRITNCGVQDTTQIHTHM 243 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~i~lH~ 243 (329)
++.+.+.|.+.++...++|++.|+|.--- +.-.++ -+. .+-..+.++.+.+.++.+.++++-+
T Consensus 546 I~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri 625 (765)
T PRK08255 546 MDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRI 625 (765)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 46778888888888899999999998431 110111 111 2334566666666666567888877
Q ss_pred cccC-------hH---HHHHHHHhCCCcEEEEE
Q 020229 244 CYSN-------FN---DIIHSIIDMDADVITIE 266 (329)
Q Consensus 244 C~Gn-------~~---~i~~~l~~~~~d~~~lE 266 (329)
.-.+ .+ .+++.|.+.++|.+++=
T Consensus 626 ~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 626 SAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred ccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 7311 11 46677778899999884
No 157
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=56.41 E-value=1.4e+02 Score=26.33 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHHHH-HhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCC-CCCCCHHHHHHHHHHHHHh-cCCCceEeCCC
Q 020229 251 IIHSI-IDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHS-PRIPSTEEIADRINKMLAV-LETNILWVNPD 327 (329)
Q Consensus 251 i~~~l-~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~-~~~e~~e~i~~ri~~a~~~-v~~~~l~ispd 327 (329)
++..+ ....+|.+.+|+.......-+.+..... +..-+++ +-++ ..-.+.+++...++++.+. .+-=++.+.|.
T Consensus 83 ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~--S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 83 ELKRAADSPGPDFVDIELFLPDDAVKELINIAKK-GGTKIIM--SYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred HHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHH-CCCEEEE--eccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence 34444 4667899999987653332222221001 2222222 3333 2345567888888877544 12233444443
No 158
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=56.31 E-value=1.5e+02 Score=26.58 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=63.6
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc-----cCh-------HHHHHHHHh
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY-----SNF-------NDIIHSIID 257 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~-----Gn~-------~~i~~~l~~ 257 (329)
+.+......+|+++-+-==.|..+ .....+...+ .+..+. -+ .+-+|+ |++ -.++..+.+
T Consensus 18 e~~~~~~~~~~Di~E~RvD~l~~~---~~~~~~~~~~---~e~~~~-~~-~IfT~R~~~EGG~~~~~~~~~i~ll~~la~ 89 (231)
T COG0710 18 EQAEKSKELDADIVELRVDLLESN---VEVLEVAKAL---REKDPD-KP-LIFTFRTVKEGGEFPGSEEEYIELLKKLAE 89 (231)
T ss_pred HHHHHhhccCCCEEEEeechhccc---chHHHHHHHH---HHhccC-Cc-eEEEEeehhhcCCCCCCHHHHHHHHHHHHh
Confidence 344556667888766542233311 1221222222 222221 12 466776 442 256777777
Q ss_pred CC-CcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCC-CCCCHHHHHHHHHHHHHhc-CCCceEeCCC
Q 020229 258 MD-ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSP-RIPSTEEIADRINKMLAVL-ETNILWVNPD 327 (329)
Q Consensus 258 ~~-~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~-~~e~~e~i~~ri~~a~~~v-~~~~l~ispd 327 (329)
++ +|.+.+|+........+.++- .+... =++|-|+- ...+.|++..++.++.+.= +-=++.++|+
T Consensus 90 ~~~~d~iDiEl~~~~~~~~~~~~~----~~~~~-vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~ 157 (231)
T COG0710 90 LNGPDYIDIELSSPEDDVKEIIKF----AKKHG-VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQ 157 (231)
T ss_pred hcCCCEEEEEccCcchhHHHHHhc----cccCC-EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCC
Confidence 75 999999998754332333331 11111 12344443 3455699999999986553 2234455543
No 159
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=56.25 E-value=1.5e+02 Score=26.52 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=40.2
Q ss_pred HHHHHCCCCeEEecCCccCCCCChHHH-HHHHH--------HHHHHHcCCCCCceeEEeeccc----ChHHHHHHHHhCC
Q 020229 193 SELKAAGASWIQFDEPLLVMDLDSHKL-HAFIH--------SFRITNCGVQDTTQIHTHMCYS----NFNDIIHSIIDMD 259 (329)
Q Consensus 193 ~~l~~aG~~~IQiDEP~l~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~i~lH~C~G----n~~~i~~~l~~~~ 259 (329)
+.+.++ ++.|.|.=|.--...+...+ ++..+ .+..+.+.. +.++++|+++. +....++.+.+++
T Consensus 25 ~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~--~~Pl~lM~y~n~~~~~~~~~i~~~~~~G 101 (244)
T PRK13125 25 IGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDV--SVPIILMTYLEDYVDSLDNFLNMARDVG 101 (244)
T ss_pred HHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccC--CCCEEEEEecchhhhCHHHHHHHHHHcC
Confidence 345455 88888886552221222333 22222 334443322 35667777643 3456788889999
Q ss_pred CcEEEEE
Q 020229 260 ADVITIE 266 (329)
Q Consensus 260 ~d~~~lE 266 (329)
+|++.+-
T Consensus 102 adgvii~ 108 (244)
T PRK13125 102 ADGVLFP 108 (244)
T ss_pred CCEEEEC
Confidence 9999973
No 160
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.21 E-value=1.6e+02 Score=28.06 Aligned_cols=89 Identities=10% Similarity=0.118 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCC-------------hH-HHHHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLD-------------SH-KLHAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ ++.+.+.+.+.++...++|++.|+|.--- |...++ .+ ..+...+.++.+.+.++.+..
T Consensus 128 t~~e-I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~ 206 (353)
T cd02930 128 SEEE-IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFI 206 (353)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 4444 46778888888888999999999995310 111111 11 123345666777766665667
Q ss_pred eEEeecc------c-Ch---HHHHHHHHhCCCcEEEE
Q 020229 239 IHTHMCY------S-NF---NDIIHSIIDMDADVITI 265 (329)
Q Consensus 239 i~lH~C~------G-n~---~~i~~~l~~~~~d~~~l 265 (329)
+.+-+-. | +. ..+++.|.+.++|.+++
T Consensus 207 v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 207 IIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred EEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 7665542 1 11 15677788889999988
No 161
>PLN02692 alpha-galactosidase
Probab=55.94 E-value=57 Score=31.92 Aligned_cols=88 Identities=7% Similarity=0.072 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCC--------ChHHH-HHHHHHHHHHHcCCCCCceeEEeecccC
Q 020229 177 LLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDL--------DSHKL-HAFIHSFRITNCGVQDTTQIHTHMCYSN 247 (329)
Q Consensus 177 ~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C~Gn 247 (329)
.++.+.+.|+++.. ..|.++|.++|+||+-...... ++..+ .-+....+.+.+ .+.+.++|++.|.
T Consensus 71 ~E~~i~~~ad~~~~--~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~---~GLKfGIy~d~G~ 145 (412)
T PLN02692 71 DEKMIKETADALVS--TGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHS---KGLKLGIYSDAGY 145 (412)
T ss_pred CHHHHHHHHHHHHh--ccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHH---CCCceEEEecCCc
Confidence 36667777776654 4578899999999997654211 11221 112222233332 1356677764432
Q ss_pred h-------------HHHHHHHHhCCCcEEEEEcCC
Q 020229 248 F-------------NDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 248 ~-------------~~i~~~l~~~~~d~~~lE~~~ 269 (329)
. +.-+..+.+-+||.+-+|.+.
T Consensus 146 ~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~ 180 (412)
T PLN02692 146 FTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCN 180 (412)
T ss_pred cccCCCCCCchHHHHHHHHHHHhcCCCEEeccccC
Confidence 1 245677788899999999874
No 162
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=55.83 E-value=1.7e+02 Score=27.08 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=59.2
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHc-CC-CCCce--eEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNC-GV-QDTTQ--IHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~--i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
+.++.|.++|++.|.+==|.++ +.+.+ +++.+.+ +. +.+.+ ...+...|+.+..++...+++.+.+++
T Consensus 27 ~ia~~L~~~Gv~~IE~gfP~~~----~~e~e----~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~~~~~v~i 98 (284)
T cd07942 27 RFFKLLVKIGFKEIEVGFPSAS----QTDFD----FVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGAKKAIVHL 98 (284)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----HHHHH----HHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCCCCCEEEE
Confidence 3456788999999988755543 33332 2233322 22 11222 334555555555555544555457777
Q ss_pred EcCCC-----------chhHHHHhhhcc----cCCC-ee--eeee-ecCCCCCCCCHHHHHHHHHHHHHhcC
Q 020229 266 ENSRS-----------DEKLLSVFREGV----KYGA-GI--GPGV-YDIHSPRIPSTEEIADRINKMLAVLE 318 (329)
Q Consensus 266 E~~~~-----------~~~~l~~l~~~~----~~~~-~i--~~Gv-vd~~~~~~e~~e~i~~ri~~a~~~v~ 318 (329)
-++.+ ..+.++.+.+.+ ..+. .+ .+|+ +..-...--+++.+.+-++++.+.-+
T Consensus 99 ~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~ 170 (284)
T cd07942 99 YNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQ 170 (284)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhc
Confidence 76532 223333333211 0111 11 1232 12222224678888888888876553
No 163
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=55.63 E-value=1.7e+02 Score=26.82 Aligned_cols=131 Identities=10% Similarity=0.076 Sum_probs=67.6
Q ss_pred HHHHHHHCCCCeEEecCCcc-CC---CCChHHHHHHHHHHHHHHcCCCCCceeEEeecccC------------hHHHHHH
Q 020229 191 VISELKAAGASWIQFDEPLL-VM---DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSN------------FNDIIHS 254 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn------------~~~i~~~ 254 (329)
.++.|.++|+++|.+=-|+. .. ..+..+.+.+ +.+.+..+ +.++..+ |+|. ....++.
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i----~~~~~~~~-~~~l~~~-~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERL----RELRKAMP-NTPLQML-LRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHH----HHHHHhCC-CCceehh-cccccccCccCCCcHHHHHHHHH
Confidence 46678899999999887872 10 1122222222 22222222 2444444 4441 1234556
Q ss_pred HHhCCCcEEEEEcCCCc-hhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 255 IIDMDADVITIENSRSD-EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 255 l~~~~~d~~~lE~~~~~-~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
..++++|.+.+-...+. ....+.+..-...+..+..++ +.-....-+++.+.+.++++.+ .|.+++++.--.|
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i-~~~~~~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~G 173 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAI-CYTGSPVHTLEYYVKLAKELED-MGADSICIKDMAG 173 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEE-EecCCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCC
Confidence 67778888887554332 222222221112354554433 3211134577888887777754 4778887764433
No 164
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=55.44 E-value=73 Score=35.55 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
|.+.++.+.++||+.|.|-|.+-. +.+.....++.++.... +++ ..+|.|.=.|... ...+ .+.++|.++.
T Consensus 691 ~~~~ak~l~~~Gad~I~ikDt~Gl--l~P~~~~~Lv~~lk~~~-~~p--i~~H~Hdt~Gla~--an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGIKDMAGL--LKPAAAKLLIKALREKT-DLP--IHFHTHDTSGIAV--ASMLAAVEAGVDVVDV 763 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCC--cCHHHHHHHHHHHHHhc-CCe--EEEEECCCCCcHH--HHHHHHHHhCCCEEEe
Confidence 444556678899999999988743 34555555555554443 332 4444454456543 3333 4667777655
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 764 ai 765 (1143)
T TIGR01235 764 AV 765 (1143)
T ss_pred cc
Confidence 43
No 165
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=54.98 E-value=1.2e+02 Score=25.16 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeeccc--C-------hHHHHHHHHhCCC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYS--N-------FNDIIHSIIDMDA 260 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G--n-------~~~i~~~l~~~~~ 260 (329)
.......+.|+..|-|.||.+.. .-.+..|++..+.+++..+....|.|.++.. + +..+-..|...++
T Consensus 9 ~LFg~Yl~d~~~~I~ieDPYir~---~hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI 85 (148)
T cd02685 9 RLFGPYLDDGVTEITVEDPYIRN---FHQIRNFLRFCELVVKPPCELKYIHLVTGEDEDNGKQQIEALEEIKQSLASHGV 85 (148)
T ss_pred HHHHHHHhCCceEEEEeCccccc---hHHHHHHHHHHHHHhcCccceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCc
Confidence 33445566799999999999874 3456777888777776444333444444421 1 2245555556666
Q ss_pred cEEEEEcCC
Q 020229 261 DVITIENSR 269 (329)
Q Consensus 261 d~~~lE~~~ 269 (329)
. +.++|+.
T Consensus 86 ~-~~~~f~~ 93 (148)
T cd02685 86 E-FTWEFSD 93 (148)
T ss_pred E-EEEEECC
Confidence 5 6777763
No 166
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=54.97 E-value=1e+02 Score=26.31 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
+.++++.+.|+++||++.-. +... +.+..+.+..+ +..++..+.- ..+-++...++++|+++..
T Consensus 20 ~~~~~l~~~G~~~vev~~~~------~~~~----~~i~~l~~~~~-~~~iGag~v~--~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 20 ALAEALIEGGIRAIEITLRT------PGAL----EAIRALRKEFP-EALIGAGTVL--TPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred HHHHHHHHCCCCEEEEeCCC------hhHH----HHHHHHHHHCC-CCEEEEEeCC--CHHHHHHHHHcCCCEEEcC
Confidence 34567889999999998321 1111 12333333333 2334333331 1234677778888888754
No 167
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=54.61 E-value=14 Score=21.53 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=19.6
Q ss_pred HHHHHHHHHhC---CCCCHHHHHHHHHH
Q 020229 16 ELKFALESFWD---GKSSAEDLQKVSAD 40 (329)
Q Consensus 16 eL~~a~~~~~~---g~is~~el~~~~~~ 40 (329)
|++++.+.|.+ |.||.+||.++..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 56777888865 67999999988754
No 168
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=54.32 E-value=1.1e+02 Score=27.78 Aligned_cols=74 Identities=11% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCC-CceeEEeecccChH-HHHHHHHhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQD-TTQIHTHMCYSNFN-DIIHSIIDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~l 265 (329)
+.+.++.+.++|++.|.|-|..-. +.+..+..+...+.+ ..+. ..-+|.|.=+|-.. ..+.. .+.+++.+.-
T Consensus 143 ~~~~~~~~~~~G~d~i~l~DT~G~--~~P~~v~~lv~~l~~---~~~~~~l~~H~Hn~~GlA~AN~laA-i~aGa~~vd~ 216 (263)
T cd07943 143 LAEQAKLMESYGADCVYVTDSAGA--MLPDDVRERVRALRE---ALDPTPVGFHGHNNLGLAVANSLAA-VEAGATRIDG 216 (263)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCC--cCHHHHHHHHHHHHH---hCCCceEEEEecCCcchHHHHHHHH-HHhCCCEEEe
Confidence 344455677899999999887744 346666544444443 3332 24445555555322 12222 3568886554
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 217 s~ 218 (263)
T cd07943 217 SL 218 (263)
T ss_pred ec
Confidence 43
No 169
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=53.95 E-value=1.7e+02 Score=28.67 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=57.0
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~~lE 266 (329)
..++...|+|+|-=||....-...+ +-+.++.++++++.+.-.+...-.++++ |+... ..+...+.+++++-+.
T Consensus 156 ~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~a~~~G~~~~m~~ 234 (407)
T PRK09549 156 LRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLT-GRTFELKEKAKRAAEAGADALLFN 234 (407)
T ss_pred HHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCHHHHHHHHHHHHHcCCCeEEEe
Confidence 3456778999999999864433333 3446677777777654322233345555 66553 4566678899999999
Q ss_pred cCCCchhHHHHhhh
Q 020229 267 NSRSDEKLLSVFRE 280 (329)
Q Consensus 267 ~~~~~~~~l~~l~~ 280 (329)
+...++..++.+.+
T Consensus 235 ~~~~G~~al~~l~~ 248 (407)
T PRK09549 235 VFAYGLDVLQSLAE 248 (407)
T ss_pred ccccchHHHHHHHh
Confidence 87766666666653
No 170
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.93 E-value=1.3e+02 Score=28.61 Aligned_cols=87 Identities=7% Similarity=0.098 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCCh-------------HH-HHHHHHHHHHHHcCCCCCceeEEe
Q 020229 180 LLPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLDS-------------HK-LHAFIHSFRITNCGVQDTTQIHTH 242 (329)
Q Consensus 180 l~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~i~lH 242 (329)
-++.+.+.+.+..+.+.++|++.|+|.--- |+..+|+ +. .+-..+.+..+.+.++.+ .+++-
T Consensus 146 eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~v~vR 224 (338)
T cd02933 146 EIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-RVGIR 224 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-ceEEE
Confidence 357888889898999999999999998322 1111221 11 123345566666555544 47777
Q ss_pred ecc---------cCh----HHHHHHHHhCCCcEEEEEc
Q 020229 243 MCY---------SNF----NDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 243 ~C~---------Gn~----~~i~~~l~~~~~d~~~lE~ 267 (329)
+.- |+. ..++..|.+.++|.+++-.
T Consensus 225 is~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 225 LSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred ECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 652 222 2467777788999999853
No 171
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=53.90 E-value=1.9e+02 Score=27.88 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=50.0
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCC-CChH-HHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMD-LDSH-KLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
+.+.+..+.+.|++.|..||..-... ++.+ .++.+.++.+++.+.-.....+...++ +...+ ..+...++++|+
T Consensus 148 la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~ 226 (367)
T cd08205 148 LAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNIT-GDPDELRRRADRAVEAGANA 226 (367)
T ss_pred HHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHcCCCE
Confidence 34445668889999999998764332 3333 345566777776642211233444555 55543 445557789999
Q ss_pred EEEEcCCC
Q 020229 263 ITIENSRS 270 (329)
Q Consensus 263 ~~lE~~~~ 270 (329)
+-+.....
T Consensus 227 vmv~~~~~ 234 (367)
T cd08205 227 LLINPNLV 234 (367)
T ss_pred EEEecccc
Confidence 99886543
No 172
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=53.78 E-value=1.8e+02 Score=27.56 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=58.9
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc-----------cC-hHHHHHHHHhC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY-----------SN-FNDIIHSIIDM 258 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~-----------Gn-~~~i~~~l~~~ 258 (329)
.++...+.|++-|.|-- .... ...++.+.+.++.+.+..| .+.+|.|. |. ..+.+..|.++
T Consensus 87 ~a~~~~~~G~~~v~l~~---G~~p-~~~~~~~~e~i~~Ik~~~p---~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeA 159 (351)
T TIGR03700 87 RVKEAYAPGATEVHIVG---GLHP-NLPFEWYLDMIRTLKEAYP---DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEA 159 (351)
T ss_pred HHHHHHHCCCcEEEEec---CCCC-CCCHHHHHHHHHHHHHHCC---CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 34556778998666641 1111 1224445666666665554 23344431 22 23568889999
Q ss_pred CCcEEE---EEcCC--------C---c-hhHHHHhhh----cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHH
Q 020229 259 DADVIT---IENSR--------S---D-EKLLSVFRE----GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 315 (329)
Q Consensus 259 ~~d~~~---lE~~~--------~---~-~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~ 315 (329)
++|.+. +|... . . .+.++.++. .++....+.+|. .||+++..+.+....+
T Consensus 160 Gld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl-------gEt~edrv~~l~~Lr~ 228 (351)
T TIGR03700 160 GLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGH-------IETPAHRVDHMLRLRE 228 (351)
T ss_pred CCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC-------CCCHHHHHHHHHHHHH
Confidence 998774 66421 1 1 222344442 122223444444 3889888888777544
No 173
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=53.36 E-value=1.6e+02 Score=28.30 Aligned_cols=88 Identities=9% Similarity=0.109 Sum_probs=57.8
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~~lE 266 (329)
..++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+...-..+++ |.... ..+.+.+.+.+++-++
T Consensus 149 ~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~ 227 (366)
T cd08148 149 AYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVT-AGTFEIIERAERALELGANMLMVD 227 (366)
T ss_pred HHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3457778999999999864333332 3446677777777754332233345666 76553 4566678899999999
Q ss_pred cCCCchhHHHHhhh
Q 020229 267 NSRSDEKLLSVFRE 280 (329)
Q Consensus 267 ~~~~~~~~l~~l~~ 280 (329)
+...+...++.+.+
T Consensus 228 ~~~~G~~~l~~l~~ 241 (366)
T cd08148 228 VLTAGFSALQALAE 241 (366)
T ss_pred ccccchHHHHHHHH
Confidence 87766666666653
No 174
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=53.29 E-value=2.4e+02 Score=28.14 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCCeEEecC-Cc-cCCC---CCh----HHHHHHHHHHHHHHcCCCCCceeEEeecccChH-------
Q 020229 186 PIYKEVISELKAAGASWIQFDE-PL-LVMD---LDS----HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN------- 249 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDE-P~-l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~------- 249 (329)
+.+.+|+++|+++||+...|-- |. +++. ... ---+++.+.+.-+....| ....||+=--|+.
T Consensus 218 e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP--~l~tLHiDNaNP~tIa~yp~ 295 (560)
T COG1031 218 EDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAP--NLKTLHIDNANPATIARYPE 295 (560)
T ss_pred HHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHHHHHHHhhCC--CCeeeeecCCCchhhhcChH
Confidence 3566789999999999887763 22 3331 101 011333444444444444 2346898755542
Q ss_pred ---HHHHHHHh--C--CCcEEEEEcC
Q 020229 250 ---DIIHSIID--M--DADVITIENS 268 (329)
Q Consensus 250 ---~i~~~l~~--~--~~d~~~lE~~ 268 (329)
+++..|.+ + |+-+|.+|.+
T Consensus 296 eSr~i~K~ivky~TpGnVaAfGlEsa 321 (560)
T COG1031 296 ESREIAKVIVKYGTPGNVAAFGLESA 321 (560)
T ss_pred HHHHHHHHHHhhCCCCceeeeecccc
Confidence 46666644 3 4455556654
No 175
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=52.89 E-value=82 Score=28.84 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=35.9
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~l 265 (329)
+++++..++|+++|++|-.. ++.++...+. +... .++ -.. |+. .+-+..+.++++|++++
T Consensus 189 eea~~A~~~gaDyI~ld~~~------~e~lk~~v~~---~~~~----ipi--~As-GGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDNMK------PEEIKEAVQL---LKGR----VLL--EAS-GGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred HHHHHHHHcCCCEEEECCCC------HHHHHHHHHH---hcCC----CcE--EEE-CCCCHHHHHHHHHcCCCEEEe
Confidence 34555568999999998533 3444333222 2111 221 222 544 35678888999999998
No 176
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=52.62 E-value=85 Score=28.76 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~lE~ 267 (329)
+++...++|+++|++|-- +.+.+++..+. +.+. .++ .+-|+. .+-++.+.++++|++++=.
T Consensus 194 ea~~A~~~gaDyI~ld~~------~~e~l~~~~~~---~~~~----ipi---~AiGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 194 QLKEALEAGADIIMLDNM------SPEELREAVAL---LKGR----VLL---EASGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred HHHHHHHcCCCEEEECCc------CHHHHHHHHHH---cCCC----CcE---EEECCCCHHHHHHHHHcCCCEEEEEe
Confidence 445556799999999832 34444332222 2111 221 222554 3567888899999999764
No 177
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=52.05 E-value=1e+02 Score=27.23 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=34.9
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCC-CceeEEeecccChHHHHHHH--HhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSI--IDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~lE~ 267 (329)
.++.+.++|++.|.|-|..-. +.+..+..+...+. +.+++ ...++.|.=+|-- +...+ .+.+++.+..=.
T Consensus 142 ~~~~~~~~g~~~i~l~Dt~G~--~~P~~v~~lv~~~~---~~~~~~~l~~H~Hnd~Gla--~An~laA~~aGa~~id~t~ 214 (237)
T PF00682_consen 142 LAEALAEAGADIIYLADTVGI--MTPEDVAELVRALR---EALPDIPLGFHAHNDLGLA--VANALAALEAGADRIDGTL 214 (237)
T ss_dssp HHHHHHHHT-SEEEEEETTS---S-HHHHHHHHHHHH---HHSTTSEEEEEEBBTTS-H--HHHHHHHHHTT-SEEEEBG
T ss_pred HHHHHHHcCCeEEEeeCccCC--cCHHHHHHHHHHHH---HhccCCeEEEEecCCccch--hHHHHHHHHcCCCEEEccC
Confidence 345566679999999887644 34555544444443 33432 2334444444433 33333 567888864443
No 178
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=51.65 E-value=2e+02 Score=28.71 Aligned_cols=87 Identities=9% Similarity=0.134 Sum_probs=56.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccC-hH---HHHHHHHhCCCcEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSN-FN---DIIHSIIDMDADVITI 265 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn-~~---~i~~~l~~~~~d~~~l 265 (329)
+.++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.......++++ |. .. +..+.+.+.+.+++-+
T Consensus 182 ~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT-~~~~~em~~ra~~~~e~G~~~~mv 260 (468)
T PRK04208 182 VYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVT-APTMEEMYKRAEFAKELGSPIVMI 260 (468)
T ss_pred HHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCCHHHHHHHHHHHHHhCCCEEEE
Confidence 3456678999999999864433332 3346667777777654322233455666 66 54 3466667889999999
Q ss_pred EcCCCchhHHHHhh
Q 020229 266 ENSRSDEKLLSVFR 279 (329)
Q Consensus 266 E~~~~~~~~l~~l~ 279 (329)
++...+...++.+.
T Consensus 261 ~~~~~G~~~l~~l~ 274 (468)
T PRK04208 261 DVVTAGWTALQSLR 274 (468)
T ss_pred eccccccHHHHHHH
Confidence 98776665555555
No 179
>PRK14847 hypothetical protein; Provisional
Probab=51.51 E-value=2.1e+02 Score=27.17 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=64.8
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcC--CCCCceeEEeecccChH---HHHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCG--VQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~lH~C~Gn~~---~i~~~l~~~~~d~~~lE 266 (329)
++.|.++|++.|.+==|+.+ +.+.+. ++++.+. ++.+.. +.-.|+...+ ..++...+++.+.+++-
T Consensus 60 A~~L~~lGVd~IEvG~Pa~s----~~e~e~----ir~I~~~~~~~~~~~-i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~ 130 (333)
T PRK14847 60 FEQLVAVGLKEIEVAFPSAS----QTDFDF----VRKLIDERRIPDDVT-IEALTQSRPDLIARTFEALAGSPRAIVHLY 130 (333)
T ss_pred HHHHHHcCCCEEEeeCCCCC----HHHHHH----HHHHHHhCCCCCCcE-EEEEecCcHHHHHHHHHHhCCCCCCEEEEE
Confidence 45678899999998878744 344433 3333332 212232 2334444443 34555566677778888
Q ss_pred cCCCc-----------hhHHHHhhhcc----cC-----CC--eeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 020229 267 NSRSD-----------EKLLSVFREGV----KY-----GA--GIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI 321 (329)
Q Consensus 267 ~~~~~-----------~~~l~~l~~~~----~~-----~~--~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~ 321 (329)
...+. .+.++.+.+-+ .. +. .+-+|.=| ..--+++-+.+-++.+.+..++.+
T Consensus 131 ~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED---asRad~dfL~~~~~~a~~~~ga~r 204 (333)
T PRK14847 131 NPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET---FSLAELDFAREVCDAVSAIWGPTP 204 (333)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec---CCCCCHHHHHHHHHHHHHHhCCCc
Confidence 66432 23333222200 01 11 34444444 334888899888888888888544
No 180
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=51.49 E-value=38 Score=33.77 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=24.4
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHH
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRIT 229 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~ 229 (329)
.+|+|+ .|++++-+|||+.. +++.+++.+...+..+
T Consensus 151 IlKaLy-r~a~iLILDEPTaV--LTP~E~~~lf~~l~~l 186 (501)
T COG3845 151 ILKALY-RGARLLILDEPTAV--LTPQEADELFEILRRL 186 (501)
T ss_pred HHHHHh-cCCCEEEEcCCccc--CCHHHHHHHHHHHHHH
Confidence 445666 48999999999754 5676666655554443
No 181
>PRK12999 pyruvate carboxylase; Reviewed
Probab=51.45 E-value=93 Score=34.76 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=44.5
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEc
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~ 267 (329)
|.+.++.+.++||+.|.|-|.+-. +.+.....++.++.... +++ ..+|.|.=.|....-.-.-.+.++|.++.=.
T Consensus 693 ~~~~a~~l~~~Ga~~i~ikDt~G~--l~P~~~~~lv~~lk~~~-~ip--i~~H~Hnt~Gla~an~laA~~aGad~vD~av 767 (1146)
T PRK12999 693 YVDLAKELEKAGAHILAIKDMAGL--LKPAAAYELVSALKEEV-DLP--IHLHTHDTSGNGLATYLAAAEAGVDIVDVAV 767 (1146)
T ss_pred HHHHHHHHHHcCCCEEEECCccCC--CCHHHHHHHHHHHHHHc-CCe--EEEEeCCCCchHHHHHHHHHHhCCCEEEecc
Confidence 444566678899999999988733 34555555555555444 332 4455555556543222222467777776664
Q ss_pred C
Q 020229 268 S 268 (329)
Q Consensus 268 ~ 268 (329)
.
T Consensus 768 ~ 768 (1146)
T PRK12999 768 A 768 (1146)
T ss_pred h
Confidence 3
No 182
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=51.04 E-value=1.2e+02 Score=27.76 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEe--ecccChHHHHHHH--HhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTH--MCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH--~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
+.++.+.++|++.|.|-|..-. +.+..+..++..+. +..+ +.++++| .=+|-- +...+ .+.+++.+..
T Consensus 153 ~~~~~~~~~Ga~~i~l~DT~G~--~~P~~v~~lv~~l~---~~~~-~~~i~~H~Hnd~GlA--~AN~laA~~aGa~~id~ 224 (274)
T cd07938 153 EVAERLLDLGCDEISLGDTIGV--ATPAQVRRLLEAVL---ERFP-DEKLALHFHDTRGQA--LANILAALEAGVRRFDS 224 (274)
T ss_pred HHHHHHHHcCCCEEEECCCCCc--cCHHHHHHHHHHHH---HHCC-CCeEEEEECCCCChH--HHHHHHHHHhCCCEEEE
Confidence 3345566789999999887744 34555544444333 3343 2444554 444433 33344 4667776554
Q ss_pred E
Q 020229 266 E 266 (329)
Q Consensus 266 E 266 (329)
=
T Consensus 225 t 225 (274)
T cd07938 225 S 225 (274)
T ss_pred e
Confidence 3
No 183
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=50.48 E-value=1.4e+02 Score=26.92 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
+.++.+.++|++.|.|-|+.-. +.+..+..++..+.+... + ..-++.|.=+|-.. ...+ .+.+++.+.-
T Consensus 143 ~~~~~~~~~G~~~i~l~DT~G~--~~P~~v~~lv~~l~~~~~-~--~l~~H~Hn~~Gla~--An~laAi~aG~~~vd~ 213 (259)
T cd07939 143 EFAEVAQEAGADRLRFADTVGI--LDPFTTYELIRRLRAATD-L--PLEFHAHNDLGLAT--ANTLAAVRAGATHVSV 213 (259)
T ss_pred HHHHHHHHCCCCEEEeCCCCCC--CCHHHHHHHHHHHHHhcC-C--eEEEEecCCCChHH--HHHHHHHHhCCCEEEE
Confidence 3345566789999999988744 345555444444433322 2 24445555555322 2222 4677776543
No 184
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=50.20 E-value=64 Score=27.21 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecCC---ccCCCCChHHHHHHHHHHHHHHcCC-CCCceeEEeecccCh-------H
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDEP---LLVMDLDSHKLHAFIHSFRITNCGV-QDTTQIHTHMCYSNF-------N 249 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDEP---~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~lH~C~Gn~-------~ 249 (329)
-+...+.+.+.++...+.|++++.+--+ ........+..+.+.+.++.+.+-. +.++.+.++.+.+.. .
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~ 145 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVE 145 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHH
Confidence 4555566777778888889999988844 2121122344455666666655432 124688888886543 4
Q ss_pred HHHHHHHhCCC--cEEEEEcC
Q 020229 250 DIIHSIIDMDA--DVITIENS 268 (329)
Q Consensus 250 ~i~~~l~~~~~--d~~~lE~~ 268 (329)
.+...+.+++- =++.+|..
T Consensus 146 ~~~~~l~~~~~~~~~i~~D~~ 166 (213)
T PF01261_consen 146 EIYRLLEEVDSPNVGICFDTG 166 (213)
T ss_dssp HHHHHHHHHTTTTEEEEEEHH
T ss_pred HHHHHHhhcCCCcceEEEehH
Confidence 56666666655 45566654
No 185
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=50.00 E-value=1.7e+02 Score=26.70 Aligned_cols=115 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCC-----ChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH------HHHHHHHh
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDL-----DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN------DIIHSIID 257 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~------~i~~~l~~ 257 (329)
.+.++.|.++|++.+.+.=- ..... ....++...++++.+.+.- ..+.+|+..|--+ ..+..+.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~G---i~v~~~~i~Gl~et~~d~~~~~~~l~~ 198 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAG---LKVCSGGIFGLGETVEDRIGLALALAN 198 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcC---CEEEEeEEEeCCCCHHHHHHHHHHHHh
Q ss_pred CCCcEEEEEcCC-CchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 258 MDADVITIENSR-SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 258 ~~~d~~~lE~~~-~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
++++.+.+-... .+..++...+ ..+.++..+.+..+...+|...+-++..
T Consensus 199 l~~~~i~l~~l~p~~gT~l~~~~--------------------~~s~~~~~~~ia~~r~~lp~~~i~~~~~ 249 (296)
T TIGR00433 199 LPPESVPINFLVKIKGTPLADNK--------------------ELSADDALKTIALARIIMPKAEIRLAGG 249 (296)
T ss_pred CCCCEEEeeeeEEcCCCccCCCC--------------------CCCHHHHHHHHHHHHHHCCcceEEEeCC
No 186
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=49.78 E-value=1.4e+02 Score=28.39 Aligned_cols=89 Identities=9% Similarity=0.081 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCC-------------hHH-HHHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLD-------------SHK-LHAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ ++.+.+.+.+..+.+.++|++.|+|.--- +.-.++ .+. .+-..+.+..+.+.+ +.+
T Consensus 133 t~ee-I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~--~~~ 209 (337)
T PRK13523 133 TKEQ-IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW--DGP 209 (337)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CCC
Confidence 4444 47788888888899999999999998431 111111 111 122345555555444 246
Q ss_pred eEEeecc------cC-hH---HHHHHHHhCCCcEEEEEc
Q 020229 239 IHTHMCY------SN-FN---DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 239 i~lH~C~------Gn-~~---~i~~~l~~~~~d~~~lE~ 267 (329)
+++-+.- |. .+ .++..|.+.++|.+++=.
T Consensus 210 v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 210 LFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred eEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 6666662 22 12 466777788999998843
No 187
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=49.50 E-value=1.7e+02 Score=27.95 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCCh-------------HHH-HHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLDS-------------HKL-HAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ ++.+.+.+.+..+...+||+|.|+|.--- +.-.+|+ +.. +-..+.+..+.+.++.+ .
T Consensus 150 t~~e-I~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~-~ 227 (362)
T PRK10605 150 ELEE-IPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD-R 227 (362)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC-e
Confidence 4344 47788888888899999999999998432 1111221 222 23456666666666544 4
Q ss_pred eEEeecc---------cCh-----HHHHHHHHhCCCcEEEEEc
Q 020229 239 IHTHMCY---------SNF-----NDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 239 i~lH~C~---------Gn~-----~~i~~~l~~~~~d~~~lE~ 267 (329)
+++.++- |.. ..++..|.+.++|.+++=.
T Consensus 228 igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 228 IGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred EEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 7776641 221 2345666677899998753
No 188
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=49.49 E-value=2.1e+02 Score=26.09 Aligned_cols=121 Identities=11% Similarity=0.000 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHCCCCeEEecCCc-cCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPL-LVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
++++.++.+.++|++-|.+--.+ =...++.++...+.+...... +++.++..|++..++.+ ......++++|+
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~---~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~ 98 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAV---NGRVPVIAGTGSNNTAEAIELTKRAEKAGADA 98 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHh---CCCCcEEeccCCccHHHHHHHHHHHHHcCCCE
Confidence 46666778889999977766332 112355566544444433333 23467888998445543 455557789998
Q ss_pred EEEEcC---C-CchhHHHHhhhccc-CCCeeeeeeecCCCCCCCCHHHHHHHH
Q 020229 263 ITIENS---R-SDEKLLSVFREGVK-YGAGIGPGVYDIHSPRIPSTEEIADRI 310 (329)
Q Consensus 263 ~~lE~~---~-~~~~~l~~l~~~~~-~~~~i~~Gvvd~~~~~~e~~e~i~~ri 310 (329)
+.+=.. . +..+..+.+.+... .+..+++=.++..+...=+++.+++..
T Consensus 99 v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 99 ALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 887643 2 23455555543111 244555555554444444566555443
No 189
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=49.42 E-value=1.8e+02 Score=25.43 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhC--CCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCC
Q 020229 220 HAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM--DADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHS 297 (329)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~--~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~ 297 (329)
+.+...++.+.+ . +.++.+|+- +....+++.+.+. ...++.--+........+.++ .|-.+.++....
T Consensus 108 ~~~~~~~~~a~~-~--~~pv~iH~~-~~~~~~~~~l~~~~~~~~~i~H~~~~~~~~~~~~~~----~g~~~~~~~~~~-- 177 (252)
T TIGR00010 108 EVFRAQLQLAEE-L--NLPVIIHAR-DAEEDVLDILREEKPKVGGVLHCFTGDAELAKKLLD----LGFYISISGIVT-- 177 (252)
T ss_pred HHHHHHHHHHHH-h--CCCeEEEec-CccHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHH----CCCeEeeceeEe--
Confidence 344555554443 2 367899976 6666678888766 333343333222233333333 244444443211
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEeCCCC
Q 020229 298 PRIPSTEEIADRINKMLAVLETNILWVNPDL 328 (329)
Q Consensus 298 ~~~e~~e~i~~ri~~a~~~v~~~~l~ispdC 328 (329)
..+. +.++++++.+|++|+.+++|.
T Consensus 178 --~~~~----~~~~~~i~~~~~dril~~TD~ 202 (252)
T TIGR00010 178 --FKNA----KSLREVVRKIPLERLLVETDS 202 (252)
T ss_pred --cCCc----HHHHHHHHhCCHHHeEecccC
Confidence 1222 345555667899999999984
No 190
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=49.39 E-value=1.3e+02 Score=28.44 Aligned_cols=89 Identities=8% Similarity=0.120 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCC--c-----cCCCC---------ChHH-HHHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEP--L-----LVMDL---------DSHK-LHAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP--~-----l~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ +..+.+.|.+.++...++|++.|+|.-- . |+... +.+. .+.+.+.++.+.+.+..+..
T Consensus 132 t~~e-I~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~ 210 (343)
T cd04734 132 EEED-IEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFI 210 (343)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCe
Confidence 4444 4677778888888889999999999952 1 11101 1111 13345666666666655566
Q ss_pred eEEeecccC-------h---HHHHHHHHhCC-CcEEEE
Q 020229 239 IHTHMCYSN-------F---NDIIHSIIDMD-ADVITI 265 (329)
Q Consensus 239 i~lH~C~Gn-------~---~~i~~~l~~~~-~d~~~l 265 (329)
+.+=+.+-+ . -.++..|.+.+ +|.+++
T Consensus 211 v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 211 VGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred EEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 666666322 1 14667777787 899988
No 191
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.26 E-value=1.5e+02 Score=28.47 Aligned_cols=90 Identities=7% Similarity=0.124 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCCh-------------HH-HHHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLDS-------------HK-LHAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ ++.+.+.+.+..+...++|++.|+|.--- +...+++ +. .+-..+.+..+.+.+.++.+
T Consensus 135 t~~e-I~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~ 213 (361)
T cd04747 135 TEAD-IDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFP 213 (361)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCe
Confidence 4444 47788888888888999999999999433 1111211 11 13345666666666655667
Q ss_pred eEEeecc----------cCh-H---HHHHHHHhCCCcEEEEE
Q 020229 239 IHTHMCY----------SNF-N---DIIHSIIDMDADVITIE 266 (329)
Q Consensus 239 i~lH~C~----------Gn~-~---~i~~~l~~~~~d~~~lE 266 (329)
+++-+.- |.. . .++..|.+.++|.+++=
T Consensus 214 v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs 255 (361)
T cd04747 214 IILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCS 255 (361)
T ss_pred EEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 7776651 111 1 35666778899998773
No 192
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=49.15 E-value=2.5e+02 Score=26.89 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=72.1
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+.++.|.++|++.|.+-=|..+ +.+.+. ++.+.+..+ +.. ....|+.+..+ ++...+++++.+.+=.+.
T Consensus 27 ~ia~~L~~~Gv~~IEvG~p~~~----~~~~e~----i~~i~~~~~-~~~-i~~~~r~~~~d-i~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 27 AIARALDEAGVDELEVGIPAMG----EEERAV----IRAIVALGL-PAR-LMAWCRARDAD-IEAAARCGVDAVHISIPV 95 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----HHHHHH----HHHHHHcCC-CcE-EEEEcCCCHHH-HHHHHcCCcCEEEEEEcc
Confidence 3456788899999999766533 333322 233333222 233 34556666654 567778899988887664
Q ss_pred Cc-----------hhHHHHhhh----cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 270 SD-----------EKLLSVFRE----GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 270 ~~-----------~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
+. .+.++.+.+ -...+..+.++.-|... -+++.+.+.++++.+ .|.+++.+.--.|
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r---~~~~~l~~~~~~~~~-~Ga~~i~l~DT~G 166 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASR---ADPDFLVELAEVAAE-AGADRFRFADTVG 166 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCC---CCHHHHHHHHHHHHH-cCcCEEEEcccCC
Confidence 32 122222211 11235667777666422 357888887777654 5788887765443
No 193
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=48.93 E-value=2.3e+02 Score=26.58 Aligned_cols=89 Identities=8% Similarity=0.181 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCC-------------hH-HHHHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLD-------------SH-KLHAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ +..+.+.+.+.++.+.++|++.|+|.--- +...++ .+ ..+...+.+..+.+.+.++.+
T Consensus 145 t~~e-I~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~ 223 (336)
T cd02932 145 TREE-IAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKP 223 (336)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 4444 46788888888888999999999998411 110111 11 123345666666666655667
Q ss_pred eEEeecc------cC-hH---HHHHHHHhCCCcEEEE
Q 020229 239 IHTHMCY------SN-FN---DIIHSIIDMDADVITI 265 (329)
Q Consensus 239 i~lH~C~------Gn-~~---~i~~~l~~~~~d~~~l 265 (329)
+++-+.. |. .+ .++..|.+.++|.+++
T Consensus 224 v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 224 LFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred EEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 7776551 21 22 4666777788998875
No 194
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=48.56 E-value=2e+02 Score=25.61 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=68.8
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.+.++.|.++|+++|.+==|.-.... +. .+...+.++.+.+..+ +.++.. +|+.+ ...+..+.+++++.+.+=..
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~-p~-~~~~~~~i~~l~~~~~-~~~~~~-l~~~~-~~~i~~a~~~g~~~i~i~~~ 96 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAV-PQ-MEDDWEVLRAIRKLVP-NVKLQA-LVRNR-EKGIERALEAGVDEVRIFDS 96 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCcccc-cc-CCCHHHHHHHHHhccC-CcEEEE-EccCc-hhhHHHHHhCCcCEEEEEEe
Confidence 34466788899999998866532100 00 0011223333443332 234322 33322 45677778888888877655
Q ss_pred CCc---------------hhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 269 RSD---------------EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 269 ~~~---------------~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
.+. ...++.++.....+..+.+.+.++... ..+++++.+.++++.+ .|.+.+++.
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~l~ 166 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEISLK 166 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEEec
Confidence 331 122222221112356666666555433 5677777777777754 466666664
No 195
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=48.42 E-value=2.1e+02 Score=28.05 Aligned_cols=88 Identities=10% Similarity=0.150 Sum_probs=57.0
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~~lE 266 (329)
..++...|+|+|-=||....-...+ +-+.++.++++++.+.-.+...-.++++ |.... ..+...+.+.+++-++
T Consensus 153 ~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~a~e~G~~~~mv~ 231 (412)
T cd08213 153 AYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANIT-APVREMERRAELVADLGGKYVMID 231 (412)
T ss_pred HHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEec-CCHHHHHHHHHHHHHhCCCeEEee
Confidence 4457778999999999864333332 3346667777777654322233455666 66653 4566678899999999
Q ss_pred cCCCchhHHHHhhh
Q 020229 267 NSRSDEKLLSVFRE 280 (329)
Q Consensus 267 ~~~~~~~~l~~l~~ 280 (329)
....+...++.+.+
T Consensus 232 ~~~~G~~~l~~l~~ 245 (412)
T cd08213 232 VVVAGWSALQYLRD 245 (412)
T ss_pred ccccChHHHHHHHH
Confidence 87766655555553
No 196
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.26 E-value=1.5e+02 Score=27.10 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEEEcC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITIENS 268 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~lE~~ 268 (329)
.++.+.++|++.|.|-|+.-. +.+..+..++..+.+ .++....+|.|.=+|-.. ...+ .+.+++.++.=..
T Consensus 154 ~~~~~~~~Ga~~i~l~DT~G~--~~P~~v~~lv~~l~~---~~~~~l~~H~Hnd~GlA~--aN~laA~~aGa~~vd~sv~ 226 (275)
T cd07937 154 LAKELEDMGADSICIKDMAGL--LTPYAAYELVKALKK---EVGLPIHLHTHDTSGLAV--ATYLAAAEAGVDIVDTAIS 226 (275)
T ss_pred HHHHHHHcCCCEEEEcCCCCC--CCHHHHHHHHHHHHH---hCCCeEEEEecCCCChHH--HHHHHHHHhCCCEEEEecc
Confidence 345577889999999988744 335555444444433 332124445555555332 2222 3668887665543
No 197
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=48.23 E-value=1.3e+02 Score=28.39 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCC--CeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEE
Q 020229 189 KEVISELKAAGA--SWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 189 ~~~i~~l~~aG~--~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
.+++.+|.++|+ ++||||-.- -.... +.+.+..+.+..| +.+++.=.| ++.+ -...+.++++|++-+=
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~----gh~~~---~~e~I~~ir~~~p-~~~vi~g~V-~t~e-~a~~l~~aGad~i~vg 168 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAH----GHSDS---VINMIQHIKKHLP-ETFVIAGNV-GTPE-AVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCC----CchHH---HHHHHHHHHhhCC-CCeEEEEec-CCHH-HHHHHHHcCcCEEEEC
Confidence 466788999965 999999333 11122 2333455555554 245544345 4444 4567778888886543
No 198
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.16 E-value=88 Score=28.86 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~lE~ 267 (329)
+++...++|++||++|. ++.+.++...+. ++ .++.+-.. |+. .+-++.+.++++|++++=+
T Consensus 200 ea~~A~~~gaDyI~lD~------~~~e~l~~~~~~-------~~--~~i~i~Ai-GGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 200 QVREAVAAGADIIMFDN------RTPDEIREFVKL-------VP--SAIVTEAS-GGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHHHHh-------cC--CCceEEEE-CCCCHHHHHHHHHcCCCEEEECh
Confidence 44555679999999972 445555333322 11 11222223 444 4678888999999999864
No 199
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=47.86 E-value=1.6e+02 Score=28.24 Aligned_cols=91 Identities=10% Similarity=0.158 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCc---cCCCCC-------------hHHH-HHHHHHHHHHHcCCCCCce
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGASWIQFDEPL---LVMDLD-------------SHKL-HAFIHSFRITNCGVQDTTQ 238 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~---l~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~ 238 (329)
+.++ ++++.+.|.+..+...+||.|.|+|.--- +.-.++ -+.. +-..+.++.+.+.++++.+
T Consensus 140 t~~e-I~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~ 218 (363)
T COG1902 140 TEEE-IEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFP 218 (363)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCce
Confidence 4444 47888888888888999999999998421 111121 1212 3346777777777776667
Q ss_pred eEEeecccCh-----------HHHHHHHHhCC-CcEEEEEc
Q 020229 239 IHTHMCYSNF-----------NDIIHSIIDMD-ADVITIEN 267 (329)
Q Consensus 239 i~lH~C~Gn~-----------~~i~~~l~~~~-~d~~~lE~ 267 (329)
|++-++-..+ ..+++.|.+.+ +|.+++=.
T Consensus 219 vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~ 259 (363)
T COG1902 219 VGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSE 259 (363)
T ss_pred EEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeec
Confidence 8888884333 25788888888 79888764
No 200
>PRK10425 DNase TatD; Provisional
Probab=47.59 E-value=2.2e+02 Score=25.83 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhC--CC-cEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCC
Q 020229 220 HAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM--DA-DVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIH 296 (329)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~--~~-d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~ 296 (329)
+.|..-++.+.+ . +.++++|+- +...++++.|.+. +. .++.-=|..+...+.+.+. .|-.+++|-.-+.
T Consensus 108 ~vF~~ql~lA~~-~--~~Pv~iH~r-~a~~~~l~iL~~~~~~~~~~i~H~fsG~~~~~~~~l~----~G~~~si~g~i~~ 179 (258)
T PRK10425 108 RAFVAQLAIAAE-L--NMPVFMHCR-DAHERFMALLEPWLDKLPGAVLHCFTGTREEMQACLA----RGLYIGITGWVCD 179 (258)
T ss_pred HHHHHHHHHHHH-h--CCCeEEEEe-CchHHHHHHHHHhccCCCCeEEEecCCCHHHHHHHHH----CCCEEEECceeec
Confidence 444444444443 3 357899997 8888888888763 22 3443223334444444444 2555665532111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCceEeCCCC
Q 020229 297 SPRIPSTEEIADRINKMLAVLETNILWVNPDL 328 (329)
Q Consensus 297 ~~~~e~~e~i~~ri~~a~~~v~~~~l~ispdC 328 (329)
. .+ ...++++++.+|.+++.+-+|+
T Consensus 180 ~---~~----~~~~~~~~~~ipldrlLlETDa 204 (258)
T PRK10425 180 E---RR----GLELRELLPLIPAERLLLETDA 204 (258)
T ss_pred c---cc----cHHHHHHHHhCChHHEEEeccC
Confidence 1 11 1366778899999999998775
No 201
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=47.52 E-value=1.7e+02 Score=26.78 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=37.4
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHH--HhCCCcEEEEEcC
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITIENS 268 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~lE~~ 268 (329)
++++.++|++.|.|-|..-. ..+..+..+...+.+....+ ...+|.|.=+|-. +...+ .+.+++.+.-=..
T Consensus 157 ~~~~~~~g~~~i~l~DT~G~--~~P~~v~~lv~~l~~~~~~~--~l~~H~Hnd~Gla--~An~laA~~aGa~~id~s~~ 229 (273)
T cd07941 157 LKAAAEAGADWLVLCDTNGG--TLPHEIAEIVKEVRERLPGV--PLGIHAHNDSGLA--VANSLAAVEAGATQVQGTIN 229 (273)
T ss_pred HHHHHhCCCCEEEEecCCCC--CCHHHHHHHHHHHHHhCCCC--eeEEEecCCCCcH--HHHHHHHHHcCCCEEEEecc
Confidence 44556789999888887743 34555544444443332212 1344445445532 23333 3567886654443
No 202
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.51 E-value=1.4e+02 Score=27.44 Aligned_cols=119 Identities=7% Similarity=0.009 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHCC-CCeEEecCCcc-CCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCc
Q 020229 187 IYKEVISELKAAG-ASWIQFDEPLL-VMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDAD 261 (329)
Q Consensus 187 ~~~~~i~~l~~aG-~~~IQiDEP~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d 261 (329)
++++.++.+.+.| ++-|.+---+- ...++.++...+.+..-+... +..++..|+...++.+ ......++++|
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~~~t~~~i~la~~a~~~Gad 98 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGSVNLKEAVELGKYATELGYD 98 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 5666778888999 99777763221 112455665444443333322 2367778876455554 34444678999
Q ss_pred EEEEEcC---C-CchhHHHHhhhcccC--CCeeeeeeecCCCCCCCCHHHHHH
Q 020229 262 VITIENS---R-SDEKLLSVFREGVKY--GAGIGPGVYDIHSPRIPSTEEIAD 308 (329)
Q Consensus 262 ~~~lE~~---~-~~~~~l~~l~~~~~~--~~~i~~Gvvd~~~~~~e~~e~i~~ 308 (329)
++.+=.. . +..++...+.+.... +..+++=+++..+...=++|.+.+
T Consensus 99 ~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~ 151 (290)
T TIGR00683 99 CLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGE 151 (290)
T ss_pred EEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHH
Confidence 9998532 1 234555555531111 223333344433433344554443
No 203
>PRK03739 2-isopropylmalate synthase; Validated
Probab=47.34 E-value=2e+02 Score=29.36 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=62.3
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCC-CCCce--eEEeecccChHHHHHHHHhCCCcEEEEEc
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGV-QDTTQ--IHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~ 267 (329)
.++.|.++|++.|.+==|..+ +.+.+.+..... .++ +.+.. ...+...|+.+..++.+.+++...+++=.
T Consensus 57 ia~~L~~~GV~~IE~GfP~~s----~~e~e~v~~i~~---~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~~~~~v~i~~ 129 (552)
T PRK03739 57 MFDLLVKIGFKEIEVGFPSAS----QTDFDFVRELIE---EGLIPDDVTIQVLTQAREHLIERTFEALEGAKRAIVHLYN 129 (552)
T ss_pred HHHHHHHcCCCEEEEECCCcC----hHHHHHHHHHHH---hcCCCCCCEEEEEeccchhHHHHHHHHhcCCCCCEEEEEE
Confidence 356688999999988756643 344333222222 122 21222 23344445566666676677766777775
Q ss_pred CCC-----------chhHHHHhhhcc----cCCCee---eeee-ecCCCCCCCCHHHHHHHHHHHHHhcCC
Q 020229 268 SRS-----------DEKLLSVFREGV----KYGAGI---GPGV-YDIHSPRIPSTEEIADRINKMLAVLET 319 (329)
Q Consensus 268 ~~~-----------~~~~l~~l~~~~----~~~~~i---~~Gv-vd~~~~~~e~~e~i~~ri~~a~~~v~~ 319 (329)
+.+ ..+.++.+.+.+ ..++.. .+++ ++.-...--+++-+.+-++.+.+.-++
T Consensus 130 ~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~~a 200 (552)
T PRK03739 130 STSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVWQP 200 (552)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhhcC
Confidence 543 223333333211 011110 1333 233223336788888888888766665
No 204
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.34 E-value=2.3e+02 Score=25.95 Aligned_cols=120 Identities=11% Similarity=-0.011 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHCCCCeEEecCCc-cCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPL-LVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
.+++.++.+.+.|++-|.+--.+ =...++.++..++.+...+.. .+..++..|++.-++.+ ......++++|+
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~---~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ 96 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLV---NGRVPVIAGTGSNATEEAISLTKFAEDVGADG 96 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEeCCCccHHHHHHHHHHHHHcCCCE
Confidence 45666777888999977764222 111345555544444333333 23467889998555654 444556789999
Q ss_pred EEEEcC---C-CchhHHHHhhhccc-CCCeeeeeeecCCCCCCCCHHHHHHH
Q 020229 263 ITIENS---R-SDEKLLSVFREGVK-YGAGIGPGVYDIHSPRIPSTEEIADR 309 (329)
Q Consensus 263 ~~lE~~---~-~~~~~l~~l~~~~~-~~~~i~~Gvvd~~~~~~e~~e~i~~r 309 (329)
+.+=.. . +..++.+.+..... .+..+++=+++..+...=+++.+++.
T Consensus 97 v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L 148 (285)
T TIGR00674 97 FLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRL 148 (285)
T ss_pred EEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHH
Confidence 887633 2 23455555543111 13445555555444444456655544
No 205
>PLN02417 dihydrodipicolinate synthase
Probab=47.04 E-value=2.3e+02 Score=25.93 Aligned_cols=118 Identities=12% Similarity=-0.004 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccCC-CCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHH---HHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLVM-DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~---~~l~~~~~d~ 262 (329)
++++.++.+.+.|++-|.+--.+--. .++.++...+.+. +.+..++..++..|+..-++.+.+ ....++++|+
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~---~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gada 99 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGH---TVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHA 99 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHH---HHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCE
Confidence 46667788888999988776433111 2445555333332 333333346777887733555443 4446789999
Q ss_pred EEEEcC---C-CchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHH
Q 020229 263 ITIENS---R-SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIAD 308 (329)
Q Consensus 263 ~~lE~~---~-~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ 308 (329)
+.+--. . +..++.+.+....... .+++=+++..+...=+++.+++
T Consensus 100 v~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~l~~ 148 (280)
T PLN02417 100 ALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEVIFK 148 (280)
T ss_pred EEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHHHHH
Confidence 988732 2 2345666665422223 4444444444434445665543
No 206
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=46.88 E-value=2.1e+02 Score=28.21 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=58.3
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~~~lE 266 (329)
..++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+...-.+.++ |.... ..+...+++.+++-++
T Consensus 182 ~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~a~~~G~~~vmv~ 260 (424)
T cd08208 182 GYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANIT-DEVDRLMELHDVAVRNGANALLIN 260 (424)
T ss_pred HHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3456778999999999864433333 3346677788777754322222334555 66654 4566678999999999
Q ss_pred cCCCchhHHHHhhh
Q 020229 267 NSRSDEKLLSVFRE 280 (329)
Q Consensus 267 ~~~~~~~~l~~l~~ 280 (329)
+...++..++.+.+
T Consensus 261 ~~~~G~~al~~L~~ 274 (424)
T cd08208 261 AMPVGLSAVRMLRK 274 (424)
T ss_pred eecccHHHHHHHHh
Confidence 88777766766664
No 207
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=46.41 E-value=2.2e+02 Score=27.90 Aligned_cols=88 Identities=6% Similarity=0.075 Sum_probs=55.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccC-hH---HHHHHHHhCCCcEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSN-FN---DIIHSIIDMDADVITI 265 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn-~~---~i~~~l~~~~~d~~~l 265 (329)
..++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+...-.+.++ |. .. +..+.+.+.+.+++-+
T Consensus 154 ~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~~em~~ra~~~~~~G~~~~mv 232 (414)
T cd08206 154 VYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNIT-ADTPEEMIKRAEFAKELGSVIVMV 232 (414)
T ss_pred HHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccC-CCcHHHHHHHHHHHHHhCCcEEEE
Confidence 4457778999999999754433332 3346677777777654322122233344 55 44 3566667889999999
Q ss_pred EcCCCchhHHHHhhh
Q 020229 266 ENSRSDEKLLSVFRE 280 (329)
Q Consensus 266 E~~~~~~~~l~~l~~ 280 (329)
+....+...++.+.+
T Consensus 233 ~~~~~G~~~l~~l~~ 247 (414)
T cd08206 233 DGVTAGWTAIQSARR 247 (414)
T ss_pred eeecccHHHHHHHHH
Confidence 987766655655553
No 208
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=45.59 E-value=1.6e+02 Score=26.17 Aligned_cols=68 Identities=16% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHH--HhCCCcEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSI--IDMDADVIT 264 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l--~~~~~d~~~ 264 (329)
+.++.+.++|++.|.+-+..-. ++++.+..+. +.+.+..+ +.++++|.- -|.. .+...+ .+.+++.+.
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G~--~~P~~v~~li---~~l~~~~~-~~~~~~H~H-n~~gla~an~laA~~aG~~~id 220 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVGL--ATPEEVAELV---KALREALP-DVPLGLHTH-NTLGLAVANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHHHHcCCCEEEechhcCC--cCHHHHHHHH---HHHHHhCC-CCeEEEEeC-CCCChHHHHHHHHHHcCCCEEE
Confidence 3345567899999998877533 4566664443 33344443 256666664 3321 233333 356666653
No 209
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=45.25 E-value=1.7e+02 Score=26.94 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEe--ecccChHHHHHHH--HhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTH--MCYSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH--~C~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
+.++.+.++|++.|.|-|..-. ..+..+..+...+ .+..+ +.++++| .=+|-- +...+ .+.+++.+.-
T Consensus 151 ~~~~~~~~~G~~~i~l~DT~G~--~~P~~v~~l~~~l---~~~~~-~~~i~~H~Hnd~Gla--~AN~laA~~aGa~~vd~ 222 (280)
T cd07945 151 QLVDFLSDLPIKRIMLPDTLGI--LSPFETYTYISDM---VKRYP-NLHFDFHAHNDYDLA--VANVLAAVKAGIKGLHT 222 (280)
T ss_pred HHHHHHHHcCCCEEEecCCCCC--CCHHHHHHHHHHH---HhhCC-CCeEEEEeCCCCCHH--HHHHHHHHHhCCCEEEE
Confidence 3455577789999999887643 2355553333333 33343 2444554 444422 34444 4567776554
Q ss_pred Ec
Q 020229 266 EN 267 (329)
Q Consensus 266 E~ 267 (329)
=.
T Consensus 223 s~ 224 (280)
T cd07945 223 TV 224 (280)
T ss_pred ec
Confidence 44
No 210
>PTZ00413 lipoate synthase; Provisional
Probab=45.14 E-value=1.8e+02 Score=28.35 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh---HHHHHHHHhCCCcEEE--E
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF---NDIIHSIIDMDADVIT--I 265 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~---~~i~~~l~~~~~d~~~--l 265 (329)
.+++..+.|++++.|---. ..|+++...+.+.++++.+.+..+ .+.+.++.|++ .+.+..|.++++|.|+ +
T Consensus 185 vA~av~~~Gl~~~VVTSv~-RDDL~D~ga~~~a~~I~~Ir~~~p---~~~IevligDf~g~~e~l~~L~eAG~dvynHNL 260 (398)
T PTZ00413 185 VAKAVAEMGVDYIVMTMVD-RDDLPDGGASHVARCVELIKESNP---ELLLEALVGDFHGDLKSVEKLANSPLSVYAHNI 260 (398)
T ss_pred HHHHHHHcCCCEEEEEEEc-CCCCChhhHHHHHHHHHHHHccCC---CCeEEEcCCccccCHHHHHHHHhcCCCEEeccc
Confidence 3445677899877654111 123556677778888888875443 23567776766 3579999999999998 5
Q ss_pred EcC-------CC----chhHHHHhhhc--c-cCCC----eeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 020229 266 ENS-------RS----DEKLLSVFREG--V-KYGA----GIGPGVYDIHSPRIPSTEEIADRINKMLAVLETN 320 (329)
Q Consensus 266 E~~-------~~----~~~~l~~l~~~--~-~~~~----~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~ 320 (329)
|-+ +. -.+-++.+... . +.+- .+++|+ -||.|++.+.+..+. .++.+
T Consensus 261 ETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGL-------GET~eEvie~m~dLr-elGVD 325 (398)
T PTZ00413 261 ECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGL-------GETEEEVRQTLRDLR-TAGVS 325 (398)
T ss_pred ccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecC-------CCCHHHHHHHHHHHH-HcCCc
Confidence 543 11 12445555420 0 1111 233332 599999988888764 44443
No 211
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.90 E-value=1.7e+02 Score=26.63 Aligned_cols=70 Identities=7% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec--ccChHHHHHHH--HhCCCcEEEEE
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC--YSNFNDIIHSI--IDMDADVITIE 266 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C--~Gn~~~i~~~l--~~~~~d~~~lE 266 (329)
.++.+.++|++.|.|-|+.-. +.++.+..+...+.. .++++.++++|.= +|-. +...+ .+.+++.++-=
T Consensus 143 ~~~~~~~~g~~~i~l~DT~G~--~~P~~v~~lv~~l~~---~~~~~~~i~~H~Hn~~Gla--~AN~laA~~aGa~~vd~s 215 (266)
T cd07944 143 LLELVNEIKPDVFYIVDSFGS--MYPEDIKRIISLLRS---NLDKDIKLGFHAHNNLQLA--LANTLEAIELGVEIIDAT 215 (266)
T ss_pred HHHHHHhCCCCEEEEecCCCC--CCHHHHHHHHHHHHH---hcCCCceEEEEeCCCccHH--HHHHHHHHHcCCCEEEEe
Confidence 345566789999999988744 346666444444443 3332345566543 3322 23333 45777765544
Q ss_pred c
Q 020229 267 N 267 (329)
Q Consensus 267 ~ 267 (329)
.
T Consensus 216 ~ 216 (266)
T cd07944 216 V 216 (266)
T ss_pred c
Confidence 4
No 212
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=44.84 E-value=1.2e+02 Score=28.04 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHC-CCCeEEe----------cCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhC
Q 020229 190 EVISELKAA-GASWIQF----------DEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM 258 (329)
Q Consensus 190 ~~i~~l~~a-G~~~IQi----------DEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~ 258 (329)
++++++.+. |+++|-+ +.|.+. .+.+.++.+.++ .++++|-+-|-..+-+..+.+.
T Consensus 156 eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~-----------~~~L~~i~~~~~--iPlV~hG~SGI~~e~~~~~i~~ 222 (281)
T PRK06806 156 TEAKRFAEETDVDALAVAIGNAHGMYNGDPNLR-----------FDRLQEINDVVH--IPLVLHGGSGISPEDFKKCIQH 222 (281)
T ss_pred HHHHHHHHhhCCCEEEEccCCCCCCCCCCCccC-----------HHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHc
Q ss_pred CCcEEEE
Q 020229 259 DADVITI 265 (329)
Q Consensus 259 ~~d~~~l 265 (329)
+++.+.+
T Consensus 223 G~~kinv 229 (281)
T PRK06806 223 GIRKINV 229 (281)
T ss_pred CCcEEEE
No 213
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=44.82 E-value=1.2e+02 Score=27.81 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEE
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE 266 (329)
++....++|+++|++|-. .+..++.+.+. +.+..+ ..++ .+-|+.+ +-++.+.++++|++++=
T Consensus 195 ea~~A~~~gaD~I~ld~~------~p~~l~~~~~~---~~~~~~-~i~i---~AsGGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 195 EALAAAEAGADILQLDKF------SPEELAELVPK---LRSLAP-PVLL---AAAGGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred HHHHHHHcCCCEEEECCC------CHHHHHHHHHH---HhccCC-CceE---EEECCCCHHHHHHHHHcCCcEEEEC
Confidence 334445789999999932 23344333322 222111 1222 2225443 56788889999999654
No 214
>PRK09875 putative hydrolase; Provisional
Probab=44.56 E-value=2.6e+02 Score=25.92 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=46.5
Q ss_pred CceeEEeecccCh-HHHHHHHHhCCC--cEEEEEcCCC--ch-hHHHHhhhcccCCCeeeeeeecCCCCCCCCHH-HHHH
Q 020229 236 TTQIHTHMCYSNF-NDIIHSIIDMDA--DVITIENSRS--DE-KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTE-EIAD 308 (329)
Q Consensus 236 ~~~i~lH~C~Gn~-~~i~~~l~~~~~--d~~~lE~~~~--~~-~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e-~i~~ 308 (329)
+.+|.+|+.+|+- ..+++.+.+.++ +.+.+..... .. ...+.+. .| +.++.-..... ...|+ +..+
T Consensus 152 G~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~----~G--~~l~fD~~g~~-~~~pd~~r~~ 224 (292)
T PRK09875 152 GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMID----LG--AYVQFDTIGKN-SYYPDEKRIA 224 (292)
T ss_pred CCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHH----cC--CEEEeccCCCc-ccCCHHHHHH
Confidence 4678999998753 356888888777 7888887642 22 3333332 23 33443111111 11232 3333
Q ss_pred HHHHHHHhcC-CCceEeCCCC
Q 020229 309 RINKMLAVLE-TNILWVNPDL 328 (329)
Q Consensus 309 ri~~a~~~v~-~~~l~ispdC 328 (329)
.|+...+. | .+|+++|.|=
T Consensus 225 ~i~~L~~~-Gy~drilLS~D~ 244 (292)
T PRK09875 225 MLHALRDR-GLLNRVMLSMDI 244 (292)
T ss_pred HHHHHHhc-CCCCeEEEeCCC
Confidence 33333322 6 7999999884
No 215
>PRK03906 mannonate dehydratase; Provisional
Probab=44.48 E-value=99 Score=30.00 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=57.6
Q ss_pred Eeec---HHHHHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-eEEecCCccCC-----CC-ChHHHHHHH
Q 020229 154 VLIG---PVSYLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGAS-WIQFDEPLLVM-----DL-DSHKLHAFI 223 (329)
Q Consensus 154 ~i~G---P~tl~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~-~IQiDEP~l~~-----~~-~~~~~~~~~ 223 (329)
.+|| ++++..+...-..|.+ .+.+++.+.++..+++.+....+.|++ .|--|+|-... .+ +.++++.
T Consensus 180 ~lpG~~~~~~~~~~~~~~~~y~~-i~~e~lw~~l~~fL~~v~p~Aee~GV~LaihPdDPp~~~~Gl~riv~t~~d~~r-- 256 (385)
T PRK03906 180 GLPGWEEPYTLEQFRALLELYKD-IDEEKLRENLAYFLKAIIPVAEEVGVKMAIHPDDPPRPIFGLPRIVSTEEDLQR-- 256 (385)
T ss_pred eCCCCCccccHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCccccccccCceeCCHHHHHH--
Confidence 3677 5665432111122432 477889999999999999988999998 67777775331 11 2334422
Q ss_pred HHHHHHHcCCCCCceeEEeecccChH-----HHHHHHHhC
Q 020229 224 HSFRITNCGVQDTTQIHTHMCYSNFN-----DIIHSIIDM 258 (329)
Q Consensus 224 ~~~~~~~~~~~~~~~i~lH~C~Gn~~-----~i~~~l~~~ 258 (329)
+++.++ ...++++.|.|+.. ++.+.+...
T Consensus 257 -----ll~~v~-Sp~~gl~lDtG~l~~~~e~D~~~~I~~~ 290 (385)
T PRK03906 257 -----LLDAVD-SPANGLTLCTGSLGARPDNDLPAMIREF 290 (385)
T ss_pred -----HHHhcC-CCceeEEEchhhhhhcCCCCHHHHHHHh
Confidence 223332 23568999988872 344555444
No 216
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.36 E-value=1e+02 Score=28.24 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=34.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITI 265 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~l 265 (329)
+....++|+++|++|-. .++.++. +.+.+.+ .+ ..+ +-.- |+. .+-+..+.++++|++++
T Consensus 194 a~~A~~~gaD~I~ld~~------~~e~l~~---~v~~i~~-~~-~i~--i~as-GGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 194 AEEALEAGADIIMLDNM------SPEELKE---AVKLLKG-LP-RVL--LEAS-GGITLENIRAYAETGVDVIST 254 (269)
T ss_pred HHHHHHcCCCEEEECCC------CHHHHHH---HHHHhcc-CC-CeE--EEEE-CCCCHHHHHHHHHcCCCEEEE
Confidence 34445689999999853 2344433 2222221 11 222 2223 544 45688889999999987
No 217
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=44.29 E-value=1.7e+02 Score=26.54 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=37.1
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEe--ecccChH-HHHHHHHhCCCcEEEEEc
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTH--MCYSNFN-DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH--~C~Gn~~-~i~~~l~~~~~d~~~lE~ 267 (329)
++.+.++|++.|.|-|..-. +.+..+..+...+.+..... +.++++| .=+|=-. ..+.. .+.+++.+.-=.
T Consensus 149 ~~~~~~~G~~~i~l~DT~G~--~~P~~v~~lv~~l~~~~~~~--~i~l~~H~Hn~~GlA~An~laA-i~aG~~~iD~s~ 222 (268)
T cd07940 149 VEAAIEAGATTINIPDTVGY--LTPEEFGELIKKLKENVPNI--KVPISVHCHNDLGLAVANSLAA-VEAGARQVECTI 222 (268)
T ss_pred HHHHHHcCCCEEEECCCCCC--CCHHHHHHHHHHHHHhCCCC--ceeEEEEecCCcchHHHHHHHH-HHhCCCEEEEEe
Confidence 45566789999999887744 34566644444444333221 1344444 4344221 12222 356888765443
No 218
>PLN02808 alpha-galactosidase
Probab=44.16 E-value=1.3e+02 Score=29.25 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCC--------ChHHH-HHHHHHHHHHHcCCCCCceeEEeecccC-
Q 020229 178 LSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDL--------DSHKL-HAFIHSFRITNCGVQDTTQIHTHMCYSN- 247 (329)
Q Consensus 178 ~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C~Gn- 247 (329)
++.+.+.|+++.+ ..|.++|.++|.||+-...... ++..+ .-+...-+.+.+ .+.+.++|.+.|.
T Consensus 48 e~~i~~~a~~mv~--~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~---~GlkfGiy~~~G~~ 122 (386)
T PLN02808 48 ETLIKQTADAMVS--SGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHS---KGLKLGIYSDAGTL 122 (386)
T ss_pred HHHHHHHHHHHHH--cchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHH---CCCceEEEecCCcc
Confidence 5666777776654 4578899999999997754311 11111 112222233322 1356677764331
Q ss_pred ------------hHHHHHHHHhCCCcEEEEEcCC
Q 020229 248 ------------FNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 248 ------------~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
...-+..+.+-+||.+-+|.+.
T Consensus 123 tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~ 156 (386)
T PLN02808 123 TCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCE 156 (386)
T ss_pred ccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcC
Confidence 1245677788899999999875
No 219
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=43.78 E-value=2.6e+02 Score=25.56 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCccC-CCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCc
Q 020229 186 PIYKEVISELKAAGASWIQFDEPLLV-MDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDAD 261 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d 261 (329)
+++++.++.+.+.|++-|.+--.+-- ..++.++...+.+..... .+.++++.+++-..++.+ ......++++|
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~---~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEA---AAGRVPVIAGVGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHH---HTTSSEEEEEEESSSHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH---ccCceEEEecCcchhHHHHHHHHHHHhhcCce
Confidence 35667778888999998777643311 124555554444433222 233467888877445554 44455678999
Q ss_pred EEEEE
Q 020229 262 VITIE 266 (329)
Q Consensus 262 ~~~lE 266 (329)
++.+=
T Consensus 99 ~v~v~ 103 (289)
T PF00701_consen 99 AVLVI 103 (289)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98876
No 220
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=43.21 E-value=1.1e+02 Score=29.20 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHH--CCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH--HHHHHHHhCCCcEEEEE
Q 020229 191 VISELKA--AGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN--DIIHSIIDMDADVITIE 266 (329)
Q Consensus 191 ~i~~l~~--aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~--~i~~~l~~~~~d~~~lE 266 (329)
-+++|.+ +|+++|.||= +-.-+ +.+++.++.+.+..| +..+ ++ ||.. .....|.+.++|++-+=
T Consensus 112 r~~~L~~~~~g~D~iviD~---AhGhs----~~~i~~ik~ik~~~P-~~~v---Ia-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 112 KTKQILALSPALNFICIDV---ANGYS----EHFVQFVAKAREAWP-DKTI---CA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHhcCCCCCEEEEEC---CCCcH----HHHHHHHHHHHHhCC-CCcE---EE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 3455666 5999999992 11111 223455566666565 2333 34 8853 56777888899987544
No 221
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=42.44 E-value=2.4e+02 Score=28.88 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=56.7
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCcee--EEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQI--HTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.++.|.++|++.|.+==|+.. +.+.+.+........ ++.+..+ ..+...|+.+..++.+.+++.+.+++=.+
T Consensus 53 ia~~L~~~Gvd~IE~Gfp~~s----~~D~e~v~~i~~~~l--~~~~~~i~al~~~~~~did~a~~a~~~~~~~~v~i~~~ 126 (564)
T TIGR00970 53 YFDLLVRIGFKEIEVGFPSAS----QTDFDFVREIIEQGA--IPDDVTIQVLTQSREELIERTFEALSGAKRATVHFYNA 126 (564)
T ss_pred HHHHHHHcCCCEEEEeCCCCC----HHHHHHHHHHHHhcC--CCCCcEEEEEcCCchhhHHHHHHHhcCCCCCEEEEEEc
Confidence 356788999999998755533 344444433332210 1212222 23344455656666666777778888877
Q ss_pred CCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 269 RSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 269 ~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
.+..+....++ -|.+++.+.+.++++++
T Consensus 127 ~Sd~h~~~~l~---------------------~s~ee~l~~~~~~v~~a 154 (564)
T TIGR00970 127 TSILFREVVFR---------------------ASRAEVQAIATDGTKLV 154 (564)
T ss_pred CCHHHHHHHhC---------------------CCHHHHHHHHHHHHHHH
Confidence 66554444443 34666666666665554
No 222
>PLN02389 biotin synthase
Probab=42.31 E-value=3.3e+02 Score=26.35 Aligned_cols=117 Identities=8% Similarity=0.053 Sum_probs=64.5
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCC-ChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEEEc
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDL-DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~lE~ 267 (329)
+.++.+.+.|++-+.+=. ++.... .+..++.+.++++.+.+ . .+-++++.|.. .+.+..|.++++|.+.+-+
T Consensus 123 ~~a~~~~~~G~~~~~ivt-s~rg~~~e~~~~e~i~eiir~ik~-~----~l~i~~s~G~l~~E~l~~LkeAGld~~~~~L 196 (379)
T PLN02389 123 EAAKRAKEAGSTRFCMGA-AWRDTVGRKTNFNQILEYVKEIRG-M----GMEVCCTLGMLEKEQAAQLKEAGLTAYNHNL 196 (379)
T ss_pred HHHHHHHHcCCCEEEEEe-cccCCCCChhHHHHHHHHHHHHhc-C----CcEEEECCCCCCHHHHHHHHHcCCCEEEeee
Confidence 345566778998665521 000011 12235666667666652 2 22356666754 3689999999999887655
Q ss_pred CCC------------chhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHH
Q 020229 268 SRS------------DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 315 (329)
Q Consensus 268 ~~~------------~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~ 315 (329)
... ..+.++.+..-...|-.+..|+|=.. .|+.+++++.+..+.+
T Consensus 197 eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl---gEt~edrv~~l~~Lr~ 253 (379)
T PLN02389 197 DTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL---GEAEEDRVGLLHTLAT 253 (379)
T ss_pred cCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC---CCCHHHHHHHHHHHHh
Confidence 411 12223333321123444555555443 5899998888865543
No 223
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=42.30 E-value=1.9e+02 Score=27.59 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCC-CceeEEeecccChHHHHHHH--HhCCCcEEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSI--IDMDADVITIE 266 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~C~Gn~~~i~~~l--~~~~~d~~~lE 266 (329)
+.++.+.++|++.|.|-|..-.. .+..+..+...+ .+..+. ...++.|.=+|-. +...| ++.+++.++.=
T Consensus 201 ~~~~~~~~~Gad~I~l~DT~G~a--~P~~v~~lv~~l---~~~~~~~~i~~H~Hnd~GlA--~AN~lAA~~aGa~~vd~s 273 (347)
T PLN02746 201 YVAKELYDMGCYEISLGDTIGVG--TPGTVVPMLEAV---MAVVPVDKLAVHFHDTYGQA--LANILVSLQMGISTVDSS 273 (347)
T ss_pred HHHHHHHHcCCCEEEecCCcCCc--CHHHHHHHHHHH---HHhCCCCeEEEEECCCCChH--HHHHHHHHHhCCCEEEEe
Confidence 33455677899999998877432 355554444443 333431 1344555555533 34444 46688876655
Q ss_pred cC
Q 020229 267 NS 268 (329)
Q Consensus 267 ~~ 268 (329)
..
T Consensus 274 v~ 275 (347)
T PLN02746 274 VA 275 (347)
T ss_pred cc
Confidence 43
No 224
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=42.05 E-value=1e+02 Score=29.29 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHH--HhCCCcEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSI--IDMDADVI 263 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l--~~~~~d~~ 263 (329)
+.++.+.++|++.|.|-|..-. +.++.+..+..++. +.++++.++++|.= -|+. .+...+ .+.+++.+
T Consensus 148 ~~a~~~~~~Ga~~i~i~DT~G~--~~P~~v~~~v~~l~---~~l~~~i~ig~H~H-nnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 148 EQAKLMESYGAQCVYVVDSAGA--LLPEDVRDRVRALR---AALKPDTQVGFHGH-NNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred HHHHHHHhCCCCEEEeCCCCCC--CCHHHHHHHHHHHH---HhcCCCCeEEEEeC-CCcchHHHHHHHHHHhCCCEE
Confidence 3456677899999999887744 34556544444443 34433456666654 3322 122222 35666643
No 225
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=41.94 E-value=21 Score=30.10 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHHHh---CCccccCCCcccchhH
Q 020229 10 RMGPKRELKFALESFWD---GKSSAEDLQKVSADLRSSIWKQMSEA---GIKYIPSNTFSYYDQV 68 (329)
Q Consensus 10 Rp~~~~eL~~a~~~~~~---g~is~~el~~~~~~~~~~~i~~Q~~~---Gld~itdGe~~~~d~~ 68 (329)
|....++|+.|.+-|.+ |.||..+|..+....=.+.-....+. +.+--.||++.+.+|+
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~ 151 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFK 151 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHH
Confidence 66667899999999975 67999999988764433222222222 3344458888877654
No 226
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=41.89 E-value=53 Score=30.09 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCC----ChHHHHHHH----HHHHHHHcCCCCCceeEEeecccC----hHHHHHHHH
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDL----DSHKLHAFI----HSFRITNCGVQDTTQIHTHMCYSN----FNDIIHSII 256 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~i~lH~C~Gn----~~~i~~~l~ 256 (329)
.++.+++.+||+++|.+.=..-+... ....++... +.++.+ ..+.++. +-+|+|- ++++--.+.
T Consensus 160 ~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa-~~v~~di---i~l~hGGPI~~p~D~~~~l~ 235 (268)
T PF09370_consen 160 EEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA-RAVNPDI---IVLCHGGPIATPEDAQYVLR 235 (268)
T ss_dssp HHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH-HCC-TT----EEEEECTTB-SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH-HHhCCCe---EEEEeCCCCCCHHHHHHHHh
Confidence 46788999999999999844322111 011222222 223333 3454443 5577774 345555556
Q ss_pred hCC-CcEEEEEcC
Q 020229 257 DMD-ADVITIENS 268 (329)
Q Consensus 257 ~~~-~d~~~lE~~ 268 (329)
.++ +++|.=-++
T Consensus 236 ~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 236 NTKGIHGFIGASS 248 (268)
T ss_dssp H-TTEEEEEESTT
T ss_pred cCCCCCEEecccc
Confidence 676 788876655
No 227
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=41.48 E-value=1.8e+02 Score=27.82 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh--HHHHHHHHhCCCcEEEEEc
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF--NDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~--~~i~~~l~~~~~d~~~lE~ 267 (329)
+.+++|.++|+++|.||-.-- -+... .+.++.+.+..+ +.+|+ + ||. ......|.+.++|++-+=.
T Consensus 111 er~~~L~~agvD~ivID~a~g---~s~~~----~~~ik~ik~~~~-~~~vi---a-GNV~T~e~a~~L~~aGad~vkVGi 178 (352)
T PF00478_consen 111 ERAEALVEAGVDVIVIDSAHG---HSEHV----IDMIKKIKKKFP-DVPVI---A-GNVVTYEGAKDLIDAGADAVKVGI 178 (352)
T ss_dssp HHHHHHHHTT-SEEEEE-SST---TSHHH----HHHHHHHHHHST-TSEEE---E-EEE-SHHHHHHHHHTT-SEEEESS
T ss_pred HHHHHHHHcCCCEEEccccCc---cHHHH----HHHHHHHHHhCC-CceEE---e-cccCCHHHHHHHHHcCCCEEEEec
Confidence 345678889999999993321 12222 334455555565 46664 3 553 2567788999999988875
Q ss_pred C
Q 020229 268 S 268 (329)
Q Consensus 268 ~ 268 (329)
-
T Consensus 179 G 179 (352)
T PF00478_consen 179 G 179 (352)
T ss_dssp S
T ss_pred c
Confidence 3
No 228
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=41.31 E-value=3.8e+02 Score=26.86 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=40.3
Q ss_pred EEEEcCC------CchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcC-CCceEeCCCC
Q 020229 263 ITIENSR------SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-TNILWVNPDL 328 (329)
Q Consensus 263 ~~lE~~~------~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~-~~~l~ispdC 328 (329)
.++||+- ....+++.+......+.. .+|+- .+..+-+|.+..+.|+-...-++ .++++|+.-|
T Consensus 189 ~~ieFSpEd~~rse~~fl~eI~~aV~Kag~~-tvnip--dTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~Hc 258 (560)
T KOG2367|consen 189 WDIEFSPEDFGRSELEFLLEILGAVIKAGVT-TVNIP--DTVGIATPNEYGDLIEYLKTNTPGREKVCISTHC 258 (560)
T ss_pred ceEEECccccccCcHHHHHHHHHHHHHhCCc-cccCc--ceecccChHHHHHHHHHHHccCCCceeEEEEEee
Confidence 6777752 234455555531111211 13333 34568999999999999988775 6999999887
No 229
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=41.13 E-value=1.6e+02 Score=25.65 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.+++++|.++||++|-+|-.. ...++.+.. .+.++.+.. .+.+-=| +++++. -.-.++++|.++-=.+
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~---R~Rp~~l~~---li~~i~~~~----~l~MADi-st~ee~-~~A~~~G~D~I~TTLs 121 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATD---RPRPETLEE---LIREIKEKY----QLVMADI-STLEEA-INAAELGFDIIGTTLS 121 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SS---SS-SS-HHH---HHHHHHHCT----SEEEEE--SSHHHH-HHHHHTT-SEEE-TTT
T ss_pred HHHHHHHHHcCCCEEEEecCC---CCCCcCHHH---HHHHHHHhC----cEEeeec-CCHHHH-HHHHHcCCCEEEcccc
Confidence 345788999999999999533 222333433 333333322 4467778 766542 3335788888887654
No 230
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=41.11 E-value=3.6e+02 Score=26.55 Aligned_cols=139 Identities=9% Similarity=0.013 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHC------CCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh---
Q 020229 178 LSLLPKILPIYKEVISELKAA------GASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF--- 248 (329)
Q Consensus 178 ~~l~~~la~~~~~~i~~l~~a------G~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~--- 248 (329)
.+.....++++.+|++...+. .++.|.|-.-+-+ .++.+.+..+.+++..... +..+..+ +|-+|+
T Consensus 87 ~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs-~L~~~~l~~ll~~i~~~~~-l~~~~ei---tiE~~p~~~ 161 (449)
T PRK09058 87 PEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPT-ALSAEDLARLITALREYLP-LAPDCEI---TLEGRINGF 161 (449)
T ss_pred hhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccc-cCCHHHHHHHHHHHHHhCC-CCCCCEE---EEEeCcCcC
Confidence 345566777777777766542 2334444321111 2455666666666655442 2223443 333443
Q ss_pred -HHHHHHHHhCCCcEEEEEcCCCchhHHHHhhh-------------cccCC-CeeeeeeecCCCCCCCCHHHHHHHHHHH
Q 020229 249 -NDIIHSIIDMDADVITIENSRSDEKLLSVFRE-------------GVKYG-AGIGPGVYDIHSPRIPSTEEIADRINKM 313 (329)
Q Consensus 249 -~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~-------------~~~~~-~~i~~Gvvd~~~~~~e~~e~i~~ri~~a 313 (329)
.+.+..+.+++++.+|+-.-....+.++.+.+ ....+ ..+.+-+| .-.--+|.|++.+-++.+
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI--~GlPgqT~e~~~~~l~~~ 239 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLI--FGLPGQTPEIWQQDLAIV 239 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEE--eeCCCCCHHHHHHHHHHH
Confidence 36788999999999998754332333333321 00112 22222222 112357899999988888
Q ss_pred HHhcCCCceEe
Q 020229 314 LAVLETNILWV 324 (329)
Q Consensus 314 ~~~v~~~~l~i 324 (329)
.+ ++++.+.+
T Consensus 240 ~~-l~~~~is~ 249 (449)
T PRK09058 240 RD-LGLDGVDL 249 (449)
T ss_pred Hh-cCCCEEEE
Confidence 75 56666554
No 231
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=41.06 E-value=3.3e+02 Score=26.00 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHH------CCCCeEEec--CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh----H
Q 020229 182 PKILPIYKEVISELKA------AGASWIQFD--EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF----N 249 (329)
Q Consensus 182 ~~la~~~~~~i~~l~~------aG~~~IQiD--EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~----~ 249 (329)
++.++++.+|++...+ ..++.|.|- .|++ ++...+..+.+.++... ++..+..+ +|..|+ .
T Consensus 36 ~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~---l~~~~l~~ll~~i~~~~-~~~~~~e~---t~e~~p~~i~~ 108 (375)
T PRK05628 36 DGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSL---LGAEGLARVLDAVRDTF-GLAPGAEV---TTEANPESTSP 108 (375)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCcccc---CCHHHHHHHHHHHHHhC-CCCCCCEE---EEEeCCCCCCH
Confidence 3344555555554433 225566663 4542 33456655555554433 33223333 222332 3
Q ss_pred HHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCC---------Ceeeeeee--cC-CCCCCCCHHHHHHHHHHHHHhc
Q 020229 250 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYG---------AGIGPGVY--DI-HSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 250 ~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~---------~~i~~Gvv--d~-~~~~~e~~e~i~~ri~~a~~~v 317 (329)
+.+..|.+++++.+++-.-....+.++.+.+....+ +..++-.| |- ...--+|.+++.+-++.+.+ +
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~-l 187 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALE-A 187 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHh-c
Confidence 688999999999999886543333333332100000 00011111 11 11235899999888887764 5
Q ss_pred CCCceEe
Q 020229 318 ETNILWV 324 (329)
Q Consensus 318 ~~~~l~i 324 (329)
+++++.+
T Consensus 188 ~~~~i~~ 194 (375)
T PRK05628 188 GVDHVSA 194 (375)
T ss_pred CCCEEEe
Confidence 6676654
No 232
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=40.91 E-value=2.6e+02 Score=25.12 Aligned_cols=68 Identities=9% Similarity=0.143 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEE
Q 020229 184 ILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 263 (329)
Q Consensus 184 la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~ 263 (329)
+-++++. .+++.++|++.|.+.-+. +.++++.+.+.+ + .++.+..=.+.. -.+.|.++++..+
T Consensus 154 ~deaI~R-~~aY~eAGAD~ifi~~~~-----~~~~i~~~~~~~-----~----~Pl~v~~~~~~~--~~~eL~~lGv~~v 216 (238)
T PF13714_consen 154 LDEAIER-AKAYAEAGADMIFIPGLQ-----SEEEIERIVKAV-----D----GPLNVNPGPGTL--SAEELAELGVKRV 216 (238)
T ss_dssp HHHHHHH-HHHHHHTT-SEEEETTSS-----SHHHHHHHHHHH-----S----SEEEEETTSSSS---HHHHHHTTESEE
T ss_pred HHHHHHH-HHHHHHcCCCEEEeCCCC-----CHHHHHHHHHhc-----C----CCEEEEcCCCCC--CHHHHHHCCCcEE
Confidence 3334433 677889999999998662 334454443332 2 344333322233 4899999999999
Q ss_pred EEEcC
Q 020229 264 TIENS 268 (329)
Q Consensus 264 ~lE~~ 268 (329)
++-..
T Consensus 217 ~~~~~ 221 (238)
T PF13714_consen 217 SYGNS 221 (238)
T ss_dssp EETSH
T ss_pred EEcHH
Confidence 87643
No 233
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=40.84 E-value=2.7e+02 Score=25.05 Aligned_cols=125 Identities=13% Similarity=0.146 Sum_probs=77.8
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+...++.+.|.+-+-|---+.+- ..-.+..|.+.++++.+... ..+.-|+-+=+ ++.+..+.+.++|+.++|+..
T Consensus 46 k~~~el~kkGy~g~llSGGm~sr--g~VPl~kf~d~lK~lke~~~--l~inaHvGfvd-E~~~eklk~~~vdvvsLDfvg 120 (275)
T COG1856 46 KRCMELEKKGYEGCLLSGGMDSR--GKVPLWKFKDELKALKERTG--LLINAHVGFVD-ESDLEKLKEELVDVVSLDFVG 120 (275)
T ss_pred HHHHHHHhcCceeEEEeCCcCCC--CCccHHHHHHHHHHHHHhhC--eEEEEEeeecc-HHHHHHHHHhcCcEEEEeecC
Confidence 45556777887655444222111 01234556666666665543 67788998766 678999999999999999874
Q ss_pred Cch----------------hHHHHhhh-cc----------------------------cCCCeeeeeeecCCC-----CC
Q 020229 270 SDE----------------KLLSVFRE-GV----------------------------KYGAGIGPGVYDIHS-----PR 299 (329)
Q Consensus 270 ~~~----------------~~l~~l~~-~~----------------------------~~~~~i~~Gvvd~~~-----~~ 299 (329)
.+. +.++.+++ .+ +.+..+..+++++-- ..
T Consensus 121 Dn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~ 200 (275)
T COG1856 121 DNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSP 200 (275)
T ss_pred ChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCC
Confidence 321 11223332 00 012345556666532 23
Q ss_pred CCCHHHHHHHHHHHHHhcCC
Q 020229 300 IPSTEEIADRINKMLAVLET 319 (329)
Q Consensus 300 ~e~~e~i~~ri~~a~~~v~~ 319 (329)
-.++||+.+.++.|-+.++.
T Consensus 201 pp~~eE~i~v~~~AR~~f~~ 220 (275)
T COG1856 201 PPPVEEAIKVVKYARKKFPN 220 (275)
T ss_pred CcCHHHHHHHHHHHHHhCCC
Confidence 57899999999999998875
No 234
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=40.79 E-value=2.7e+02 Score=26.18 Aligned_cols=74 Identities=12% Similarity=0.256 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCCeEEecC--CccCCCCChHHH-HHHHHHHHHHHcCCCCCceeEEeecccCh---HHHHHHHHhCCCcEE
Q 020229 190 EVISELKAAGASWIQFDE--PLLVMDLDSHKL-HAFIHSFRITNCGVQDTTQIHTHMCYSNF---NDIIHSIIDMDADVI 263 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDE--P~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~---~~i~~~l~~~~~d~~ 263 (329)
+.++.+.++|++.|+|.= |-...+...... +.+.+.+..+.+..+ .++.+-+- +++ .++...+.+.++|++
T Consensus 118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~--iPV~vKl~-p~~~~~~~~a~~l~~~G~dgI 194 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS--IPVAVKLS-PYFSNLANMAKRLDAAGADGL 194 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC--CcEEEEeC-CCchhHHHHHHHHHHcCCCeE
Confidence 334556678999999962 111111111111 334555666655543 57777765 444 467778889999999
Q ss_pred EEE
Q 020229 264 TIE 266 (329)
Q Consensus 264 ~lE 266 (329)
.+=
T Consensus 195 ~~~ 197 (334)
T PRK07565 195 VLF 197 (334)
T ss_pred EEE
Confidence 763
No 235
>PRK07360 FO synthase subunit 2; Reviewed
Probab=40.52 E-value=3.4e+02 Score=26.01 Aligned_cols=111 Identities=12% Similarity=0.185 Sum_probs=59.2
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec-------------ccCh-HHHHHHH
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC-------------YSNF-NDIIHSI 255 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C-------------~Gn~-~~i~~~l 255 (329)
+.++...+.|++-+.|-- ...++...++.+.++++.+.+..+ .+|+| .|.. .+.+..|
T Consensus 98 ~~a~~a~~~G~~~i~l~~---G~~p~~~~~e~~~~~i~~ik~~~~-----~i~i~a~s~~ei~~~~~~~G~~~~e~l~~L 169 (371)
T PRK07360 98 EKAAEAVKRGATEVCIQG---GLHPAADSLEFYLEILEAIKEEFP-----DIHLHAFSPMEVYFAAREDGLSYEEVLKAL 169 (371)
T ss_pred HHHHHHHhCCCCEEEEcc---CCCCCCCcHHHHHHHHHHHHHhCC-----CcceeeCCHHHHHHHHhhcCCCHHHHHHHH
Confidence 334567788999776651 112222234445566666655333 24555 1432 3678999
Q ss_pred HhCCCcEEE---EEc----------CC--CchhHHHHhh---h-cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHH
Q 020229 256 IDMDADVIT---IEN----------SR--SDEKLLSVFR---E-GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 315 (329)
Q Consensus 256 ~~~~~d~~~---lE~----------~~--~~~~~l~~l~---~-~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~ 315 (329)
.++++|.+. -|. .. +..+-++.+. + .++......+|. .||.|+.++.+....+
T Consensus 170 keAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~-------gEt~edrv~~l~~lr~ 241 (371)
T PRK07360 170 KDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGH-------VETPEHRIDHLLILRE 241 (371)
T ss_pred HHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeC-------CCCHHHHHHHHHHHHH
Confidence 999999985 221 11 1112233332 2 122233344444 4889988888877654
No 236
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=40.49 E-value=3.3e+02 Score=25.87 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCC--eEEec-CCccCCC--C-ChHHHHH----HHHHHHHHHcCCCCCceeEEeecc
Q 020229 176 SLLSLLPKILPIYKEVISELKAAGAS--WIQFD-EPLLVMD--L-DSHKLHA----FIHSFRITNCGVQDTTQIHTHMCY 245 (329)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~l~~aG~~--~IQiD-EP~l~~~--~-~~~~~~~----~~~~~~~~~~~~~~~~~i~lH~C~ 245 (329)
+..+|..++.+-..+.+.+|.++|+. +|||= |-...+- . .....+. +...++.+.+.- .+.+|.||+-.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~-p~~kV~lH~~~ 178 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD-PNIKVMLHLAN 178 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS-STSEEEEEES-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC-CCCcEEEEECC
Confidence 56788888888889999999999987 89996 4332221 1 1222222 233344444433 36899999885
Q ss_pred cC-h---HHHHHHHHh--CCCcEEEEEcC
Q 020229 246 SN-F---NDIIHSIID--MDADVITIENS 268 (329)
Q Consensus 246 Gn-~---~~i~~~l~~--~~~d~~~lE~~ 268 (329)
|. . .-.++.|.+ .++|.|.+=|.
T Consensus 179 ~~~~~~~~~~f~~l~~~g~d~DviGlSyY 207 (332)
T PF07745_consen 179 GGDNDLYRWFFDNLKAAGVDFDVIGLSYY 207 (332)
T ss_dssp TTSHHHHHHHHHHHHHTTGG-SEEEEEE-
T ss_pred CCchHHHHHHHHHHHhcCCCcceEEEecC
Confidence 53 2 346777765 57799998865
No 237
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=40.33 E-value=2.9e+02 Score=25.11 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEe----cCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQF----DEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII 256 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQi----DEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~ 256 (329)
++.+.+.-..+.++|.+.|++-|-+ |-|+.. +.+++...++..+.+++.+.+. .++++-+-|-+....+..-.
T Consensus 29 ~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k-~v~~~tvaaMa~iv~~v~r~v~--iPvGvNVLrNd~vaA~~IA~ 105 (263)
T COG0434 29 LEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLK-DVGPETVAAMAVIVREVVREVS--IPVGVNVLRNDAVAALAIAY 105 (263)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCChHHHHHHHHHHHHHHHhcc--ccceeeeeccccHHHHHHHH
Confidence 3555556677789999999996655 457766 6677777777777777777664 67788887644444444444
Q ss_pred hCCCcEEEEE
Q 020229 257 DMDADVITIE 266 (329)
Q Consensus 257 ~~~~d~~~lE 266 (329)
..+++.|-+.
T Consensus 106 a~gA~FIRVN 115 (263)
T COG0434 106 AVGADFIRVN 115 (263)
T ss_pred hcCCCEEEEE
Confidence 5566666655
No 238
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=40.28 E-value=28 Score=32.89 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 298 PRIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 298 ~~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
..++|||+|+++|++..+..|.+++.+.+++|
T Consensus 283 ~lvGtPe~V~e~i~~~~~~~G~d~~~l~~~~~ 314 (337)
T TIGR03858 283 LYVGSPETVAEKIADTIETLGLDRFMLHYSVG 314 (337)
T ss_pred eeeeCHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 46899999999999988878999999988764
No 239
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=40.24 E-value=3.4e+02 Score=25.90 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 186 PIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
++..+++++|.++||++|-+-=|... . .+++..+.++.+ .+++--+=|- |. +.-.-.+.++|.+-+
T Consensus 34 ~atv~QI~~L~~aGceiVRvavp~~~------~----A~al~~I~~~~~--iPlVADIHFd-~~-lAl~a~~~g~dkiRI 99 (346)
T TIGR00612 34 DSTVAQIRALEEAGCDIVRVTVPDRE------S----AAAFEAIKEGTN--VPLVADIHFD-YR-LAALAMAKGVAKVRI 99 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHH------H----HHhHHHHHhCCC--CCEEEeeCCC-cH-HHHHHHHhccCeEEE
Confidence 35566789999999999999866522 1 334455555554 4555444432 32 222234556776666
Q ss_pred EcCCC--chhHHHHhhhcccCCCeeeeeeecCCCCC--------CCCHHHHHHHHHHH---HHhcCCCceEeC
Q 020229 266 ENSRS--DEKLLSVFREGVKYGAGIGPGVYDIHSPR--------IPSTEEIADRINKM---LAVLETNILWVN 325 (329)
Q Consensus 266 E~~~~--~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~--------~e~~e~i~~ri~~a---~~~v~~~~l~is 325 (329)
-=-+- ..+..+++..-...+..+=+|| ++.|.. -.++|-+.+-..+- ++.++..++.+|
T Consensus 100 NPGNig~~e~v~~vv~~ak~~~ipIRIGV-N~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS 171 (346)
T TIGR00612 100 NPGNIGFRERVRDVVEKARDHGKAMRIGV-NHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLS 171 (346)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEec-CCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 53331 2233333332123466777777 444422 13666554444333 334456777765
No 240
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=40.21 E-value=2.2e+02 Score=26.11 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=51.6
Q ss_pred HHHHHHHHHHH-CCCCeEEecCCccC-CCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCc
Q 020229 187 IYKEVISELKA-AGASWIQFDEPLLV-MDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDAD 261 (329)
Q Consensus 187 ~~~~~i~~l~~-aG~~~IQiDEP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d 261 (329)
++++.++.+.+ .|++-|.+--.+-- ..++.++...+.+..-... ++..+++.++...++.+ ......++++|
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~---~~~~~viagvg~~~t~~ai~~a~~a~~~Gad 101 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEA---KGKVKLIAQVGSVNTAEAQELAKYATELGYD 101 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHh---CCCCCEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 45666778888 99997776643211 1245555544443332222 23467788885355553 34455678999
Q ss_pred EEEEEcC---C-CchhHHHHhhh
Q 020229 262 VITIENS---R-SDEKLLSVFRE 280 (329)
Q Consensus 262 ~~~lE~~---~-~~~~~l~~l~~ 280 (329)
++.+=-. . +..++.+.+..
T Consensus 102 ~v~v~~P~y~~~~~~~l~~~f~~ 124 (293)
T PRK04147 102 AISAVTPFYYPFSFEEICDYYRE 124 (293)
T ss_pred EEEEeCCcCCCCCHHHHHHHHHH
Confidence 8887632 2 22455555543
No 241
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.17 E-value=3.8e+02 Score=26.54 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHCCCCeEEecC---CccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeeccc--ChHHHHHHHHhC-CC
Q 020229 187 IYKEVISELKAAGASWIQFDE---PLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYS--NFNDIIHSIIDM-DA 260 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDE---P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G--n~~~i~~~l~~~-~~ 260 (329)
.+.++++.|.++|++-|.|-- -+...|+... ...|.+.++.+.+ +++...+.+|+..- -.+++++.+.+. ++
T Consensus 177 ~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~-~~~l~~Ll~~l~~-I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv 254 (437)
T COG0621 177 DILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGG-KPNLADLLRELSK-IPGIERIRFGSSHPLEFTDDLIEAIAETPKV 254 (437)
T ss_pred HHHHHHHHHHHCCCeEEEEEEEehhhccccCCCC-ccCHHHHHHHHhc-CCCceEEEEecCCchhcCHHHHHHHhcCCcc
Confidence 344568889999999666642 2222233321 2224555566655 65556777777732 124677777775 33
Q ss_pred -cEEEEEcCCCchhHHHHh
Q 020229 261 -DVITIENSRSDEKLLSVF 278 (329)
Q Consensus 261 -d~~~lE~~~~~~~~l~~l 278 (329)
..||+..-+...++|+.+
T Consensus 255 ~~~lHlPvQsGsd~ILk~M 273 (437)
T COG0621 255 CPHLHLPVQSGSDRILKRM 273 (437)
T ss_pred cccccCccccCCHHHHHHh
Confidence 667776544333444443
No 242
>PRK05481 lipoyl synthase; Provisional
Probab=39.98 E-value=3e+02 Score=25.34 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=66.4
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh---HHHHHHHHhCCCcEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF---NDIIHSIIDMDADVITI 265 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~---~~i~~~l~~~~~d~~~l 265 (329)
.++++.+.+.|++.|.|---... +........+.+.++.+.+..+ .. .++.|..++ .+.+..+.+.+++.+..
T Consensus 86 ~~ea~~l~~~G~kEI~L~gg~~~-d~~~~~~~~l~~Ll~~I~~~~p-~i--rI~~l~~~~~~~~e~L~~l~~ag~~i~~~ 161 (289)
T PRK05481 86 ERVAEAVARMGLKYVVITSVDRD-DLPDGGAQHFAETIRAIRELNP-GT--TIEVLIPDFRGRMDALLTVLDARPDVFNH 161 (289)
T ss_pred HHHHHHHHHCCCCEEEEEEeeCC-CcccccHHHHHHHHHHHHhhCC-Cc--EEEEEccCCCCCHHHHHHHHhcCcceeec
Confidence 34456677889996666511100 1111122345556666654444 23 467775543 24566667777777765
Q ss_pred ------Ec----CC--CchhHHHHhhh---cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 266 ------EN----SR--SDEKLLSVFRE---GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 266 ------E~----~~--~~~~~l~~l~~---~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
+. .+ ...+.++.+.. .+| |-.+.-|+|=. ..||.|+..+.++.+ +.++.+++.+.
T Consensus 162 ~~ets~~vlk~m~r~~t~e~~le~i~~ar~~~p-gi~~~t~~IvG---fGET~ed~~~tl~~l-rel~~d~v~if 231 (289)
T PRK05481 162 NLETVPRLYKRVRPGADYERSLELLKRAKELHP-GIPTKSGLMVG---LGETDEEVLEVMDDL-RAAGVDILTIG 231 (289)
T ss_pred cccChHHHHHHhCCCCCHHHHHHHHHHHHHhCC-CCeEeeeeEEE---CCCCHHHHHHHHHHH-HhcCCCEEEEE
Confidence 21 11 12233444332 111 32222333322 159999998887776 56788887774
No 243
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=39.72 E-value=2.4e+02 Score=25.71 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=41.6
Q ss_pred HHHCCCCeEEecCCccCC--CC-C--hHHHHHHHHHHHHHHcCCCCCce-eEEeecccChHH--------HHHHHHhCCC
Q 020229 195 LKAAGASWIQFDEPLLVM--DL-D--SHKLHAFIHSFRITNCGVQDTTQ-IHTHMCYSNFND--------IIHSIIDMDA 260 (329)
Q Consensus 195 l~~aG~~~IQiDEP~l~~--~~-~--~~~~~~~~~~~~~~~~~~~~~~~-i~lH~C~Gn~~~--------i~~~l~~~~~ 260 (329)
+.++|++.|..-+..... .. + .-.++.+......+.++.+ .+ ++.-+-||+|.. ....+.+.++
T Consensus 28 ~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~--~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa 105 (254)
T cd06557 28 ADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAP--RALVVADMPFGSYQTSPEQALRNAARLMKEAGA 105 (254)
T ss_pred HHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCC--CCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCC
Confidence 456799988765443111 11 1 1234555555566666665 34 555566676532 3444445999
Q ss_pred cEEEEEcC
Q 020229 261 DVITIENS 268 (329)
Q Consensus 261 d~~~lE~~ 268 (329)
+++.+|=.
T Consensus 106 ~aVkiEd~ 113 (254)
T cd06557 106 DAVKLEGG 113 (254)
T ss_pred eEEEEcCc
Confidence 99999954
No 244
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=39.47 E-value=3.1e+02 Score=25.28 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccC-CCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHH---HHHHHHhCCCcE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLV-MDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDMDADV 262 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~---i~~~l~~~~~d~ 262 (329)
++++.++.+.+.|++-|.+---+-- ..++.++...+.+. +.+..+++.+|..|++.-++.+ ......++++|+
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~---~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~ 98 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIEN---AIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADA 98 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHH---HHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCE
Confidence 4556677788899997776532211 12455555333333 2332333478888998444543 344446789999
Q ss_pred EEEEcC---C-CchhHHHHhhhccc-C-CCeeeeeeecCCCCCCCCHHHHHHHH
Q 020229 263 ITIENS---R-SDEKLLSVFREGVK-Y-GAGIGPGVYDIHSPRIPSTEEIADRI 310 (329)
Q Consensus 263 ~~lE~~---~-~~~~~l~~l~~~~~-~-~~~i~~Gvvd~~~~~~e~~e~i~~ri 310 (329)
+.+--. . +..+..+.+..... . +..+++=.++..+...=+++.+.+..
T Consensus 99 v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 99 AMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred EEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 888743 2 22455555543111 1 23344444444444444466555443
No 245
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=39.21 E-value=3.5e+02 Score=25.79 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHC---CCCeEEe--cCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHH
Q 020229 182 PKILPIYKEVISELKAA---GASWIQF--DEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSI 255 (329)
Q Consensus 182 ~~la~~~~~~i~~l~~a---G~~~IQi--DEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l 255 (329)
.+..+++.++++.+... +++.|.+ ..|++ ++...+..+.+.+++.. ++.....+.+-+-.++. .+.+..+
T Consensus 31 ~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~---l~~~~l~~ll~~i~~~~-~~~~~~eit~e~~p~~l~~e~l~~l 106 (377)
T PRK08599 31 DEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTA---LSAEQLERLLTAIHRNL-PLSGLEEFTFEANPGDLTKEKLQVL 106 (377)
T ss_pred HHHHHHHHHHHHHhhhcCCCceeEEEeCCCCccc---CCHHHHHHHHHHHHHhC-CCCCCCEEEEEeCCCCCCHHHHHHH
Confidence 34455566666554444 3444555 34442 23455655555554443 23322344443332322 3678889
Q ss_pred HhCCCcEEEEEcCCCchhHHHH-------------hhhcccCC-CeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 020229 256 IDMDADVITIENSRSDEKLLSV-------------FREGVKYG-AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI 321 (329)
Q Consensus 256 ~~~~~d~~~lE~~~~~~~~l~~-------------l~~~~~~~-~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~ 321 (329)
.+++++.+++=.-....+.++. +......+ ..+.+.+| -...-+|.+++.+.++.+.+ +++++
T Consensus 107 ~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli--~GlPgqt~~~~~~~l~~~~~-l~~~~ 183 (377)
T PRK08599 107 KDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLI--YALPGQTIEDFKESLAKALA-LDIPH 183 (377)
T ss_pred HHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeee--cCCCCCCHHHHHHHHHHHHc-cCCCE
Confidence 9999999887654322222222 22100011 11222222 12235899999998888754 56666
Q ss_pred eEe
Q 020229 322 LWV 324 (329)
Q Consensus 322 l~i 324 (329)
+.+
T Consensus 184 i~~ 186 (377)
T PRK08599 184 YSA 186 (377)
T ss_pred Eee
Confidence 644
No 246
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=38.75 E-value=2.9e+02 Score=27.01 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=54.3
Q ss_pred HHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHHHHhCCCcEEEEEc
Q 020229 193 SELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITIEN 267 (329)
Q Consensus 193 ~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~l~~~~~d~~~lE~ 267 (329)
.++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+...-.+.++ |... +..+...+.+++++-+++
T Consensus 162 y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~a~~~G~~~~mv~~ 240 (407)
T TIGR03332 162 RQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLT-GRTFDLKDKAKRAAELGADVLLFNV 240 (407)
T ss_pred HHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCC-CCHHHHHHHHHHHHHhCCCEEEEec
Confidence 456778999999999864433333 3346667777777653321122233344 6554 345566778888888888
Q ss_pred CCCchhHHHHhhh
Q 020229 268 SRSDEKLLSVFRE 280 (329)
Q Consensus 268 ~~~~~~~l~~l~~ 280 (329)
...+...++.+.+
T Consensus 241 ~~~G~~~~~~l~~ 253 (407)
T TIGR03332 241 FAYGLDVLQSLAE 253 (407)
T ss_pred cccChHHHHHHHh
Confidence 7766666666653
No 247
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=38.08 E-value=2.3e+02 Score=26.64 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=47.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~l~~~~~d~~~lE 266 (329)
+.++...|+|+|-=||....-..++ +-+..+.++++++.+.-.+...-.+.++-+... +..+...+.+++++-++
T Consensus 36 ~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~em~~ra~~a~~~G~~~vmv~ 115 (309)
T PF00016_consen 36 AYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAANITADTPDEMIERAEYAKEAGANAVMVN 115 (309)
T ss_dssp HHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHHHHHHHHHHHHHTGSEEEEE
T ss_pred HHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecccccccHHHHHHhhhhhhhhccchhhcc
Confidence 3456678999999999875443433 334667777777765322123334555523444 44566678899999988
Q ss_pred cCCCch
Q 020229 267 NSRSDE 272 (329)
Q Consensus 267 ~~~~~~ 272 (329)
+...++
T Consensus 116 ~~~~G~ 121 (309)
T PF00016_consen 116 VLTAGF 121 (309)
T ss_dssp HHHHCH
T ss_pred cccccc
Confidence 654443
No 248
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.97 E-value=3.2e+02 Score=25.00 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCeEEecCCccCCC-CChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHHHHhCCC
Q 020229 186 PIYKEVISELKAA-GASWIQFDEPLLVMD-LDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDMDA 260 (329)
Q Consensus 186 ~~~~~~i~~l~~a-G~~~IQiDEP~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~l~~~~~ 260 (329)
+.+++.++.+.+. |++-|.+--.+--.. ++.++...+.+..-....+. +++..++...++. .......++++
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~---~~viagv~~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGK---VTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCC---CeEEeccCCCCHHHHHHHHHHHHHcCC
Q ss_pred cEEEE
Q 020229 261 DVITI 265 (329)
Q Consensus 261 d~~~l 265 (329)
|++.+
T Consensus 98 d~v~~ 102 (288)
T cd00954 98 DAISA 102 (288)
T ss_pred CEEEE
No 249
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.62 E-value=1.5e+02 Score=29.58 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH--HHHHHHHhCCCcEE
Q 020229 186 PIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN--DIIHSIIDMDADVI 263 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~--~i~~~l~~~~~d~~ 263 (329)
+...+.++.|.++|++.|.+|--- ..+ . .+.+.++.+.+..| +..+ +| ||.. +-...+.++++|++
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~---~~~-~---~~~~~i~~ik~~~p-~~~v---~a-gnv~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH---GHQ-E---KMLEALRAVRALDP-GVPI---VA-GNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC---Ccc-H---HHHHHHHHHHHHCC-CCeE---Ee-eccCCHHHHHHHHHcCCCEE
Confidence 446678889999999999999322 111 1 12444555555555 3444 34 6643 45667778899998
Q ss_pred EEE
Q 020229 264 TIE 266 (329)
Q Consensus 264 ~lE 266 (329)
.+=
T Consensus 294 ~vg 296 (479)
T PRK07807 294 KVG 296 (479)
T ss_pred EEC
Confidence 744
No 250
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.61 E-value=3.8e+02 Score=25.72 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEec--CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHH
Q 020229 178 LSLLPKILPIYKEVISELKAAGASWIQFD--EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHS 254 (329)
Q Consensus 178 ~~l~~~la~~~~~~i~~l~~aG~~~IQiD--EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~ 254 (329)
+++++.+.+-+...+..+...+++.|.|- +|++ ++.+.+..+.+.++.... +..+..+.+-+=.++. .+.+..
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~---l~~~~l~~ll~~l~~~~~-~~~~~eit~e~np~~l~~e~l~~ 112 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSL---FSAEAIQRLLDGVRARLP-FAPDAEITMEANPGTVEADRFVG 112 (378)
T ss_pred HHHHHHHHHHHHHHhHhccCCceeEEEeCCCcccc---CCHHHHHHHHHHHHHhCC-CCCCcEEEEEeCcCcCCHHHHHH
Confidence 34555554444433333322456666664 4553 235566555555544432 2123444333221222 367888
Q ss_pred HHhCCCcEEEEEcCCCchhHHHHhhhcc-------------cCC-CeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 020229 255 IIDMDADVITIENSRSDEKLLSVFREGV-------------KYG-AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETN 320 (329)
Q Consensus 255 l~~~~~d~~~lE~~~~~~~~l~~l~~~~-------------~~~-~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~ 320 (329)
|.+++++.+++-.-....+.++.+.+.. ..+ +.+.+-++ ...--+|.+.+.+-++.+.+ ++++
T Consensus 113 Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli--~Glpgqt~~~~~~~l~~~~~-l~p~ 189 (378)
T PRK05660 113 YQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLM--HGLPDQSLEEALDDLRQAIA-LNPP 189 (378)
T ss_pred HHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCCCHHHHHHHHHHHHh-cCCC
Confidence 9999999999886543333333332100 001 11112222 22235899999999998876 5667
Q ss_pred ceEe
Q 020229 321 ILWV 324 (329)
Q Consensus 321 ~l~i 324 (329)
++.+
T Consensus 190 ~is~ 193 (378)
T PRK05660 190 HLSW 193 (378)
T ss_pred eEEe
Confidence 6654
No 251
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=37.09 E-value=3.4e+02 Score=25.00 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=67.7
Q ss_pred HHHHHHHHCC-----CCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEE
Q 020229 190 EVISELKAAG-----ASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 264 (329)
Q Consensus 190 ~~i~~l~~aG-----~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~ 264 (329)
+.++.|.++| ++.|.+ |+++ ..+.+.+..... .+.+ ...+..| ++.|.+++ +...+++++.++
T Consensus 25 ~i~~~L~~~G~~~~~v~~IE~--~s~~----~~d~~~v~~~~~---~~~~-~~~v~~~-~r~~~~di-e~A~~~g~~~v~ 92 (279)
T cd07947 25 KIYDYLHELGGGSGVIRQTEF--FLYT----EKDREAVEACLD---RGYK-FPEVTGW-IRANKEDL-KLVKEMGLKETG 92 (279)
T ss_pred HHHHHHHHcCCCCCccceEEe--cCcC----hHHHHHHHHHHH---cCCC-CCEEEEE-ecCCHHHH-HHHHHcCcCEEE
Confidence 4466788999 999998 6533 334333333221 2321 1245556 77888775 666788999888
Q ss_pred EEcCCC-----------chhHHHHhhh----cccCCCeeeeeeecCCCCCC-CCHHHHHHHHHHHHHhcCCC-ceEeC
Q 020229 265 IENSRS-----------DEKLLSVFRE----GVKYGAGIGPGVYDIHSPRI-PSTEEIADRINKMLAVLETN-ILWVN 325 (329)
Q Consensus 265 lE~~~~-----------~~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~~-e~~e~i~~ri~~a~~~v~~~-~l~is 325 (329)
+-.+.+ ..+.++.+.+ -...+..+.+++=|...+.. +..-+...++.+++...|.+ ++.++
T Consensus 93 i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~ 170 (279)
T cd07947 93 ILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLC 170 (279)
T ss_pred EEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEec
Confidence 876532 2233333332 01235677777765533322 33334555555555556766 56554
No 252
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=36.96 E-value=3.1e+02 Score=25.23 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHCC-CCeEEecC--CccCC-CC-ChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh---HHHHHHHHhCCCc
Q 020229 190 EVISELKAAG-ASWIQFDE--PLLVM-DL-DSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF---NDIIHSIIDMDAD 261 (329)
Q Consensus 190 ~~i~~l~~aG-~~~IQiDE--P~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~---~~i~~~l~~~~~d 261 (329)
+.++.+.++| ++.|+|.- |.... .. -....+.+.+.+..+.+.. +.++.+.+- .+. ..+...+.+.++|
T Consensus 108 ~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~-~~~~~~~~~a~~l~~~G~d 184 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLT-PNVTDIVEIAKAAEEAGAD 184 (301)
T ss_pred HHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcC-CCchhHHHHHHHHHHcCCC
Confidence 3345567888 99999852 32211 00 0011122334444444333 356777765 333 3567778889999
Q ss_pred EEEE
Q 020229 262 VITI 265 (329)
Q Consensus 262 ~~~l 265 (329)
++.+
T Consensus 185 ~i~~ 188 (301)
T PRK07259 185 GLSL 188 (301)
T ss_pred EEEE
Confidence 9875
No 253
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.66 E-value=68 Score=30.51 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=53.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecC----------CccCCCCChHHH-HHHHHHHHHHHcCCCC--
Q 020229 169 KGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDE----------PLLVMDLDSHKL-HAFIHSFRITNCGVQD-- 235 (329)
Q Consensus 169 ~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDE----------P~l~~~~~~~~~-~~~~~~~~~~~~~~~~-- 235 (329)
.+|-. -|.+..+..|..+..-.++. .+.| +|.||| |+++-|.|.+.+ +++...++--..++|+
T Consensus 136 AGYVG-EDVENillkLlqaadydV~r-AerG--IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqG 211 (408)
T COG1219 136 AGYVG-EDVENILLKLLQAADYDVER-AERG--IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQG 211 (408)
T ss_pred ccccc-hhHHHHHHHHHHHcccCHHH-HhCC--eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCC
Confidence 45543 36777777776665443432 2446 588886 566677787776 4444444443444542
Q ss_pred ------------CceeEEeecccChHHHHHHHH-hCCCcEEEEE
Q 020229 236 ------------TTQIHTHMCYSNFNDIIHSII-DMDADVITIE 266 (329)
Q Consensus 236 ------------~~~i~lH~C~Gn~~~i~~~l~-~~~~d~~~lE 266 (329)
++.=+|.+|-|-|..+-..+. .++-..+.|-
T Consensus 212 GRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~ 255 (408)
T COG1219 212 GRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFG 255 (408)
T ss_pred CCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccc
Confidence 455579999777754333332 2444444443
No 254
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=36.30 E-value=44 Score=31.12 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceEeCCCCC
Q 020229 299 RIPSTEEIADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 299 ~~e~~e~i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
.++|||+|+++|++..+..|.+++.+.+++|
T Consensus 272 ~vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~ 302 (315)
T cd01096 272 AVGTPEECIEIIQLAIEATGIKNILLSFESM 302 (315)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeccCC
Confidence 4799999999999888888999999888753
No 255
>PRK01060 endonuclease IV; Provisional
Probab=35.94 E-value=3.3e+02 Score=24.49 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=8.2
Q ss_pred HHHHHHCCCCeEEec
Q 020229 192 ISELKAAGASWIQFD 206 (329)
Q Consensus 192 i~~l~~aG~~~IQiD 206 (329)
++.+.++|++.|||.
T Consensus 18 l~~~~~~G~d~vEl~ 32 (281)
T PRK01060 18 VAEAAEIGANAFMIF 32 (281)
T ss_pred HHHHHHcCCCEEEEE
Confidence 344555666666553
No 256
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=35.90 E-value=4.2e+02 Score=25.76 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=34.0
Q ss_pred HHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHHHHh
Q 020229 196 KAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIID 257 (329)
Q Consensus 196 ~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~l~~ 257 (329)
...|++.|.|---+-..+......++|..+.+.+.+..+ .+++|-.| ||.+ ++++.-++
T Consensus 150 ~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~--vPLIL~gs-g~~~kD~eVLeaaLe 211 (389)
T TIGR00381 150 KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVD--VPIVIGGS-GNPEKDPLVLEKAAE 211 (389)
T ss_pred HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCC--CCEEEeCC-CCCcCCHHHHHHHHH
Confidence 578999888873221111111223445666677766664 77888888 8765 34444444
No 257
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=35.89 E-value=2.2e+02 Score=25.48 Aligned_cols=94 Identities=5% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCc--EEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCC
Q 020229 220 HAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD--VITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHS 297 (329)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d--~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~ 297 (329)
+.|.+.+..+.+ . +.++.||+= +-..++++.|.+.+.. .+-+=..+++.+..+.+-+ .|-.++++-.-+..
T Consensus 111 ~vF~~ql~lA~~-~--~~pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~---~g~~~S~~~~~~~~ 183 (255)
T PF01026_consen 111 EVFERQLELAKE-L--NLPVSIHCR-KAHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLD---LGCYFSFSGAITFK 183 (255)
T ss_dssp HHHHHHHHHHHH-H--TCEEEEEEE-SHHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHH---TTEEEEEEGGGGST
T ss_pred HHHHHHHHHHHH-h--CCcEEEecC-CcHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHh---cCceEEeccccccc
Confidence 334444444432 2 246777866 6666777777776532 2222222333333333322 23344444332211
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEeCCCC
Q 020229 298 PRIPSTEEIADRINKMLAVLETNILWVNPDL 328 (329)
Q Consensus 298 ~~~e~~e~i~~ri~~a~~~v~~~~l~ispdC 328 (329)
. .++.+++++.+|.+++.+-+|+
T Consensus 184 ~--------~~~~~~~~~~ip~drillETD~ 206 (255)
T PF01026_consen 184 N--------SKKVRELIKAIPLDRILLETDA 206 (255)
T ss_dssp T--------SHHHHHHHHHS-GGGEEEE-BT
T ss_pred c--------cHHHHHHHhcCChhhEEEcCCC
Confidence 1 2346677788888888887764
No 258
>PRK07094 biotin synthase; Provisional
Probab=35.79 E-value=3.6e+02 Score=24.97 Aligned_cols=122 Identities=12% Similarity=0.143 Sum_probs=63.0
Q ss_pred HHHHHHHHCCCCeEEec---CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFD---EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiD---EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~l 265 (329)
++++.+.+.|++.|.|- +|.+ .. +.+.+.++.+.+. . +. .+|++.|.. .+.+..|.+++++.+++
T Consensus 77 ~~~~~~~~~g~~~i~l~gG~~~~~----~~---~~l~~l~~~i~~~-~-~l--~i~~~~g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 77 ECAKKAYELGYRTIVLQSGEDPYY----TD---EKIADIIKEIKKE-L-DV--AITLSLGERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCC----CH---HHHHHHHHHHHcc-C-Cc--eEEEecCCCCHHHHHHHHHcCCCEEEe
Confidence 34556677899966653 2332 12 2334455555432 1 23 344444543 46889999999998776
Q ss_pred EcCCC-------------chhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 266 ENSRS-------------DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 266 E~~~~-------------~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
-.... ..+.++.+......|-.+..|++=.. .-|+.|++.+.++.+. .++.+.+.++
T Consensus 146 glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl--pget~ed~~~~l~~l~-~l~~~~v~~~ 215 (323)
T PRK07094 146 RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGL--PGQTLEDLADDILFLK-ELDLDMIGIG 215 (323)
T ss_pred ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEEC--CCCCHHHHHHHHHHHH-hCCCCeeeee
Confidence 43221 12222333221112323333433221 1478888888777765 4555555443
No 259
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=35.60 E-value=3.6e+02 Score=24.94 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCC-ChHHHHHHHHHHHHHHcCCCCCceeEEe----------eccc
Q 020229 178 LSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDL-DSHKLHAFIHSFRITNCGVQDTTQIHTH----------MCYS 246 (329)
Q Consensus 178 ~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~lH----------~C~G 246 (329)
.+.++.-.+.+.++++++..+|+..|-+.--+ .... ..+.++.+.+++|++.+. + .+.+.+= ..||
T Consensus 79 ~e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~-~~~~~~e~~l~~i~~~Ln~~~~~-~-~v~i~~e~~agegs~~g~~F~ 155 (280)
T COG0648 79 KEKVEKSIERLIDEIDRCEQLGAKLLVFHPGS-YLGQGKEEGLNRIAEALNELLEE-E-GVIILLENTAGEGSGKGTQFG 155 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-ccCCCHHHHHHHHHHHHHHHhhc-c-CCeEEEEEeccccCccccchh
Confidence 47788888999999999999999998888433 3333 345568888999988864 2 1222221 2233
Q ss_pred ChHHHHHHHHhCCCcEEEEEcC
Q 020229 247 NFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 247 n~~~i~~~l~~~~~d~~~lE~~ 268 (329)
....+++.+.+.+-=+..+|++
T Consensus 156 ~L~eii~~~~~~~~igvCiDtc 177 (280)
T COG0648 156 ELAEIIDLIEEKERIGVCIDTC 177 (280)
T ss_pred hHHHHHHhhcccCceEEEEEch
Confidence 4445666666665445777765
No 260
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=35.37 E-value=3.5e+02 Score=24.63 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhC--CCcEEE
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM--DADVIT 264 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~--~~d~~~ 264 (329)
...+.++++.++|+++|-|---+ ...++.+.+..+++.+.+.. +.++.+-+.. + .++..-++. +.+.+.
T Consensus 26 ~i~~~A~~~~~~GAdiIDVg~~~----~~~eE~~r~~~~v~~l~~~~--~~plsIDT~~--~-~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 26 FIQKLALKQAEAGADYLDVNAGT----AVEEEPETMEWLVETVQEVV--DVPLCIDSPN--P-AAIEAGLKVAKGPPLIN 96 (261)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC----CchhHHHHHHHHHHHHHHhC--CCCEEEeCCC--H-HHHHHHHHhCCCCCEEE
Confidence 34555677889999999887321 11344556666666665433 2566555552 2 345555554 555432
Q ss_pred EEcCC-C--chhHHHHhhhcccCCCeeeeeeecCCCCCCCCHH----HHHHHHHHHHHhcC--CCceEeCCCCC
Q 020229 265 IENSR-S--DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTE----EIADRINKMLAVLE--TNILWVNPDLH 329 (329)
Q Consensus 265 lE~~~-~--~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e----~i~~ri~~a~~~v~--~~~l~ispdCG 329 (329)
+... . ..+..+.+++ .+..+++=..+.+. .-.+.+ ...+.+.++. ..| ++++++.|.-|
T Consensus 97 -sIs~~~~~~~~~~~l~~~---~g~~vv~m~~~~~g-~P~t~~~~~~~l~~~v~~a~-~~GI~~~~IilDPgi~ 164 (261)
T PRK07535 97 -SVSAEGEKLEVVLPLVKK---YNAPVVALTMDDTG-IPKDAEDRLAVAKELVEKAD-EYGIPPEDIYIDPLVL 164 (261)
T ss_pred -eCCCCCccCHHHHHHHHH---hCCCEEEEecCCCC-CCCCHHHHHHHHHHHHHHHH-HcCCCHhHEEEeCCCC
Confidence 2111 1 2345555654 23333332333221 122333 3344444443 334 48999988654
No 261
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=34.89 E-value=54 Score=26.57 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=18.4
Q ss_pred CceeEEeecccChHH-HHHHHHhCCCcEE
Q 020229 236 TTQIHTHMCYSNFND-IIHSIIDMDADVI 263 (329)
Q Consensus 236 ~~~i~lH~C~Gn~~~-i~~~l~~~~~d~~ 263 (329)
...++||.| |+.++ ++..+.+-++..+
T Consensus 101 ~~~vgLHaC-G~Ls~~~l~~~~~~~~~~l 128 (141)
T PF13679_consen 101 DILVGLHAC-GDLSDRALRLFIRPNARFL 128 (141)
T ss_pred eEEEEeecc-cchHHHHHHHHHHcCCCEE
Confidence 578999999 99864 4555555555544
No 262
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.82 E-value=3.2e+02 Score=24.80 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHHHHHCCCCeEEec--CCccCCCCC-hHHHHHHHHHHHHHHcCCCCCceeEEeeccc----ChHHHHHHHHhCCCcEEE
Q 020229 192 ISELKAAGASWIQFD--EPLLVMDLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYS----NFNDIIHSIIDMDADVIT 264 (329)
Q Consensus 192 i~~l~~aG~~~IQiD--EP~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G----n~~~i~~~l~~~~~d~~~ 264 (329)
++.+.++|++.|.|+ -|....... ....+.+.+.+..+.+.. +.++.+-+=.+ +..+++..+.+.++|.+.
T Consensus 117 a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~ 194 (289)
T cd02810 117 ARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDLEDIVELAKAAERAGADGLT 194 (289)
T ss_pred HHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 445667799999987 344221100 011122233334444333 24455544322 234678888899999999
Q ss_pred EE
Q 020229 265 IE 266 (329)
Q Consensus 265 lE 266 (329)
+-
T Consensus 195 ~~ 196 (289)
T cd02810 195 AI 196 (289)
T ss_pred EE
Confidence 75
No 263
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.61 E-value=4.3e+02 Score=25.54 Aligned_cols=138 Identities=12% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCeEEecC--CccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHH
Q 020229 181 LPKILPIYKEVISELKAA--GASWIQFDE--PLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSI 255 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~a--G~~~IQiDE--P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l 255 (329)
.++.++++.++++..... +++.|.|-. |++ ++...+..+.+.+.+.. .+..+..+.+-+-.++. .+.+..+
T Consensus 46 ~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~---l~~~~l~~ll~~i~~~~-~~~~~~eit~E~~P~~lt~e~l~~l 121 (400)
T PRK07379 46 IEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSL---LSVEQLERILTTLDQRF-GIAPDAEISLEIDPGTFDLEQLQGY 121 (400)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCcccc---CCHHHHHHHHHHHHHhC-CCCCCCEEEEEeCCCcCCHHHHHHH
Confidence 344555566666543322 455666643 442 24556655555554433 23323444443322333 3678889
Q ss_pred HhCCCcEEEEEcCCCchhHHHHhhhcc-------------cCC-CeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 020229 256 IDMDADVITIENSRSDEKLLSVFREGV-------------KYG-AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI 321 (329)
Q Consensus 256 ~~~~~d~~~lE~~~~~~~~l~~l~~~~-------------~~~-~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~ 321 (329)
.+++++.+++-.-....+.++.+.+.. ..+ ..+.+-+|- -.--+|.|++.+-++.+.+ +++++
T Consensus 122 ~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~--GlPgqt~e~~~~tl~~~~~-l~p~~ 198 (400)
T PRK07379 122 RSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLIS--GLPHQTLEDWQASLEAAIA-LNPTH 198 (400)
T ss_pred HHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeec--CCCCCCHHHHHHHHHHHHc-CCCCE
Confidence 999999999886443333333332200 011 112222221 1224899999998888865 56677
Q ss_pred eEeC
Q 020229 322 LWVN 325 (329)
Q Consensus 322 l~is 325 (329)
+-+.
T Consensus 199 is~y 202 (400)
T PRK07379 199 LSCY 202 (400)
T ss_pred EEEe
Confidence 6553
No 264
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=34.60 E-value=3.4e+02 Score=24.27 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC-hHHHHHHHHHHHHHHcCCCCCceeEEeeccc------C-hHH
Q 020229 179 SLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYS------N-FND 250 (329)
Q Consensus 179 ~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G------n-~~~ 250 (329)
+..+.-.+.+++.++...+.||++|.+--... ...+ .+.++.+.+.++.+.+. +.++.+.+..+.+ + +..
T Consensus 77 ~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~-~~~~~e~~~~~~~~~l~~l~~~-~~gv~l~lEn~~~~~~~~~~~~~~ 154 (273)
T smart00518 77 EKVEKSIERLIDEIKRCEELGIKALVFHPGSY-LKQSKEEALNRIIESLNEVIDE-TKGVVILLETTAGKGSQIGSTFED 154 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-cCCCHHHHHHHHHHHHHHHHhc-cCCcEEEEeccCCCCCccCCCHHH
Confidence 34455556777778888889999888853322 1112 34456777888887763 3346777766532 2 223
Q ss_pred HHHHHHhCCC---cEEEEEcCC
Q 020229 251 IIHSIIDMDA---DVITIENSR 269 (329)
Q Consensus 251 i~~~l~~~~~---d~~~lE~~~ 269 (329)
+...+..++- =++.+|...
T Consensus 155 ~~~ll~~v~~~~~~g~~lD~gH 176 (273)
T smart00518 155 LKEIIDLIKELDRIGVCIDTCH 176 (273)
T ss_pred HHHHHHhcCCCCCeEEEEEccc
Confidence 3344433332 366777653
No 265
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.19 E-value=3.7e+02 Score=24.55 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHH--------------HHHHHHHHHHcCCCCCceeEEeecccCh------H
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLH--------------AFIHSFRITNCGVQDTTQIHTHMCYSNF------N 249 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~lH~C~Gn~------~ 249 (329)
+.+++|.+.|+++|.|-=|.--.-.+...++ .+.+.+.++.+.. +.++++-+|+ |. +
T Consensus 33 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~--~~p~vlm~Y~-N~i~~~G~e 109 (263)
T CHL00200 33 KALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEI--KAPIVIFTYY-NPVLHYGIN 109 (263)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC--CCCEEEEecc-cHHHHhCHH
Confidence 3456788999999999866622111222221 1222333333222 3677777873 42 4
Q ss_pred HHHHHHHhCCCcEEEEE
Q 020229 250 DIIHSIIDMDADVITIE 266 (329)
Q Consensus 250 ~i~~~l~~~~~d~~~lE 266 (329)
+.+....++++|++-+-
T Consensus 110 ~F~~~~~~aGvdgviip 126 (263)
T CHL00200 110 KFIKKISQAGVKGLIIP 126 (263)
T ss_pred HHHHHHHHcCCeEEEec
Confidence 56777778888888765
No 266
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=33.96 E-value=3.5e+02 Score=24.24 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHCCCCeEEecCCccCC-----CCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHH---HHHHHhCCCcEE
Q 020229 192 ISELKAAGASWIQFDEPLLVM-----DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDI---IHSIIDMDADVI 263 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i---~~~l~~~~~d~~ 263 (329)
.+.+.++|++.|.+-.-..+. |...-.++.+......+..........=.-..||+...+ ...+.+.+++++
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv 101 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGI 101 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Q ss_pred EEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCC-CceEeCCCC
Q 020229 264 TIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET-NILWVNPDL 328 (329)
Q Consensus 264 ~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~-~~l~ispdC 328 (329)
.+| ++...-..=.+....+-++|+-.++|+.+.+.... .++.|..-|
T Consensus 102 ~iE------------------D~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART 149 (243)
T cd00377 102 HIE------------------DQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART 149 (243)
T ss_pred EEe------------------cCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc
No 267
>PLN02803 beta-amylase
Probab=33.83 E-value=1.5e+02 Score=30.07 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCc-cCCCCChHHH--HHHHHHHHHHHc-CCCCCceeEEeecccChHH--------HHH
Q 020229 186 PIYKEVISELKAAGASWIQFDEPL-LVMDLDSHKL--HAFIHSFRITNC-GVQDTTQIHTHMCYSNFND--------IIH 253 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~i~lH~C~Gn~~~--------i~~ 253 (329)
+++...+++|+.+|++-|-+|=-. +...-.+..+ ..+.+.++.+.+ +++-.+-+..|-|-||..+ -.-
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~ 186 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVL 186 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHH
Confidence 356777889999999999999322 2211122222 344555554443 5553345567999888642 122
Q ss_pred HHHhCCCcEEEEEcC
Q 020229 254 SIIDMDADVITIENS 268 (329)
Q Consensus 254 ~l~~~~~d~~~lE~~ 268 (329)
.+.+.+-|.++-|-.
T Consensus 187 e~~~~~pDi~ftDr~ 201 (548)
T PLN02803 187 EEMSKNPDLVYTDRS 201 (548)
T ss_pred HhhhcCCCceEecCC
Confidence 345566777766643
No 268
>PLN02705 beta-amylase
Probab=33.76 E-value=1.5e+02 Score=30.59 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCc-cCCCCChHHH--HHHHHHHHHHHc-CCCCCceeEEeecccChH
Q 020229 186 PIYKEVISELKAAGASWIQFDEPL-LVMDLDSHKL--HAFIHSFRITNC-GVQDTTQIHTHMCYSNFN 249 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~i~lH~C~Gn~~ 249 (329)
+++...+++|+.+|++-|-+|=-. ++..-.+..+ ..+.++++.+.+ +++-.+.+..|-|-||..
T Consensus 268 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVG 335 (681)
T PLN02705 268 EGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNAS 335 (681)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCC
Confidence 467778899999999999999432 2211122222 445555555543 555334556799988864
No 269
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=33.54 E-value=3.4e+02 Score=24.05 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCCeEEecCCc
Q 020229 187 IYKEVISELKAAGASWIQFDEPL 209 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~ 209 (329)
...+++++|.++||++|.+|...
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~ 108 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATD 108 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeeccc
Confidence 45567889999999999999543
No 270
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=33.35 E-value=3.6e+02 Score=24.23 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=6.5
Q ss_pred HHHHHHCCCCeEEe
Q 020229 192 ISELKAAGASWIQF 205 (329)
Q Consensus 192 i~~l~~aG~~~IQi 205 (329)
++.+.++|.+.|++
T Consensus 16 l~~a~~~G~d~vEl 29 (279)
T cd00019 16 LKRAKEIGFDTVAM 29 (279)
T ss_pred HHHHHHcCCCEEEE
Confidence 33444455554444
No 271
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=33.15 E-value=3.9e+02 Score=24.52 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=59.5
Q ss_pred HHHCCCCeEEecCCccCCCC---C--hHHHHHHHHHHHHHHcCCCCCceeEEeecccChH---H----HHHHHHhCCCcE
Q 020229 195 LKAAGASWIQFDEPLLVMDL---D--SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---D----IIHSIIDMDADV 262 (329)
Q Consensus 195 l~~aG~~~IQiDEP~l~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~----i~~~l~~~~~d~ 262 (329)
+.++|++.|-+-+-.....+ + +-.++.+....+.+.++.+ ...++.-+-||.|. . ....+.+.++++
T Consensus 31 ~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~-~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~a 109 (263)
T TIGR00222 31 FADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAP-NCLIVTDLPFMSYATPEQALKNAARVMQETGANA 109 (263)
T ss_pred HHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-CceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeE
Confidence 45789998888765432221 1 1233555555566666655 23444444455442 2 333344589999
Q ss_pred EEEEcCCCchhHHHHhhhcccCCCeee--eeeecCCCC-------CCCCHHHHHHHHHHHHHh
Q 020229 263 ITIENSRSDEKLLSVFREGVKYGAGIG--PGVYDIHSP-------RIPSTEEIADRINKMLAV 316 (329)
Q Consensus 263 ~~lE~~~~~~~~l~~l~~~~~~~~~i~--~Gvvd~~~~-------~~e~~e~i~~ri~~a~~~ 316 (329)
+.+|=.....+..+.+.+ .+-.+. +|+.+..-. .--+.++..+.+++|..+
T Consensus 110 VkiEgg~~~~~~i~~l~~---~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~ 169 (263)
T TIGR00222 110 VKLEGGEWLVETVQMLTE---RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALAL 169 (263)
T ss_pred EEEcCcHhHHHHHHHHHH---CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHH
Confidence 999954222233344442 122233 455443211 123455555556555444
No 272
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=33.03 E-value=4.2e+02 Score=24.87 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=42.8
Q ss_pred HHHHHHCCCCeEEecCCccC--CCCChHHH-HHHHHHHHHHHcCCCCCceeEEeec--ccChHHHHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLV--MDLDSHKL-HAFIHSFRITNCGVQDTTQIHTHMC--YSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~lH~C--~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
++.+.++|+++|+|.=-... .+...... +.+.+.+..+.+..+ .++.+-+= ..+...+...+.+.++|++.+-
T Consensus 118 a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~--iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 118 ARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT--IPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC--CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 44556789999999842211 11111111 233455555554443 45555543 2344567888889999999876
Q ss_pred cC
Q 020229 267 NS 268 (329)
Q Consensus 267 ~~ 268 (329)
..
T Consensus 196 nt 197 (325)
T cd04739 196 NR 197 (325)
T ss_pred cC
Confidence 43
No 273
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=32.60 E-value=4.2e+02 Score=25.01 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--eEEecCCccCCCC--Ch--HHHHHHHHHHHHHHcC---CCCCceeEEeecccC
Q 020229 177 LLSLLPKILPIYKEVISELKAAGAS--WIQFDEPLLVMDL--DS--HKLHAFIHSFRITNCG---VQDTTQIHTHMCYSN 247 (329)
Q Consensus 177 ~~~l~~~la~~~~~~i~~l~~aG~~--~IQiDEP~l~~~~--~~--~~~~~~~~~~~~~~~~---~~~~~~i~lH~C~Gn 247 (329)
.+.+-.++-+--+..+..+.+.|+. +||+-.-+=...+ +. ..++.+...+|+...+ ++++.+|.||..-|-
T Consensus 147 fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~ 226 (403)
T COG3867 147 FEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGE 226 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCC
Confidence 3555556666667888899999987 8999743312111 11 1333333333333322 344789999998653
Q ss_pred ----hHHHHHHHHhC--CCcEEEEEcC
Q 020229 248 ----FNDIIHSIIDM--DADVITIENS 268 (329)
Q Consensus 248 ----~~~i~~~l~~~--~~d~~~lE~~ 268 (329)
|+-+++.|-+- ++|+|..-|.
T Consensus 227 ~n~~y~~~fd~ltk~nvdfDVig~SyY 253 (403)
T COG3867 227 NNSLYRWIFDELTKRNVDFDVIGSSYY 253 (403)
T ss_pred CCchhhHHHHHHHHcCCCceEEeeecc
Confidence 45678888654 5688887765
No 274
>PRK06801 hypothetical protein; Provisional
Probab=32.43 E-value=3.6e+02 Score=24.94 Aligned_cols=74 Identities=7% Similarity=0.141 Sum_probs=47.8
Q ss_pred HHHHHHCCCC-eEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCC
Q 020229 192 ISELKAAGAS-WIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 270 (329)
Q Consensus 192 i~~l~~aG~~-~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~ 270 (329)
+++..+.+.. +||+.+....+ .. ++.+....+.+.+..+ +++.||.=-|..-+.+..-++.+++.+-+|-+..
T Consensus 35 i~AAe~~~~PvIl~~~~~~~~~-~~---~~~~~~~~~~~a~~~~--vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l 108 (286)
T PRK06801 35 FAAAKQERSPFIINIAEVHFKY-IS---LESLVEAVKFEAARHD--IPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTL 108 (286)
T ss_pred HHHHHHHCCCEEEEeCcchhhc-CC---HHHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCC
Confidence 3445555666 89998766543 22 2233444444555443 6889998877555566677788999999997764
Q ss_pred c
Q 020229 271 D 271 (329)
Q Consensus 271 ~ 271 (329)
+
T Consensus 109 ~ 109 (286)
T PRK06801 109 E 109 (286)
T ss_pred C
Confidence 3
No 275
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=32.38 E-value=4.6e+02 Score=25.17 Aligned_cols=125 Identities=17% Similarity=0.263 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 186 PIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
++..+++++|.++||++|-+-=|... . .+++..+.+..+ .+++--+=| |+. ++-.-.+.++|.+-+
T Consensus 42 ~atv~Qi~~L~~aGceiVRvav~~~~------~----a~al~~I~~~~~--iPlvADIHF-d~~-lAl~a~~~G~~~iRI 107 (360)
T PRK00366 42 EATVAQIKRLARAGCEIVRVAVPDME------A----AAALPEIKKQLP--VPLVADIHF-DYR-LALAAAEAGADALRI 107 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCHH------H----HHhHHHHHHcCC--CCEEEecCC-CHH-HHHHHHHhCCCEEEE
Confidence 35566789999999999999866522 2 334455555554 455444432 232 233334567777754
Q ss_pred EcCC--C-chhHHHHhhhcccCCCeeeeeeecCCCCC--------CCCHHHHHHHHHHH---HHhcCCCceEeC
Q 020229 266 ENSR--S-DEKLLSVFREGVKYGAGIGPGVYDIHSPR--------IPSTEEIADRINKM---LAVLETNILWVN 325 (329)
Q Consensus 266 E~~~--~-~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~--------~e~~e~i~~ri~~a---~~~v~~~~l~is 325 (329)
-=-+ . ..+..+++..-...+..+=+|| ++.|.. -.++|-+..-..+- ++.++.+++.+|
T Consensus 108 NPGNig~~~~~v~~vv~~ak~~~ipIRIGv-N~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS 180 (360)
T PRK00366 108 NPGNIGKRDERVREVVEAAKDYGIPIRIGV-NAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKIS 180 (360)
T ss_pred CCCCCCchHHHHHHHHHHHHHCCCCEEEec-CCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 4222 1 1222233322123466677777 444422 13665544443333 334456777765
No 276
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.21 E-value=3.4e+02 Score=25.63 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHH--HhCCCcEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSI--IDMDADVITI 265 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l--~~~~~d~~~l 265 (329)
.+.++.+.++|++.|.|-|..-. +.+..+..+..++... ++++.++++|.= -|.. .+...+ .+.+++.+.-
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~--~~P~~v~~~v~~l~~~---l~~~i~ig~H~H-nnlGla~ANslaAi~aGa~~iD~ 219 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGA--MLPDDVRDRVRALKAV---LKPETQVGFHAH-HNLSLAVANSIAAIEAGATRIDA 219 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCC--CCHHHHHHHHHHHHHh---CCCCceEEEEeC-CCCchHHHHHHHHHHhCCCEEEe
Confidence 34456677889999999887744 3466665555555443 333356666654 3322 122333 3567776433
No 277
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=32.08 E-value=32 Score=28.47 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=20.9
Q ss_pred CeeeeeeecCCCC-CCCCHHHHHHHHHHHHHhcC
Q 020229 286 AGIGPGVYDIHSP-RIPSTEEIADRINKMLAVLE 318 (329)
Q Consensus 286 ~~i~~Gvvd~~~~-~~e~~e~i~~ri~~a~~~v~ 318 (329)
..-++||||..++ -+|+.|+++.|- +.++.+|
T Consensus 120 GrgvlGVvDG~~p~GvE~eed~~~Rk-~lLr~iG 152 (155)
T PF04008_consen 120 GRGVLGVVDGFSPKGVETEEDIKERK-ELLRKIG 152 (155)
T ss_dssp EEEEEEEEESS--SEE--HHHHHHHH-HHHHHTT
T ss_pred CcEEEEEEcCCCCCCccCHHHHHHHH-HHHHHhC
Confidence 4678999999877 599999998874 4445554
No 278
>PRK10508 hypothetical protein; Provisional
Probab=32.02 E-value=42 Score=31.80 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceEeCCCC
Q 020229 299 RIPSTEEIADRINKMLAVLETNILWVNPDL 328 (329)
Q Consensus 299 ~~e~~e~i~~ri~~a~~~v~~~~l~ispdC 328 (329)
.++|||+|++++++..+..+.+++++.++|
T Consensus 284 ivGtpe~V~~kl~~l~~~~g~del~~~~~~ 313 (333)
T PRK10508 284 LVGDKAKVRHGLQSILRETQADEIMVNGQI 313 (333)
T ss_pred EEeCHHHHHHHHHHHHHHHCcCEEEEECCC
Confidence 479999999999999999999999987765
No 279
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.86 E-value=3.4e+02 Score=26.10 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=26.5
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC 244 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C 244 (329)
++.+.++|++.|.|-|..-. +.+..+..++..+.+.. + .++.+|+-
T Consensus 151 ~~~~~~~Ga~~I~l~DT~G~--~~P~~v~~lv~~l~~~~-~----~~l~~H~H 196 (378)
T PRK11858 151 AKAAEEAGADRVRFCDTVGI--LDPFTMYELVKELVEAV-D----IPIEVHCH 196 (378)
T ss_pred HHHHHhCCCCEEEEeccCCC--CCHHHHHHHHHHHHHhc-C----CeEEEEec
Confidence 34556789999999887733 34555544444443332 2 34555544
No 280
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=31.61 E-value=3.9e+02 Score=24.10 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=47.4
Q ss_pred HHHCCCCeEEec-CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchh
Q 020229 195 LKAAGASWIQFD-EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEK 273 (329)
Q Consensus 195 l~~aG~~~IQiD-EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~ 273 (329)
+..+|.|+|.|| |... ++.+.+..+..+.+ .. +....+=+...+. ..+...++++++++-+.+.++.++
T Consensus 29 ~a~~G~D~v~iD~EHg~---~~~~~~~~~~~a~~----~~--g~~~~VRvp~~~~-~~i~r~LD~Ga~gIivP~v~taee 98 (249)
T TIGR03239 29 LGLAGFDWLLLDGEHAP---NDVLTFIPQLMALK----GS--ASAPVVRPPWNEP-VIIKRLLDIGFYNFLIPFVESAEE 98 (249)
T ss_pred HHhcCCCEEEEecccCC---CCHHHHHHHHHHHh----hc--CCCcEEECCCCCH-HHHHHHhcCCCCEEEecCcCCHHH
Confidence 456899999999 4442 23344433333321 12 1333556664444 467888999999999999988777
Q ss_pred HHHHhh
Q 020229 274 LLSVFR 279 (329)
Q Consensus 274 ~l~~l~ 279 (329)
..+.+.
T Consensus 99 a~~~v~ 104 (249)
T TIGR03239 99 AERAVA 104 (249)
T ss_pred HHHHHH
Confidence 666664
No 281
>PLN02801 beta-amylase
Probab=31.50 E-value=1.8e+02 Score=29.29 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCeEEecCCc-cCCCCChHH--HHHHHHHHHHHHc-CCCCCceeEEeecccChHH--------HHHH
Q 020229 187 IYKEVISELKAAGASWIQFDEPL-LVMDLDSHK--LHAFIHSFRITNC-GVQDTTQIHTHMCYSNFND--------IIHS 254 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~i~lH~C~Gn~~~--------i~~~ 254 (329)
+++..+++|+.+|++-|-+|==. +...-.+.. ...+.+.++.+.+ +++-.+-+..|-|-||..+ -.-.
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~ 117 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRD 117 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHH
Confidence 56777889999999999999322 221112222 2344555554442 5553345667999888642 1122
Q ss_pred HHhCCCcEEEEEc
Q 020229 255 IIDMDADVITIEN 267 (329)
Q Consensus 255 l~~~~~d~~~lE~ 267 (329)
+.+.+-|.++-|-
T Consensus 118 ~g~~~pDi~ftDr 130 (517)
T PLN02801 118 VGDSDPDIFYTNR 130 (517)
T ss_pred hhccCCCceeecC
Confidence 3445666666553
No 282
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=31.42 E-value=5.2e+02 Score=25.50 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=60.4
Q ss_pred HHHHHHHHHHC--CCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-HHHHHHHHhCCCcEEE
Q 020229 188 YKEVISELKAA--GASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVIT 264 (329)
Q Consensus 188 ~~~~i~~l~~a--G~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-~~i~~~l~~~~~d~~~ 264 (329)
+.++++.+.+. |++.|.+.+..+..+ ...+.++.+.+.. . +..... .++.+. .++++.|.++++..++
T Consensus 232 V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~--~~~~~~l~~~l~~----~--~i~~~~-~~~~~~~~e~l~~l~~aG~~~v~ 302 (472)
T TIGR03471 232 VIEEVKYALENFPEVREFFFDDDTFTDD--KPRAEEIARKLGP----L--GVTWSC-NARANVDYETLKVMKENGLRLLL 302 (472)
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCCC--HHHHHHHHHHHhh----c--CceEEE-EecCCCCHHHHHHHHHcCCCEEE
Confidence 44445555553 788788777665532 2333333333221 1 122211 112233 3688999999998877
Q ss_pred EEcCCCchhHHHHhhh-------------cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEe
Q 020229 265 IENSRSDEKLLSVFRE-------------GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWV 324 (329)
Q Consensus 265 lE~~~~~~~~l~~l~~-------------~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~i 324 (329)
+=.-+...+.++.+++ ....|-.+...+|=. .--||.|++.+.++-+.+ ++.+.+.+
T Consensus 303 iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiG--lPget~e~~~~ti~~~~~-l~~~~~~~ 372 (472)
T TIGR03471 303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILG--LPGETRETIRKTIDFAKE-LNPHTIQV 372 (472)
T ss_pred EcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEe--CCCCCHHHHHHHHHHHHh-cCCCceee
Confidence 5543322222222221 001122232232211 124889999888777754 45554433
No 283
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=31.40 E-value=2e+02 Score=27.50 Aligned_cols=70 Identities=7% Similarity=0.122 Sum_probs=43.1
Q ss_pred HHHCCCCeEEecCCccCCCCC---hHHHHHHHHHHHHHHcCCCCCceeEEeec-ccChHHHHHHHHhCCCcEEEEE
Q 020229 195 LKAAGASWIQFDEPLLVMDLD---SHKLHAFIHSFRITNCGVQDTTQIHTHMC-YSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 195 l~~aG~~~IQiDEP~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~lH~C-~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
....+++.++|.=+....... ...++.+.+.++.+.+.++ .+|++..+ +|.....+..+.+.++|++.+-
T Consensus 144 ~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~--vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 144 VEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALP--VPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhC--CCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 334567778887433222111 1234434456666666553 67888876 3455577888899999999984
No 284
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.24 E-value=2.2e+02 Score=28.72 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH--HHHHHHHhCCCcEEEE
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN--DIIHSIIDMDADVITI 265 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~--~i~~~l~~~~~d~~~l 265 (329)
+.+.+++|.++|+++|.|| .+..-+... .+.++++.+..+.+..+ .+ ||.. .-...+.++++|++-+
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd---~a~g~~~~~----~~~i~~ir~~~~~~~~V---~a-GnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 243 YAERVPALVEAGADVLCID---SSEGYSEWQ----KRTLDWIREKYGDSVKV---GA-GNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred HHHHHHHHHHhCCCeEeec---CcccccHHH----HHHHHHHHHhCCCCceE---Ee-ccccCHHHHHHHHHcCCCEEEE
Confidence 3466788999999999999 222222222 34445555544422333 34 7753 3567778899999866
No 285
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=31.22 E-value=5.7e+02 Score=25.87 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCC-CCCCCHHHHHHHHHHHHHhcCC--CceEeCC
Q 020229 250 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLET--NILWVNP 326 (329)
Q Consensus 250 ~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~-~~~e~~e~i~~ri~~a~~~v~~--~~l~isp 326 (329)
.++....+.++|.+.+|+.... +..+.+....+.+..+++ |.++ ....+.+++.+.++++.+. +. =++.++|
T Consensus 101 ~ll~~~~~~~~d~iDiEl~~~~-~~~~~~~~~~~~~~~vI~---S~H~f~~tP~~~el~~~~~~~~~~-gaDi~Kia~~~ 175 (529)
T PLN02520 101 DALRLAMELGADYVDVELKVAH-EFINSISGKKPEKCKVIV---SSHNYENTPSVEELGNLVARIQAT-GADIVKIATTA 175 (529)
T ss_pred HHHHHHHHhCCCEEEEEcCCch-hHHHHHHhhhhcCCEEEE---EecCCCCCCCHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 4566667788999999987543 333333321112223322 4443 2345568888888887543 33 3444455
Q ss_pred C
Q 020229 327 D 327 (329)
Q Consensus 327 d 327 (329)
.
T Consensus 176 ~ 176 (529)
T PLN02520 176 L 176 (529)
T ss_pred C
Confidence 4
No 286
>PLN02905 beta-amylase
Probab=31.03 E-value=1.7e+02 Score=30.26 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCc-cCCCCChHHH--HHHHHHHHHHHc-CCCCCceeEEeecccChHH--------HHH
Q 020229 186 PIYKEVISELKAAGASWIQFDEPL-LVMDLDSHKL--HAFIHSFRITNC-GVQDTTQIHTHMCYSNFND--------IIH 253 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~i~lH~C~Gn~~~--------i~~ 253 (329)
+++...+++|+.+|++-|-+|=-. +...-.+..+ ..+.+.++.+.+ +++-.+-+..|-|-||..+ -.-
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~ 365 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVA 365 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHH
Confidence 457778899999999999999432 2211122222 445555555542 5553345567999888642 112
Q ss_pred HHHhCCCcEEEEEcC
Q 020229 254 SIIDMDADVITIENS 268 (329)
Q Consensus 254 ~l~~~~~d~~~lE~~ 268 (329)
.+.+.+-|.++-|-.
T Consensus 366 e~g~~nPDifftDrs 380 (702)
T PLN02905 366 EIGRSNPDIFFTDRE 380 (702)
T ss_pred HhhhcCCCceEecCC
Confidence 334556676666643
No 287
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=30.93 E-value=4.1e+02 Score=26.39 Aligned_cols=87 Identities=6% Similarity=0.033 Sum_probs=51.8
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~l~~~~~d~~~lE 266 (329)
..++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+.....+.++-|... +..+...+.+.+++-++
T Consensus 167 ~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~ 246 (450)
T cd08212 167 VYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHD 246 (450)
T ss_pred HHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHHHHHHhCCCeEeee
Confidence 3456778999999999865443333 334666777777765332112223344423343 34566678888888888
Q ss_pred cCCCchhHHHHhh
Q 020229 267 NSRSDEKLLSVFR 279 (329)
Q Consensus 267 ~~~~~~~~l~~l~ 279 (329)
+-. +...++.+.
T Consensus 247 ~~~-G~~~l~~l~ 258 (450)
T cd08212 247 LLT-GFTAIQSLA 258 (450)
T ss_pred ccc-ccchHHHHH
Confidence 655 554454544
No 288
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=30.92 E-value=4.7e+02 Score=26.23 Aligned_cols=88 Identities=5% Similarity=-0.025 Sum_probs=54.0
Q ss_pred HHHHHHCCCCeEEecCCccCCCCCh--HHHHHHHHHHHHHHcCCCCCceeEEeecccChH---HHHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDS--HKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~---~i~~~l~~~~~d~~~lE 266 (329)
+.++...|+|+|-=||+...-...+ +-+.++.++++++.+.-.+.....+.++-|+.. +..+.+.+.+.+++-++
T Consensus 189 ~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~ 268 (475)
T CHL00040 189 VYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHD 268 (475)
T ss_pred HHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 3456678999999999865444433 344667777777765332111113344423444 34666678899999998
Q ss_pred cCCCchhHHHHhh
Q 020229 267 NSRSDEKLLSVFR 279 (329)
Q Consensus 267 ~~~~~~~~l~~l~ 279 (329)
+...+...++.+.
T Consensus 269 ~~~~G~~al~~l~ 281 (475)
T CHL00040 269 YLTGGFTANTSLA 281 (475)
T ss_pred ccccccchHHHHH
Confidence 8765555555554
No 289
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=30.56 E-value=4.2e+02 Score=24.18 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=65.9
Q ss_pred HHHHHHHHHCCCCeEEecCCc---cCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPL---LVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
.+.++.|.++|++.|.+==+. ....+.+ .+.+. ..+. ... +.++..+ | .|..+ ++...+++++.+.+
T Consensus 23 ~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d--~~~~~---~~l~-~~~-~~~~~~~-~-~~~~d-v~~A~~~g~~~i~i 92 (274)
T cd07938 23 IELIDALSAAGLRRIEVTSFVSPKWVPQMAD--AEEVL---AGLP-RRP-GVRYSAL-V-PNLRG-AERALAAGVDEVAV 92 (274)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccCC--HHHHH---hhcc-cCC-CCEEEEE-C-CCHHH-HHHHHHcCcCEEEE
Confidence 344567889999999987211 0000111 11112 2221 222 3454444 5 46655 56677888998888
Q ss_pred EcCCCc-----------hhHHHHhhh----cccCCCeeeeeeecCCCCC---CCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 266 ENSRSD-----------EKLLSVFRE----GVKYGAGIGPGVYDIHSPR---IPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 266 E~~~~~-----------~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~---~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
-.+.+. .+.++...+ -...+..+..++-.+.+.. .-+++.+.+.++++.+ .|.+.+++.--
T Consensus 93 ~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT 171 (274)
T cd07938 93 FVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD-LGCDEISLGDT 171 (274)
T ss_pred EEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCC
Confidence 765332 122221111 1123555554444332211 2267888887777754 68888877644
Q ss_pred C
Q 020229 328 L 328 (329)
Q Consensus 328 C 328 (329)
.
T Consensus 172 ~ 172 (274)
T cd07938 172 I 172 (274)
T ss_pred C
Confidence 3
No 290
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.46 E-value=3e+02 Score=27.75 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=41.3
Q ss_pred ChHHHHHHHHhCCCcEEEEEcCCCc----hhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHh
Q 020229 247 NFNDIIHSIIDMDADVITIENSRSD----EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAV 316 (329)
Q Consensus 247 n~~~i~~~l~~~~~d~~~lE~~~~~----~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~ 316 (329)
+..+.++.|.+.++|.+.++.+... .+.++.+++.++.+..|+.|+| .|+|..++.++.-.+.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV-------~t~e~a~~li~aGAd~ 308 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV-------VDREGFRYLAEAGADF 308 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc-------cCHHHHHHHHHcCCCE
Confidence 4446888999999999999965443 3455555543442356777775 6677776666544443
No 291
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=30.20 E-value=3.9e+02 Score=23.66 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCC-eEEecCCccCCCCChHHH-HHHHHHHHHHHcCCCC-----CceeEEeecccChH----HHHHHHHh
Q 020229 189 KEVISELKAAGAS-WIQFDEPLLVMDLDSHKL-HAFIHSFRITNCGVQD-----TTQIHTHMCYSNFN----DIIHSIID 257 (329)
Q Consensus 189 ~~~i~~l~~aG~~-~IQiDEP~l~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~i~lH~C~Gn~~----~i~~~l~~ 257 (329)
.+.++.....|.| .+.+|++. ....+.+.. +++....+.+.+.+.. ...+.-.+.-|... .-+..|.+
T Consensus 1 E~~i~~q~~l~~Di~~~lD~~~-~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~l~gvIqGg~~~~lR~~s~~~l~~ 79 (238)
T PF01702_consen 1 EEYIEIQEALGPDIAMALDDCT-PYDASRKRAEKSVERTLRWLKECLEEHEEDKKQSLFGVIQGGDDKDLRRRSAEELSE 79 (238)
T ss_dssp HHHHHHHHHHT-SEEE--------TT--HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE--TT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEECCcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCcceeeeeCCCCCHHHHHHHHHHHHh
Q ss_pred CCCcEEEEEcCCCch------hHHHHhhhcccCCC-eeeeeeecCCCCCCCCHHHHHHHHHHHHHhcC
Q 020229 258 MDADVITIENSRSDE------KLLSVFREGVKYGA-GIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 318 (329)
Q Consensus 258 ~~~d~~~lE~~~~~~------~~l~~l~~~~~~~~-~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~ 318 (329)
-+++++.+.--.... +.++.+.+.++.++ ..++|+ .+|++|..-+..-.+.++
T Consensus 80 ~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~G~--------~~P~~i~~~v~~GvD~fD 139 (238)
T PF01702_consen 80 DGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLLGV--------GTPEEILEAVYLGVDLFD 139 (238)
T ss_dssp SS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEETTB---------SHHHHHHHHHTT--EEE
T ss_pred cccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceeccCC--------CCHHHHHHHHHcCCcEEc
No 292
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.12 E-value=1.3e+02 Score=32.72 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHHHHHCC--CCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec
Q 020229 191 VISELKAAG--ASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC 244 (329)
Q Consensus 191 ~i~~l~~aG--~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C 244 (329)
.+..+...+ ++.+.+|||+-. ++++-++.+++++..+....+ -+-|+.|+=
T Consensus 831 ALs~~~~~~~~l~~l~LDEpf~~--LD~e~l~~l~~~l~~i~~~~~-qiiIISH~e 883 (908)
T COG0419 831 ALSDLLQGRARLELLFLDEPFGT--LDEERLEKLAEILEELLSDGR-QIIIISHVE 883 (908)
T ss_pred HHHHHHhcccCCCeeEeeCCCCC--CCHHHHHHHHHHHHHHHhcCC-eEEEEeChH
Confidence 344455566 899999999966 446777888888888887654 245555754
No 293
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=30.08 E-value=4.6e+02 Score=24.47 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=39.3
Q ss_pred chhHHHHhhhcccCCCeeeeeeecCC--CCCCCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 271 DEKLLSVFREGVKYGAGIGPGVYDIH--SPRIPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 271 ~~~~l~~l~~~~~~~~~i~~Gvvd~~--~~~~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
..+.++.+.+ .|..+++-.++.. .....+.+++.+.|+-..+.+|.+.+.+.+|
T Consensus 209 tD~~i~~ia~---~GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsD 264 (309)
T cd01301 209 TDAQLKAIAE---TGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSD 264 (309)
T ss_pred CHHHHHHHHH---cCCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcc
Confidence 3455666653 3566665555442 2246799999999999999999999999887
No 294
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=30.04 E-value=4.2e+02 Score=23.93 Aligned_cols=98 Identities=13% Similarity=0.280 Sum_probs=51.6
Q ss_pred HHHHHHCCCCeEEecCCccCCCCC--------hHHHHHHHHHHHHHHcCCCCCceeEEeec----ccChH---HHHHHHH
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLD--------SHKLHAFIHSFRITNCGVQDTTQIHTHMC----YSNFN---DIIHSII 256 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~lH~C----~Gn~~---~i~~~l~ 256 (329)
++.+.+++++++.+| +..|.+ +...+.+...+..+.+. ..+++-|+- +|... ..++.|.
T Consensus 103 ~eklk~~~vdvvsLD---fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~---~irvvpHitiGL~~gki~~e~kaIdiL~ 176 (275)
T COG1856 103 LEKLKEELVDVVSLD---FVGDNDVIKRVYKLPKSVEDYLRSLLLLKEN---GIRVVPHITIGLDFGKIHGEFKAIDILV 176 (275)
T ss_pred HHHHHHhcCcEEEEe---ecCChHHHHHHHcCCccHHHHHHHHHHHHHc---CceeceeEEEEeccCcccchHHHHHHHh
Confidence 467888999999998 222211 00111122223333321 122333433 33332 4678888
Q ss_pred hCCCcEEEEEcC---------C----CchhHHHHhhh---cccCCCeeeeeeecCCC
Q 020229 257 DMDADVITIENS---------R----SDEKLLSVFRE---GVKYGAGIGPGVYDIHS 297 (329)
Q Consensus 257 ~~~~d~~~lE~~---------~----~~~~~l~~l~~---~~~~~~~i~~Gvvd~~~ 297 (329)
+-+.|++-+..- . +.++..+.+.. .++ + .+.+|..-++-
T Consensus 177 ~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~-~-pv~iGCmrP~G 231 (275)
T COG1856 177 NYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFP-N-PVSIGCMRPRG 231 (275)
T ss_pred cCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCC-C-CeeEeecCcCc
Confidence 899999988742 1 12455555542 223 3 79999987654
No 295
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.97 E-value=3.6e+02 Score=23.13 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=36.5
Q ss_pred HHHHHHHCCCCeEEecCCccCC-CCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 191 VISELKAAGASWIQFDEPLLVM-DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.++.+.++|+++||+-.-..+. .++.+....+.+ .+.... ..+.+-+= .+.+.+.+...++++|++++--.
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~----~~~~~~--~~V~v~vn-~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVA----ALPPFV--KRVGVFVN-EDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHH----hCCCCC--cEEEEEeC-CCHHHHHHHHHhcCCCEEEECCC
Confidence 4566778999999998532221 233333322211 111100 12233211 33455666667778888887644
No 296
>PLN00197 beta-amylase; Provisional
Probab=29.93 E-value=1.8e+02 Score=29.57 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHCCCCeEEecCCc-cCCCCChHHH--HHHHHHHHHHHc-CCCCCceeEEeecccChHH--------HHHH
Q 020229 187 IYKEVISELKAAGASWIQFDEPL-LVMDLDSHKL--HAFIHSFRITNC-GVQDTTQIHTHMCYSNFND--------IIHS 254 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~i~lH~C~Gn~~~--------i~~~ 254 (329)
++...+++|+.+|++-|-+|=-. +...-.+..+ ..+.+.++.+.+ +++-.+-+..|-|-||..+ -.-.
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~ 207 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVE 207 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHH
Confidence 56777889999999999999332 2211122222 344555554443 5553345566999888642 1222
Q ss_pred HHhCCCcEEEEEcC
Q 020229 255 IIDMDADVITIENS 268 (329)
Q Consensus 255 l~~~~~d~~~lE~~ 268 (329)
+.+.+-|.++-|-.
T Consensus 208 ~g~~dpDifftDr~ 221 (573)
T PLN00197 208 EVDKDPDLAYTDQW 221 (573)
T ss_pred hhccCCCceeecCC
Confidence 34556676666643
No 297
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=29.83 E-value=3.8e+02 Score=25.56 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=33.1
Q ss_pred HHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec--ccChHHHHHHH--HhCCCcEEEE
Q 020229 193 SELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC--YSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 193 ~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C--~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
+++.++|++.|.|-|..-. +.+..+..++..+. +..+ .++.+|+- +|-. +...+ .+.+++.++.
T Consensus 149 ~~~~~~Ga~~i~l~DT~G~--~~P~~v~~lv~~l~---~~~~--v~l~~H~HNd~GlA--~ANalaA~~aGa~~vd~ 216 (365)
T TIGR02660 149 EVAAEAGADRFRFADTVGI--LDPFSTYELVRALR---QAVD--LPLEMHAHNDLGMA--TANTLAAVRAGATHVNT 216 (365)
T ss_pred HHHHHcCcCEEEEcccCCC--CCHHHHHHHHHHHH---HhcC--CeEEEEecCCCChH--HHHHHHHHHhCCCEEEE
Confidence 3455689999999887743 34555543333333 3222 34455543 4422 23333 3556665543
No 298
>PRK12928 lipoyl synthase; Provisional
Probab=29.72 E-value=4.5e+02 Score=24.27 Aligned_cols=124 Identities=13% Similarity=0.212 Sum_probs=64.3
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccC----hHHHHHHHHhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSN----FNDIIHSIIDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn----~~~i~~~l~~~~~d~~~l 265 (329)
+.++++.+.|++.|-|---. ..|+.....+.+.+.++.+.+..+ .. .++.+..+ ..+.+..+.+.+.+.+.+
T Consensus 94 ~~a~~~~~~G~keivitg~~-~dDl~d~g~~~~~ell~~Ik~~~p-~~--~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~h 169 (290)
T PRK12928 94 RVAEAVAALGLRYVVLTSVA-RDDLPDGGAAHFVATIAAIRARNP-GT--GIEVLTPDFWGGQRERLATVLAAKPDVFNH 169 (290)
T ss_pred HHHHHHHHCCCCEEEEEEEe-CCcccccCHHHHHHHHHHHHhcCC-CC--EEEEeccccccCCHHHHHHHHHcCchhhcc
Confidence 44556777899977663111 112221222344555555554333 23 45655333 345678888888776664
Q ss_pred --EcC-------C---CchhHHHHhhh---c---ccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 266 --ENS-------R---SDEKLLSVFRE---G---VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 266 --E~~-------~---~~~~~l~~l~~---~---~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
|.+ + ...+.++.+.. . +.....+++|. .||.|++.+.++.+ +.++.+.+-+.
T Consensus 170 nlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-------GET~ed~~etl~~L-rel~~d~v~i~ 239 (290)
T PRK12928 170 NLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-------GETEDEVIETLRDL-RAVGCDRLTIG 239 (290)
T ss_pred cCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-------CCCHHHHHHHHHHH-HhcCCCEEEEE
Confidence 322 1 12233333332 1 11122344443 59999998888776 45666666553
No 299
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=29.47 E-value=3.3e+02 Score=27.27 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 186 PIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
+-..+.++.|.++|++.|.||--- -.. +.+.+.++.+.+..+ +.+++.=.| . ...-...|.++++|++.+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~----g~~---~~~~~~i~~i~~~~~-~~~vi~g~~-~-t~~~~~~l~~~G~d~i~v 293 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH----GHQ---VKMISAIKAVRALDL-GVPIVAGNV-V-SAEGVRDLLEAGANIIKV 293 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC----CCc---HHHHHHHHHHHHHCC-CCeEEEecc-C-CHHHHHHHHHhCCCEEEE
Confidence 345677888999999999999322 111 223445555555444 355544222 2 234577788999999984
Q ss_pred E
Q 020229 266 E 266 (329)
Q Consensus 266 E 266 (329)
=
T Consensus 294 g 294 (475)
T TIGR01303 294 G 294 (475)
T ss_pred C
Confidence 3
No 300
>PLN02591 tryptophan synthase
Probab=29.16 E-value=4.4e+02 Score=23.88 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHH--------------HHHHHHHHHHcCCCCCceeEEeecccCh------H
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLH--------------AFIHSFRITNCGVQDTTQIHTHMCYSNF------N 249 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~lH~C~Gn~------~ 249 (329)
+.+++|.++||++|.|-=|.--.-.+...++ .+.+.+.++.+.. +.++++-+| -|. +
T Consensus 20 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~--~~p~ilm~Y-~N~i~~~G~~ 96 (250)
T PLN02591 20 EALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQL--SCPIVLFTY-YNPILKRGID 96 (250)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC--CCCEEEEec-ccHHHHhHHH
Confidence 3456788999999999876622212222221 1222233333222 357777777 332 3
Q ss_pred HHHHHHHhCCCcEEEE
Q 020229 250 DIIHSIIDMDADVITI 265 (329)
Q Consensus 250 ~i~~~l~~~~~d~~~l 265 (329)
+.+..+.++++|++-+
T Consensus 97 ~F~~~~~~aGv~Gvii 112 (250)
T PLN02591 97 KFMATIKEAGVHGLVV 112 (250)
T ss_pred HHHHHHHHcCCCEEEe
Confidence 4555666677766654
No 301
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=28.86 E-value=5.1e+02 Score=24.60 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEecC--CccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh----HHH
Q 020229 178 LSLLPKILPIYKEVISELKAAGASWIQFDE--PLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF----NDI 251 (329)
Q Consensus 178 ~~l~~~la~~~~~~i~~l~~aG~~~IQiDE--P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~----~~i 251 (329)
.++.+++.+.+..+++.+....++.|.|-. |++ ++++.++.+.+.+.... +.+..+.+- .|+ .+.
T Consensus 35 ~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~---L~~~~l~~ll~~i~~~~---~~~~eitiE---~nP~~lt~e~ 105 (353)
T PRK05904 35 KKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNC---LNDQLLDILLSTIKPYV---DNNCEFTIE---CNPELITQSQ 105 (353)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccc---CCHHHHHHHHHHHHHhc---CCCCeEEEE---eccCcCCHHH
Confidence 345666677777766655323344555542 331 34556655555554432 323333322 333 357
Q ss_pred HHHHHhCCCcEEEEEcCCCchhHHHHhhhc------------c-cCC-CeeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 252 IHSIIDMDADVITIENSRSDEKLLSVFREG------------V-KYG-AGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 252 ~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~------------~-~~~-~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
+..+.+++++.+++-.-....+.++.+.+. + ..+ ..+.+-+|-. ..-+|.+++.+-++.+. .+
T Consensus 106 l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~G--lPgqt~e~~~~tl~~~~-~l 182 (353)
T PRK05904 106 INLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYC--LPILKLKDLDEVFNFIL-KH 182 (353)
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeec--CCCCCHHHHHHHHHHHH-hc
Confidence 888899999999887543322333222210 0 011 1122222222 12589999988888765 45
Q ss_pred CCCceEe
Q 020229 318 ETNILWV 324 (329)
Q Consensus 318 ~~~~l~i 324 (329)
+++++.+
T Consensus 183 ~p~~is~ 189 (353)
T PRK05904 183 KINHISF 189 (353)
T ss_pred CCCEEEE
Confidence 6676654
No 302
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.75 E-value=4.1e+02 Score=24.97 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
.+.++++.++|+++|.+|=.. ..+ .. ..+.++.+.+..| +.++++..| .+. .....+.++++|.+.+-
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~---G~~-~~---~~~~i~~ik~~~p-~v~Vi~G~v-~t~-~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAH---GHS-VY---VIEMIKFIKKKYP-NVDVIAGNV-VTA-EAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCC---CCc-HH---HHHHHHHHHHHCC-CceEEECCC-CCH-HHHHHHHhcCCCEEEEC
Confidence 455677888999999988321 111 11 1233344443333 356665555 433 35677889999999873
No 303
>PLN02161 beta-amylase
Probab=28.58 E-value=1.9e+02 Score=29.08 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCc-cCCCCChHHH--HHHHHHHHHHHc-CCCCCceeEEeecccChHH--------HHH
Q 020229 186 PIYKEVISELKAAGASWIQFDEPL-LVMDLDSHKL--HAFIHSFRITNC-GVQDTTQIHTHMCYSNFND--------IIH 253 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~-l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~i~lH~C~Gn~~~--------i~~ 253 (329)
+++...+++|+.+|++-|-+|==. +...-.+..+ ..+.+.++.+.+ +++-.+.+..|-|-||..+ -.-
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~ 196 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIR 196 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCCHHHH
Confidence 457777889999999999999322 2211122222 344555555542 5553345566999777531 122
Q ss_pred HHHhCCCcEEEEEc
Q 020229 254 SIIDMDADVITIEN 267 (329)
Q Consensus 254 ~l~~~~~d~~~lE~ 267 (329)
.+.+.+-|.++-|-
T Consensus 197 ~~g~~~pDi~ftDr 210 (531)
T PLN02161 197 EIGDVNKDIYYRDK 210 (531)
T ss_pred hhhccCCCceEEcC
Confidence 23445667666653
No 304
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=28.33 E-value=1.1e+02 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCC--CceEeCCC
Q 020229 285 GAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET--NILWVNPD 327 (329)
Q Consensus 285 ~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~--~~l~ispd 327 (329)
|..+.+|+--.....-...++|++.+.++++.+.+ .+++||.|
T Consensus 78 g~~A~Vgv~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaD 122 (158)
T TIGR02898 78 GNYAYVGVDLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVSAD 122 (158)
T ss_pred CCEEEEEEEcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 56778888433444566688999999999988544 78888865
No 305
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=28.23 E-value=4.6e+02 Score=23.82 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec--ccChHHHHHHH--HhCCCcEEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC--YSNFNDIIHSI--IDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C--~Gn~~~i~~~l--~~~~~d~~~l 265 (329)
+.++.+.++|++.|.|-|..-. +.+..+..+...+. +..+ .++++|.. +|-. +...+ .+.+++.+..
T Consensus 145 ~~~~~~~~~g~~~i~l~Dt~G~--~~P~~v~~~~~~~~---~~~~--~~i~~H~Hn~~Gla--~an~~~a~~aG~~~vd~ 215 (262)
T cd07948 145 RVYRAVDKLGVNRVGIADTVGI--ATPRQVYELVRTLR---GVVS--CDIEFHGHNDTGCA--IANAYAALEAGATHIDT 215 (262)
T ss_pred HHHHHHHHcCCCEEEECCcCCC--CCHHHHHHHHHHHH---HhcC--CeEEEEECCCCChH--HHHHHHHHHhCCCEEEE
Confidence 3445566789999998887743 34555544444443 3333 45677765 3322 23333 3678886555
Q ss_pred EcC
Q 020229 266 ENS 268 (329)
Q Consensus 266 E~~ 268 (329)
=..
T Consensus 216 s~~ 218 (262)
T cd07948 216 TVL 218 (262)
T ss_pred ecc
Confidence 443
No 306
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=28.03 E-value=5.8e+02 Score=24.95 Aligned_cols=142 Identities=12% Similarity=0.131 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCC--eEEec----CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-H
Q 020229 179 SLLPKILPIYKEVISELKAA-GAS--WIQFD----EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-D 250 (329)
Q Consensus 179 ~l~~~la~~~~~~i~~l~~a-G~~--~IQiD----EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~ 250 (329)
+..+..++++.++++..... |.+ +=+|- .|+ -++++.++.+..++.+.......+..+.+=+|.++++ .
T Consensus 62 ~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPs---lL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e 138 (416)
T COG0635 62 QPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPS---LLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAE 138 (416)
T ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccc---cCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHH
Confidence 45566777777777766543 332 22221 233 2457777777777776664344457899999988765 5
Q ss_pred HHHHHHhCCCcEEEEEcCCCchhHHHHhhhccc---------CCCeeeeeeecC---CCCCCCCHHHHHHHHHHHHHhcC
Q 020229 251 IIHSIIDMDADVITIENSRSDEKLLSVFREGVK---------YGAGIGPGVYDI---HSPRIPSTEEIADRINKMLAVLE 318 (329)
Q Consensus 251 i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~---------~~~~i~~Gvvd~---~~~~~e~~e~i~~ri~~a~~~v~ 318 (329)
.++.+.+.+++.+|+=.-.-..+.++.+..... .-+..++..|+- ...-..|.+++.+-++.|++.=
T Consensus 139 ~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~- 217 (416)
T COG0635 139 KFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELG- 217 (416)
T ss_pred HHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCC-
Confidence 788899999999998754322233333321000 011222333332 3345789999999999998654
Q ss_pred CCceEe
Q 020229 319 TNILWV 324 (329)
Q Consensus 319 ~~~l~i 324 (329)
+++|-+
T Consensus 218 pdhis~ 223 (416)
T COG0635 218 PDHLSL 223 (416)
T ss_pred CCEEEE
Confidence 566543
No 307
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=28.00 E-value=3.3e+02 Score=26.02 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHHHHCC--CCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH--HHHHHHHhCCCcEEEE
Q 020229 190 EVISELKAAG--ASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN--DIIHSIIDMDADVITI 265 (329)
Q Consensus 190 ~~i~~l~~aG--~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~--~i~~~l~~~~~d~~~l 265 (329)
+-+++|.++| +++|.||=-- .-+ +.+++.+..+.+..|. ..+ ++ ||.. +-...|.++++|++-+
T Consensus 110 er~~~L~~a~~~~d~iviD~Ah---Ghs----~~~i~~ik~ir~~~p~-~~v---ia-GNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVAN---GYS----EHFVEFVKLVREAFPE-HTI---MA-GNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCC---CcH----HHHHHHHHHHHhhCCC-CeE---EE-ecccCHHHHHHHHHcCCCEEEE
Confidence 4466777774 9999999211 111 1223444555544442 222 34 6642 3456666777777765
Q ss_pred E
Q 020229 266 E 266 (329)
Q Consensus 266 E 266 (329)
=
T Consensus 178 g 178 (343)
T TIGR01305 178 G 178 (343)
T ss_pred c
Confidence 5
No 308
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=27.99 E-value=2e+02 Score=25.77 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=29.9
Q ss_pred HCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHc-CCCCCceeEEeec
Q 020229 197 AAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNC-GVQDTTQIHTHMC 244 (329)
Q Consensus 197 ~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~lH~C 244 (329)
+.--+++-+|||+-+. +++.+.++.+.+..+.+ +.- +.+++|=-
T Consensus 152 aM~P~vmLFDEPTSAL--DPElv~EVL~vm~~LA~eGmT--MivVTHEM 196 (240)
T COG1126 152 AMDPKVMLFDEPTSAL--DPELVGEVLDVMKDLAEEGMT--MIIVTHEM 196 (240)
T ss_pred cCCCCEEeecCCcccC--CHHHHHHHHHHHHHHHHcCCe--EEEEechh
Confidence 4567899999999774 47777777777666553 442 55556655
No 309
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.94 E-value=5.7e+02 Score=24.88 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCeEEecCCccC-CCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh----HHHHHHHHhCC--
Q 020229 187 IYKEVISELKAAGASWIQFDEPLLV-MDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF----NDIIHSIIDMD-- 259 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiDEP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~----~~i~~~l~~~~-- 259 (329)
.+.++++.|.+.|++.|.+-+..+. +..+......+.+.++.+.+ +++...+.+.. .++ .++++.|.+++
T Consensus 157 ~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~~~~~ir~~~--~~p~~i~~ell~~l~~~~~~ 233 (418)
T PRK14336 157 EIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD-IPGLLRIRFLT--SHPKDISQKLIDAMAHLPKV 233 (418)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-cCCccEEEEec--cChhhcCHHHHHHHHhcCcc
Confidence 3456677788899996665544433 32111111223444444442 33212233321 233 35677776654
Q ss_pred CcEEEEEc
Q 020229 260 ADVITIEN 267 (329)
Q Consensus 260 ~d~~~lE~ 267 (329)
+..+++-.
T Consensus 234 ~~~l~lgl 241 (418)
T PRK14336 234 CRSLSLPV 241 (418)
T ss_pred CCceecCC
Confidence 55555543
No 310
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=27.62 E-value=2.2e+02 Score=21.49 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH---HHHHHHHHHHHHhCCc
Q 020229 18 KFALESFWDGKSSAEDLQKVSA---DLRSSIWKQMSEAGIK 55 (329)
Q Consensus 18 ~~a~~~~~~g~is~~el~~~~~---~~~~~~i~~Q~~~Gld 55 (329)
++|.++..+|.+|.++.++... +.-..+.+.-...|++
T Consensus 31 rQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~~gl~ 71 (88)
T PF05121_consen 31 RQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCERFGLT 71 (88)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4677788999999998876544 3334444444555554
No 311
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=27.46 E-value=4.6e+02 Score=24.22 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEE-eecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHT-HMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-H~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.+++.++|++.|.+.-+ ..+.+++..+.+.+. ...| +.++.+ -..++..+ ++.|.+++++.+++-..
T Consensus 175 a~ay~eAGAD~ifv~~~----~~~~~ei~~~~~~~~---~~~p-~~pl~~~~~~~~~~~--~~eL~~lG~~~v~~~~~ 242 (285)
T TIGR02320 175 AEAYAEAGADGIMIHSR----KKDPDEILEFARRFR---NHYP-RTPLVIVPTSYYTTP--TDEFRDAGISVVIYANH 242 (285)
T ss_pred HHHHHHcCCCEEEecCC----CCCHHHHHHHHHHhh---hhCC-CCCEEEecCCCCCCC--HHHHHHcCCCEEEEhHH
Confidence 67788999999999621 123455544433332 2122 234322 22234443 79999999999998743
No 312
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=27.06 E-value=1.2e+02 Score=25.50 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=31.0
Q ss_pred CCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcC-C-CceEeCCC
Q 020229 285 GAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-T-NILWVNPD 327 (329)
Q Consensus 285 ~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~-~-~~l~ispd 327 (329)
++.+.+||--. .. -...++|++.|+++++... . .+++||.|
T Consensus 99 ~~~a~Vav~~~-~~-~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D 141 (177)
T PF09580_consen 99 DDNAYVAVDLD-FN-RFNTKKIKKKVEKAVKSADPRIYNVYVSTD 141 (177)
T ss_pred CCEEEEEEEec-cc-ccchhHHHHHHHHHHHHhCCCccEEEEEcC
Confidence 56777888554 22 6777899999999998864 4 69999886
No 313
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=26.97 E-value=3.9e+02 Score=22.57 Aligned_cols=74 Identities=4% Similarity=0.012 Sum_probs=52.9
Q ss_pred CCCCCceeEEeecccChH------HHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHH
Q 020229 232 GVQDTTQIHTHMCYSNFN------DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEE 305 (329)
Q Consensus 232 ~~~~~~~i~lH~C~Gn~~------~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~ 305 (329)
.+++.++++-|+. |+.+ ++.+.|.+. +++.++.-..++|++......+---
T Consensus 34 ~l~GKVrviq~iA-Gr~sake~N~~l~~aik~a----------------------~f~~d~yqtttIiN~dDAi~gt~~f 90 (160)
T PF09695_consen 34 QLPGKVRVIQHIA-GRSSAKEMNAPLIEAIKAA----------------------KFPHDKYQTTTIINLDDAIWGTGGF 90 (160)
T ss_pred ccCCCEEEEEEec-cCCchhHhhHHHHHHHHHc----------------------CCCccceeEEEEEecccccccchHH
Confidence 4555578888998 8764 233333222 2345677888999998888888888
Q ss_pred HHHHHHHHHHhcCCCceEeCCCC
Q 020229 306 IADRINKMLAVLETNILWVNPDL 328 (329)
Q Consensus 306 i~~ri~~a~~~v~~~~l~ispdC 328 (329)
|+..++.--+..|..++++..++
T Consensus 91 Vrss~e~~kk~~p~s~~vlD~~G 113 (160)
T PF09695_consen 91 VRSSAEDSKKEFPWSQFVLDSNG 113 (160)
T ss_pred HHHHHHHhhhhCCCcEEEEcCCC
Confidence 88888888888888888877664
No 314
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=26.86 E-value=51 Score=26.98 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.0
Q ss_pred HHHHHCCCCeEEecCCccC
Q 020229 193 SELKAAGASWIQFDEPLLV 211 (329)
Q Consensus 193 ~~l~~aG~~~IQiDEP~l~ 211 (329)
.+.++.||++|++|+|...
T Consensus 112 aDa~ASgCkvl~~e~~~~~ 130 (146)
T PF04763_consen 112 ADAYASGCKVLQFEDEHNP 130 (146)
T ss_pred HHHHhcCceEEEecCcCCH
Confidence 3456789999999998743
No 315
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=26.85 E-value=6.8e+02 Score=25.35 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=70.1
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHc-CCCCCcee-EEeec-ccCh----HHHHHHHHhCCCcE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNC-GVQDTTQI-HTHMC-YSNF----NDIIHSIIDMDADV 262 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-~lH~C-~Gn~----~~i~~~l~~~~~d~ 262 (329)
+.++.|.++|++.|.+==|..+ +.+.+. ++++.+ ++. +.++ .+..| .+++ ...++.+.+++++.
T Consensus 31 ~ia~~L~~~Gvd~IEvG~p~as----~~d~~~----~~~i~~~~l~-~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~ 101 (524)
T PRK12344 31 RIARKLDELGVDYIEGGWPGSN----PKDTEF----FKRAKELKLK-HAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPV 101 (524)
T ss_pred HHHHHHHHcCCCEEEEcCCcCC----hhHHHH----HHHHHHhCCC-CcEEEEEeeccccCCCcccHHHHHHHHhCCCCE
Confidence 3456788999999998655432 333332 233332 222 2232 22333 3333 34577888999999
Q ss_pred EEEEcCCCc-----------hhHHHHhhh----cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 263 ITIENSRSD-----------EKLLSVFRE----GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 263 ~~lE~~~~~-----------~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
+++=...+. .+.++.+.+ -...+..+.++..+.......+++.+.+.++++. ..+++++.+.--
T Consensus 102 i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~-~~Gad~i~l~DT 180 (524)
T PRK12344 102 VTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAA-EAGADWVVLCDT 180 (524)
T ss_pred EEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHH-hCCCCeEEEccC
Confidence 998765322 222222222 1123556666655211112356888888777775 568888887543
No 316
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=26.75 E-value=5.6e+02 Score=24.36 Aligned_cols=119 Identities=12% Similarity=0.184 Sum_probs=65.9
Q ss_pred HHHHCCCCeEEecCCccCCCC---C--hHHHHHHHHHHHHHHcCCCCCceeEEeecccChH----H----HHHHHHhCCC
Q 020229 194 ELKAAGASWIQFDEPLLVMDL---D--SHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN----D----IIHSIIDMDA 260 (329)
Q Consensus 194 ~l~~aG~~~IQiDEP~l~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~----~----i~~~l~~~~~ 260 (329)
.+.++|++.|-+-+-.....+ + +-.++.+....+.+.++.+. .-++.-+-||.|. . ....+.+.++
T Consensus 50 i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~-a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa 128 (332)
T PLN02424 50 HVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANR-PLLVGDLPFGSYESSTDQAVESAVRMLKEGGM 128 (332)
T ss_pred HHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCC-CEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 355789999988876532211 1 22345556666777777762 3333477778663 1 3334467999
Q ss_pred cEEEEEcC-CCchhHHHHhhhcccCCCeee--eeeecCCCCCC-------CCHHHHHHHHHHHHHh
Q 020229 261 DVITIENS-RSDEKLLSVFREGVKYGAGIG--PGVYDIHSPRI-------PSTEEIADRINKMLAV 316 (329)
Q Consensus 261 d~~~lE~~-~~~~~~l~~l~~~~~~~~~i~--~Gvvd~~~~~~-------e~~e~i~~ri~~a~~~ 316 (329)
+++.+|=. ....+..+.+.+ .+-.++ +|+.+.....+ -+.++..+.+++|..+
T Consensus 129 ~aVKlEGg~~~~~~~I~~l~~---~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~al 191 (332)
T PLN02424 129 DAVKLEGGSPSRVTAAKAIVE---AGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALAL 191 (332)
T ss_pred cEEEECCCcHHHHHHHHHHHH---cCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHH
Confidence 99999954 222233444432 233333 56655433322 2556666666665443
No 317
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=26.52 E-value=4.4e+02 Score=24.03 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHH--------------HHHHHHHHHHHcCCCCCceeEEeecccCh------H
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKL--------------HAFIHSFRITNCGVQDTTQIHTHMCYSNF------N 249 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~------~ 249 (329)
+.+++|.+.||++|.|-=|.--.-.+...+ +.+.+.+.++.+..+ +.++++-+|+ |. +
T Consensus 28 ~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~-~~pivlm~Y~-N~i~~~G~e 105 (259)
T PF00290_consen 28 EILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEP-DIPIVLMTYY-NPIFQYGIE 105 (259)
T ss_dssp HHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCT-SSEEEEEE-H-HHHHHH-HH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCC-CCCEEEEeec-cHHhccchH
Confidence 345678899999999986662221222222 222344455552222 4788888884 31 2
Q ss_pred HHHHHHHhCCCcEEEE
Q 020229 250 DIIHSIIDMDADVITI 265 (329)
Q Consensus 250 ~i~~~l~~~~~d~~~l 265 (329)
..+..+.++++|++-+
T Consensus 106 ~F~~~~~~aGvdGlIi 121 (259)
T PF00290_consen 106 RFFKEAKEAGVDGLII 121 (259)
T ss_dssp HHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3344444555555544
No 318
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=26.06 E-value=5.6e+02 Score=24.10 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCCeEEec---CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec-----------ccC-hHHHHH
Q 020229 189 KEVISELKAAGASWIQFD---EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC-----------YSN-FNDIIH 253 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiD---EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C-----------~Gn-~~~i~~ 253 (329)
.++++.+.+.|++-|.|- +|.+ ..+.+.+.++.+.+..+ .+.+|.+ .|. ..+.+.
T Consensus 76 ~e~~~~~~~~G~~~i~l~gG~~p~~-------~~~~~~~i~~~Ik~~~~---~i~~~~~t~~ei~~~~~~~g~~~~e~l~ 145 (343)
T TIGR03551 76 AERAAEAWKAGATEVCIQGGIHPDL-------DGDFYLDILRAVKEEVP---GMHIHAFSPMEVYYGARNSGLSVEEALK 145 (343)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCCC-------CHHHHHHHHHHHHHHCC---CceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence 334556777899966665 2321 23333445555544332 1222221 122 246789
Q ss_pred HHHhCCCcEEE
Q 020229 254 SIIDMDADVIT 264 (329)
Q Consensus 254 ~l~~~~~d~~~ 264 (329)
.|.+++++.+.
T Consensus 146 ~LkeAGl~~i~ 156 (343)
T TIGR03551 146 RLKEAGLDSMP 156 (343)
T ss_pred HHHHhCccccc
Confidence 99999999775
No 319
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=25.74 E-value=5.9e+02 Score=24.29 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=68.8
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCC
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+.++.|.++|++.|.+=-|.. ++.+.+ .++.+.+... ...+..++ +.+..+ ++...+++++.+.+=.+.
T Consensus 26 ~ia~~L~~~Gv~~IEvG~p~~----~~~~~e----~i~~i~~~~~-~~~v~~~~-r~~~~d-i~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 26 EIARKLDELGVDVIEAGFPIA----SEGEFE----AIKKISQEGL-NAEICSLA-RALKKD-IDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred HHHHHHHHcCCCEEEEeCCCC----ChHHHH----HHHHHHhcCC-CcEEEEEc-ccCHHH-HHHHHHcCcCEEEEEEcC
Confidence 345678889999999865543 233332 2333333222 24444443 466554 567778888888886543
Q ss_pred Cc-----------hhHHHHhhh----cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeCC
Q 020229 270 SD-----------EKLLSVFRE----GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNP 326 (329)
Q Consensus 270 ~~-----------~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~isp 326 (329)
++ .+.++.+.+ -...+..+.++..|+. .-+++.+.+.++++. ..|.+++++.-
T Consensus 95 Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~---r~~~~~l~~~~~~~~-~~g~~~i~l~D 162 (363)
T TIGR02090 95 SPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT---RTDIDFLIKVFKRAE-EAGADRINIAD 162 (363)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecC---CCCHHHHHHHHHHHH-hCCCCEEEEeC
Confidence 21 122222211 1123566777776653 246788887777765 45777777654
No 320
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=25.73 E-value=2.4e+02 Score=20.19 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 020229 15 RELKFALESFWDGKSSAEDLQKVSADLRSSIW 46 (329)
Q Consensus 15 ~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i 46 (329)
..|..-.+.|.+++||+++|-+..+..+.+-+
T Consensus 28 ~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~l 59 (70)
T PF12174_consen 28 DLLQKHYEEFKKKKISREEFVRKLRQIVGDQL 59 (70)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 34566667889999999999988877766544
No 321
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=25.58 E-value=92 Score=17.85 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=18.1
Q ss_pred HHHHHHHHHh---CCCCCHHHHHHHHHH
Q 020229 16 ELKFALESFW---DGKSSAEDLQKVSAD 40 (329)
Q Consensus 16 eL~~a~~~~~---~g~is~~el~~~~~~ 40 (329)
+|+++.+.|. .|.||.+||..++..
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4666777775 466999999998763
No 322
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=25.50 E-value=3.1e+02 Score=26.28 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCC-eEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH
Q 020229 175 FSLLSLLPKILPIYKEVISELKAAGAS-WIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN 249 (329)
Q Consensus 175 ~~~~~l~~~la~~~~~~i~~l~~aG~~-~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~ 249 (329)
.+.++|-+.|.-.+.+.+=...++|++ .|.=|||-+...--+..+.. .+.++++++-++ ...-++-.|.|++.
T Consensus 175 i~~e~lw~nl~yFL~~v~PvAEe~gV~laiHPDDPP~~~~GlpRi~~~-~e~~~~~~~~~~-Sp~nGltfC~Gs~g 248 (351)
T PF03786_consen 175 IDEEQLWENLKYFLEAVIPVAEEAGVKLAIHPDDPPWPLFGLPRIVST-AEDLKRILDLVD-SPANGLTFCTGSLG 248 (351)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHCT-EEEEE--SSSS-BTTB---TTS-HHHHHHHHHCT--STTEEEEEECCHHH
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHhCCEEEeCCCCCCCccCCCCcccCC-HHHHHHHHHhCC-CccccEEeecCccc
Confidence 467888888888888888888899999 79999987663111111100 122244444343 23458889989774
No 323
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.50 E-value=1e+02 Score=28.50 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCC-------CCCHHHHHHHHHH--------------HHHHHHHHHHHhCCccccCCCcccchhHHhhh
Q 020229 16 ELKFALESFWDG-------KSSAEDLQKVSAD--------------LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTT 72 (329)
Q Consensus 16 eL~~a~~~~~~g-------~is~~el~~~~~~--------------~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~ 72 (329)
-|.++.++...| +.+.++++++.+. ...+.+....+.|+|+|+.|-....-..+|+.
T Consensus 197 sle~~~eAl~agaDiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~~lDis 274 (280)
T COG0157 197 SLEEAEEALEAGADIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAPALDIS 274 (280)
T ss_pred CHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCccccCCcccceE
Confidence 455666666666 6889999988887 34577888899999999999887554444444
No 324
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=24.88 E-value=4.6e+02 Score=22.76 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred HHHHHCCCCeEEec-CCccCCCCChHHHHHHHHHHHHHHc--CCCCCceeEEeecccChHHHHHH---HHhCCCcEEEEE
Q 020229 193 SELKAAGASWIQFD-EPLLVMDLDSHKLHAFIHSFRITNC--GVQDTTQIHTHMCYSNFNDIIHS---IIDMDADVITIE 266 (329)
Q Consensus 193 ~~l~~aG~~~IQiD-EP~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~lH~C~Gn~~~i~~~---l~~~~~d~~~lE 266 (329)
+.....|+++|-|| |-+....-.......+..+++.+.. ... ..+.+=+-.-+.. .+.. +++.+++++-+.
T Consensus 15 ~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~--~~~~VRvn~~~~~-~~~~Dl~~l~~g~~gI~lP 91 (221)
T PF03328_consen 15 EKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAG--SEIIVRVNSLDSP-HIERDLEALDAGADGIVLP 91 (221)
T ss_dssp HHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSS--SEEEEE-SSTTCH-HHHHHHHHHHTTSSEEEET
T ss_pred HHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccccc--ccceecCCCCCcc-hhhhhhhhcccCCCeeecc
Confidence 34567899999999 4433211111111223344444332 222 3444444422222 2333 788999999999
Q ss_pred cCCCchhHHHH
Q 020229 267 NSRSDEKLLSV 277 (329)
Q Consensus 267 ~~~~~~~~l~~ 277 (329)
...+..+..+.
T Consensus 92 ~ves~~~~~~~ 102 (221)
T PF03328_consen 92 KVESAEDARQA 102 (221)
T ss_dssp T--SHHHHHHH
T ss_pred ccCcHHHHHHH
Confidence 88765544433
No 325
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.75 E-value=6e+02 Score=25.02 Aligned_cols=124 Identities=9% Similarity=0.147 Sum_probs=58.6
Q ss_pred hhcHHHHHHHHhcCCCCCcEeecHHHHHhhcCCCCCccCCCCHHHHHHHHHHH----------------HHHHHHHHHHC
Q 020229 135 HKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFSLLSLLPKILPI----------------YKEVISELKAA 198 (329)
Q Consensus 135 ~~~~~~~~~~~~~~~~~k~~i~GP~tl~~~~~~~~~y~~~~~~~~l~~~la~~----------------~~~~i~~l~~a 198 (329)
...+++++.+.+.|++ ..+++|.-+..|.. +... .+..+++..+.+. -.+.++.+.++
T Consensus 181 e~Vv~Ei~~l~~~G~~-ei~l~~~~~~~y~d---~~~~--~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~~ 254 (445)
T PRK14340 181 ASVLDEVRALAEAGYR-EITLLGQNVNSYSD---PEAG--ADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAAR 254 (445)
T ss_pred HHHHHHHHHHHHCCCe-EEEEeecccchhhc---cCCC--chHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHhC
Confidence 4567777777765532 33466665443311 1000 1233444443221 13445555554
Q ss_pred --CCCeEEecCCccCC----CCC-hHHHHHHHHHHHHHHcCCCCCceeEEeeccc-------ChHHHHHHHHhCCCcEEE
Q 020229 199 --GASWIQFDEPLLVM----DLD-SHKLHAFIHSFRITNCGVQDTTQIHTHMCYS-------NFNDIIHSIIDMDADVIT 264 (329)
Q Consensus 199 --G~~~IQiDEP~l~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G-------n~~~i~~~l~~~~~d~~~ 264 (329)
||.++.|===+.+. .+. ....+.+.++++.+.+.+| +..+...+=.| ++...++.+.++++|.++
T Consensus 255 ~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~p-gi~i~td~IvGfPgET~edf~~tl~~~~~~~~~~~~ 333 (445)
T PRK14340 255 PNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIP-GVTLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAF 333 (445)
T ss_pred CCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCEEeccEEEECCCCCHHHHHHHHHHHHhcCCCEEe
Confidence 78777663111110 010 1122345666666665554 23332222224 234677888888888766
Q ss_pred E
Q 020229 265 I 265 (329)
Q Consensus 265 l 265 (329)
+
T Consensus 334 ~ 334 (445)
T PRK14340 334 M 334 (445)
T ss_pred e
Confidence 4
No 326
>PRK08444 hypothetical protein; Provisional
Probab=24.72 E-value=6.2e+02 Score=24.15 Aligned_cols=108 Identities=12% Similarity=0.195 Sum_probs=57.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec-------------ccCh-HHHHHHHHh
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC-------------YSNF-NDIIHSIID 257 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C-------------~Gn~-~~i~~~l~~ 257 (329)
++...+.|++-+.|=- ... ....++.+.+++..+.+..| .+|+| .|-. .+.+..|.+
T Consensus 89 a~~a~~~G~~ei~iv~-G~~---p~~~~e~y~e~ir~Ik~~~p-----~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lke 159 (353)
T PRK08444 89 VKNSVKRGIKEVHIVS-AHN---PNYGYEWYLEIFKKIKEAYP-----NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLE 159 (353)
T ss_pred HHHHHHCCCCEEEEec-cCC---CCCCHHHHHHHHHHHHHHCC-----CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4556789999555541 111 11235556667777765554 34555 2322 367899999
Q ss_pred CCCcEEE---EEcC--------CC---c-hhHHHHhh---h-cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHH
Q 020229 258 MDADVIT---IENS--------RS---D-EKLLSVFR---E-GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 315 (329)
Q Consensus 258 ~~~d~~~---lE~~--------~~---~-~~~l~~l~---~-~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~ 315 (329)
+++|.+. .|.. .+ . .+.++.+. + .++......+|. .||+|+.++.+.+.-+
T Consensus 160 AGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~-------gEt~edrv~hl~~Lr~ 229 (353)
T PRK08444 160 YGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGH-------IENREHRIDHMLRLRD 229 (353)
T ss_pred hCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEec-------CCCHHHHHHHHHHHHH
Confidence 9988763 3331 01 1 22222222 1 123334445554 4888888887776543
No 327
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=24.60 E-value=4.7e+02 Score=25.00 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=20.2
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHH
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHS 225 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~ 225 (329)
++.+.++|++.|.|-|..-. +.+..+..++..
T Consensus 147 ~~~~~~~g~~~i~l~DT~G~--~~P~~v~~li~~ 178 (363)
T TIGR02090 147 FKRAEEAGADRINIADTVGV--LTPQKMEELIKK 178 (363)
T ss_pred HHHHHhCCCCEEEEeCCCCc--cCHHHHHHHHHH
Confidence 44566789999999887733 345555433333
No 328
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=24.55 E-value=75 Score=26.99 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCCceEeCCCCC
Q 020229 306 IADRINKMLAVLETNILWVNPDLH 329 (329)
Q Consensus 306 i~~ri~~a~~~v~~~~l~ispdCG 329 (329)
=.++.+.+++.+...++|+.|-||
T Consensus 118 H~~~~~~~Le~~~~~~~~vC~vCG 141 (166)
T COG1592 118 HAEMFRGLLERLEEGKVWVCPVCG 141 (166)
T ss_pred HHHHHHHHHHhhhcCCEEEcCCCC
Confidence 346777788888777899999998
No 329
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=24.37 E-value=62 Score=29.88 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhCCccccCCCccc
Q 020229 39 ADLRSSIWKQMSEAGIKYIPSNTFSY 64 (329)
Q Consensus 39 ~~~~~~~i~~Q~~~Gld~itdGe~~~ 64 (329)
++++.++.+..+++|+|++|-|++-+
T Consensus 227 ~~Ev~e~m~DLr~~gvdilTiGQYlq 252 (306)
T COG0320 227 DEEVIEVMDDLRSAGVDILTIGQYLQ 252 (306)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccC
Confidence 44566677888999999999999643
No 330
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.29 E-value=6.9e+02 Score=24.58 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCeEEecCC-ccCC--CCChHHHHHHHHHHHHHHcCCCCCceeEEeeccc-C-hHHHHHHHHhC--CC
Q 020229 188 YKEVISELKAAGASWIQFDEP-LLVM--DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYS-N-FNDIIHSIIDM--DA 260 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G-n-~~~i~~~l~~~--~~ 260 (329)
+.++++.|.+.|++.|.|-.. ...+ +..... +.+.++.+.+ +.....+.++...- + ..++++.|.+. .+
T Consensus 183 Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~---l~~Ll~~l~~-~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~ 258 (445)
T PRK14340 183 VLDEVRALAEAGYREITLLGQNVNSYSDPEAGAD---FAGLLDAVSR-AAPEMRIRFTTSHPKDISESLVRTIAARPNIC 258 (445)
T ss_pred HHHHHHHHHHCCCeEEEEeecccchhhccCCCch---HHHHHHHHhh-cCCCcEEEEccCChhhcCHHHHHHHHhCCCCC
Confidence 445567788899997666332 2222 111122 3344444433 22234444444311 1 14677777776 36
Q ss_pred cEEEEEcC
Q 020229 261 DVITIENS 268 (329)
Q Consensus 261 d~~~lE~~ 268 (329)
..+++-.-
T Consensus 259 ~~l~iglQ 266 (445)
T PRK14340 259 NHIHLPVQ 266 (445)
T ss_pred CeEEECCC
Confidence 66766543
No 331
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.24 E-value=2.3e+02 Score=25.43 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=24.1
Q ss_pred HHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHc
Q 020229 194 ELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNC 231 (329)
Q Consensus 194 ~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~ 231 (329)
...+.+.+++-+|||+...| +...+.+.+.+.++.+
T Consensus 151 ~vLa~~P~iliLDEPta~LD--~~~~~~l~~~l~~L~~ 186 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLD--PKGRRELLELLKKLKE 186 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCC--HHHHHHHHHHHHHHHh
Confidence 34457899999999997754 4444455566665554
No 332
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.21 E-value=2e+02 Score=27.48 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHh--CCCcEEEEEcCCCc-h---hHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 250 DIIHSIID--MDADVITIENSRSD-E---KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 250 ~i~~~l~~--~~~d~~~lE~~~~~-~---~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
+.+..|.+ .++|.+.+|.++.+ . +..+.+++.+| +..|+.|+| -|+|-.++.+..-++.+
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P-~~~vIaGNV-------~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP-DKTICAGNV-------VTGEMVEELILSGADIV 176 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCC-CCcEEEecc-------cCHHHHHHHHHcCCCEE
Confidence 46677776 48899999988753 2 33444444333 577889986 66777766666544443
No 333
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=24.19 E-value=3.6e+02 Score=25.09 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEcC
Q 020229 199 GASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENS 268 (329)
Q Consensus 199 G~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~~ 268 (329)
|++.||+|-+.=....+++.++.+.++++.+ +.+ ++.+=.. |+.+ +.+..+.++++|.|++=..
T Consensus 211 ~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~--g~~---~~~ieaS-GgI~~~~i~~~a~~gvD~isvGs~ 275 (302)
T cd01571 211 KLDGVRLDTPSSRRGVFRYLIREVRWALDIR--GYK---HVKIFVS-GGLDEEDIKELEDVGVDAFGVGTA 275 (302)
T ss_pred CCcEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCC---CeEEEEe-CCCCHHHHHHHHHcCCCEEECCcc
Confidence 5899999954311112344455556665432 222 2233444 6664 5677788899999977643
No 334
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.19 E-value=5.4e+02 Score=23.33 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=42.1
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHH--------------HHHHHHHHHHcCCCCCceeEEeeccc-----ChHHH
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLH--------------AFIHSFRITNCGVQDTTQIHTHMCYS-----NFNDI 251 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~lH~C~G-----n~~~i 251 (329)
.+++|.+.|+++|.|-=|.--.-.+...++ .+.+.+.++.+.-. +.++++-+|+- ..++.
T Consensus 31 ~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~-~~p~vlm~Y~N~i~~~G~e~f 109 (258)
T PRK13111 31 IIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDP-TIPIVLMTYYNPIFQYGVERF 109 (258)
T ss_pred HHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCEEEEecccHHhhcCHHHH
Confidence 356688899999999877622212222221 12223333332222 36777878742 13456
Q ss_pred HHHHHhCCCcEEEE
Q 020229 252 IHSIIDMDADVITI 265 (329)
Q Consensus 252 ~~~l~~~~~d~~~l 265 (329)
++.+.++++|++-+
T Consensus 110 ~~~~~~aGvdGvii 123 (258)
T PRK13111 110 AADAAEAGVDGLII 123 (258)
T ss_pred HHHHHHcCCcEEEE
Confidence 77777888877776
No 335
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=24.14 E-value=77 Score=29.61 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEeCCC
Q 020229 298 PRIPSTEEIADRINKMLAVLETNILWVNPD 327 (329)
Q Consensus 298 ~~~e~~e~i~~ri~~a~~~v~~~~l~ispd 327 (329)
..++|||+|+++|++..+..|.+++++.++
T Consensus 277 ~iiGspe~v~~~l~~~~~~~G~d~~~~~~~ 306 (323)
T TIGR03558 277 SIVGSPETVREQLEALAERTGADELMVTTP 306 (323)
T ss_pred eEEcCHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 357999999999999888889999998775
No 336
>PF14178 YppF: YppF-like protein
Probab=24.03 E-value=1.4e+02 Score=20.80 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 020229 15 RELKFALESFWDGKSSAEDLQKVSADL 41 (329)
Q Consensus 15 ~eL~~a~~~~~~g~is~~el~~~~~~~ 41 (329)
+=|-+|+..|-+|+|+-.+++...++.
T Consensus 23 eLLDFar~~Yi~gei~i~eYR~lvreL 49 (60)
T PF14178_consen 23 ELLDFARKLYIQGEISINEYRNLVREL 49 (60)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 346678888999999999998876553
No 337
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=23.78 E-value=5.8e+02 Score=23.55 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCCeEEecCCcc-------CCC-----CChHHHHHHHHHHHHHHcC-CCCCceeEEeec-----ccChH
Q 020229 188 YKEVISELKAAGASWIQFDEPLL-------VMD-----LDSHKLHAFIHSFRITNCG-VQDTTQIHTHMC-----YSNFN 249 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l-------~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~i~lH~C-----~Gn~~ 249 (329)
+.+.++.+.++|+.-|+|.|=.. ... ++.+ ++.+-++.+.+. ...+..|.-.+. .| ++
T Consensus 94 v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~e---e~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~-~~ 169 (285)
T TIGR02320 94 FRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVE---EFCGKIRAGKDAQTTEDFMIIARVESLILGKG-ME 169 (285)
T ss_pred HHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHH---HHHHHHHHHHHhccCCCeEEEEecccccccCC-HH
Confidence 34456778889999999977431 111 1222 223333333322 122355544522 22 44
Q ss_pred ---HHHHHHHhCCCcEEEEEcC-CCchhHHHHhh
Q 020229 250 ---DIIHSIIDMDADVITIENS-RSDEKLLSVFR 279 (329)
Q Consensus 250 ---~i~~~l~~~~~d~~~lE~~-~~~~~~l~~l~ 279 (329)
.......++++|++++++. .+..+..++.+
T Consensus 170 eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~ 203 (285)
T TIGR02320 170 DALKRAEAYAEAGADGIMIHSRKKDPDEILEFAR 203 (285)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHH
Confidence 3455557899999999963 44555555554
No 338
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.73 E-value=6.5e+02 Score=24.06 Aligned_cols=71 Identities=10% Similarity=0.089 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHCCCCeEEec--CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEE
Q 020229 187 IYKEVISELKAAGASWIQFD--EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 264 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD--EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~ 264 (329)
.+.++++.+.+.|++-|.|= ++. ....++.+.++++.+.+..+ .+.+|+. .-..+-+..|.+++++.++
T Consensus 108 EI~~~a~~~~~~Gv~~i~lvgGe~p-----~~~~~e~l~~~i~~Ik~~~p---~i~i~~g-~lt~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 108 EIEREMAAIKKLGFEHILLLTGEHE-----AKVGVDYIRRALPIAREYFS---SVSIEVQ-PLSEEEYAELVELGLDGVT 178 (371)
T ss_pred HHHHHHHHHHhCCCCEEEEeeCCCC-----CCCCHHHHHHHHHHHHHhCC---CceeccC-CCCHHHHHHHHHcCCCEEE
Confidence 34444566778899976663 221 11234444555555554443 2233432 2224567899999999998
Q ss_pred EE
Q 020229 265 IE 266 (329)
Q Consensus 265 lE 266 (329)
+-
T Consensus 179 i~ 180 (371)
T PRK09240 179 VY 180 (371)
T ss_pred EE
Confidence 44
No 339
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=23.73 E-value=5.5e+02 Score=23.26 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=70.2
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcC
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~ 268 (329)
.+.++.|.++|++.|++=-|... +++.+.. +.+.+ ......+..| |+.|..+ ++...+++++.+.+-++
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~----~~~~~~~----~~l~~-~~~~~~v~~~-~r~~~~d-i~~a~~~g~~~i~i~~~ 93 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAAS----PQSRADC----EAIAK-LGLKAKILTH-IRCHMDD-ARIAVETGVDGVDLVFG 93 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCC----HHHHHHH----HHHHh-CCCCCcEEEE-ecCCHHH-HHHHHHcCcCEEEEEEe
Confidence 34567788999999999867533 3333222 22221 1112344334 4567764 56667789999888764
Q ss_pred CC-----------chhHHHHhhh----cccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 269 RS-----------DEKLLSVFRE----GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 269 ~~-----------~~~~l~~l~~----~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
.+ ..+.++.+.+ -...|..+.+++.|+... +++.+.+-++++.+ .+.+++++.
T Consensus 94 ~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~---~~~~l~~~~~~~~~-~g~~~i~l~ 161 (262)
T cd07948 94 TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRS---DLVDLLRVYRAVDK-LGVNRVGIA 161 (262)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCC---CHHHHHHHHHHHHH-cCCCEEEEC
Confidence 22 1233333321 112366788888876432 26777766666644 477777764
No 340
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.64 E-value=5.8e+02 Score=23.48 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=62.6
Q ss_pred HHHHHHCCCC-eEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccC-hHHHHHHHHhCCCcEEEEEcCC
Q 020229 192 ISELKAAGAS-WIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSN-FNDIIHSIIDMDADVITIENSR 269 (329)
Q Consensus 192 i~~l~~aG~~-~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn-~~~i~~~l~~~~~d~~~lE~~~ 269 (329)
+++..+.++. +||+.+..+.+ .. ++.+......+.+..+ +++.||+=-|. ++.+. .-.+++++.+-+|-+.
T Consensus 30 i~AAe~~~sPvIi~~~~~~~~~-~~---~~~~~~~~~~~a~~~~--VPV~lHLDH~~~~~~i~-~ai~~GftSVMiD~S~ 102 (276)
T cd00947 30 LEAAEETRSPVILQISEGAIKY-AG---LELLVAMVKAAAERAS--VPVALHLDHGSSFELIK-RAIRAGFSSVMIDGSH 102 (276)
T ss_pred HHHHHHhCCCEEEEcCcchhhh-CC---HHHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHH-HHHHhCCCEEEeCCCC
Confidence 4455566777 89998776543 22 2223444444444443 68889987664 55444 4457899999999776
Q ss_pred Cch-hHHHHhhh----cccCC--CeeeeeeecCCC-------CCCCCHHHHHHHHHH
Q 020229 270 SDE-KLLSVFRE----GVKYG--AGIGPGVYDIHS-------PRIPSTEEIADRINK 312 (329)
Q Consensus 270 ~~~-~~l~~l~~----~~~~~--~~i~~Gvvd~~~-------~~~e~~e~i~~ri~~ 312 (329)
.++ +.++.-++ -...| -..=+|-|.... ...-+||++++-+++
T Consensus 103 l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~ 159 (276)
T cd00947 103 LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE 159 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH
Confidence 432 22222111 01112 234566664322 124568877766665
No 341
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=23.61 E-value=3e+02 Score=20.47 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHHHHHh-C---C-CCCHHHHHHHHHHHH----------HHHHHHHHHhCCccccCCCcccchhH
Q 020229 15 RELKFALESFW-D---G-KSSAEDLQKVSADLR----------SSIWKQMSEAGIKYIPSNTFSYYDQV 68 (329)
Q Consensus 15 ~eL~~a~~~~~-~---g-~is~~el~~~~~~~~----------~~~i~~Q~~~Gld~itdGe~~~~d~~ 68 (329)
..++++...|. + | .||.+||++...... .++-+...+ +|.=.||.+.+.+|+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~e--lD~n~dG~Idf~EF~ 76 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMND--LDSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHH--hCCCCCCCCCHHHHH
Confidence 35667777777 2 3 499999999986631 122222333 455567887766654
No 342
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.57 E-value=5.7e+02 Score=23.31 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCeEEecC--CccCC---CCChHHHHHHHHHHHHHHcCCCCCceeEEeecccC---hHHHHHHHHhCCCc
Q 020229 190 EVISELKAAGASWIQFDE--PLLVM---DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSN---FNDIIHSIIDMDAD 261 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDE--P~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn---~~~i~~~l~~~~~d 261 (329)
+.++.+.++|++.|.|.= |.... .+. ...+.+.+.++.+.+.. +.++.+-+= .+ ...++..+.+.++|
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~--~~Pv~vKl~-~~~~~~~~~a~~~~~~G~d 181 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKAT--DVPVIVKLT-PNVTDIVEIARAAEEAGAD 181 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhcc--CCCEEEEeC-CCchhHHHHHHHHHHcCCC
Confidence 334556778999999972 32110 010 11122334444444433 256666543 33 33567778889999
Q ss_pred EEEE
Q 020229 262 VITI 265 (329)
Q Consensus 262 ~~~l 265 (329)
++.+
T Consensus 182 ~i~~ 185 (296)
T cd04740 182 GLTL 185 (296)
T ss_pred EEEE
Confidence 8876
No 343
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=23.45 E-value=4.4e+02 Score=25.25 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=38.3
Q ss_pred hHHHHHHHHhCCCcEEEEEcCCCc-h---hHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHH
Q 020229 248 FNDIIHSIIDMDADVITIENSRSD-E---KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 315 (329)
Q Consensus 248 ~~~i~~~l~~~~~d~~~lE~~~~~-~---~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~ 315 (329)
....++.|.+.++|.|.+|.++.. . +.++.+++.++ +..|+.|+| -|.|..++.++.-++
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~-~~~viaGNV-------~T~e~a~~L~~aGad 172 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP-DVPVIAGNV-------VTYEGAKDLIDAGAD 172 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST-TSEEEEEEE--------SHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC-CceEEeccc-------CCHHHHHHHHHcCCC
Confidence 446899999999999999988643 2 34445554444 578999997 556666665554333
No 344
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=23.12 E-value=2.8e+02 Score=26.11 Aligned_cols=68 Identities=6% Similarity=0.083 Sum_probs=41.4
Q ss_pred HCCCCeEEecCCccCCCC---ChHHHHHHHHHHHHHHcCCCCCceeEEee-cccChHHHHHHHHhCCCcEEEEE
Q 020229 197 AAGASWIQFDEPLLVMDL---DSHKLHAFIHSFRITNCGVQDTTQIHTHM-CYSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 197 ~aG~~~IQiDEP~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~lH~-C~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
.++++.++|.=....... ....++.+.+.++.+.+.++ .++++.. ++|.....+..+.+.++|++.+-
T Consensus 138 ~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~--vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 138 MIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALS--VPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred hcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 346777777622111111 11234334456666666554 6778875 45666678888999999999974
No 345
>PLN02321 2-isopropylmalate synthase
Probab=23.02 E-value=8.7e+02 Score=25.31 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=63.8
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCc--eeEEeecccChHH---HHHHHHhCCCcEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTT--QIHTHMCYSNFND---IIHSIIDMDADVIT 264 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~lH~C~Gn~~~---i~~~l~~~~~d~~~ 264 (329)
+.++.|.++|++.|.+==|+.+ +.+.+.+....+.+..+++.+. ..++-.|+.|..+ .++.+...+...++
T Consensus 112 ~Ia~~L~~lGVd~IEvGfP~~S----p~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I~ 187 (632)
T PLN02321 112 DIARQLAKLGVDIIEAGFPIAS----PDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIH 187 (632)
T ss_pred HHHHHHHHcCCCEEEEeCcCCC----ccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCCEEE
Confidence 4456788999999998655533 3444443333222222332222 2222223334433 34443344444677
Q ss_pred EEcCCCc-----------hhHHHHhhhcc----cCCC-eeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEeC
Q 020229 265 IENSRSD-----------EKLLSVFREGV----KYGA-GIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 325 (329)
Q Consensus 265 lE~~~~~-----------~~~l~~l~~~~----~~~~-~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~is 325 (329)
+-.+.++ .+.++.+.+-+ ..+. .+.+|.-|.. .-+++.+.+-++++.+ .|.+.+.+.
T Consensus 188 i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~---rtd~d~l~~~~~~a~~-aGa~~I~L~ 260 (632)
T PLN02321 188 TFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG---RSDPEFLYRILGEVIK-AGATTLNIP 260 (632)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC---CCCHHHHHHHHHHHHH-cCCCEEEec
Confidence 7655332 23333222200 1122 4666655443 2457888777777755 477777764
No 346
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=22.98 E-value=5.7e+02 Score=23.13 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=47.1
Q ss_pred HHHCCCCeEEec-CCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEEcCCCchh
Q 020229 195 LKAAGASWIQFD-EPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEK 273 (329)
Q Consensus 195 l~~aG~~~IQiD-EP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~ 273 (329)
+..+|.|+|-|| |.. . ++.+.+..+..+. +... ....+=+...+. ..+...++.+++++-+.+.++.++
T Consensus 36 ~a~~G~D~v~iD~EHg-~--~~~~~~~~~i~a~----~~~g--~~~lVRvp~~~~-~~i~r~LD~Ga~giivP~v~tae~ 105 (256)
T PRK10558 36 LGLAGFDWLVLDGEHA-P--NDVSTFIPQLMAL----KGSA--SAPVVRVPTNEP-VIIKRLLDIGFYNFLIPFVETAEE 105 (256)
T ss_pred HHhcCCCEEEEccccC-C--CCHHHHHHHHHHH----hhcC--CCcEEECCCCCH-HHHHHHhCCCCCeeeecCcCCHHH
Confidence 456899999999 443 1 2333443333332 2221 333556664444 456778899999999999988777
Q ss_pred HHHHhh
Q 020229 274 LLSVFR 279 (329)
Q Consensus 274 ~l~~l~ 279 (329)
..+.+.
T Consensus 106 a~~~v~ 111 (256)
T PRK10558 106 ARRAVA 111 (256)
T ss_pred HHHHHH
Confidence 666655
No 347
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=22.97 E-value=1.9e+02 Score=29.09 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=21.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHH
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRIT 229 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~ 229 (329)
++++. .++++|-+|||+.+. +..+.+.+.+.++++
T Consensus 157 ArAl~-~~arllIlDEPTaaL--t~~E~~~Lf~~ir~L 191 (500)
T COG1129 157 ARALS-FDARVLILDEPTAAL--TVKETERLFDLIRRL 191 (500)
T ss_pred HHHHh-cCCCEEEEcCCcccC--CHHHHHHHHHHHHHH
Confidence 34444 389999999999774 444444444444443
No 348
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=22.90 E-value=1.5e+02 Score=21.69 Aligned_cols=35 Identities=11% Similarity=0.320 Sum_probs=22.3
Q ss_pred hCCCCCHHHHHHHHH------HHHHHHHHHHHHhCCccccC
Q 020229 25 WDGKSSAEDLQKVSA------DLRSSIWKQMSEAGIKYIPS 59 (329)
Q Consensus 25 ~~g~is~~el~~~~~------~~~~~~i~~Q~~~Gld~itd 59 (329)
.+|-+|.+++.+++. +.+..++....+.||+++.+
T Consensus 18 ~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~gI~Vvd~ 58 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDDLDPEQIDEIYDTLEDEGIEVVDE 58 (82)
T ss_dssp HHSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT----B--
T ss_pred hcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHCCCEEecC
Confidence 468899999886654 56888999999999999974
No 349
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=22.88 E-value=3e+02 Score=25.41 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=46.1
Q ss_pred ceeEEeecccChHHHHHHHHhCCCcEEEEEcCC--C-chhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHH
Q 020229 237 TQIHTHMCYSNFNDIIHSIIDMDADVITIENSR--S-DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKM 313 (329)
Q Consensus 237 ~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE~~~--~-~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a 313 (329)
.++.+|-+-|-..+-+..+.+++++.+.+...- . .....+.+.+ +. +..|.........+.+++.+++.
T Consensus 201 iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~v~~~ 272 (282)
T TIGR01859 201 IPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTE----KK----DEYDPRKILGPAREAIKETVKEK 272 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHHh----CC----CcCCHHHHHHHHHHHHHHHHHHH
Confidence 678999998877777888899999999998652 1 2233333432 11 01222222234446677777777
Q ss_pred HHhcCC
Q 020229 314 LAVLET 319 (329)
Q Consensus 314 ~~~v~~ 319 (329)
++.++.
T Consensus 273 ~~~~gs 278 (282)
T TIGR01859 273 MRLFGS 278 (282)
T ss_pred HHHhCC
Confidence 776653
No 350
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism]
Probab=22.87 E-value=90 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=25.9
Q ss_pred cccccccCCceeeeceecCCCceeecchhcHHHHHHH
Q 020229 108 EMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEA 144 (329)
Q Consensus 108 ~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~ 144 (329)
.+++|.+.|+.|-||++.+- +......+++++.+..
T Consensus 109 ~Lt~fV~~nHpYeVpEVial-pi~~gs~~YLeW~~q~ 144 (153)
T KOG3338|consen 109 PLTKFVRGNHPYEVPEVIAL-PIHLGSRPYLEWMNQC 144 (153)
T ss_pred hHHHHHhcCCCccchhheee-ccccCCcHHHHHHHHh
Confidence 67888889999999999863 3443456677775543
No 351
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.75 E-value=5.5e+02 Score=22.85 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHhcCCCc
Q 020229 302 STEEIADRINKMLAVLETNI 321 (329)
Q Consensus 302 ~~e~i~~ri~~a~~~v~~~~ 321 (329)
+++.+.+-++++.+.++.++
T Consensus 186 ~~~~~~~~i~~~~~~~g~~~ 205 (273)
T smart00518 186 TVEGFEKVLEEFENVLGLEY 205 (273)
T ss_pred CHHHHHHHHHHHHHHhCHHh
Confidence 46777777777766666433
No 352
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=22.53 E-value=2.4e+02 Score=22.01 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh
Q 020229 194 ELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF 248 (329)
Q Consensus 194 ~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~ 248 (329)
+..++|..|+-| |.-...++.+.++.|.+++ +..+ .+|.+|+--|+-
T Consensus 52 ~a~~~Gl~y~~i--Pv~~~~~~~~~v~~f~~~l----~~~~--~Pvl~hC~sG~R 98 (110)
T PF04273_consen 52 AAEALGLQYVHI--PVDGGAITEEDVEAFADAL----ESLP--KPVLAHCRSGTR 98 (110)
T ss_dssp HHHHCT-EEEE------TTT--HHHHHHHHHHH----HTTT--TSEEEE-SCSHH
T ss_pred HHHHcCCeEEEe--ecCCCCCCHHHHHHHHHHH----HhCC--CCEEEECCCChh
Confidence 456789887655 4544456666666666555 4454 478888876653
No 353
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.52 E-value=7.6e+02 Score=24.44 Aligned_cols=131 Identities=10% Similarity=0.126 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHCCCCeEEec-CCccCCCCChH-----HHHHHHHHHHHHHcCCCCCceeEEeecccC--hHHHHHHHHhC
Q 020229 187 IYKEVISELKAAGASWIQFD-EPLLVMDLDSH-----KLHAFIHSFRITNCGVQDTTQIHTHMCYSN--FNDIIHSIIDM 258 (329)
Q Consensus 187 ~~~~~i~~l~~aG~~~IQiD-EP~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn--~~~i~~~l~~~ 258 (329)
.+.++++.|.+.|++.|.|- .-..++..... ....+.+.++.+.+..+ ...+.+.+...+ ..++++.|.+.
T Consensus 201 ~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~-~~~ir~~~~~p~~l~~ell~~m~~~ 279 (467)
T PRK14329 201 SILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVP-DMRIRFSTSHPKDMTDDVLEVMAKY 279 (467)
T ss_pred HHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCC-CcEEEEecCCcccCCHHHHHHHHhC
Confidence 44566778888999966554 33322222110 01233444554443322 234444432111 23678888776
Q ss_pred --CCcEEEEEcCCCchhHHHHhhhc---------------ccCCC----eeeeeeecCCCCCCCCHHHHHHHHHHHHHhc
Q 020229 259 --DADVITIENSRSDEKLLSVFREG---------------VKYGA----GIGPGVYDIHSPRIPSTEEIADRINKMLAVL 317 (329)
Q Consensus 259 --~~d~~~lE~~~~~~~~l~~l~~~---------------~~~~~----~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v 317 (329)
.+..+++-.-+...+.|+.+++. ...+- .+++|. --||.|++.+.++-+ +.+
T Consensus 280 ~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvGf------PgET~edf~~tl~~i-~~l 352 (467)
T PRK14329 280 DNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAGF------PTETEEDHQDTLSLM-EEV 352 (467)
T ss_pred CCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEeC------CCCCHHHHHHHHHHH-Hhh
Confidence 46777765433323333332210 00011 223333 248888887766555 556
Q ss_pred CCCceEeC
Q 020229 318 ETNILWVN 325 (329)
Q Consensus 318 ~~~~l~is 325 (329)
+.+.+.+.
T Consensus 353 ~~~~~~v~ 360 (467)
T PRK14329 353 GYDFAFMF 360 (467)
T ss_pred CCCeEeee
Confidence 66666543
No 354
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=22.36 E-value=4e+02 Score=26.87 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~l 265 (329)
.+-+++|.++|+++|.+|-+- .-+... .+.+.++.+..| +..++.-.| .+. .-...+.++++|++-+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~---g~~~~~----~~~i~~ik~~~p-~~~vi~g~v-~t~-e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQ---GDSIYQ----LEMIKYIKKTYP-ELDVIGGNV-VTM-YQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCC---CCcHHH----HHHHHHHHHhCC-CCcEEEecC-CCH-HHHHHHHHcCcCEEEE
Confidence 355778999999999999642 112121 233344444444 244433333 323 3356667899999865
No 355
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=22.28 E-value=2e+02 Score=24.61 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 020229 15 RELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAG 53 (329)
Q Consensus 15 ~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~G 53 (329)
-||..|++ .|.||++++.++.+ +...|....++|
T Consensus 126 DEL~~Al~---~GlIT~~qf~~Ay~--~a~aVe~elr~g 159 (183)
T COG2306 126 DELEDALR---YGLITPEQFEKAYR--TANAVEAELRNG 159 (183)
T ss_pred HHHHHHHH---cCCCCHHHHHHHHH--HHHHHHHHHhcC
Confidence 46777765 59999999999998 445555554544
No 356
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=22.22 E-value=5.3e+02 Score=22.45 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc-----cCh-------HHHHHHHHhC
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY-----SNF-------NDIIHSIIDM 258 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~-----Gn~-------~~i~~~l~~~ 258 (329)
+++.+...|+++|.+-==.+.. .+...+ .+.+..+.+..+ .++ +-+|+ |.+ -.++..+.++
T Consensus 15 ~~~~~~~~~~D~vElRlD~l~~-~~~~~~---~~~l~~lr~~~~--~pi-I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 87 (224)
T PF01487_consen 15 ELEEAESSGADAVELRLDYLEN-DSAEDI---SEQLAELRRSLD--LPI-IFTVRTKEEGGRFQGSEEEYLELLERAIRL 87 (224)
T ss_dssp HHHHHHHTTTSEEEEEGGGSTT-TSHHHH---HHHHHHHHHHCT--SEE-EEE--BGGGTSSBSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEeccccc-cChHHH---HHHHHHHHHhCC--CCE-EEEecccccCCCCcCCHHHHHHHHHHHHHc
Confidence 3455656699988876212221 112222 333444443332 444 44555 333 2578888888
Q ss_pred CCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCC
Q 020229 259 DADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET 319 (329)
Q Consensus 259 ~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~ 319 (329)
++|.+.+|+............. .. +..-+++-.- ......+-+++...++++. ..++
T Consensus 88 ~~d~iDiE~~~~~~~~~~~~~~-~~-~~~~iI~S~H-~f~~tp~~~~l~~~~~~~~-~~ga 144 (224)
T PF01487_consen 88 GPDYIDIELDLFPDDLKSRLAA-RK-GGTKIILSYH-DFEKTPSWEELIELLEEMQ-ELGA 144 (224)
T ss_dssp TSSEEEEEGGCCHHHHHHHHHH-HH-TTSEEEEEEE-ESS---THHHHHHHHHHHH-HTT-
T ss_pred CCCEEEEEcccchhHHHHHHHH-hh-CCCeEEEEec-cCCCCCCHHHHHHHHHHHH-hcCC
Confidence 9999999998543322111110 01 2222333221 1223455566888888776 3443
No 357
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=22.22 E-value=6e+02 Score=23.13 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=42.6
Q ss_pred HHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-----HHHHHHHHhCCCcEEEE
Q 020229 191 VISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-----NDIIHSIIDMDADVITI 265 (329)
Q Consensus 191 ~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-----~~i~~~l~~~~~d~~~l 265 (329)
.++...++|++.|.+--|.+.. .+++.+ .+.++.+.+..+ .++.++.+.+.. .+.+..|.+. -+...+
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~-~~~~~i---~~~~~~ia~~~~--~pv~lYn~P~~~g~~l~~~~~~~L~~~-p~v~gi 160 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNK-PTQEGL---YQHFKAIAEATD--LPIILYNVPGRTGVDILPETVARLAEH-PNIVGI 160 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCC-CCHHHH---HHHHHHHHhcCC--CCEEEEECccccCCCCCHHHHHHHHcC-CCEEEE
Confidence 3556677899999998887542 344333 555666666553 677887764322 2455666543 244555
Q ss_pred EcCC
Q 020229 266 ENSR 269 (329)
Q Consensus 266 E~~~ 269 (329)
=.+.
T Consensus 161 K~s~ 164 (292)
T PRK03170 161 KEAT 164 (292)
T ss_pred EECC
Confidence 4443
No 358
>PRK01060 endonuclease IV; Provisional
Probab=22.21 E-value=5.7e+02 Score=22.85 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCCh-HHHHHHHHHHHHHHcCCCCCceeEEeeccc------C-hHH
Q 020229 179 SLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDS-HKLHAFIHSFRITNCGVQDTTQIHTHMCYS------N-FND 250 (329)
Q Consensus 179 ~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G------n-~~~ 250 (329)
+..+.-.+.+++.++...+.||.+|.+--......... +.++.+.+.++.+.+... ++.+.+..+++ + ...
T Consensus 82 ~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~-gv~l~iEn~~~~~~~~~~~~~~ 160 (281)
T PRK01060 82 EILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQ-GVTIVLENTAGQGSELGRRFEE 160 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCCCCCcccCCHHH
Confidence 33445556777778888889999988853221111122 245667788887765433 47888887643 2 234
Q ss_pred HHHHHHhCCC---cEEEEEcC
Q 020229 251 IIHSIIDMDA---DVITIENS 268 (329)
Q Consensus 251 i~~~l~~~~~---d~~~lE~~ 268 (329)
+...+..++- =++.+|..
T Consensus 161 ~~~l~~~v~~~~~vg~~lD~g 181 (281)
T PRK01060 161 LARIIDGVEDKSRVGVCLDTC 181 (281)
T ss_pred HHHHHHhcCCcccEEEEEeHH
Confidence 5555545543 25777765
No 359
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=22.18 E-value=3.3e+02 Score=20.16 Aligned_cols=52 Identities=8% Similarity=0.143 Sum_probs=32.0
Q ss_pred HHHHHHHHHHh-C-C---CCCHHHHHHHHHHHH----------HHHHHHHHHhCCccccCCCcccchhH
Q 020229 15 RELKFALESFW-D-G---KSSAEDLQKVSADLR----------SSIWKQMSEAGIKYIPSNTFSYYDQV 68 (329)
Q Consensus 15 ~eL~~a~~~~~-~-g---~is~~el~~~~~~~~----------~~~i~~Q~~~Gld~itdGe~~~~d~~ 68 (329)
..|+.+..+|. + | .||.+||+......- .++-+... .+|.=.||.+.+..|+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~--~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMK--KLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHH--HcCCCCCCcCcHHHHH
Confidence 34666666643 2 3 599999999987762 12222222 3455578888876543
No 360
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.01 E-value=6.1e+02 Score=23.08 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=42.7
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc---cCh--HHHHHHHHhCCCcEEEEE
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY---SNF--NDIIHSIIDMDADVITIE 266 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~---Gn~--~~i~~~l~~~~~d~~~lE 266 (329)
++...++|++.|.+--|... ..+++.+ .+.+..+.+..+ .++.+..+. |+. -+++..|.+.+ +.+.+=
T Consensus 86 a~~a~~~Gad~v~v~pP~y~-~~~~~~i---~~~~~~i~~~~~--~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v~giK 158 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYN-KPTQEGL---YQHFKAIAEEVD--LPIILYNVPSRTGVSLYPETVKRLAEEP-NIVAIK 158 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCC-CCCHHHH---HHHHHHHHhcCC--CCEEEEECcHHhcCCCCHHHHHHHHcCC-CEEEEE
Confidence 45566789999999888854 2344443 455566665553 667777653 321 24666776654 566664
Q ss_pred cCC
Q 020229 267 NSR 269 (329)
Q Consensus 267 ~~~ 269 (329)
.+.
T Consensus 159 ~s~ 161 (285)
T TIGR00674 159 EAT 161 (285)
T ss_pred eCC
Confidence 433
No 361
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=21.87 E-value=5.2e+02 Score=24.67 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=39.9
Q ss_pred HHHHHHHhC--CCcEEEEEcCCCc-h---hHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceE
Q 020229 250 DIIHSIIDM--DADVITIENSRSD-E---KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 323 (329)
Q Consensus 250 ~i~~~l~~~--~~d~~~lE~~~~~-~---~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~ 323 (329)
+.++.|.+. .+|.+.+|.++.+ . +.++.+++.++ +..++.|+| -|+|..++.++. |.+=+.
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p-~~~viaGNV-------~T~e~a~~Li~a-----GAD~ik 176 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFP-EHTIMAGNV-------VTGEMVEELILS-----GADIVK 176 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCC-CCeEEEecc-------cCHHHHHHHHHc-----CCCEEE
Confidence 567777776 4999999998753 2 34445554333 678899975 566666655543 444444
Q ss_pred eC
Q 020229 324 VN 325 (329)
Q Consensus 324 is 325 (329)
++
T Consensus 177 Vg 178 (343)
T TIGR01305 177 VG 178 (343)
T ss_pred Ec
Confidence 44
No 362
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.86 E-value=5.4e+02 Score=22.47 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=60.0
Q ss_pred HHHHHHHCCCCeE--EecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc-c-------ChHH---HHHHHHh
Q 020229 191 VISELKAAGASWI--QFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY-S-------NFND---IIHSIID 257 (329)
Q Consensus 191 ~i~~l~~aG~~~I--QiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~-G-------n~~~---i~~~l~~ 257 (329)
++++..++|++.| |+..-.+. ..+.++.+.++.+.+. +. ++++++-++. | +.+. ......+
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~~~i~~v~~~~~-~~--g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~ 154 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEE---EREMLEELARVAAEAH-KY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAE 154 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCch---HHHHHHHHHHHHHHHH-Hc--CCCEEEEEeccCCcccCccCHHHHHHHHHHHHH
Confidence 4566778999966 87754322 1222233333333332 22 2455555543 1 1111 1233567
Q ss_pred CCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCceEe
Q 020229 258 MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWV 324 (329)
Q Consensus 258 ~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~l~i 324 (329)
+++|.+.+-+.. +.+.++.+.+..+.. .++.|= ....|+++..+.++++++ .|.+.+.+
T Consensus 155 ~GaD~Ik~~~~~-~~~~~~~i~~~~~~p-vv~~GG-----~~~~~~~~~l~~~~~~~~-~Ga~gv~v 213 (235)
T cd00958 155 LGADIVKTKYTG-DAESFKEVVEGCPVP-VVIAGG-----PKKDSEEEFLKMVYDAME-AGAAGVAV 213 (235)
T ss_pred HCCCEEEecCCC-CHHHHHHHHhcCCCC-EEEeCC-----CCCCCHHHHHHHHHHHHH-cCCcEEEe
Confidence 899999996543 333444443211111 233332 234577777777777765 45554444
No 363
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.83 E-value=5.8e+02 Score=22.75 Aligned_cols=115 Identities=9% Similarity=0.036 Sum_probs=59.5
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChH-HHHHHHHhCCCcEEEEEcCCC
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENSRS 270 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~-~i~~~l~~~~~d~~~lE~~~~ 270 (329)
.+.+...||++|-+-==.+.. .+...+..+...++.. + .+ .+-+++|.-+ .++..+.+..+|.+.+|+...
T Consensus 39 ~~~~~~~~aDivE~RlD~l~~-~~~~~~~~~~~~l~~~--~----~p-~I~T~R~~~~~~~l~~a~~~~~d~vDIEl~~~ 110 (229)
T PRK01261 39 FKTKVLSDKNLYEIRFDLFHD-HSIESEPEIISALNEM--D----ID-YIFTYRGVDARKYYETAIDKMPPAVDLDINLI 110 (229)
T ss_pred HHHhhcCCCCEEEEEeeccCC-CChHHHHHHHHHHhhc--C----CC-EEEEEcCCCHHHHHHHHHhhCCCEEEEEcccc
Confidence 345666899986543112221 2223332222222211 2 23 3558877532 456666667789999998751
Q ss_pred chhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCC--CceEeCCC
Q 020229 271 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET--NILWVNPD 327 (329)
Q Consensus 271 ~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~--~~l~ispd 327 (329)
.. +. .. ..+..++ +|.|++ +.+++..++++..+. ++ =++.++|+
T Consensus 111 ~~--~~-~~---~~~~kvI---vS~Htp---~~eeL~~~l~~m~~~-gaDI~KiAvmp~ 156 (229)
T PRK01261 111 GK--LE-FR---PRNTMLM---VSYHTN---NSDNMPAILDIMNEK-NPDYVKVACNYN 156 (229)
T ss_pred hh--hh-hh---cCCCeEE---EEeCCC---CHHHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence 11 11 11 1233332 355654 778888888877554 43 35555554
No 364
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=21.51 E-value=4.6e+02 Score=23.50 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=41.2
Q ss_pred HHHCCCCeEEecCCccCC--CCCh---HHHHHHHHHHHHHHcCCCCCceeEE--eecccC-hH---HHHHHHHhCCCcEE
Q 020229 195 LKAAGASWIQFDEPLLVM--DLDS---HKLHAFIHSFRITNCGVQDTTQIHT--HMCYSN-FN---DIIHSIIDMDADVI 263 (329)
Q Consensus 195 l~~aG~~~IQiDEP~l~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~i~l--H~C~Gn-~~---~i~~~l~~~~~d~~ 263 (329)
+.++|++.|.+---.++. ..++ -.++++....+.+..... .++.+ -..||| .. .....+.++++.++
T Consensus 25 ~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~--iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi 102 (238)
T PF13714_consen 25 AERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVS--IPVIVDADTGYGNDPENVARTVRELERAGAAGI 102 (238)
T ss_dssp HHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSS--SEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEE
T ss_pred HHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhc--CcEEEEcccccCchhHHHHHHHHHHHHcCCcEE
Confidence 456798888876332221 1111 123455566666666553 45544 456788 54 45666678999999
Q ss_pred EEEcC
Q 020229 264 TIENS 268 (329)
Q Consensus 264 ~lE~~ 268 (329)
++|=.
T Consensus 103 ~IEDq 107 (238)
T PF13714_consen 103 NIEDQ 107 (238)
T ss_dssp EEESB
T ss_pred Eeecc
Confidence 99954
No 365
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.50 E-value=2.6e+02 Score=24.95 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEee
Q 020229 198 AGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHM 243 (329)
Q Consensus 198 aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 243 (329)
.--+||.+|||.=..|+.. --.....++++.+.+.+..-+++|=
T Consensus 152 QdTdyvlLDEPLNNLDmkH--sv~iMk~Lrrla~el~KtiviVlHD 195 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKH--SVQIMKILRRLADELGKTIVVVLHD 195 (252)
T ss_pred ccCcEEEecCcccccchHH--HHHHHHHHHHHHHHhCCeEEEEEec
Confidence 3567999999986555421 1112344455555554445566673
No 366
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.45 E-value=5.9e+02 Score=22.77 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC-hHHHHHHHHHHHHHHcCC-CCCceeEEeecccCh----HHHHHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD-SHKLHAFIHSFRITNCGV-QDTTQIHTHMCYSNF----NDIIHS 254 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~lH~C~Gn~----~~i~~~ 254 (329)
-.+..+.+++.++...+.||++|.+.-.......+ .+..+.+.+.++.+.+-. +.++.+.+|.+.+++ ...+..
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~l 173 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGY 173 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHH
Confidence 44555667778888899999999884211111111 233345555555554322 124678888874432 345556
Q ss_pred HHhCCCc--EEEEEc
Q 020229 255 IIDMDAD--VITIEN 267 (329)
Q Consensus 255 l~~~~~d--~~~lE~ 267 (329)
+.+++-+ ++.+|.
T Consensus 174 l~~v~~~~lgl~~D~ 188 (283)
T PRK13209 174 AHYLNSPWFQLYPDI 188 (283)
T ss_pred HHHhCCCccceEecc
Confidence 6555433 344554
No 367
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.16 E-value=6e+02 Score=25.63 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcC---CCCCceeEEeecccChHHHHHHHHhCCCcE
Q 020229 186 PIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCG---VQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~ 262 (329)
+.+.+.++++.++|++.|.|-|..-. +.|..+..++..+...... ++ .-++.|.=+|-...-.-.-.+.+++.
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~--~~P~~~~~~i~~l~~~~~~~~~v~--l~~H~HND~GlAvANslaAv~aGa~~ 224 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGY--TTPEEFGELIKTLRERVPNIDKAI--ISVHCHNDLGLAVANSLAAVEAGARQ 224 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCC--CCHHHHHHHHHHHHHhCCCcccce--EEEEecCCCCHHHHHHHHHHHhCCCE
Q ss_pred EE
Q 020229 263 IT 264 (329)
Q Consensus 263 ~~ 264 (329)
+.
T Consensus 225 Vd 226 (513)
T PRK00915 225 VE 226 (513)
T ss_pred EE
No 368
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.14 E-value=4.1e+02 Score=26.23 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccChHHHHHHHHhCCCcEEEEE
Q 020229 189 KEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~~i~~~l~~~~~d~~~lE 266 (329)
.+.+++|.++|+++|.||-.- .-+ . ...+.+..+.+..+ +.+++.=.| . ..+-...+.++++|++-+=
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~---g~~-~---~~~~~i~~i~~~~~-~~~vi~G~v-~-t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSH---GHS-I---YVIDSIKEIKKTYP-DLDIIAGNV-A-TAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCC---CcH-h---HHHHHHHHHHHhCC-CCCEEEEeC-C-CHHHHHHHHHhCCCEEEEC
Confidence 456778999999999998322 111 1 22344455555444 355544222 1 2245677788999998653
No 369
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.09 E-value=5.9e+02 Score=22.62 Aligned_cols=89 Identities=9% Similarity=-0.019 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCC-hHHHHHHHHHHHHHHcCC-CCCceeEEeec-------ccChHHH
Q 020229 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLD-SHKLHAFIHSFRITNCGV-QDTTQIHTHMC-------YSNFNDI 251 (329)
Q Consensus 181 ~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~lH~C-------~Gn~~~i 251 (329)
.++-.+.+++.++.....||+.|.+--.......+ .+..+.+.+.++.+.+-. +.++++.+|.- ..+...+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~ 164 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDV 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHH
Confidence 34445667777788888999998884221111112 233455666666655422 12467777763 2344566
Q ss_pred HHHHHhCCC--cEEEEEcCC
Q 020229 252 IHSIIDMDA--DVITIENSR 269 (329)
Q Consensus 252 ~~~l~~~~~--d~~~lE~~~ 269 (329)
+..+.+.+- =++.+|...
T Consensus 165 ~~l~~~~~~~~v~~~~D~~h 184 (275)
T PRK09856 165 LHALALVPSPRLFSMVDICA 184 (275)
T ss_pred HHHHHHcCCCcceeEEeecc
Confidence 666665542 345667653
No 370
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=21.04 E-value=4e+02 Score=26.76 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=27.6
Q ss_pred HHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeec
Q 020229 192 ISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMC 244 (329)
Q Consensus 192 i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C 244 (329)
++++.++|++.|.|-|..-. ..|..+..+++.+.+.....+ +.++.+|+-
T Consensus 152 ~~~~~~~Ga~~i~l~DTvG~--~~P~~~~~~i~~l~~~~~~~~-~v~l~~H~H 201 (494)
T TIGR00973 152 VEAAINAGATTINIPDTVGY--ALPAEYGNLIKGLRENVPNID-KAILSVHCH 201 (494)
T ss_pred HHHHHHcCCCEEEeCCCCCC--CCHHHHHHHHHHHHHhhcccc-CceEEEEeC
Confidence 44566789999999887744 235555444444333322221 245666654
No 371
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.01 E-value=6.5e+02 Score=23.08 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCCeEEecCCc
Q 020229 189 KEVISELKAAGASWIQFDEPL 209 (329)
Q Consensus 189 ~~~i~~l~~aG~~~IQiDEP~ 209 (329)
.+.++.|.++|+++|.+==|.
T Consensus 34 ~e~i~~L~~~GaD~iELGvPf 54 (265)
T COG0159 34 LEIIKTLVEAGADILELGVPF 54 (265)
T ss_pred HHHHHHHHhCCCCEEEecCCC
Confidence 344677899999999987665
No 372
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=20.93 E-value=3e+02 Score=25.12 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcC
Q 020229 198 AGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCG 232 (329)
Q Consensus 198 aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~ 232 (329)
.-.+++-+|||.-..|.. ....+.+.++++.+.
T Consensus 156 ~~p~lllLDEP~~gvD~~--~~~~i~~lL~~l~~e 188 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVA--GQKEIYDLLKELRQE 188 (254)
T ss_pred cCCCEEEecCCcccCCHH--HHHHHHHHHHHHHHC
Confidence 467899999999886643 223345556666543
No 373
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=20.72 E-value=9.4e+02 Score=24.81 Aligned_cols=124 Identities=13% Similarity=0.215 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecc--------c-ChHHHH
Q 020229 182 PKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCY--------S-NFNDII 252 (329)
Q Consensus 182 ~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~--------G-n~~~i~ 252 (329)
+++.+.|++.++.|.++|+|+|-+.- + .+..+.....++.+... .+ ++++-+.+ | ++..++
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET--~---~~~~Ea~a~~~a~~~~~-~~----p~~~Sf~~~~~g~l~~G~~~~~~~ 190 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLET--F---YDLEELLLALEAAREKT-DL----PIIAQVAFHEDGVTQNGTSLEEAL 190 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEc--c---CCHHHHHHHHHHHHHhC-CC----cEEEEEEECCCCeeCCCCCHHHHH
Confidence 66777899999999999999888761 1 12344444455554332 12 33332221 2 234677
Q ss_pred HHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCC---------CCCCCCHHHHHHHHHHHHHh
Q 020229 253 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIH---------SPRIPSTEEIADRINKMLAV 316 (329)
Q Consensus 253 ~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~---------~~~~e~~e~i~~ri~~a~~~ 316 (329)
..+.+.+++++.+=....+....+.++. +......-+|+.+.. .....+++..++.+.+..+.
T Consensus 191 ~~~~~~~~~avGiNC~~~p~~~~~~l~~-l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 262 (612)
T PRK08645 191 KELVAAGADVVGLNCGLGPYHMLEALER-IPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ 262 (612)
T ss_pred HHHHhCCCCEEEecCCCCHHHHHHHHHH-HHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh
Confidence 8887888999999877644444444432 111112344443321 12335788887777776553
No 374
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=20.72 E-value=6.7e+02 Score=23.07 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHHHHHCCCCeEEec--CCccCC--CCC---hHHHHHHHHHHHHHHcCCCCCceeEEeeccc--ChHHHHHHHHhCCCcE
Q 020229 192 ISELKAAGASWIQFD--EPLLVM--DLD---SHKLHAFIHSFRITNCGVQDTTQIHTHMCYS--NFNDIIHSIIDMDADV 262 (329)
Q Consensus 192 i~~l~~aG~~~IQiD--EP~l~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~G--n~~~i~~~l~~~~~d~ 262 (329)
++.+.++|+++|.|+ -|.... ... .+..+.+.+.++.+.+..+ .++.+-+--+ +...+...+.+.++|+
T Consensus 119 a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~Pv~vKl~~~~~~~~~~a~~~~~~Gadg 196 (299)
T cd02940 119 AKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK--IPVIAKLTPNITDIREIARAAKEGGADG 196 (299)
T ss_pred HHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC--CCeEEECCCCchhHHHHHHHHHHcCCCE
Confidence 445566799999887 454311 000 0112233344444443332 4566666521 3346777788899999
Q ss_pred EEE
Q 020229 263 ITI 265 (329)
Q Consensus 263 ~~l 265 (329)
+.+
T Consensus 197 i~~ 199 (299)
T cd02940 197 VSA 199 (299)
T ss_pred EEE
Confidence 973
No 375
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.71 E-value=6.3e+02 Score=22.80 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCeEEecCCccCCCCC--------hHHHHHHHHHHHHHHcCCCCCceeEEeecc-cChH---------
Q 020229 188 YKEVISELKAAGASWIQFDEPLLVMDLD--------SHKLHAFIHSFRITNCGVQDTTQIHTHMCY-SNFN--------- 249 (329)
Q Consensus 188 ~~~~i~~l~~aG~~~IQiDEP~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~-Gn~~--------- 249 (329)
+.+.++.+.+.|++.+|| ++.... ....+++.++..+..-.+ ..+.+|.|| =|..
T Consensus 13 ~~~a~~~~~~~G~~~~qi----f~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~Hapy~iNlas~~~~~r~~ 85 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMF----FLKSPRWWRRPMLEEEVIDWFKAALETNKNLS---QIVLVHAPYLINLASPDEEKEEK 85 (274)
T ss_pred HHHHHHHHHHhCCCEEEE----EecCccccCCCCCCHHHHHHHHHHHHHcCCCC---cceeccCCeeeecCCCCHHHHHH
Q ss_pred ------HHHHHHHhCCCcEEEEEc----CCCchhHHHHhhh------cccCCCeeeeeeecCCCCCCC-CHHHHHHHHHH
Q 020229 250 ------DIIHSIIDMDADVITIEN----SRSDEKLLSVFRE------GVKYGAGIGPGVYDIHSPRIP-STEEIADRINK 312 (329)
Q Consensus 250 ------~i~~~l~~~~~d~~~lE~----~~~~~~~l~~l~~------~~~~~~~i~~Gvvd~~~~~~e-~~e~i~~ri~~ 312 (329)
..++.-..++++.+.+-- .....+.++.+.+ ....+-.+.+=++....+.+. +++++.+.+++
T Consensus 86 sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~ 165 (274)
T TIGR00587 86 SLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV 165 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Q ss_pred HHHhcCC-CceEeCCCCC
Q 020229 313 MLAVLET-NILWVNPDLH 329 (329)
Q Consensus 313 a~~~v~~-~~l~ispdCG 329 (329)
. +. +++.++=|+|
T Consensus 166 ~----~~~~~lg~~lDt~ 179 (274)
T TIGR00587 166 I----VDKRRIGVCLDTC 179 (274)
T ss_pred c----CCCCceEEEEEhh
No 376
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=20.66 E-value=3.3e+02 Score=25.70 Aligned_cols=68 Identities=6% Similarity=0.115 Sum_probs=41.4
Q ss_pred CCCCeEEecCCccCCCCC---hHHHHHHHHHHHHHHcCCCCCceeEEee-cccChHHHHHHHHhCCCcEEEEEc
Q 020229 198 AGASWIQFDEPLLVMDLD---SHKLHAFIHSFRITNCGVQDTTQIHTHM-CYSNFNDIIHSIIDMDADVITIEN 267 (329)
Q Consensus 198 aG~~~IQiDEP~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~lH~-C~Gn~~~i~~~l~~~~~d~~~lE~ 267 (329)
.+++.++|.=+.+..... ...++...+.++.+.+.++ .+|++.. .+|.....+..+.++++|++.+--
T Consensus 140 i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~--vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 140 IEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLS--VPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred hcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 356677776433332111 1223334455666666553 5777764 346666788889999999999953
No 377
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=20.57 E-value=6.6e+02 Score=24.45 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=49.4
Q ss_pred HHHHHHHHCC--CCeEEecCCccCCCCChH--HHHHHHHHHHHHHcCCCCCceeEEeecccChH------HHHHHHHhCC
Q 020229 190 EVISELKAAG--ASWIQFDEPLLVMDLDSH--KLHAFIHSFRITNCGVQDTTQIHTHMCYSNFN------DIIHSIIDMD 259 (329)
Q Consensus 190 ~~i~~l~~aG--~~~IQiDEP~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~~------~i~~~l~~~~ 259 (329)
+.++.+.+.| .|+|-+|-|+++-.-... ..+.+.+.+..+.+-+.++..+.+-+|.+.+. -+......++
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~ 358 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAG 358 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcC
Confidence 3455566666 559999999998643222 22445666666666666667888899977664 2345555666
Q ss_pred CcEEEEE
Q 020229 260 ADVITIE 266 (329)
Q Consensus 260 ~d~~~lE 266 (329)
.+.--++
T Consensus 359 ~~~~~~~ 365 (393)
T COG1092 359 RRAQEIE 365 (393)
T ss_pred CcEEEee
Confidence 6666665
No 378
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=20.42 E-value=5.8e+02 Score=25.49 Aligned_cols=76 Identities=7% Similarity=0.071 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCce-eEEeecccChH-HHHHHHHhCCCcEE
Q 020229 186 PIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQ-IHTHMCYSNFN-DIIHSIIDMDADVI 263 (329)
Q Consensus 186 ~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~lH~C~Gn~~-~i~~~l~~~~~d~~ 263 (329)
+.+.++++++.+.|++-+.|- ...+.+...++.+.++++.+.+...+... ..+|+.-|..+ +-+..|.+.+++.+
T Consensus 118 EEI~~ea~~~~~~G~~~i~Lv---sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv~~~ 194 (469)
T PRK09613 118 EEIREEVKALEDMGHKRLALV---AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGIGTY 194 (469)
T ss_pred HHHHHHHHHHHHCCCCEEEEE---eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCCCEE
Confidence 345556677889999977772 12222223344445555555432111111 12455545442 56889999999985
Q ss_pred E
Q 020229 264 T 264 (329)
Q Consensus 264 ~ 264 (329)
.
T Consensus 195 ~ 195 (469)
T PRK09613 195 Q 195 (469)
T ss_pred E
Confidence 3
No 379
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=20.37 E-value=6.7e+02 Score=22.93 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHCCCCeEEecCCcc----CC-CCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh----HH----HHHHHHhCCCc
Q 020229 195 LKAAGASWIQFDEPLL----VM-DLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF----ND----IIHSIIDMDAD 261 (329)
Q Consensus 195 l~~aG~~~IQiDEP~l----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~----~~----i~~~l~~~~~d 261 (329)
+.++|++.|..-+-.. .+ |...-.++.+....+.+.++.+ ...++.-+-||+| .. ....+.+.+++
T Consensus 31 ~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~-~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~ 109 (264)
T PRK00311 31 FDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAP-RALVVADMPFGSYQASPEQALRNAGRLMKEAGAH 109 (264)
T ss_pred HHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCC-CCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCe
Confidence 4567999887643321 11 1111234555555566666665 2346666777877 32 23333449999
Q ss_pred EEEEEcC
Q 020229 262 VITIENS 268 (329)
Q Consensus 262 ~~~lE~~ 268 (329)
++.+|=.
T Consensus 110 aVkiEdg 116 (264)
T PRK00311 110 AVKLEGG 116 (264)
T ss_pred EEEEcCc
Confidence 9999954
No 380
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.28 E-value=6.4e+02 Score=22.69 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEeecccCh-----HHHHHHHHhCCCcEEE
Q 020229 190 EVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTHMCYSNF-----NDIIHSIIDMDADVIT 264 (329)
Q Consensus 190 ~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~C~Gn~-----~~i~~~l~~~~~d~~~ 264 (329)
+.++...++|++.|.+--|.... .+++.+ .+.+..+.+.. +.++.++.+.+.+ .+.+..|.+. -+...
T Consensus 83 ~~a~~a~~~Gad~v~v~pP~y~~-~~~~~~---~~~~~~ia~~~--~~pi~iYn~P~~tg~~l~~~~~~~L~~~-~~v~g 155 (281)
T cd00408 83 ELARHAEEAGADGVLVVPPYYNK-PSQEGI---VAHFKAVADAS--DLPVILYNIPGRTGVDLSPETIARLAEH-PNIVG 155 (281)
T ss_pred HHHHHHHHcCCCEEEECCCcCCC-CCHHHH---HHHHHHHHhcC--CCCEEEEECccccCCCCCHHHHHHHhcC-CCEEE
Confidence 34556678899999998887554 444444 45556666554 3677888774321 2456666653 24444
Q ss_pred EEcC
Q 020229 265 IENS 268 (329)
Q Consensus 265 lE~~ 268 (329)
+=.+
T Consensus 156 iK~s 159 (281)
T cd00408 156 IKDS 159 (281)
T ss_pred EEeC
Confidence 4443
Done!