BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020230
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 67/302 (22%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ LVV P V + R++LE+
Sbjct: 22 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 80
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I+ ++ + T + +KL W +Y K +++D D V NID LFD
Sbjct: 81 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 140
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 141 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 162
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 163 PSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPA 222
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-----------GKEENMDRTDIKLLVKKWWDIYEDE 287
V KVVH+ KPW +T + NM + +L WW+I+
Sbjct: 223 FKVFGASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTN 278
Query: 288 SL 289
L
Sbjct: 279 VL 280
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 67/302 (22%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ LVV P V + R++LE+
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I+ ++ + T + +KL W +Y K +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 120 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 141
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 142 PSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPA 201
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-----------GKEENMDRTDIKLLVKKWWDIYEDE 287
V KVVH+ KPW +T + NM + +L WW+I+
Sbjct: 202 FKVFGASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTN 257
Query: 288 SL 289
L
Sbjct: 258 VL 259
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 67/302 (22%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ LVV P V + R++LE+
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I+ ++ + T + +KL W +Y K +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 120 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 141
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 142 PSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIFSYLPA 201
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-----------GKEENMDRTDIKLLVKKWWDIYEDE 287
V KVVH+ KPW +T + NM + +L WW+I+
Sbjct: 202 FKVFGASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTN 257
Query: 288 SL 289
L
Sbjct: 258 VL 259
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 67/302 (22%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ LVV P V + R++LE+
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I+ ++ + T + +KL W +Y K +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 120 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 141
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 142 PSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPA 201
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-----------GKEENMDRTDIKLLVKKWWDIYEDE 287
V KVVH+ KPW +T + NM + +L WW+I+
Sbjct: 202 FKVFGASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTN 257
Query: 288 SL 289
L
Sbjct: 258 VL 259
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 6 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 64
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 65 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 124
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 125 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 146
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 147 PSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 206
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 207 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 259
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 112/290 (38%), Gaps = 61/290 (21%)
Query: 16 RAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGCIVRE 73
+A+VT L N Y KG + L L++ ++ L V P V + R+ LE I +
Sbjct: 4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62
Query: 74 IEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYF 133
I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 63 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE---- 118
Query: 134 YAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYEPNLL 189
E+ + P P FN+G+FVY+P++
Sbjct: 119 ----------------------------------ELSAAPDPGWPDCFNSGVFVYQPSVE 144
Query: 190 TYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLENVDV- 243
TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 145 TYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAF 204
Query: 244 -DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 205 GANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 253
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 113/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 61/294 (20%)
Query: 12 NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
++ +A+VT L N Y KG + L L++ ++ L V P V + R+ LE
Sbjct: 20 HMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEV 78
Query: 70 IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
I +I + T + +KL W +Y K +++D D V NID LF+
Sbjct: 79 ITVDILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 138
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
E+ + P P FN+G+FVY+
Sbjct: 139 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 160
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
P++ TY+ LL +Q LN +F DI K +P YNL ++ +L
Sbjct: 161 PSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 220
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-------GKEENMDRTDIK-LLVKKWWDIY 284
KVVH+ +KPW +T + E D T + WWDI+
Sbjct: 221 FKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 273
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 40/190 (21%)
Query: 92 VINYSKLRIWEFV-EYEKMIYLDGDIQVFDNIDHLFDA--PDGYFYAVMDCFCEKTWSNS 148
+ Y++L++ E++ + +K++YLD D+ V D++ L+D D + A +D F E+
Sbjct: 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER----- 135
Query: 149 PQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETV-----KVTPP 203
GY Q+ + YFNAG+ + HD+ + +
Sbjct: 136 ---QEGYKQKIGX---------ADGEYYFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDV 183
Query: 204 TIFAEQDFLNMYFK-------DIYKPIPPTYNLVVAMLW-RHLENVDVDK------VKVV 249
+ +QD LN FK + P Y RH + + D+ V V
Sbjct: 184 XQYQDQDILNGLFKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVS 243
Query: 250 HYCAAGSKPW 259
HYC +KPW
Sbjct: 244 HYCGP-AKPW 252
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 40/190 (21%)
Query: 92 VINYSKLRIWEFV-EYEKMIYLDGDIQVFDNIDHLFDA--PDGYFYAVMDCFCEKTWSNS 148
+ Y++L++ E++ + +K++YLD D+ V D++ L+D D + A +D F E+
Sbjct: 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVER----- 135
Query: 149 PQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETV-----KVTPP 203
GY Q+ + M + YFNAG+ + HD+ + +
Sbjct: 136 ---QEGYKQK--------IGM-ADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183
Query: 204 TIFAEQDFLNMYFK-------DIYKPIPPTYNLVVAMLW-RHLENVDVDK------VKVV 249
+ ++D LN FK + +P Y + RH + + D+ V V
Sbjct: 184 MQYQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVS 243
Query: 250 HYCAAGSKPW 259
HYC +KPW
Sbjct: 244 HYCGP-AKPW 252
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 212 LNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTG 263
+N+ KD++ IPP+Y V + W+ ++ V++ + + +GS P + +
Sbjct: 424 INVLIKDLFH-IPPSYKSTVTLSWKPVQKVEIGQKRASEDTTSGSPPKKSSA 474
>pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Gmp
pdb|3PY5|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Amp
pdb|3QH8|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Amp From Brucella Melitensis, Long Wavelength
Synchrotron Data
Length = 274
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 30/152 (19%)
Query: 112 LDGDIQVFDNIDHLFDAPDGYFYAV-----MDCFCEKTWSNSPQFTIGYCQQCPEKVQWP 166
LD + + DH+ D Y V MD + + N T GYC + P +P
Sbjct: 81 LDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYP 140
Query: 167 -------VEMGSPPPLYFNAGMFVYEPNLLTYHD-------LLETVKVTPPTIFAEQDFL 212
+ +P + G +EP + D + V T + F EQ
Sbjct: 141 PILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSVVYCTDVSAFPEQSL- 199
Query: 213 NMYFKDI---------YKPIPPTYNLVVAMLW 235
Y KD Y+P P ++L A+ W
Sbjct: 200 -QYIKDADVLIIGALQYRPHPSHFSLGEALEW 230
>pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Gmp From Brucella Melitensis
Length = 293
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 59/167 (35%), Gaps = 32/167 (19%)
Query: 112 LDGDIQVFDNIDHLFDAPDGYFYAV-----MDCFCEKTWSNSPQFTIGYCQQCPEKVQWP 166
LD + + DH+ D Y V MD + + N T GYC + P +P
Sbjct: 100 LDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYP 159
Query: 167 -------VEMGSPPPLYFNAGMFVYEPNLLTYHD-------LLETVKVTPPTIFAEQDFL 212
+ +P + G +EP + D + V T + F EQ
Sbjct: 160 PILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSVVYCTDVSAFPEQSL- 218
Query: 213 NMYFKDI---------YKPIPPTYNLVVAMLWRHLENVDVDKVKVVH 250
Y KD Y+P P ++L A+ W +E + + + H
Sbjct: 219 -QYIKDADVLIIGALQYRPHPSHFSLGEALEW--IEKLSPKRAILTH 262
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 ESQGCIVREIEPVYPPENQTEFAMAYYVINYSKL--RIWEFVEYEKMIYLDGDIQVF--- 119
E+ VR+I +NQTE + +INY+K + W + M GD+Q F
Sbjct: 66 ETDRATVRKIRDAI--DNQTEVTVQ--LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGV 121
Query: 120 --DNIDHLFDAPD 130
D +H+ DA +
Sbjct: 122 QLDGTEHVRDAAE 134
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 ESQGCIVREIEPVYPPENQTEFAMAYYVINYSKL--RIWEFVEYEKMIYLDGDIQVF--- 119
E+ VR+I +NQTE + +INY+K + W + M GD+Q F
Sbjct: 66 ETDRATVRKIRDAI--DNQTEVTVQ--LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGV 121
Query: 120 --DNIDHLFDAPD 130
D +H+ DA +
Sbjct: 122 QLDGTEHVRDAAE 134
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 ESQGCIVREIEPVYPPENQTEFAMAYYVINYSKL--RIWEFVEYEKMIYLDGDIQVF--- 119
E+ VR+I +NQTE + +INY+K + W + M GD+Q F
Sbjct: 66 ETDRATVRKIRDAI--DNQTEVTVQ--LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGV 121
Query: 120 --DNIDHLFDAPD 130
D +H+ DA +
Sbjct: 122 QLDGTEHVRDAAE 134
>pdb|1DQN|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQN|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
pdb|1DQP|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
Length = 230
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 212 LNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENM-DR 270
+N Y+KD+ +P+ L A L+ L V + +H+ S ++ T +E + D
Sbjct: 52 MNEYYKDVAEPVTLVALLTGAYLYASLLTVHLTFPYTLHFVKVSS--YKGTRQESVVFDE 109
Query: 271 TDIKLLVKKWWDIYEDESLDYKN--FIVPATTNSEKIGSLFV 310
D+K L +K + DE +D + F + KI S FV
Sbjct: 110 EDLKQLKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFV 151
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 ESQGCIVREIEPVYPPENQTEFAMAYYVINYSKL--RIWEFVEYEKMIYLDGDIQVF--- 119
E+ VR+I +NQTE + +INY+K + W + M GD+Q F
Sbjct: 55 ETDRATVRKIRDAI--DNQTEVTVQ--LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGV 110
Query: 120 --DNIDHLFDAPD 130
D +H+ DA +
Sbjct: 111 QLDGTEHVRDAAE 123
>pdb|1S72|K Chain K, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|K Chain K, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|K Chain K, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|K Chain K, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|K Chain K, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|K Chain K, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|K Chain K, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|K Chain K, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|K Chain K, The Structure Of The Transition State Analogue "daa"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQ5|K Chain K, The Structure Of The Transition State Analogue "raa"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQ6|K Chain K, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|K Chain K, The Structure Of The Transition State Analogue "dca"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQ8|K Chain K, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|K Chain K, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|K Chain K, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|K Chain K, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|K Chain K, The Structure Of The Transition State Analogue "dan"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQN|K Chain K, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To
The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|K Chain K, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|K Chain K, The Structure Of The Transition State Analogue "rap"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|2OTJ|K Chain K, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|K Chain K, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|K Chain K, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|2QEX|K Chain K, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
Length = 132
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 29 VKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPEN 82
V G G L KA + V++ PE RQ+LE+ +VR+ +P+ P+
Sbjct: 34 VHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEA--VVVRQRKPIRRPDG 85
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 ESQGCIVREIEPVYPPENQTEFAMAYYVINYSKL--RIWEFVEYEKMIYLDGDIQVF--- 119
E+ VR+I +NQTE + +INY+K + W + M GD+Q F
Sbjct: 57 ETDRATVRKIRDAI--DNQTEVTVQ--LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGV 112
Query: 120 --DNIDHLFDAPD 130
D +H+ DA +
Sbjct: 113 QLDGTEHVRDAAE 125
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 216 FKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKL 275
KDI++ P Y V+A L +L++ D + + G + + +N D
Sbjct: 414 IKDIFRKYPNKYESVIATLCENLDSDDEPEARAAMIWIVG----EYAERSDNADE----- 464
Query: 276 LVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVVQQ 322
L++ + D + DES + ++ A I LF+ +E +VQQ
Sbjct: 465 LLESFLDGFHDESTQVQLQLLTA------IVKLFLKKPTETQELVQQ 505
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,839,119
Number of Sequences: 62578
Number of extensions: 489413
Number of successful extensions: 1040
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 47
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)