Query 020231
Match_columns 329
No_of_seqs 234 out of 1079
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 2E-36 6.9E-41 271.7 12.6 135 175-311 47-183 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 9.1E-33 3.1E-37 252.2 13.0 128 183-315 17-145 (212)
3 3phx_A RNA-directed RNA polyme 100.0 3.5E-30 1.2E-34 230.9 13.1 124 186-313 31-163 (185)
4 3phu_A RNA-directed RNA polyme 100.0 9.9E-30 3.4E-34 233.6 13.9 126 186-315 31-165 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 1.3E-21 4.4E-26 180.9 12.0 96 213-311 132-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 9.1E-20 3.1E-24 168.4 14.6 94 213-309 135-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.8 1.5E-18 5E-23 164.7 12.9 102 213-316 170-280 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 4.6E-18 1.6E-22 167.6 9.3 94 213-309 300-399 (399)
9 3dkb_A Tumor necrosis factor, 98.6 3E-07 1E-11 89.7 12.2 127 186-313 112-286 (390)
10 3zrh_A Ubiquitin thioesterase 98.5 5.7E-07 2E-11 89.0 11.1 128 185-313 188-352 (454)
11 2obb_A Hypothetical protein; s 27.1 11 0.00039 31.5 -0.4 19 176-194 31-49 (142)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=2e-36 Score=271.67 Aligned_cols=135 Identities=24% Similarity=0.511 Sum_probs=103.1
Q ss_pred HHHHHHH-HhCCcEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCcccccccccccHHHHHHhhcCCCCCC
Q 020231 175 ERLLNRL-QLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWG 253 (329)
Q Consensus 175 ~rL~~~L-~~~GL~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~~fv~~~~~eYl~~Msk~g~WG 253 (329)
+.|.+.| +.+||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|+++++||
T Consensus 47 ~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WG 126 (185)
T 3pfy_A 47 HWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG 126 (185)
T ss_dssp HHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------C
T ss_pred HHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccc
Confidence 3455555 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhCCcEEEEEcCCCceEEEEcC-CCCCCCCeEEEEecCCCcccccccCC
Q 020231 254 DHVTLQAAADLFHVKIVVITSFKDTCYIEILP-NVEKIKRAICLSFWAEVHYNSIFSQD 311 (329)
Q Consensus 254 g~iELqAlA~~y~v~I~V~ss~~~~~~i~i~P-~~~~~~~~I~Lsy~~g~HYdSV~~~~ 311 (329)
|++||+|||++|+++|+|++..... +.+.+ ......++|+|+|++++|||||+...
T Consensus 127 g~iEL~AlS~~~~v~I~V~~~~~~~--i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 127 NHIEMQAMAEMYNRPVEVYQYSTEP--INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN 183 (185)
T ss_dssp CHHHHHHHHHHHTSCEEEESSCSSC--SEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred hHHHHHHHHHhhCCcEEEEECCCCC--eEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence 9999999999999999999875432 33333 33456889999999999999998654
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.98 E-value=9.1e-33 Score=252.20 Aligned_cols=128 Identities=16% Similarity=0.297 Sum_probs=112.7
Q ss_pred hCCcEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCccccc-ccccccHHHHHHhhcCCCCCCchHHHHHH
Q 020231 183 LYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYE-GYVPMEYSEYLKKMSMSGEWGDHVTLQAA 261 (329)
Q Consensus 183 ~~GL~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~-~fv~~~~~eYl~~Msk~g~WGg~iELqAl 261 (329)
..||.+++|+|||||||||||+|| +++..|..||+.|++||++|++.|. .|++++|++||++|+++++|||++||+||
T Consensus 17 ~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Al 95 (212)
T 3by4_A 17 ENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGII 95 (212)
T ss_dssp CSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHH
Confidence 457999999999999999999999 9999999999999999999999996 56789999999999999999999999999
Q ss_pred HHhhCCcEEEEEcCCCceEEEEcCCCCCCCCeEEEEecCCCcccccccCCCCCC
Q 020231 262 ADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPL 315 (329)
Q Consensus 262 A~~y~v~I~V~ss~~~~~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~~d~~~ 315 (329)
|++|+++|.|++.... ..+.|.+. . ..++|+|+|+ |+|||||+...+...
T Consensus 96 s~~~~~~I~V~~~~~~-~~~~~~~~-~-~~~~I~L~Y~-g~HYdsl~~~~d~~~ 145 (212)
T 3by4_A 96 SDALAVAIYVVDIDAV-KIEKFNED-K-FDNYILILFN-GIHYDSLTMNEFKTV 145 (212)
T ss_dssp HHHHTCEEEEEETTTT-EEEEESTT-T-CSEEEEEEEC-SSCEEEEEETTTBCC
T ss_pred HHHHCCCEEEEECCCC-CeEEeCCC-C-CCCeEEEEEc-CCcceEEecCCCccc
Confidence 9999999999998632 34455443 2 6789999997 899999999555444
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=3.5e-30 Score=230.95 Aligned_cols=124 Identities=19% Similarity=0.354 Sum_probs=107.8
Q ss_pred cEEEEecCCCChHHHHHHHhHhcC-Ccc-----HHHHHHHHHHHHhcCcccccccccccHHHHHHhhcCCCCCCchHHHH
Q 020231 186 FVEHKVQGDGNCQFRALSDQLYHT-PEH-----HKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQ 259 (329)
Q Consensus 186 L~v~~V~GDGNCLFRALS~qL~g~-~~~-----H~~VR~~vV~yL~~n~d~f~~fv~~~~~eYl~~Msk~g~WGg~iELq 259 (329)
+.+.+|+|||||||||||+||+++ +.. |.+||+.|++||++|++. .+++++|++||++|+++++|||++||+
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~ 108 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence 788899999999999999999998 666 999999999999999999 456889999999999999999999999
Q ss_pred HHHHhhCCcEEEEEcCCCc---eEEEEcCCCCCCCCeEEEEecCCCcccccccCCCC
Q 020231 260 AAADLFHVKIVVITSFKDT---CYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDR 313 (329)
Q Consensus 260 AlA~~y~v~I~V~ss~~~~---~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~~d~ 313 (329)
|+|++|+++|+|++...+. ..+.+.+. ...++|+|+|++++|||+|++..+.
T Consensus 109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~ 163 (185)
T 3phx_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQF 163 (185)
T ss_dssp HHHHHHCCCEEEEEC--CCBCCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGG
T ss_pred HHHHHHCCcEEEEEecCCCCceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCC
Confidence 9999999999999876654 23445432 3478999999888999999998764
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.96 E-value=9.9e-30 Score=233.59 Aligned_cols=126 Identities=19% Similarity=0.343 Sum_probs=110.3
Q ss_pred cEEEEecCCCChHHHHHHHhHhcC-Ccc-----HHHHHHHHHHHHhcCcccccccccccHHHHHHhhcCCCCCCchHHHH
Q 020231 186 FVEHKVQGDGNCQFRALSDQLYHT-PEH-----HKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQ 259 (329)
Q Consensus 186 L~v~~V~GDGNCLFRALS~qL~g~-~~~-----H~~VR~~vV~yL~~n~d~f~~fv~~~~~eYl~~Msk~g~WGg~iELq 259 (329)
+.+.+|+|||||||||||+||+++ +.. |..||+.|++||++|++. .+++++|++||++|+++++|||++||+
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~ 108 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence 888999999999999999999998 566 999999999999999999 456889999999999999999999999
Q ss_pred HHHHhhCCcEEEEEcCCC--c-eEEEEcCCCCCCCCeEEEEecCCCcccccccCCCCCC
Q 020231 260 AAADLFHVKIVVITSFKD--T-CYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPL 315 (329)
Q Consensus 260 AlA~~y~v~I~V~ss~~~--~-~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~~d~~~ 315 (329)
|+|++|+++|+|++...+ . ..+.+.+. ...++|+|+|++++|||+|++..+...
T Consensus 109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~ 165 (219)
T 3phu_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET 165 (219)
T ss_dssp HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCC
Confidence 999999999999987765 2 23445443 347899999998899999999987543
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.86 E-value=1.3e-21 Score=180.92 Aligned_cols=96 Identities=11% Similarity=0.291 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCceEEE--EcCCC
Q 020231 213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIE--ILPNV 287 (329)
Q Consensus 213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~i~--i~P~~ 287 (329)
...+|..+..||++|++.|.+|+++ ++++||+ .+..+++||||++|+|||++++++|.|+..+++...+. ..|.
T Consensus 132 v~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~- 210 (234)
T 1tff_A 132 VQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE- 210 (234)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC-
T ss_pred HHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC-
Confidence 3568999999999999999999975 8999999 79999999999999999999999999999877542221 1232
Q ss_pred CCCCCeEEEEecCCCcccccccCC
Q 020231 288 EKIKRAICLSFWAEVHYNSIFSQD 311 (329)
Q Consensus 288 ~~~~~~I~Lsy~~g~HYdSV~~~~ 311 (329)
...+.|+|+|. ++|||+||+.+
T Consensus 211 -~~~~~I~LlY~-pgHYdily~~~ 232 (234)
T 1tff_A 211 -AATPSVYLLYK-TSHYNILYAAD 232 (234)
T ss_dssp -CSSCSEEEEEE-TTEEEEEEECC
T ss_pred -CCCCeEEEEEC-CCCceecccCC
Confidence 35678999996 46999999864
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.82 E-value=9.1e-20 Score=168.36 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCc---eEEEEcCC
Q 020231 213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDT---CYIEILPN 286 (329)
Q Consensus 213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~---~~i~i~P~ 286 (329)
...+|..++.||++|++.|.+|+++ ++++||. .+..+++||||++|+|||++|+++|.|+..++.. ......|.
T Consensus 135 v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~ 214 (234)
T 2zfy_A 135 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE 214 (234)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC
Confidence 3578999999999999999999975 8999998 6999999999999999999999999999987653 12223343
Q ss_pred CCCCCCeEEEEecCCCccccccc
Q 020231 287 VEKIKRAICLSFWAEVHYNSIFS 309 (329)
Q Consensus 287 ~~~~~~~I~Lsy~~g~HYdSV~~ 309 (329)
...+.|+|+|.. +|||+|||
T Consensus 215 --~~~p~I~LlY~p-gHYdiLy~ 234 (234)
T 2zfy_A 215 --GSEPKVYLLYRP-GHYDILYK 234 (234)
T ss_dssp --TCCCSEEEEEET-TEEEEEEC
T ss_pred --CCCCeEEEEECC-CCcccCCC
Confidence 246789999975 59999986
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.77 E-value=1.5e-18 Score=164.72 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCc----eEEE-Ec
Q 020231 213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDT----CYIE-IL 284 (329)
Q Consensus 213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~----~~i~-i~ 284 (329)
...||..+..||++|++.|.+|+.+ ++++||+ .|...++||||++|+|||++|+++|.|+..++.. .... +
T Consensus 170 v~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f- 248 (284)
T 4dhi_B 170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI- 248 (284)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-
T ss_pred HHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-
Confidence 4678999999999999999999964 8999999 8999999999999999999999999999876531 1122 3
Q ss_pred CCCCC-CCCeEEEEecCCCcccccccCCCCCCc
Q 020231 285 PNVEK-IKRAICLSFWAEVHYNSIFSQDDRPLG 316 (329)
Q Consensus 285 P~~~~-~~~~I~Lsy~~g~HYdSV~~~~d~~~~ 316 (329)
|.... ..+.|+|.| +++|||.||+....+-+
T Consensus 249 p~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~~ 280 (284)
T 4dhi_B 249 PSDDQQIAPEITLLY-RPGHYDVIYKKDSTEAS 280 (284)
T ss_dssp SCCCSCCCCSEEEEE-ETTEEEEEEECC-----
T ss_pred CCCCCCCCCEEEEee-cCCCccccccCCCCchh
Confidence 65432 346799987 67899999998865543
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.73 E-value=4.6e-18 Score=167.56 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCC-ceE--EEEcCC
Q 020231 213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKD-TCY--IEILPN 286 (329)
Q Consensus 213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~-~~~--i~i~P~ 286 (329)
...+|..+..||++|++.|.+|+++ ++++||. .|...++||||++|+|||++|+++|.|+..++. ... ....|.
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~ 379 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE 379 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence 4569999999999999999999975 7999999 899999999999999999999999999976652 111 123443
Q ss_pred CCCCCCeEEEEecCCCccccccc
Q 020231 287 VEKIKRAICLSFWAEVHYNSIFS 309 (329)
Q Consensus 287 ~~~~~~~I~Lsy~~g~HYdSV~~ 309 (329)
...+.|+|.| +.+|||.||+
T Consensus 380 --~~~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 380 --GSEPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp --TCCCCCEEEE-ETBEEEEEEC
T ss_pred --CCCCEEEEEE-cCCccccCCC
Confidence 3467899998 6789999986
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.59 E-value=3e-07 Score=89.70 Aligned_cols=127 Identities=20% Similarity=0.380 Sum_probs=88.7
Q ss_pred cEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCcc-cc-----------cccc-------c----ccHHHH
Q 020231 186 FVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPE-MY-----------EGYV-------P----MEYSEY 242 (329)
Q Consensus 186 L~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d-~f-----------~~fv-------~----~~~~eY 242 (329)
|....+.||||||.+|+|..++|-++....+|+.+.+-|++... .| ..|+ + .+|+.-
T Consensus 112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I 191 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL 191 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence 66778999999999999999999999999999999999887642 11 1222 1 245544
Q ss_pred HHhhcCCC------C---CCchHHHHHHHHhhCCcEEEEEcC--CC---c-eE--E----EEcC----CCCCCCCeEEEE
Q 020231 243 LKKMSMSG------E---WGDHVTLQAAADLFHVKIVVITSF--KD---T-CY--I----EILP----NVEKIKRAICLS 297 (329)
Q Consensus 243 l~~Msk~g------~---WGg~iELqAlA~~y~v~I~V~ss~--~~---~-~~--i----~i~P----~~~~~~~~I~Ls 297 (329)
+..-+... . ==-++-+.++|++++|||+|+... ++ . .+ + .|.| .....+.||.|+
T Consensus 192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg 271 (390)
T 3dkb_A 192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG 271 (390)
T ss_dssp HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence 44333221 1 123677899999999999999532 11 1 11 1 1333 334567899999
Q ss_pred ecCCCcccccccCCCC
Q 020231 298 FWAEVHYNSIFSQDDR 313 (329)
Q Consensus 298 y~~g~HYdSV~~~~d~ 313 (329)
|.+ +||.+|++.++.
T Consensus 272 Y~s-~HFsaLV~me~~ 286 (390)
T 3dkb_A 272 YDS-HHFVPLVTLKDS 286 (390)
T ss_dssp ECS-SCEEEEEEBCSS
T ss_pred ecc-CceeeeeecccC
Confidence 965 899999998754
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.49 E-value=5.7e-07 Score=89.01 Aligned_cols=128 Identities=13% Similarity=0.196 Sum_probs=93.4
Q ss_pred CcEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCccccc----------------ccc--cc----cHHHH
Q 020231 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYE----------------GYV--PM----EYSEY 242 (329)
Q Consensus 185 GL~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~----------------~fv--~~----~~~eY 242 (329)
.|......||||||.+|+|..++|.++....||+.+.+-|++....|. .|. ++ +|+.-
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i 267 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI 267 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence 366678999999999999999999999999999999998887533221 232 22 44455
Q ss_pred HHhhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCceE-------E----EEcCC----CCCCCCeEEEEecCCCccccc
Q 020231 243 LKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCY-------I----EILPN----VEKIKRAICLSFWAEVHYNSI 307 (329)
Q Consensus 243 l~~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~-------i----~i~P~----~~~~~~~I~Lsy~~g~HYdSV 307 (329)
+..-+.+|.=--++-+.++|+++++||+|+...--..+ + .|.|- ......||.|+|.+ .||.+|
T Consensus 268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHFsaL 346 (454)
T 3zrh_A 268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSAL 346 (454)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEEEEE
T ss_pred HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cceeee
Confidence 55556677666778899999999999999974221000 1 13342 23457899999975 799999
Q ss_pred ccCCCC
Q 020231 308 FSQDDR 313 (329)
Q Consensus 308 ~~~~d~ 313 (329)
++.+..
T Consensus 347 V~~~~~ 352 (454)
T 3zrh_A 347 VAMEND 352 (454)
T ss_dssp EEBCCC
T ss_pred eecccc
Confidence 998764
No 11
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=27.12 E-value=11 Score=31.50 Aligned_cols=19 Identities=16% Similarity=-0.211 Sum_probs=14.0
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 020231 176 RLLNRLQLYGFVEHKVQGD 194 (329)
Q Consensus 176 rL~~~L~~~GL~v~~V~GD 194 (329)
...++|+..|..+.-+.|-
T Consensus 31 ~al~~l~~~G~~iii~TgR 49 (142)
T 2obb_A 31 ETLKLLQQEKHRLILWSVR 49 (142)
T ss_dssp HHHHHHHHTTCEEEECCSC
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 4456788899988777664
Done!