BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020233
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 167/324 (51%), Gaps = 32/324 (9%)
Query: 4 VKALAESPGLTSIPSTYNFTQNQHDHEAVSEIDPEDS------IPVIDFSLLTSSSPDQR 57
V++LA+S G+ SIP Y + + + E+++++ E+ +P ID + S R
Sbjct: 6 VESLAKS-GIISIPKEY--IRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62
Query: 58 SKVIQDLGKACRDWGFFTVINHNVPEKLMEMTMDACQRFFNLTEEEKREFAGKHVLDPIR 117
I++L KA DWG +INH +P LME A + FF+L+ EEK ++A I+
Sbjct: 63 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122
Query: 118 -CGTSFNASVEKVFFWRDFLKVFVHPEFHS-----PNKPVGFSEISLEYCKRIRQVAREL 171
G+ + W D+ +PE P P + E + EY K +R +A ++
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182
Query: 172 LKGISESLGLEFCYIERAM-NLDSGLQILVANLYPPCPQPELAMGMPPHSDHGLLTLLTQ 230
K +S LGLE +E+ + L+ L + N YP CPQPELA+G+ H+D LT +
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 242
Query: 231 NGICGLQLLHNGKWV---------------NVNILSNGKYKSVVHRAVVNNKMTRVSLAI 275
N + GLQL + GKWV + ILSNGKYKS++HR +VN + R+S A+
Sbjct: 243 NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 302
Query: 276 ANGPSLDTVV-EPSKELIERQSEA 298
P D +V +P E++ +S A
Sbjct: 303 FCEPPKDKIVLKPLPEMVSVESPA 326
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 167/324 (51%), Gaps = 32/324 (9%)
Query: 4 VKALAESPGLTSIPSTYNFTQNQHDHEAVSEIDPEDS------IPVIDFSLLTSSSPDQR 57
V++LA+S G+ SIP Y + + + E+++++ E+ +P ID + S R
Sbjct: 7 VESLAKS-GIISIPKEY--IRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 58 SKVIQDLGKACRDWGFFTVINHNVPEKLMEMTMDACQRFFNLTEEEKREFAGKHVLDPIR 117
I++L KA DWG +INH +P LME A + FF+L+ EEK ++A I+
Sbjct: 64 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 118 -CGTSFNASVEKVFFWRDFLKVFVHPEFHS-----PNKPVGFSEISLEYCKRIRQVAREL 171
G+ + W D+ +PE P P + E + EY K +R +A ++
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 172 LKGISESLGLEFCYIERAM-NLDSGLQILVANLYPPCPQPELAMGMPPHSDHGLLTLLTQ 230
K +S LGLE +E+ + L+ L + N YP CPQPELA+G+ H+D LT +
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 231 NGICGLQLLHNGKWV---------------NVNILSNGKYKSVVHRAVVNNKMTRVSLAI 275
N + GLQL + GKWV + ILSNGKYKS++HR +VN + R+S A+
Sbjct: 244 NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 303
Query: 276 ANGPSLDTVV-EPSKELIERQSEA 298
P D +V +P E++ +S A
Sbjct: 304 FCEPPKDKIVLKPLPEMVSVESPA 327
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 166/327 (50%), Gaps = 38/327 (11%)
Query: 4 VKALAESPGLTSIPSTYNFTQNQHDHEAVSEIDPEDS------IPVIDFSLLTSSSPDQR 57
V++LA+S G+ SIP Y + + + E+++++ E+ +P ID + S R
Sbjct: 7 VESLAKS-GIISIPKEY--IRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 58 SKVIQDLGKACRDWGFFTVINHNVPEKLMEMTMDACQRFFNLTEEEKREFAGKHVLDPIR 117
I++L KA DWG +INH +P L E A + FF+L+ EEK ++A I+
Sbjct: 64 ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 118 C-GTSFNASVEKVFFWRDFLKVFVHPEFHS-----PNKPVGFSEISLEYCKRIRQVAREL 171
G+ + W D+ +PE P P + E + EY K +R +A ++
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 172 LKGISESLGLEFCYIERAMNLDSGLQILV----ANLYPPCPQPELAMGMPPHSDHGLLTL 227
K +S LGLE +E+ + GL+ L+ N YP CPQPELA+G+ H+D LT
Sbjct: 184 FKALSVGLGLEPDRLEKEVG---GLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 228 LTQNGICGLQLLHNGKWV---------------NVNILSNGKYKSVVHRAVVNNKMTRVS 272
+ N + GLQL + GKWV + ILSNGKYKS++HR +VN + R+S
Sbjct: 241 ILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 273 LAIANGPSLDTVV-EPSKELIERQSEA 298
A+ P D +V +P E + +S A
Sbjct: 301 WAVFCEPPKDKIVLKPLPEXVSVESPA 327
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 24/261 (9%)
Query: 56 QRSKVIQDLGKACRDWGFFTVINHNVPEKLMEMTMDACQRFFNLTEEEK-REFAGKHVLD 114
+R+ + + AC +WGFF ++NH +P ++ + + + E++ +E L+
Sbjct: 16 ERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALE 75
Query: 115 PIRCGTSFNASVEKVFFWRDFLKVFVHPEFHSPNKPVGFSEISLEYCKRIRQVARELLKG 174
++ + + E FF + + P+ + E+ ++ KR+ ++A ELL
Sbjct: 76 GVQAEVT-DXDWESTFFLKHLPISNIS---EVPDLDEEYREVXRDFAKRLEKLAEELLDL 131
Query: 175 ISESLGLEFCYIERAMNLDSG--LQILVANLYPPCPQPELAMGMPPHSDHGLLTLLTQNG 232
+ E+LGLE Y++ A G V+N YPPCP+P+L G+ H+D G + LL Q+
Sbjct: 132 LCENLGLEKGYLKNAFYGSKGPNFGTKVSN-YPPCPKPDLIKGLRAHTDAGGIILLFQDD 190
Query: 233 -ICGLQLLHNGKWVNV---------------NILSNGKYKSVVHRAVVNNKMTRVSLAIA 276
+ GLQLL +G+W++V +++NGKYKSV HR + R SLA
Sbjct: 191 KVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASF 250
Query: 277 NGPSLDTVVEPSKELIERQSE 297
P D V+ P+ L+E+++E
Sbjct: 251 YNPGSDAVIYPAPALVEKEAE 271
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 47/292 (16%)
Query: 40 SIPVIDFSLLTSSSPDQRSKVIQDLGKACRDWGFFTVINHNVPEKLMEMTMDACQRFFNL 99
++P ID S L + +V Q + A RD GFF +NH + + ++ + ++
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI--NVQRLSQKTKEFHMSI 65
Query: 100 TEEEKREFA----GKHVLDPIRCGTSFNASVEKVF---------FWRDFLKVFVHPEFHS 146
T EEK + A K D +R G + +K F D ++ H
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 147 PN------KPVGFSEISLEYCKRIRQVARELLKGISESLGLEFCYIERAMNLDSGLQILV 200
N K GF + + +Y + ++ LLKG + +LG E + R D L +V
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 201 ANLYPPC-PQPELAMGMPP---------HSDHGLLTLLTQNGICGLQLLHNGKWVNVNI- 249
YP P PE A+ H D L+T+L Q+ + LQ+ + ++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEAD 245
Query: 250 --------------LSNGKYKSVVHRAVVNNKMTRVSLAIANGPSLDTVVEP 287
L+N YK+ +HR N R SL D+V++P
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHRVKWVN-AERQSLPFFVNLGYDSVIDP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 47/292 (16%)
Query: 40 SIPVIDFSLLTSSSPDQRSKVIQDLGKACRDWGFFTVINHNVPEKLMEMTMDACQRFFNL 99
++P ID S L + +V Q + A RD GFF +NH + + ++ + ++
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI--NVQRLSQKTKEFHMSI 65
Query: 100 TEEEKREFA----GKHVLDPIRCGTSFNASVEKVF---------FWRDFLKVFVHPEFHS 146
T EEK + A K D +R G + +K F D ++ H
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 147 PN------KPVGFSEISLEYCKRIRQVARELLKGISESLGLEFCYIERAMNLDSGLQILV 200
N K GF + + +Y + ++ LLKG + +LG E + R D L +V
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 201 ANLYPPC-PQPELAMGMPP---------HSDHGLLTLLTQNGICGLQLLHNGKWVNVNI- 249
YP P PE A+ H D L+T+L Q+ + LQ+ + ++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEAD 245
Query: 250 --------------LSNGKYKSVVHRAVVNNKMTRVSLAIANGPSLDTVVEP 287
L+N YK+ +HR N R SL D+V++P
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHRVKWVN-AERQSLPFFVNLGYDSVIDP 296
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 46/264 (17%)
Query: 31 AVSEIDPEDSIPVIDFSLLTSSSPDQRSKVIQDLGKACRDWGFFTVINHNVPEKLMEMTM 90
+ S IDP + FSL ++ Q+LG + +GF + ++++ + ++ +
Sbjct: 3 STSAIDP------VSFSLYAKDF----TRFAQELGASFERYGFAVLSDYDLDQARIDAAV 52
Query: 91 DACQRFFNLTEEEKREFAGKHVLDPIRCGTSFNASVEKVFFWRDFLKVFVH-----PEFH 145
D+ + FF L E K+++AG V R F K D LK F H P H
Sbjct: 53 DSAKAFFALPVETKKQYAG--VKGGARGYIPFGVETAKGADHYD-LKEFWHXGRDLPPGH 109
Query: 146 S----------PNKPVGFSEISLEYCKRIRQVARELLKGISESLGLEFCYIERAMNLDSG 195
P + F + ++L+ I+ L LE + + + G
Sbjct: 110 RFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQ--DG 167
Query: 196 LQILVANLYPPCPQPELAMGMPPHSDHGLLTLLTQNGICGLQLL-HNGKWVNVNI----- 249
+L YPP P+ + H D +TLL GL++L +G+W+ +N
Sbjct: 168 NSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCL 227
Query: 250 ----------LSNGKYKSVVHRAV 263
L+N S VHR V
Sbjct: 228 VINIGDXLERLTNNVLPSTVHRVV 251
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 41/241 (17%)
Query: 66 KACRDWGFFTVINHNVPEKLMEMTMDACQRFFNLTEEEKREFA-GKHVLDPIRCGTSFNA 124
++ R+ GF + NH + ++L+E Q FFN E K EF + D F A
Sbjct: 20 ESLRETGFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRETHDGF-----FPA 72
Query: 125 SVE---KVFFWRDFLKVF-VHPEFHSPNKPVGFSEISLEYCKRIRQVARELLKGIS---- 176
S+ K +D + + V+P P+ L Y ++ +A ELL+ I
Sbjct: 73 SISETAKGHTVKDIKEYYHVYPWGRIPD---SLRANILAYYEKANTLASELLEWIETYSP 129
Query: 177 ESLGLEFCYIERAMNLDSGLQILVANLYPPCPQPEL--AMGMPPHSDHGLLTLLTQNGIC 234
+ + +F +S +L YPP E A+ H D L+T+L
Sbjct: 130 DEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEP 189
Query: 235 GLQL-LHNGKWVNV-----NIL----------SNGKYKSVVHRAV----VNNKMTRVSLA 274
GLQ+ +G W++V NI+ S+G + S HR + + +R+SL
Sbjct: 190 GLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLP 249
Query: 275 I 275
+
Sbjct: 250 L 250
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 91 DACQRFFNLTEEEKREFAGKHVLDPIRCGTSFNASVEK---VF-FWRDFLKVF-VHPEFH 145
DA + + +L + R A KH+ P SF A++ VF F FL V + PE+H
Sbjct: 213 DAIKMWLDLGVDGIRVDAVKHM--PFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYH 270
Query: 146 SPNKPVGFSEISLEYCKRIRQVARE 170
G S + L + ++ RQV R+
Sbjct: 271 QFANESGMSLLDLRFAQKARQVFRD 295
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 221 DHGLLTLLTQNGICGLQLLHNGKWVNVNILSNGKYKSVVHRAVVNNKMTRVSLAIANGPS 280
DH ++ L +CG++ LH+ ++ ++ K ++V ++ K+ LA G S
Sbjct: 124 DHERMSYLLYQMLCGIKHLHSAGIIHRDL----KPSNIVVKSDCTLKILDFGLARTAGTS 179
Query: 281 LDTVVEPSKELIERQSEAPAYI-GIKYKDFLEL 312
++EP E++ R AP I G+ YK+ ++L
Sbjct: 180 F--MMEP--EVVTRYYRAPEVILGMGYKENVDL 208
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 221 DHGLLTLLTQNGICGLQLLHNGKWVNVNILSNGKYKSVVHRAVVNNKMTRVSLAIANGPS 280
DH ++ L +CG++ LH+ ++ ++ K ++V ++ K+ LA G S
Sbjct: 124 DHERMSYLLYQMLCGIKHLHSAGIIHRDL----KPSNIVVKSDCTLKILDFGLARTAGTS 179
Query: 281 LDTVVEPSKELIERQSEAPAYI-GIKYKDFLEL 312
++EP E++ R AP I G+ YK+ +++
Sbjct: 180 F--MMEP--EVVTRYYRAPEVILGMGYKENVDI 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,616,788
Number of Sequences: 62578
Number of extensions: 380865
Number of successful extensions: 996
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 57
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)