BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020234
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 208/327 (63%), Gaps = 7/327 (2%)
Query: 1 MGGCKGPITTFIVEPFVPHNQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFL 58
+G G + F++EPFVPH+Q E+Y+ I + R G + F GG+++ + K + + +
Sbjct: 95 VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLV 154
Query: 59 PTEKHMT-LDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYP 117
++ + D L+ P + + + FI G+F ++DL F+++E+NP + Y
Sbjct: 155 GVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV 214
Query: 118 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 177
LD+ ++D TA + KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGR
Sbjct: 215 LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGR 274
Query: 178 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PD 235
IWTMVAGGGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T + PD
Sbjct: 275 IWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPD 334
Query: 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 295
G + L+IGG IANFT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL M
Sbjct: 335 G--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMG 392
Query: 296 ALGEELGIPLEVYGPEATMTGICKQAI 322
+G+ GIP+ V+G E MT I A+
Sbjct: 393 EVGKTTGIPIHVFGTETHMTAIVGMAL 419
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 208/327 (63%), Gaps = 7/327 (2%)
Query: 1 MGGCKGPITTFIVEPFVPHNQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFL 58
+G G + F++EPFVPH+Q E+Y+ I + R G + F GG+++ + K + + +
Sbjct: 95 VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLV 154
Query: 59 PTEKHMT-LDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYP 117
++ + D L+ P + + + FI G+F ++DL F+++E+NP + Y
Sbjct: 155 GVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV 214
Query: 118 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 177
LD+ ++D TA + KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGR
Sbjct: 215 LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGR 274
Query: 178 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PD 235
IWTMVAGGGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T + PD
Sbjct: 275 IWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPD 334
Query: 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 295
G + L+IGG IANFT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL M
Sbjct: 335 G--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMG 392
Query: 296 ALGEELGIPLEVYGPEATMTGICKQAI 322
+G+ GIP+ V+G E MT I A+
Sbjct: 393 EVGKTTGIPIHVFGTETHMTAIVGMAL 419
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 205/327 (62%), Gaps = 7/327 (2%)
Query: 1 MGGCKGPITTFIVEPFVPHNQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFL 58
+G G + F++EPFVPH+Q E+Y+ I + R G + F GG+++ + K + + +
Sbjct: 95 VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLV 154
Query: 59 PTEKHMT-LDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYP 117
++ + D L+ P + + + FI G+F ++DL F+++E+NP + Y
Sbjct: 155 GVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV 214
Query: 118 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 177
LD+ ++D TA + KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGR
Sbjct: 215 LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGR 274
Query: 178 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PD 235
IWT VAGGGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T + PD
Sbjct: 275 IWTXVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLXTREKHPD 334
Query: 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 295
G+ L+IGG IANFT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL
Sbjct: 335 GK--ILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVXG 392
Query: 296 ALGEELGIPLEVYGPEATMTGICKQAI 322
+G+ GIP+ V+G E T I A+
Sbjct: 393 EVGKTTGIPIHVFGTETHXTAIVGXAL 419
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 49/278 (17%)
Query: 7 PITTFIVEPFVPHNQEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHM 64
P+ +VE +E YL V DR + F S GG+EIE+ ++ + +
Sbjct: 92 PVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKV 147
Query: 65 TLDACAPLIATLPLEFR---------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV 111
LD PL +P + R GK+ MG+ +F + D + IE+NP +
Sbjct: 148 ALD---PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVIT 204
Query: 112 -NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT 170
G+ LD + D A F+ P R + E +A +
Sbjct: 205 KQGDLICLDGKLGADGNALFRQ-----------PDLREMRDQSQ--EDPREAQAAQWELN 251
Query: 171 VLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCA 230
+ G I MV G G ++ D V G E N+ + G +E V + ++++
Sbjct: 252 YVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKIILS-- 307
Query: 231 TADPDGRKRALLIG--GGIANFTDVATTFNGIIRALRE 266
D + +A+L+ GGI +A +GII A+ E
Sbjct: 308 ----DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVAE 338
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 49/278 (17%)
Query: 7 PITTFIVEPFVPHNQEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHM 64
P+ +VE +E YL V DR + F S GG+EIE+ ++ + +
Sbjct: 92 PVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKV 147
Query: 65 TLDACAPLIATLPLEFR---------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV 111
LD PL +P + R GK+ MG+ +F + D + IE+NP +
Sbjct: 148 ALD---PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVIT 204
Query: 112 -NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT 170
G+ LD + D A F+ P R + E +A +
Sbjct: 205 KQGDLICLDGKLGADGNALFRQ-----------PDLREMRDQSQ--EDPREAQAAQWELN 251
Query: 171 VLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCA 230
+ G I MV G G ++ D V G E N+ + G +E V + ++++
Sbjct: 252 YVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKIILS-- 307
Query: 231 TADPDGRKRALLIG--GGIANFTDVATTFNGIIRALRE 266
D + +A+L+ GGI +A +GII A+ E
Sbjct: 308 ----DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVAE 338
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 49/278 (17%)
Query: 7 PITTFIVEPFVPHNQEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHM 64
P+ +VE +E YL V DR + F S GG+EIE+ ++ + +
Sbjct: 92 PVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKV 147
Query: 65 TLDACAPLIATLPLEFR---------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV 111
LD PL +P + R GK+ MG+ +F + D + I +NP +
Sbjct: 148 ALD---PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIAINPLVIT 204
Query: 112 -NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT 170
G+ LD + D A F+ P R + E +A +
Sbjct: 205 KQGDLICLDGKLGADGNALFRQ-----------PDLREMRDQSQ--EDPREAQAAQWELN 251
Query: 171 VLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCA 230
+ G I MV G G ++ D V G E N+ + G +E V + ++++
Sbjct: 252 YVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKIILS-- 307
Query: 231 TADPDGRKRALLIG--GGIANFTDVATTFNGIIRALRE 266
D + +A+L+ GGI +A +GII A+ E
Sbjct: 308 ----DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVAE 338
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 114/281 (40%), Gaps = 47/281 (16%)
Query: 8 ITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKV 53
+ +V + ++E YL+I+ DR G + S GG++IEE D +
Sbjct: 101 VNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDII 160
Query: 54 KTIFLPTEKHM--TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV 111
+ I + M L PL + + D I ++ +F +D + +E+NPF
Sbjct: 161 EGIKDSQAQRMAENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGET 212
Query: 112 -NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT 170
G+ D + DD A F+ +A + S I +E LK+
Sbjct: 213 PEGQVVCFDAKINFDDNAEFRQKDIFAMDD---------KSENEPIE--NEAAKYDLKYI 261
Query: 171 VLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCA 230
L+ G I V G G ++ D + + N+ + G E +V Q +++
Sbjct: 262 GLD--GNIACFVNGAGLAMATCDII--FLNGGKPANFLDLGGGVKESQVYQAFKLL---- 313
Query: 231 TADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 271
TADP + I GGI N +A NGI +A RE E K+
Sbjct: 314 TADPKVEAILVNIFGGIVNXAIIA---NGITKACRELELKV 351
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 114/281 (40%), Gaps = 47/281 (16%)
Query: 8 ITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKV 53
+ +V + ++E YL+I+ DR G + S GG++IEE D +
Sbjct: 101 VNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDII 160
Query: 54 KTIFLPTEKHM--TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV 111
+ I + M L PL + + D I ++ +F +D + +E+NPF
Sbjct: 161 EGIKDSQAQRMAENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGET 212
Query: 112 -NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT 170
G+ D + DD A F+ +A + S I +E LK+
Sbjct: 213 PEGQVVCFDAKINFDDNAEFRQKDIFAMDD---------KSENEPIE--NEAAKYDLKYI 261
Query: 171 VLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCA 230
L+ G I V G G ++ D + + N+ + G E +V Q +++
Sbjct: 262 GLD--GNIACFVNGAGLAMATCDII--FLNGGKPANFLDLGGGVKESQVYQAFKLL---- 313
Query: 231 TADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 271
TADP + I GGI N +A NGI +A RE E K+
Sbjct: 314 TADPKVEAILVNIFGGIVNXAIIA---NGITKAXRELELKV 351
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 114/281 (40%), Gaps = 47/281 (16%)
Query: 8 ITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKV 53
+ +V + ++E YL+I+ DR G + S GG++IEE D +
Sbjct: 100 VNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDII 159
Query: 54 KTIFLPTEKHM--TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV 111
+ I + M L PL + + D I ++ +F +D + +E+NPF
Sbjct: 160 EGIKDSQAQRMAENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGET 211
Query: 112 -NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT 170
G+ D + DD A F+ +A + S I +E LK+
Sbjct: 212 PEGQVVCFDAKINFDDNAEFRQKDIFAMDD---------KSENEPIE--NEAAKYDLKYI 260
Query: 171 VLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCA 230
L+ G I V G G ++ D + + N+ + G E +V Q +++
Sbjct: 261 GLD--GNIACFVNGAGLAMATCDII--FLNGGKPANFLDLGGGVKESQVYQAFKLL---- 312
Query: 231 TADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 271
TADP + I GGI N +A NGI +A RE E K+
Sbjct: 313 TADPKVEAILVNIFGGIVNCAIIA---NGITKACRELELKV 350
>pdb|2V8A|B Chain B, The Structure Of Thermosynechococcus Elongatus
Allophycocyanin At 3.5 Angstroems.
pdb|3DBJ|B Chain B, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|D Chain D, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|F Chain F, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|H Chain H, Allophycocyanin From Thermosynechococcus Vulcanus
Length = 161
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 119 DMRGELDDTAAFKNFKKW-ANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT-VLNPKG 176
D++G+ DTAA + K + A E + V+S+ + I + E + SL ++ + P G
Sbjct: 13 DVQGKYLDTAAMEKLKAYFATGELRVRAASVISANAANI--VKEAVAKSLLYSDITRPGG 70
Query: 177 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN--EEEVLQ 221
++T + YA + DL Y YA +G P+ +E VL
Sbjct: 71 XMYT-------TRRYAACIRDLDYYLRYATYAMLAGDPSILDERVLN 110
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 215 NEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248
NE+ L+Y V+ID P KR L++G GIA
Sbjct: 22 NEDLKLRYLDVLIDNGLNPPGPPKRILIVGAGIA 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,163,946
Number of Sequences: 62578
Number of extensions: 433788
Number of successful extensions: 1030
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 13
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)