Query 020234
Match_columns 329
No_of_seqs 166 out of 1254
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 8.4E-82 2.9E-86 623.3 23.2 318 4-323 98-420 (425)
2 3pff_A ATP-citrate synthase; p 100.0 5.1E-79 1.7E-83 641.5 24.6 318 4-324 98-421 (829)
3 2fp4_B Succinyl-COA ligase [GD 100.0 2.5E-70 8.4E-75 538.2 32.0 287 7-327 99-394 (395)
4 2nu8_B SCS-beta, succinyl-COA 100.0 3.8E-70 1.3E-74 535.9 30.9 288 6-327 91-387 (388)
5 3ufx_B Succinyl-COA synthetase 100.0 4.2E-67 1.4E-71 515.6 22.8 285 7-328 84-377 (397)
6 2csu_A 457AA long hypothetical 99.9 3.5E-22 1.2E-26 199.5 13.5 157 127-326 262-446 (457)
7 1wr2_A Hypothetical protein PH 99.7 1.4E-17 4.9E-22 151.9 12.2 115 7-127 106-237 (238)
8 3dmy_A Protein FDRA; predicted 99.3 4.8E-12 1.7E-16 126.7 10.4 128 175-327 249-414 (480)
9 3mwd_B ATP-citrate synthase; A 97.5 0.00062 2.1E-08 65.0 10.8 94 175-288 168-264 (334)
10 2fp4_A Succinyl-COA ligase [GD 97.2 0.00095 3.2E-08 62.9 8.5 96 175-286 152-249 (305)
11 3dmy_A Protein FDRA; predicted 97.1 0.002 6.7E-08 64.4 10.1 120 175-326 112-236 (480)
12 1oi7_A Succinyl-COA synthetase 97.0 0.0033 1.1E-07 58.6 10.7 125 175-324 144-286 (288)
13 2yv2_A Succinyl-COA synthetase 97.0 0.0025 8.5E-08 59.7 9.0 94 175-287 151-246 (297)
14 2yv1_A Succinyl-COA ligase [AD 96.9 0.0029 1E-07 59.1 8.6 92 175-287 150-243 (294)
15 2nu8_A Succinyl-COA ligase [AD 96.6 0.0057 2E-07 56.9 8.6 120 175-323 144-285 (288)
16 3pff_A ATP-citrate synthase; p 96.2 0.022 7.4E-07 60.4 11.2 96 174-288 653-750 (829)
17 2csu_A 457AA long hypothetical 95.8 0.045 1.6E-06 54.1 10.6 93 176-288 150-242 (457)
18 2yxb_A Coenzyme B12-dependent 86.8 4.2 0.00014 34.0 9.6 112 186-327 34-145 (161)
19 3e5n_A D-alanine-D-alanine lig 83.2 2.9 9.8E-05 39.9 7.8 26 9-35 235-260 (386)
20 4e4t_A Phosphoribosylaminoimid 78.9 2.5 8.4E-05 40.8 5.7 31 9-39 207-237 (419)
21 2ehh_A DHDPS, dihydrodipicolin 77.5 22 0.00076 32.4 11.5 107 206-327 11-124 (294)
22 2yxg_A DHDPS, dihydrodipicolin 76.1 17 0.0006 33.0 10.3 107 206-327 11-124 (289)
23 1ccw_A Protein (glutamate muta 75.6 30 0.001 27.8 11.1 110 186-325 19-134 (137)
24 3ouz_A Biotin carboxylase; str 74.7 3.4 0.00012 39.8 5.3 31 9-39 199-229 (446)
25 3l21_A DHDPS, dihydrodipicolin 72.3 27 0.00091 32.1 10.6 109 205-327 24-139 (304)
26 3flu_A DHDPS, dihydrodipicolin 72.1 31 0.0011 31.5 11.0 108 206-327 17-131 (297)
27 1o5k_A DHDPS, dihydrodipicolin 70.9 23 0.0008 32.5 9.9 108 205-327 22-136 (306)
28 3rst_A Signal peptide peptidas 70.7 8.3 0.00028 34.3 6.5 66 213-291 28-95 (240)
29 3qfe_A Putative dihydrodipicol 69.2 35 0.0012 31.6 10.8 111 206-327 20-137 (318)
30 3tak_A DHDPS, dihydrodipicolin 68.6 29 0.00099 31.6 9.9 108 206-327 11-125 (291)
31 3fkr_A L-2-keto-3-deoxyarabona 67.8 47 0.0016 30.5 11.3 109 206-327 18-135 (309)
32 1xky_A Dihydrodipicolinate syn 67.4 44 0.0015 30.6 11.0 108 206-327 22-136 (301)
33 3cpr_A Dihydrodipicolinate syn 67.1 49 0.0017 30.2 11.3 110 206-327 26-140 (304)
34 3qze_A DHDPS, dihydrodipicolin 67.0 34 0.0012 31.6 10.2 109 205-327 32-147 (314)
35 4dpp_A DHDPS 2, dihydrodipicol 66.5 34 0.0012 32.5 10.1 108 205-326 68-182 (360)
36 3si9_A DHDPS, dihydrodipicolin 66.4 32 0.0011 31.8 9.9 108 206-327 32-146 (315)
37 3jrx_A Acetyl-COA carboxylase 66.3 20 0.00067 36.4 8.9 30 9-38 283-312 (587)
38 3k5i_A Phosphoribosyl-aminoimi 66.2 4.5 0.00015 38.6 4.0 25 9-33 196-220 (403)
39 1f6k_A N-acetylneuraminate lya 66.0 52 0.0018 29.8 11.2 109 206-327 13-128 (293)
40 3glk_A Acetyl-COA carboxylase 65.7 17 0.00057 36.4 8.2 30 9-38 267-296 (540)
41 3tqt_A D-alanine--D-alanine li 65.6 21 0.00071 33.7 8.5 23 9-32 217-239 (372)
42 4eg0_A D-alanine--D-alanine li 65.6 29 0.00098 31.4 9.3 31 9-39 183-213 (317)
43 3na8_A Putative dihydrodipicol 64.9 36 0.0012 31.4 9.9 109 205-327 33-148 (315)
44 3s5o_A 4-hydroxy-2-oxoglutarat 64.1 36 0.0012 31.2 9.7 112 205-327 23-140 (307)
45 3h5d_A DHDPS, dihydrodipicolin 63.9 29 0.001 32.0 9.0 109 205-327 16-132 (311)
46 2wkj_A N-acetylneuraminate lya 63.4 51 0.0017 30.2 10.5 108 206-327 21-135 (303)
47 2ojp_A DHDPS, dihydrodipicolin 62.9 49 0.0017 30.0 10.3 107 207-327 12-125 (292)
48 2r8w_A AGR_C_1641P; APC7498, d 61.8 49 0.0017 30.8 10.2 109 205-327 43-158 (332)
49 2lnd_A De novo designed protei 61.5 24 0.00082 26.6 6.3 52 274-327 50-101 (112)
50 3m5v_A DHDPS, dihydrodipicolin 60.2 47 0.0016 30.3 9.7 103 211-327 22-132 (301)
51 2v9d_A YAGE; dihydrodipicolini 60.0 53 0.0018 30.7 10.2 108 206-327 41-155 (343)
52 3dz1_A Dihydrodipicolinate syn 59.0 54 0.0019 30.1 9.9 109 206-327 18-130 (313)
53 3b4u_A Dihydrodipicolinate syn 59.0 65 0.0022 29.3 10.4 108 206-327 13-128 (294)
54 3q2o_A Phosphoribosylaminoimid 58.9 25 0.00085 32.9 7.7 29 9-37 183-211 (389)
55 3gv0_A Transcriptional regulat 57.5 94 0.0032 26.9 11.0 118 176-325 128-254 (288)
56 3g85_A Transcriptional regulat 57.1 86 0.0029 27.0 10.6 120 176-325 128-256 (289)
57 3h75_A Periplasmic sugar-bindi 56.8 1.1E+02 0.0037 27.4 12.5 119 176-325 146-273 (350)
58 2kln_A Probable sulphate-trans 56.3 52 0.0018 25.5 8.2 87 215-321 29-121 (130)
59 1ehi_A LMDDL2, D-alanine:D-lac 55.6 38 0.0013 31.7 8.4 24 9-32 211-234 (377)
60 3u9t_A MCC alpha, methylcroton 55.6 27 0.00093 35.8 7.9 31 9-39 221-251 (675)
61 1ulz_A Pyruvate carboxylase N- 55.4 21 0.00072 34.0 6.6 30 9-38 194-223 (451)
62 3daq_A DHDPS, dihydrodipicolin 52.4 79 0.0027 28.6 9.8 106 207-327 14-126 (292)
63 3eb2_A Putative dihydrodipicol 52.3 26 0.00087 32.2 6.4 108 206-327 14-128 (300)
64 3n6r_A Propionyl-COA carboxyla 52.2 10 0.00034 39.1 4.0 31 9-39 195-225 (681)
65 3a5f_A Dihydrodipicolinate syn 52.2 57 0.0019 29.6 8.8 108 207-327 13-125 (291)
66 3e96_A Dihydrodipicolinate syn 51.7 73 0.0025 29.2 9.5 108 205-327 20-135 (316)
67 2xij_A Methylmalonyl-COA mutas 51.5 45 0.0015 34.9 8.7 95 206-326 634-730 (762)
68 3dbi_A Sugar-binding transcrip 50.9 59 0.002 29.0 8.7 118 176-325 182-308 (338)
69 1tjy_A Sugar transport protein 50.2 96 0.0033 27.5 9.9 86 212-325 169-255 (316)
70 2cby_A ATP-dependent CLP prote 50.1 30 0.001 29.9 6.2 66 208-290 30-100 (208)
71 3d0c_A Dihydrodipicolinate syn 49.8 74 0.0025 29.2 9.2 108 205-327 20-135 (314)
72 3zxn_A RSBS, anti-sigma-factor 49.7 86 0.003 24.4 8.5 103 208-326 16-119 (123)
73 2vc6_A MOSA, dihydrodipicolina 49.3 58 0.002 29.5 8.3 105 211-327 15-124 (292)
74 2w70_A Biotin carboxylase; lig 48.9 32 0.0011 32.7 6.8 29 9-37 196-224 (449)
75 3bf0_A Protease 4; bacterial, 48.8 16 0.00053 37.0 4.7 65 212-290 320-386 (593)
76 2dzd_A Pyruvate carboxylase; b 48.5 27 0.00093 33.4 6.2 28 9-36 200-227 (461)
77 2vpq_A Acetyl-COA carboxylase; 48.4 26 0.00088 33.4 6.0 30 9-38 194-223 (451)
78 2rfg_A Dihydrodipicolinate syn 48.2 61 0.0021 29.5 8.3 105 211-327 15-124 (297)
79 1yg6_A ATP-dependent CLP prote 48.1 26 0.00089 29.9 5.4 58 216-290 40-99 (193)
80 3qk7_A Transcriptional regulat 47.9 71 0.0024 27.8 8.6 91 176-286 127-226 (294)
81 3gyb_A Transcriptional regulat 46.5 1.4E+02 0.0047 25.5 11.8 117 176-325 119-242 (280)
82 3d8u_A PURR transcriptional re 45.8 1.4E+02 0.0047 25.3 12.5 118 176-325 121-247 (275)
83 2r91_A 2-keto-3-deoxy-(6-phosp 45.6 1.3E+02 0.0043 27.1 10.0 104 206-327 9-120 (286)
84 3h5t_A Transcriptional regulat 45.2 1.5E+02 0.0052 26.6 10.6 101 191-325 228-332 (366)
85 1a9x_A Carbamoyl phosphate syn 44.8 56 0.0019 35.3 8.5 31 8-38 201-231 (1073)
86 3k4h_A Putative transcriptiona 44.5 1.5E+02 0.0051 25.3 12.3 118 176-325 132-258 (292)
87 3uug_A Multiple sugar-binding 43.9 78 0.0027 27.9 8.2 94 212-325 181-275 (330)
88 3i12_A D-alanine-D-alanine lig 43.3 74 0.0025 29.4 8.2 23 9-32 216-238 (364)
89 3kke_A LACI family transcripti 42.9 1E+02 0.0035 26.9 8.8 118 176-325 132-263 (303)
90 3ezx_A MMCP 1, monomethylamine 42.1 98 0.0034 26.7 8.3 101 193-324 114-214 (215)
91 3egc_A Putative ribose operon 42.1 1E+02 0.0035 26.5 8.6 118 176-325 126-252 (291)
92 2php_A Uncharacterized protein 41.9 85 0.0029 27.1 7.7 21 305-327 160-180 (192)
93 2i0f_A 6,7-dimethyl-8-ribityll 40.5 1.6E+02 0.0054 24.5 9.1 124 177-326 14-150 (157)
94 2fep_A Catabolite control prot 40.1 1.4E+02 0.0049 25.7 9.3 118 176-325 134-261 (289)
95 3mvn_A UDP-N-acetylmuramate:L- 39.1 1.3E+02 0.0045 24.3 8.3 96 208-326 41-137 (163)
96 1c2y_A Protein (lumazine synth 39.1 1.3E+02 0.0046 25.0 8.3 123 176-326 14-148 (156)
97 4b4o_A Epimerase family protei 39.1 65 0.0022 28.3 6.8 88 216-323 195-293 (298)
98 3hbl_A Pyruvate carboxylase; T 39.0 35 0.0012 37.4 5.8 30 9-38 198-227 (1150)
99 3zwt_A Dihydroorotate dehydrog 38.5 1E+02 0.0034 29.1 8.3 69 207-285 150-230 (367)
100 3rot_A ABC sugar transporter, 38.4 1.4E+02 0.0048 25.8 9.0 122 175-325 130-258 (297)
101 1hqk_A 6,7-dimethyl-8-ribityll 38.2 1E+02 0.0034 25.7 7.3 124 176-326 13-148 (154)
102 2hmc_A AGR_L_411P, dihydrodipi 37.6 1.6E+02 0.0055 27.4 9.6 104 206-326 36-147 (344)
103 3brq_A HTH-type transcriptiona 37.4 1.5E+02 0.005 25.3 8.8 118 176-325 140-266 (296)
104 2rgy_A Transcriptional regulat 37.2 1.3E+02 0.0045 25.9 8.5 117 176-325 129-255 (290)
105 1w96_A ACC, acetyl-coenzyme A 37.1 56 0.0019 32.3 6.6 29 9-37 273-301 (554)
106 3nq4_A 6,7-dimethyl-8-ribityll 36.4 1.9E+02 0.0063 24.1 11.5 125 175-326 12-149 (156)
107 1qpz_A PURA, protein (purine n 36.3 1.4E+02 0.0048 26.5 8.8 118 176-325 178-304 (340)
108 1rvv_A Riboflavin synthase; tr 36.1 1E+02 0.0034 25.7 7.0 124 176-326 13-148 (154)
109 1vkz_A Phosphoribosylamine--gl 35.9 40 0.0014 31.8 5.1 22 10-32 185-206 (412)
110 1y7o_A ATP-dependent CLP prote 35.9 41 0.0014 29.3 4.8 61 217-294 60-122 (218)
111 2hsg_A Glucose-resistance amyl 35.8 1.7E+02 0.0057 25.9 9.1 118 176-325 178-305 (332)
112 2f6i_A ATP-dependent CLP prote 35.5 54 0.0018 28.6 5.5 61 208-286 42-107 (215)
113 1req_A Methylmalonyl-COA mutas 34.5 90 0.0031 32.5 7.7 97 206-326 626-722 (727)
114 1kz1_A 6,7-dimethyl-8-ribityll 34.3 2E+02 0.0069 23.9 10.3 126 176-327 18-156 (159)
115 4dgf_A Sulfate transporter sul 33.6 1.3E+02 0.0044 23.4 7.1 78 236-328 52-132 (135)
116 3va7_A KLLA0E08119P; carboxyla 33.3 81 0.0028 34.8 7.5 31 9-39 223-253 (1236)
117 1xrs_B D-lysine 5,6-aminomutas 33.0 2E+02 0.0069 25.8 9.1 97 207-326 160-257 (262)
118 1dbq_A Purine repressor; trans 32.9 1.6E+02 0.0056 25.0 8.4 91 176-286 127-226 (289)
119 2h0a_A TTHA0807, transcription 32.7 1.9E+02 0.0064 24.5 8.7 115 176-325 115-244 (276)
120 3bbl_A Regulatory protein of L 31.9 2.1E+02 0.0073 24.5 9.0 118 176-325 126-254 (287)
121 3kjx_A Transcriptional regulat 31.7 1.2E+02 0.0042 27.0 7.5 118 176-325 186-313 (344)
122 3k4h_A Putative transcriptiona 31.6 2.3E+02 0.0077 24.1 9.1 16 85-100 29-44 (292)
123 2qf7_A Pyruvate carboxylase pr 30.9 39 0.0013 37.1 4.5 29 9-37 214-242 (1165)
124 2iks_A DNA-binding transcripti 30.7 2.5E+02 0.0087 24.0 9.6 80 176-277 139-224 (293)
125 3p04_A Uncharacterized BCR; SE 30.4 62 0.0021 24.4 4.3 41 240-295 8-48 (87)
126 3u4j_A NAD-dependent aldehyde 30.3 3.1E+02 0.011 26.9 10.7 38 233-286 238-275 (528)
127 3bf0_A Protease 4; bacterial, 30.3 76 0.0026 31.9 6.3 65 214-295 70-138 (593)
128 1f76_A Dihydroorotate dehydrog 29.5 2.2E+02 0.0076 25.8 9.0 84 191-285 123-221 (336)
129 3viv_A 441AA long hypothetical 29.4 77 0.0026 27.9 5.5 50 233-295 36-90 (230)
130 2nly_A BH1492 protein, diverge 29.3 3E+02 0.01 24.4 10.6 50 212-268 78-128 (245)
131 3oix_A Putative dihydroorotate 29.2 2.2E+02 0.0077 26.5 9.0 76 208-298 133-217 (345)
132 1a9x_A Carbamoyl phosphate syn 29.0 1.8E+02 0.0061 31.4 9.3 25 9-33 748-772 (1073)
133 3qk7_A Transcriptional regulat 28.9 2.1E+02 0.0072 24.7 8.4 16 85-100 26-41 (294)
134 3ed6_A Betaine aldehyde dehydr 28.8 4.1E+02 0.014 26.0 11.3 38 233-286 247-284 (520)
135 3h75_A Periplasmic sugar-bindi 28.4 1.5E+02 0.0053 26.3 7.6 120 182-321 120-250 (350)
136 3fwz_A Inner membrane protein 28.4 2E+02 0.007 22.1 12.4 118 173-325 5-137 (140)
137 2xcl_A Phosphoribosylamine--gl 28.4 58 0.002 30.5 4.8 23 9-32 180-202 (422)
138 3rot_A ABC sugar transporter, 28.3 2.1E+02 0.0073 24.6 8.4 32 182-215 110-141 (297)
139 2fvy_A D-galactose-binding per 27.5 2.9E+02 0.0099 23.6 13.0 119 177-325 142-269 (309)
140 1th8_B Anti-sigma F factor ant 27.4 1.8E+02 0.0063 21.2 6.9 71 236-321 43-113 (116)
141 4hyl_A Stage II sporulation pr 27.2 1.8E+02 0.0063 21.5 6.8 86 215-321 27-112 (117)
142 1w3i_A EDA, 2-keto-3-deoxy glu 27.1 3.4E+02 0.012 24.3 10.7 106 207-327 10-121 (293)
143 3o74_A Fructose transport syst 26.9 2.2E+02 0.0075 23.9 8.0 17 182-198 102-118 (272)
144 2i2x_B MTAC, methyltransferase 26.3 2.5E+02 0.0087 24.6 8.5 105 186-326 139-243 (258)
145 3tml_A 2-dehydro-3-deoxyphosph 26.3 1.5E+02 0.005 27.2 6.9 23 284-306 70-92 (288)
146 2nuw_A 2-keto-3-deoxygluconate 26.3 3.5E+02 0.012 24.1 9.7 104 207-327 10-121 (288)
147 1h4x_A SPOIIAA, anti-sigma F f 26.0 1.5E+02 0.0052 21.9 6.1 73 235-323 41-113 (117)
148 3s2u_A UDP-N-acetylglucosamine 25.9 1.8E+02 0.0063 26.5 7.8 55 258-320 197-252 (365)
149 2o20_A Catabolite control prot 25.9 2.4E+02 0.0083 24.8 8.4 116 176-325 181-305 (332)
150 1y80_A Predicted cobalamin bin 25.4 3E+02 0.01 23.0 11.6 100 193-325 110-209 (210)
151 3jvd_A Transcriptional regulat 25.1 2.4E+02 0.0083 25.0 8.3 113 176-325 175-297 (333)
152 3g85_A Transcriptional regulat 24.9 2.2E+02 0.0074 24.3 7.7 16 85-100 28-43 (289)
153 3jvd_A Transcriptional regulat 24.8 3.4E+02 0.012 24.0 9.2 17 84-100 79-95 (333)
154 4a26_A Putative C-1-tetrahydro 24.7 4.1E+02 0.014 24.3 10.8 89 205-308 69-195 (300)
155 3qua_A Putative uncharacterize 24.4 3.3E+02 0.011 23.3 9.5 69 239-321 120-196 (199)
156 3rh9_A Succinate-semialdehyde 24.4 3.7E+02 0.013 26.2 10.0 43 224-286 219-261 (506)
157 2nwr_A 2-dehydro-3-deoxyphosph 24.3 1.9E+02 0.0066 26.0 7.3 61 240-306 5-79 (267)
158 2pb9_A Phosphomethylpyrimidine 24.0 2.3E+02 0.008 24.3 7.4 21 305-327 169-189 (195)
159 1jub_A Dihydroorotate dehydrog 23.9 2.8E+02 0.0097 24.6 8.5 58 213-285 102-168 (311)
160 3bul_A Methionine synthase; tr 23.5 5.7E+02 0.019 25.6 11.3 97 206-326 128-224 (579)
161 3r31_A BADH, betaine aldehyde 23.4 5.2E+02 0.018 25.2 11.2 38 233-286 226-263 (517)
162 2nyt_A Probable C->U-editing e 23.3 1.2E+02 0.0042 25.9 5.5 52 246-308 90-145 (190)
163 4fu0_A D-alanine--D-alanine li 23.2 2.6E+02 0.0089 25.5 8.2 23 9-32 214-236 (357)
164 3ek1_A Aldehyde dehydrogenase; 23.1 4.7E+02 0.016 25.4 10.5 38 233-286 245-282 (504)
165 1tg6_A Putative ATP-dependent 23.1 1.6E+02 0.0053 26.8 6.4 69 208-290 85-155 (277)
166 3t6o_A Sulfate transporter/ant 23.0 2.4E+02 0.0083 21.1 7.1 73 234-321 46-119 (121)
167 3i0p_A Malate dehydrogenase; a 22.8 1E+02 0.0036 29.1 5.4 64 234-305 280-344 (365)
168 3ksm_A ABC-type sugar transpor 22.8 3.3E+02 0.011 22.7 11.1 90 210-325 165-254 (276)
169 3ifg_A Succinate-semialdehyde 22.8 4.1E+02 0.014 25.6 10.0 38 233-286 225-262 (484)
170 1b0a_A Protein (fold bifunctio 22.6 4.4E+02 0.015 24.0 11.5 34 206-243 66-99 (288)
171 3k2w_A Betaine-aldehyde dehydr 22.5 3.8E+02 0.013 25.9 9.7 22 84-105 74-95 (497)
172 3hcw_A Maltose operon transcri 22.5 3.6E+02 0.012 23.1 8.8 17 182-198 113-129 (295)
173 3d02_A Putative LACI-type tran 22.5 3.6E+02 0.012 22.9 10.0 89 211-325 168-256 (303)
174 3h5o_A Transcriptional regulat 22.3 2.1E+02 0.0072 25.3 7.3 118 176-325 179-305 (339)
175 3m9w_A D-xylose-binding peripl 22.1 2.5E+02 0.0084 24.3 7.6 91 212-328 167-258 (313)
176 1geq_A Tryptophan synthase alp 22.0 2.9E+02 0.0099 23.5 7.9 30 209-244 11-40 (248)
177 2d4e_A 5-carboxymethyl-2-hydro 21.8 5.6E+02 0.019 24.9 11.2 24 83-106 87-110 (515)
178 3ros_A NAD-dependent aldehyde 21.7 3.2E+02 0.011 26.5 8.9 38 233-286 199-236 (484)
179 3vow_A Probable DNA DC->DU-edi 21.6 76 0.0026 27.4 3.8 64 233-308 81-148 (190)
180 3k9c_A Transcriptional regulat 21.5 3.8E+02 0.013 22.8 10.0 17 182-198 108-124 (289)
181 3e3m_A Transcriptional regulat 21.3 2.4E+02 0.0083 25.1 7.5 67 191-277 210-277 (355)
182 3tb6_A Arabinose metabolism tr 21.2 3.7E+02 0.013 22.6 9.4 118 176-325 138-267 (298)
183 3jz4_A Succinate-semialdehyde 20.9 4.4E+02 0.015 25.3 9.7 38 233-286 222-259 (481)
184 1jye_A Lactose operon represso 20.7 4.4E+02 0.015 23.3 9.3 80 176-277 180-265 (349)
185 8abp_A L-arabinose-binding pro 20.6 4E+02 0.014 22.7 10.3 122 177-325 134-267 (306)
186 4e4g_A Methylmalonate-semialde 20.5 6E+02 0.021 24.8 11.8 43 224-286 233-275 (521)
187 2imp_A Lactaldehyde dehydrogen 20.5 5.1E+02 0.017 24.8 10.0 23 83-105 67-89 (479)
188 4f2d_A L-arabinose isomerase; 20.4 6.1E+02 0.021 24.8 12.9 70 191-281 34-103 (500)
189 3fs2_A 2-dehydro-3-deoxyphosph 20.4 2.4E+02 0.008 26.0 7.1 23 284-306 94-116 (298)
190 3b0p_A TRNA-dihydrouridine syn 20.2 4.2E+02 0.014 24.4 9.0 58 214-285 67-138 (350)
191 3k9c_A Transcriptional regulat 20.2 2.8E+02 0.0097 23.7 7.5 117 176-325 127-251 (289)
192 3llo_A Prestin; STAS domain, c 20.1 2.4E+02 0.0084 21.7 6.5 71 234-321 62-138 (143)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=8.4e-82 Score=623.26 Aligned_cols=318 Identities=43% Similarity=0.808 Sum_probs=292.9
Q ss_pred cceeecEEEEeecCCC--CceEEEEEEEeCCCCeEEEeccCCCccccccccceeeecCCCcCCCHHHH-HHHHhcCChhH
Q 020234 4 CKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDAC-APLIATLPLEF 80 (329)
Q Consensus 4 ~~~~v~~vlVee~~~~--~~E~Ylsi~~Dr~~~~ii~S~~GGvdIE~~~d~i~k~~i~p~~gl~~~~~-~~l~~~l~~~~ 80 (329)
..++|++|+||+|+++ .+|||+|+++||.+|+|+||++|||+||+++++..++++||..+++.+++ ++++.+++..+
T Consensus 98 ~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~l~~~~~~~~ll~g~~~~d 177 (425)
T 3mwd_A 98 ATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDK 177 (425)
T ss_dssp EEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCCCCHHHHHHTTTTTSCTTT
T ss_pred CCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCccccCHHHHHHHHHcCCcHHH
Confidence 4578999999999986 59999999999999999999999999999998887889999889998887 66777787788
Q ss_pred HHHHHHHHHHHHHHhhhcCcceeeeeceeccCCceEEeeceeecCccccccccccccccccCCCCCCCCCcccccccccc
Q 020234 81 RGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLD 160 (329)
Q Consensus 81 ~~~~~~il~~L~~~f~e~d~~llEINPL~~~~g~~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 160 (329)
+++++++|.+||++|+++|++++|||||++..++++|+|||++|||||+||||+.|..+++|++|.++.+|+|.++.++|
T Consensus 178 ~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ 257 (425)
T 3mwd_A 178 KEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLD 257 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhh
Confidence 99999999999999999999999999999933349999999999999999999889888988889999999999998888
Q ss_pred hhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCC--CCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCE
Q 020234 161 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRK 238 (329)
Q Consensus 161 e~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg--~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~ 238 (329)
++++++++||||+|+||||||+||||++|+|||+|.++ || +||||+|+||+|++++++++++.+++++++||++|+
T Consensus 258 a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~ 335 (425)
T 3mwd_A 258 AKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG 335 (425)
T ss_dssp HTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTC
T ss_pred hhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 89999999999999999999999999999999999996 88 799999999999999999987777777777999999
Q ss_pred EEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHH
Q 020234 239 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGIC 318 (329)
Q Consensus 239 vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av 318 (329)
+||||||||++||+||+||+||++|+++..++....++||||||+|||+++|+++|+++.+++|+|+++||++.+|+++|
T Consensus 336 i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgip~~~~gpe~~~~~i~ 415 (425)
T 3mwd_A 336 KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIV 415 (425)
T ss_dssp EEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTCCEEEECTTSCTTHHH
T ss_pred EEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCCceEEeCccchHHHHH
Confidence 99999999999999999999999999997432222579999999999999999999999888899999999999999999
Q ss_pred HHHHH
Q 020234 319 KQAID 323 (329)
Q Consensus 319 ~~~v~ 323 (329)
++|+.
T Consensus 416 ~~a~~ 420 (425)
T 3mwd_A 416 GMALG 420 (425)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99874
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.1e-79 Score=641.48 Aligned_cols=318 Identities=43% Similarity=0.814 Sum_probs=296.8
Q ss_pred cceeecEEEEeecCCC--CceEEEEEEEeCCCCeEEEeccCCCccccccccceeeecCCCcCCCHHHH-HHHHhcCChhH
Q 020234 4 CKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDAC-APLIATLPLEF 80 (329)
Q Consensus 4 ~~~~v~~vlVee~~~~--~~E~Ylsi~~Dr~~~~ii~S~~GGvdIE~~~d~i~k~~i~p~~gl~~~~~-~~l~~~l~~~~ 80 (329)
..++|++|+||+|+++ .+|||+|+++||.+|+|+||++|||+||+++|++.+++|||..+++.+++ ++++.+++..+
T Consensus 98 p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGvdIE~vad~~~~~~I~p~~gl~~~~a~~~ll~g~~~~d 177 (829)
T 3pff_A 98 ATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDK 177 (829)
T ss_dssp EEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCCHHHHSEEEEEETTCCCCHHHHHHTTTTTSCGGG
T ss_pred CCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEECCCCcchhhhhhhceEEecCCccccCHHHHHHHHHcCCCHHH
Confidence 4578999999999986 59999999999999999999999999999999888899999999999998 66777888889
Q ss_pred HHHHHHHHHHHHHHhhhcCcceeeeeceec-cCCceEEeeceeecCccccccccccccccccCCCCCCCCCccccccccc
Q 020234 81 RGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSL 159 (329)
Q Consensus 81 ~~~~~~il~~L~~~f~e~d~~llEINPL~~-~~g~~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 159 (329)
+++++++|.+||++|+++|++++|||||++ .+| ++|+|||++|||||+|||++.|..+++|.+|.++.+|+|.++.++
T Consensus 178 ~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~ 256 (829)
T 3pff_A 178 KEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADL 256 (829)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEEGGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeeccchhhhCchhhhhhhccccccccCChhhhhhhhh
Confidence 999999999999999999999999999999 555 999999999999999999988988888888999999999999989
Q ss_pred chhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCC--CCCceeeccCCCCHHHHHHHHHHHhcccccCCCCC
Q 020234 160 DEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 237 (329)
Q Consensus 160 ~e~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg--~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~ 237 (329)
|++++++++||||+|+||||||+|||||+|+|||+|+++ || +||||+|+||+|+.++++++++.+++++++||++|
T Consensus 257 ~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~--Gg~~~pANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk 334 (829)
T 3pff_A 257 DAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPD 334 (829)
T ss_dssp HHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCTTTBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTT
T ss_pred hhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHc--CCCCCCceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999996 78 79999999999999999999888888888899999
Q ss_pred EEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHH
Q 020234 238 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 317 (329)
Q Consensus 238 ~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~a 317 (329)
++||||||||+|||+||+||+||++|+++..++....++||||||+|||+++|+++|+++.+++|+|+++||++++|+++
T Consensus 335 ~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~~lgl~i~v~g~e~~mt~i 414 (829)
T 3pff_A 335 GKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAI 414 (829)
T ss_dssp CEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHCCCEEEECTTSCTTHH
T ss_pred EEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCccccCCcEEEeCCcccHHHH
Confidence 99999999999999999999999999999753222358999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 020234 318 CKQAIDC 324 (329)
Q Consensus 318 v~~~v~~ 324 (329)
|++|+..
T Consensus 415 v~~a~~~ 421 (829)
T 3pff_A 415 VGMALGH 421 (829)
T ss_dssp HHHHHTS
T ss_pred HHHHhcc
Confidence 9999864
No 3
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=2.5e-70 Score=538.20 Aligned_cols=287 Identities=22% Similarity=0.328 Sum_probs=264.3
Q ss_pred eecEEEEeecCCCCceEEEEEEEeCC-C-CeEEEeccCCCccccc----cccceeeecCCCcCCCHHHHHHHHhcCC--h
Q 020234 7 PITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDKVKTIFLPTEKHMTLDACAPLIATLP--L 78 (329)
Q Consensus 7 ~v~~vlVee~~~~~~E~Ylsi~~Dr~-~-~~ii~S~~GGvdIE~~----~d~i~k~~i~p~~gl~~~~~~~l~~~l~--~ 78 (329)
++++|+|||++++.+|+|++++.||. + |++++|++|||+||++ ||+++++++||..++++++++++++.++ .
T Consensus 99 ~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l~~~~a~~l~~~lg~~~ 178 (395)
T 2fp4_B 99 KVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178 (395)
T ss_dssp ECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCCCHHHHHHHHHHTTCCH
T ss_pred ccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCCCHHHHHHHHHHhCcCH
Confidence 48899999999999999999999998 3 8999999999999998 9999999999999999999999999654 4
Q ss_pred hHHHHHHHHHHHHHHHhhhcCcceeeeeceec-cCCceEEeeceeecCccccccccccccccccCCCCCCCCCccccccc
Q 020234 79 EFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIH 157 (329)
Q Consensus 79 ~~~~~~~~il~~L~~~f~e~d~~llEINPL~~-~~g~~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~~~~~~~e~~~~ 157 (329)
...+++.+++.+||++|.++|++++|||||++ .+|+++|+|+|+.|||||+||||+++ +++++ .+.+|.
T Consensus 179 ~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~-~~~d~----~~~~~~----- 248 (395)
T 2fp4_B 179 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF-AMDDK----SENEPI----- 248 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHH-TTCCC----TTSCHH-----
T ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchh-hhcCC----CccChh-----
Confidence 68899999999999999999999999999999 78899999999999999999999964 35333 333444
Q ss_pred ccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCC
Q 020234 158 SLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 237 (329)
Q Consensus 158 ~~~e~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~ 237 (329)
|.+|++++|+||+|+||||||+||||++|+|||+|.++ ||+||||+|+||+|++++++++++++++ ||++|
T Consensus 249 ---e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~--Gg~paNflDvgG~a~~e~~~~al~~il~----d~~v~ 319 (395)
T 2fp4_B 249 ---ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLN--GGKPANFLDLGGGVKESQVYQAFKLLTA----DPKVE 319 (395)
T ss_dssp ---HHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSSCCHHHHHHHHHHHHH----CTTCC
T ss_pred ---hhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcEEECCCCCHHHHHHHHHHHhC----CCCCC
Confidence 45688999999999999999999999999999999996 8999999999999999999999999999 99999
Q ss_pred EEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHH
Q 020234 238 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 317 (329)
Q Consensus 238 ~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~a 317 (329)
+||||+||||++|++|| +||++|+++.. .++|||||++|+|+++++++|+++ |+|++. ++||++|
T Consensus 320 ~ilvni~ggi~~~d~vA---~gii~a~~~~~-----~~~Pivvrl~G~n~~~g~~~L~~~----gl~~~~---~~~~~~A 384 (395)
T 2fp4_B 320 AILVNIFGGIVNCAIIA---NGITKACRELE-----LKVPLVVRLEGTNVHEAQNILTNS----GLPITS---AVDLEDA 384 (395)
T ss_dssp EEEEEEEESSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEEETTHHHHHHHHHHT----CSCCEE---CSSHHHH
T ss_pred EEEEEecCCccCcHHHH---HHHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHHHC----CCceEe---CCCHHHH
Confidence 99999999999999999 99999999974 579999999999999999999998 999865 5899999
Q ss_pred HHHHHHHhhh
Q 020234 318 CKQAIDCIMS 327 (329)
Q Consensus 318 v~~~v~~~~~ 327 (329)
++++++++++
T Consensus 385 a~~~v~~~~~ 394 (395)
T 2fp4_B 385 AKKAVASVTK 394 (395)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHhhc
Confidence 9999999864
No 4
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=3.8e-70 Score=535.94 Aligned_cols=288 Identities=23% Similarity=0.318 Sum_probs=267.4
Q ss_pred eeecEEEEeecCCCCceEEEEEEEeCC-C-CeEEEeccCCCccccc----cccceeeecCCCcCCCHHHHHHHHhc--CC
Q 020234 6 GPITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDKVKTIFLPTEKHMTLDACAPLIAT--LP 77 (329)
Q Consensus 6 ~~v~~vlVee~~~~~~E~Ylsi~~Dr~-~-~~ii~S~~GGvdIE~~----~d~i~k~~i~p~~gl~~~~~~~l~~~--l~ 77 (329)
..+++|+||+++++.+|+|++++.||. + |++++|++|||+||++ ||++.+++++|..+++++++++++.. ++
T Consensus 91 ~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~~a~~~~~~lG~~ 170 (388)
T 2nu8_B 91 QPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLE 170 (388)
T ss_dssp EECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHHHHHHHHHHTTCC
T ss_pred cccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHHHHHHHHHHcCCC
Confidence 458899999999999999999999998 4 8999999999999986 68999999999999999999999996 45
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCcceeeeeceec-cCCceEEeeceeecCccccccccccccccccCCCCCCCCCcccccc
Q 020234 78 LEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFI 156 (329)
Q Consensus 78 ~~~~~~~~~il~~L~~~f~e~d~~llEINPL~~-~~g~~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~~~~~~~e~~~ 156 (329)
....+++.+++.+||++|.++|++++|||||++ .+|+++|+|||+.|||||+||||+ |.+++++ ++.+|+|.
T Consensus 171 ~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~-~~~~~~~----~~~~~~e~-- 243 (388)
T 2nu8_B 171 GKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-LREMRDQ----SQEDPREA-- 243 (388)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-HHHHCCG----GGSCHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcc-hhhhcCc----cccChhHH--
Confidence 578999999999999999999999999999999 888999999999999999999999 7777655 55666655
Q ss_pred cccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCC
Q 020234 157 HSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDG 236 (329)
Q Consensus 157 ~~~~e~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v 236 (329)
.|++++++|++|+||||||+||||++|+|||++.++ ||+||||+|+||+|+.++++++++++++ ||++
T Consensus 244 ------~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~--Gg~~aNflD~gG~a~~~~~~~~~~~il~----d~~v 311 (388)
T 2nu8_B 244 ------QAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLH--GGEPANFLDVGGGATKERVTEAFKIILS----DDKV 311 (388)
T ss_dssp ------HHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSCCCHHHHHHHHHHHHT----STTC
T ss_pred ------HHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHc--CCCcCceeEecCCCCHHHHHHHHHHHhc----CCCC
Confidence 577889999999999999999999999999999996 8999999999999999999999999998 9999
Q ss_pred CEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHH
Q 020234 237 RKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTG 316 (329)
Q Consensus 237 ~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~ 316 (329)
|++|||+||||++|++|| +||++|+++.. .++|||||++|+|+++++++|+++ |+|++. ++||++
T Consensus 312 ~~ilvni~ggi~~~~~vA---~gii~a~~~~~-----~~~pivvrl~G~n~~~g~~~l~~~----g~~~~~---~~~~~~ 376 (388)
T 2nu8_B 312 KAVLVNIFGGIVRCDLIA---DGIIGAVAEVG-----VNVPVVVRLEGNNAELGAKKLADS----GLNIIA---AKGLTD 376 (388)
T ss_dssp CEEEEEEESCSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEESTTHHHHHHHHHTT----CSSEEE---CSSHHH
T ss_pred CEEEEEecCCcCCchHHH---HHHHHHHHhcC-----CCCeEEEEeCCCCHHHHHHHHHHC----CCceec---CCCHHH
Confidence 999999999999999999 99999999974 579999999999999999999987 999964 589999
Q ss_pred HHHHHHHHhhh
Q 020234 317 ICKQAIDCIMS 327 (329)
Q Consensus 317 av~~~v~~~~~ 327 (329)
|++++++++++
T Consensus 377 aa~~~v~~~~~ 387 (388)
T 2nu8_B 377 AAQQVVAAVEG 387 (388)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhhc
Confidence 99999999864
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=4.2e-67 Score=515.62 Aligned_cols=285 Identities=22% Similarity=0.338 Sum_probs=263.4
Q ss_pred eecEEEEeecCCCCceEEEEEEEeCC-C-CeEEEeccCCCccccc----cccceeeecCCCcCCCHHHHHHHHhc--CCh
Q 020234 7 PITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDKVKTIFLPTEKHMTLDACAPLIAT--LPL 78 (329)
Q Consensus 7 ~v~~vlVee~~~~~~E~Ylsi~~Dr~-~-~~ii~S~~GGvdIE~~----~d~i~k~~i~p~~gl~~~~~~~l~~~--l~~ 78 (329)
.+++|+|||++++.+|+|++++.||. + |+|+||.+|||+||++ ||+++|++|+|..+++++++++++.. ++.
T Consensus 84 ~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~~l~~~~a~~~~~~lG~~g 163 (397)
T 3ufx_B 84 TVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEG 163 (397)
T ss_dssp ECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTTBCCHHHHHHHHHHHTCCS
T ss_pred ccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCCCCCHHHHHHHHHHcCCch
Confidence 57899999999999999999999998 4 8999999999999975 78999999999999999999999985 444
Q ss_pred hHHHHHHHHHHHHHHHhhhcCcceeeeeceec-cCCceEEeeceeecCccccccccccccccccCCCCCCCCCccccccc
Q 020234 79 EFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIH 157 (329)
Q Consensus 79 ~~~~~~~~il~~L~~~f~e~d~~llEINPL~~-~~g~~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~~~~~~~e~~~~ 157 (329)
. ++++.++|.+||++|.++|++++|||||++ .+|+++|+|||++|||||.||||+ |..++++ ++.+|+|.
T Consensus 164 ~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~~~~----~~~~~~e~--- 234 (397)
T 3ufx_B 164 N-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPD-LAELREV----EAEHPLEV--- 234 (397)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHH-HHTTHHH----HCSSHHHH---
T ss_pred H-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchh-hhhhcCc----ccCCHhHH---
Confidence 5 999999999999999999999999999999 788899999999999999999998 7677766 56677654
Q ss_pred ccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCC
Q 020234 158 SLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 237 (329)
Q Consensus 158 ~~~e~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~ 237 (329)
+|++++++||+|+||||||+||+|++|+|+|++..+ ||+|+||+|+||++++++|+++++++++ ||++|
T Consensus 235 -----~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~--G~~~aN~lD~gG~a~~e~~~~al~~~l~----d~~v~ 303 (397)
T 3ufx_B 235 -----EASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRV--GGKPANFLDIGGGAKADVVYNALKVVLK----DPDVK 303 (397)
T ss_dssp -----HHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSCCCHHHHHHHHHHHHT----CTTCC
T ss_pred -----HHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHc--CCCcCCcEecCCCCCHHHHHHHHHHHHc----CCCCC
Confidence 688999999999999999999999999999999996 8999999999999999999999999999 99999
Q ss_pred EEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHH
Q 020234 238 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 317 (329)
Q Consensus 238 ~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~a 317 (329)
+||||+|||+++|++|| ++|++++++.+ .++|||+|+.|+++++++++|++. |||+ |+||++|
T Consensus 304 ~ilv~i~ggi~~~~~vA---~~i~~a~~~~~-----~~kPvvv~~~G~~~~~~~~~l~~~----gip~-----~~~~e~A 366 (397)
T 3ufx_B 304 GVFINIFGGITRADEVA---KGVIRALEEGL-----LTKPVVMRVAGTAEEEAKKLLEGK----PVYM-----YPTSIEA 366 (397)
T ss_dssp EEEEEEEEEEEESHHHH---HHHHHHHTTTC-----CCSCEEEEEEEECHHHHHHHTTTS----SEEE-----CSSHHHH
T ss_pred EEEEECCCCCCCHHHHH---HHHHHHHHhhC-----CCCcEEEEccCCCHHHHHHHHHhC----CCcc-----cCCHHHH
Confidence 99999999999999999 99999998764 479999998888999999999987 9987 8999999
Q ss_pred HHHHHHHhhhc
Q 020234 318 CKQAIDCIMSA 328 (329)
Q Consensus 318 v~~~v~~~~~~ 328 (329)
|++++++++.+
T Consensus 367 a~~~~~l~~~a 377 (397)
T 3ufx_B 367 AKVTVAMKGGA 377 (397)
T ss_dssp HHHHHHSCCSC
T ss_pred HHHHHHHHHHh
Confidence 99999988643
No 6
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.87 E-value=3.5e-22 Score=199.54 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=130.8
Q ss_pred cccccccccccccccCCCCCCCCCcccccccccchhhhccCCceEecC--CCcEEEEEcCCcHHHHHHHHHhccCCCCC-
Q 020234 127 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNP--KGRIWTMVAGGGASVIYADTVGDLGYASE- 203 (329)
Q Consensus 127 nA~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~a~~~~l~yv~l--~g~I~ii~NG~Glam~t~D~l~~~g~gg~- 203 (329)
+|.|||..+. .+ .++.|. .+....++| .+ ++||+||+||||++|+++|++..+ |++
T Consensus 262 ~AafRqaGv~-~v---------~~~~El--------~~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~--Gl~l 320 (457)
T 2csu_A 262 EAAFKQSGVL-VA---------NTIDEM--------LSMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKR--GLKL 320 (457)
T ss_dssp HHHHHHTTCE-EE---------SSHHHH--------HHHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTT--TCEE
T ss_pred HHHHHhCCCe-EE---------CCHHHH--------HHHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHc--CCCC
Confidence 4889999843 22 133332 233445667 66 899999999999999999999996 787
Q ss_pred --------------------CCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe-c---cccCchHHHhhhHHH
Q 020234 204 --------------------LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-G---GGIANFTDVATTFNG 259 (329)
Q Consensus 204 --------------------paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i-~---ggi~~~~~vA~~~~g 259 (329)
++||+|++|++++++|.++++++++ ||+++++|+++ + ||+. |+++| ++
T Consensus 321 ~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~----dp~vd~vlv~~~~~~~Gg~~-~~~~a---~~ 392 (457)
T 2csu_A 321 ATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ----DPNVDMLIAICVVPTFAGMT-LTEHA---EG 392 (457)
T ss_dssp CCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH----STTCSEEEEEEECCCSTTCC-SSHHH---HH
T ss_pred CCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhc----CCCCCEEEEEccccccccCC-chhHH---HH
Confidence 6899999999999999999999999 99999999999 3 3354 78888 99
Q ss_pred HHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 260 IIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 260 ii~al~~~~~~~~~~~~pvvv-rl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
+++++++.. .++|+++ |++|++.++++++|+++ |||+ |++|++|++++..+++
T Consensus 393 i~~al~~~~-----~~kPvvv~~~~g~~~~~~~~~L~~~----Gip~-----~~spe~Av~al~~l~~ 446 (457)
T 2csu_A 393 IIRAVKEVN-----NEKPVLAMFMAGYVSEKAKELLEKN----GIPT-----YERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHHHHC-----CCCCEEEEEECTTTTHHHHHHHHTT----TCCE-----ESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCCEEEEeCCCcchHHHHHHHHhC----CCCc-----cCCHHHHHHHHHHHHH
Confidence 999998863 3588886 79999999999999998 9998 7899999999998875
No 7
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.73 E-value=1.4e-17 Score=151.93 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=99.7
Q ss_pred eecEEEEeecCCCCceEEEEEEEeCC-CCeEEEeccCCCccccccccceeeecCCCcCCCHHHHHHHHhcC---------
Q 020234 7 PITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATL--------- 76 (329)
Q Consensus 7 ~v~~vlVee~~~~~~E~Ylsi~~Dr~-~~~ii~S~~GGvdIE~~~d~i~k~~i~p~~gl~~~~~~~l~~~l--------- 76 (329)
.+.+|+||++++..+|+|++++.|+. +|++++| .||+++|...+... .++| +++++++++.+..
T Consensus 106 ~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~-~Gg~~iE~~~d~~~--~~~P---l~~~~~~~~~~~~~~~~~~~g~ 179 (238)
T 1wr2_A 106 EILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFG-LGGIFVEILKDVTF--RLVP---ITEKDARKMIQEIKAYPILAGA 179 (238)
T ss_dssp CCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEE-ECSTTHHHHCCCEE--EESS---CCHHHHHHHHHTSTTHHHHHCC
T ss_pred ccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEe-cCCceeeeecceee--ecCC---CCHHHHHHHHHHHHHHHHhcCC
Confidence 36899999999999999999999995 7999999 99999998877443 5667 7888877776632
Q ss_pred ---ChhHHHHHHHHHHHHHHHhhhcC--cceeeeeceec-cCC-ceEEeeceeecCcc
Q 020234 77 ---PLEFRGKIGDFIMGVFAVFQDLD--FSFIEMNPFTL-VNG-EPYPLDMRGELDDT 127 (329)
Q Consensus 77 ---~~~~~~~~~~il~~L~~~f~e~d--~~llEINPL~~-~~g-~~~alDaki~iDdn 127 (329)
+..+++.+.++|.+||++|.+.| .+++|||||.+ .+| +++|+|||+.+|||
T Consensus 180 ~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~~~~~~~ 237 (238)
T 1wr2_A 180 RGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237 (238)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC
T ss_pred CCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEEEEeCCC
Confidence 22578999999999999999998 89999999999 777 89999999999997
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.31 E-value=4.8e-12 Score=126.69 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=100.7
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCC---------------------------CCceeeccCCCCHHHHHHHHHHHh
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASE---------------------------LGNYAEYSGAPNEEEVLQYARVVI 227 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~---------------------------paN~lDlgG~a~~e~~~~a~~ill 227 (329)
+.||++++||||++.+++|.+.. |.+.. .+||+|+. ++++|.++++.++
T Consensus 249 G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l 324 (480)
T 3dmy_A 249 SGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLG 324 (480)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHh
Confidence 67899999999999999999877 21111 24777776 7899999999999
Q ss_pred cccccCCCCCEEEE--Ee-ccccCch-HHHhhhHHHHHHHHHHhhhhhhcccce--EEEEeCCCC-H----HHHHHHHHH
Q 020234 228 DCATADPDGRKRAL--LI-GGGIANF-TDVATTFNGIIRALREKESKLKAARMH--IFVRRGGPN-Y----QTGLAKMRA 296 (329)
Q Consensus 228 ~~~~~~~~v~~vlv--~i-~ggi~~~-~~vA~~~~gii~al~~~~~~~~~~~~p--vvvrl~G~~-~----~~ar~~l~~ 296 (329)
+ ||+++++|+ .+ +++.+++ +++| ++|+++.++.. .++| ++++++|+. . ++++++|++
T Consensus 325 ~----D~~vd~vlv~~v~~~~~~~d~~~~~a---~ai~~~~~~~~-----~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~ 392 (480)
T 3dmy_A 325 A----KPQVRVLLLDVVIGFGATADPAASLV---SAWQKACAARL-----DNQPLYAIATVTGTERDPQCRSQQIATLED 392 (480)
T ss_dssp G----CTTEEEEEEEEECSTTSCSCHHHHHH---HHHHHHHHTSC-----TTSCCEEEEEEESCTTSTTCHHHHHHHHHH
T ss_pred c----CCCCCEEEEEeecCCCCCCChHHHHH---HHHHHHHHhcc-----CCCCeEEEEEecCcccchhhHHHHHHHHHh
Confidence 9 999999998 44 6777775 7777 99988765431 2466 556798874 2 356799999
Q ss_pred hccccCCceeecCCCCCHHHHHHHHHHHhhh
Q 020234 297 LGEELGIPLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 297 ~~~~~gip~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+ |||+ |.++++||+++..+++.
T Consensus 393 a----GIp~-----f~spe~Av~a~~~l~~~ 414 (480)
T 3dmy_A 393 A----GIAV-----VSSLPEATLLAAALIHP 414 (480)
T ss_dssp T----TCEE-----CSSHHHHHHHHHHHTSC
T ss_pred C----CCcc-----cCCHHHHHHHHHHHHhc
Confidence 8 9998 89999999999988753
No 9
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=97.46 E-value=0.00062 Score=65.04 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCC--CCHHHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchH
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 251 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~--a~~e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~ 251 (329)
.|+||+++-.|+++...+|.+... |--..-++-+|++ ++. .+.+.++.+.+ ||++++|++.. .+|+.+
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~--g~G~S~~VsiGn~~~~d~-~~~D~l~~~~~----Dp~T~~I~l~gEi~g~~e-- 238 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRT--TDGVYEGVAIGGDRYPGS-TFMDHVLRYQD----TPGVKMIVVLGEIGGTEE-- 238 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHH--SSCEEEEEECCSSSSCSS-CHHHHHHHHHT----CTTCCEEEEEEESSSSHH--
T ss_pred CCCEEEEeCchHHHHHHHHHHHhc--CCCeEEEEECCCCccCCC-CHHHHHHHHhc----CCCCCEEEEEEecCChHH--
Confidence 799999999999999999999887 4446788999998 443 47888888888 99999998875 676643
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 020234 252 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 288 (329)
Q Consensus 252 ~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~ 288 (329)
+.+++++++.. .++|||+...|..+.
T Consensus 239 ------~~~~~~~r~~~-----~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 239 ------YKICRGIKEGR-----LTKPIVCWCIGTCAT 264 (334)
T ss_dssp ------HHHHHHHHTTS-----CCSCEEEEEECTTCC
T ss_pred ------HHHHHHHHhhc-----CCCCEEEEEcCCCcc
Confidence 23445566532 479999886665543
No 10
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=97.19 E-value=0.00095 Score=62.87 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=72.3
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCC-HHHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchHH
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 252 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~-~e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~~ 252 (329)
.|+||+++-.|+++...+|.+... |--...++-+|+++. .-.+.+.++.+.+ ||++++|++.. .+|- ..+
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~S~~vs~G~~~~~~~~~~d~l~~~~~----Dp~T~~I~l~~E~~g~--~e~ 223 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQV--GLGQSLCVGIGGDPFNGTDFTDCLEIFLN----DPATEGIILIGEIGGN--AEE 223 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSCCHHHHHHHHHH----CTTCCEEEEEEESSSS--HHH
T ss_pred CCCEEEEecchHHHHHHHHHHHhc--CCCeeEEeccCCCcCCCCCHHHHHHHHhc----CCCCcEEEEEEecCCc--hhh
Confidence 699999999999999999999886 555788999999984 4568889999888 99999999888 5543 223
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 253 VATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 253 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
-+ +.++++.++. .+++|||+...|..
T Consensus 224 ~~---~~f~~~~~~~-----~~~KPVv~~k~G~s 249 (305)
T 2fp4_A 224 NA---AEFLKQHNSG-----PKSKPVVSFIAGLT 249 (305)
T ss_dssp HH---HHHHHHHSCS-----TTCCCEEEEEECTT
T ss_pred HH---HHHHHHHHHh-----cCCCCEEEEEecCC
Confidence 34 5555554332 14799997755444
No 11
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=97.08 E-value=0.002 Score=64.43 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=91.5
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCC-----CHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-----NEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a-----~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.|+||+++-.|+++...+|.+... |--...++-+|+.+ ..-.+.+.++.+.+ ||++++|++.+=+ +
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~~--g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~----Dp~T~~I~ly~E~-~-- 182 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALA--GEGITHAIGLGGRDLSREVGGISALTALEMLSA----DEKSEVLAFVSKP-P-- 182 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHT----CTTCCEEEEEESC-C--
T ss_pred CCCEEEEeccHHHHHHHHHHHHHc--CCCceEEEEcCCCccccccCCCCHHHHHHHHhc----CCCCCEEEEEEec-C--
Confidence 689999999999999999999886 55568899999984 55669999999998 9999999987733 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
.+.++ +.++++++. .++|||+...|.+... |+++ |+-. .+|++|....+.-++.
T Consensus 183 ~e~~~---~~f~~~ar~-------~~KPVV~~k~Grs~~g----~r~~----Gvir-----v~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 183 AEAVR---LKIVNAMKA-------TGKPTVALFLGYTPAV----ARDE----NVWF-----ASSLDEAARLACLLSR 236 (480)
T ss_dssp CHHHH---HHHHHHHHH-------HCSCEEEEETTCCCSS----SEET----TEEE-----ESSHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHh-------CCCCEEEEEeCCCCcc----cccC----CEEE-----ECCHHHHHHHHHHHhc
Confidence 25566 666776663 2699998866665332 4444 8753 5799998888776664
No 12
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=97.05 E-value=0.0033 Score=58.61 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchHH
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 252 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~-e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~~ 252 (329)
.|+||+++-.|+++...+|.+... |--...++-+|+++.. -.+.+.++.+.+ ||++++|++.. .+| +..+
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~t~~I~l~~E~~~--~~~~ 215 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQA--GLGTTTTVGIGGDPVIGTTFKDLLPLFNE----DPETEAVVLIGEIGG--SDEE 215 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSCCSSCHHHHHHHHHT----CTTCCEEEEEECSSS--SHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCC--CHHH
Confidence 699999999999999999999886 4556889999999852 457888888888 99999999888 443 2233
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH----------------HHHHhccccCCceeecCCCCCHHH
Q 020234 253 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA----------------KMRALGEELGIPLEVYGPEATMTG 316 (329)
Q Consensus 253 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~----------------~l~~~~~~~gip~~~~g~~~~~~~ 316 (329)
.+ ...+++ . .++|||+...|.+...+++ ....++++.|+.. .++++|
T Consensus 216 ~~---~~~~~~----~-----~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~-----~~~~~e 278 (288)
T 1oi7_A 216 EA---AAWVKD----H-----MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPV-----ADTIDE 278 (288)
T ss_dssp HH---HHHHHH----H-----CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCB-----CSSHHH
T ss_pred HH---HHHHHh----c-----CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeE-----eCCHHH
Confidence 33 222232 1 4799998877765522221 1222333338865 578887
Q ss_pred HHHHHHHH
Q 020234 317 ICKQAIDC 324 (329)
Q Consensus 317 av~~~v~~ 324 (329)
-...+.++
T Consensus 279 l~~~~~~~ 286 (288)
T 1oi7_A 279 IVELVKKA 286 (288)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 13
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=96.96 E-value=0.0025 Score=59.71 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchHH
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 252 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~-e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~~ 252 (329)
.|+||+++-.|+++...+|.+... |--..-++-+|+++.. -.+.+.++.+.+ ||++++|++-. .+|- ..+
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~~~--~~~ 222 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQ--GIGQSTVIGIGGDPIVGLSFTEALKLFQE----DPQTEALVLIGEIGGD--MEE 222 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEECSSSS--HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCeeEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HHH
Confidence 699999999999999999999886 4556889999999852 357788888888 99999999888 4432 233
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 020234 253 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 287 (329)
Q Consensus 253 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~ 287 (329)
.+ ...+ +... .++|||+...|...
T Consensus 223 ~~---~~~~---~~~~-----~~KPVv~~k~G~s~ 246 (297)
T 2yv2_A 223 RA---AEMI---KKGE-----FTKPVIAYIAGRTA 246 (297)
T ss_dssp HH---HHHH---HTTS-----CCSCEEEEESCCC-
T ss_pred HH---HHHH---Hhcc-----CCCCEEEEEeCCCC
Confidence 23 2222 2221 47999988777665
No 14
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=96.86 E-value=0.0029 Score=59.13 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=67.6
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchHH
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 252 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~-e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~~ 252 (329)
.|+||+++-.|+++...+|.+... |--...++-+|+++.. -.+.+.++.+.+ ||++++|++.. .+|-. .+
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~g~~--~~ 221 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKA--GFGVSTCVGIGGDPIVGLRYKEVLDLFEK----DDETEAIVMIGEIGGGA--EE 221 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEEESSSSH--HH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCeEEEEeeCCCCCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCCH--HH
Confidence 699999999999999999999886 5556889999999852 357788888888 99999999888 54432 22
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 020234 253 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 287 (329)
Q Consensus 253 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~ 287 (329)
.+ .+.+++ .++|||+...|...
T Consensus 222 ~~------~~~~~~-------~~KPVv~~k~G~~~ 243 (294)
T 2yv1_A 222 EA------AKFIEK-------MKKPVIGYIAGQSA 243 (294)
T ss_dssp HH------HHHHTT-------CSSCEEEEEECC--
T ss_pred HH------HHHHHh-------CCCCEEEEEecCCC
Confidence 22 122222 36999988666554
No 15
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=96.62 E-value=0.0057 Score=56.90 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=83.3
Q ss_pred CCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCC-HHHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchHH
Q 020234 175 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 252 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~-~e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~~ 252 (329)
.|+||+++-.|+++...+|.+... |--...++-+||++. .-.+.+.++.+.+ ||++++|++.. .+|- ..+
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~l~~----D~~t~~I~l~~E~~~~--~~~ 215 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDY--GFGQSTCVGIGGDPIPGSNFIDILEMFEK----DPQTEAIVMIGEIGGS--AEE 215 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSSS--HHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhc--CCCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HHH
Confidence 699999999888888889999886 444677888999885 3458888999888 99999999888 5543 334
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH--------------------HHHHHHHHHhccccCCceeecCCCC
Q 020234 253 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY--------------------QTGLAKMRALGEELGIPLEVYGPEA 312 (329)
Q Consensus 253 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~--------------------~~ar~~l~~~~~~~gip~~~~g~~~ 312 (329)
.+ +..+++ . .++|||+...|... +.-...|+++ |+.. .+
T Consensus 216 ~~---~~~~~~----~-----~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~a----Gv~~-----~~ 274 (288)
T 2nu8_A 216 EA---AAYIKE----H-----VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAA----GVKT-----VR 274 (288)
T ss_dssp HH---HHHHHH----H-----CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHT----TCEE-----CS
T ss_pred HH---HHHHHh----c-----CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHC----CCeE-----eC
Confidence 44 334443 2 47999977544433 1223455555 9865 56
Q ss_pred CHHHHHHHHHH
Q 020234 313 TMTGICKQAID 323 (329)
Q Consensus 313 ~~~~av~~~v~ 323 (329)
+++|-...+.+
T Consensus 275 ~~~el~~~~~~ 285 (288)
T 2nu8_A 275 SLADIGEALKT 285 (288)
T ss_dssp SGGGHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77766555443
No 16
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=96.24 E-value=0.022 Score=60.40 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=70.0
Q ss_pred CCCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCC-CHHHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchH
Q 020234 174 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 251 (329)
Q Consensus 174 l~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a-~~e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~ 251 (329)
..|+||+++-.|+++...+|.+... |---.-++-+||++ ..-.+.+.++.+.+ ||++++|++.. .+| ..+.
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~--g~G~S~~VsiGnd~~~d~~~~D~L~~l~~----Dp~T~~Ivly~Ei~g-~~f~ 725 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRT--TDGVYEGVAIGGDRYPGSTFMDHVLRYQD----TPGVKMIVVLGEIGG-TEEY 725 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHH--SSCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSS-SHHH
T ss_pred CCCcEEEEechhHHHHHHHHHHHHc--CCCeEEEEecCCCCCCCCCHHHHHHHHhh----CCCCCEEEEEEecCc-hHHH
Confidence 3689999999999999999999887 33356789999985 23458888888888 99999999888 654 2333
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 020234 252 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 288 (329)
Q Consensus 252 ~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~ 288 (329)
++| +++++.. .++|||+...|..+.
T Consensus 726 ~aA-------~~~~~~~-----~~KPVVa~kaGrsa~ 750 (829)
T 3pff_A 726 KIC-------RGIKEGR-----LTKPIVCWCIGTCAT 750 (829)
T ss_dssp HHH-------HHHHTTS-----CCSCEEEEEECSSTT
T ss_pred HHH-------HHHHhcc-----CCCCEEEEEecCcCc
Confidence 333 2333211 479999886665543
No 17
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=95.80 E-value=0.045 Score=54.08 Aligned_cols=93 Identities=11% Similarity=0.157 Sum_probs=66.9
Q ss_pred CcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhh
Q 020234 176 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAT 255 (329)
Q Consensus 176 g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~ 255 (329)
|+||+++-.|+++...+|.+... |--...++-+|+.++- .+.+.++.+.+ ||++++|++..=+ +.+.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~--g~G~s~~vs~G~~~~~-~~~d~l~~~~~----D~~t~~I~l~~E~-i~~~----- 216 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKE--DIGFSKFISVGNMADV-DFAELMEYLAD----TEEDKAIALYIEG-VRNG----- 216 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHT--TCEESEEEECTTCCSS-CHHHHHHHHTT----CSSCCEEEEEESC-CSCH-----
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc--CCCeeEEEECCCcCCC-CHHHHHHHHhc----CCCCCEEEEEEec-CCCH-----
Confidence 99999999999999999999886 4456789999999853 58888888888 9999999888721 2222
Q ss_pred hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 020234 256 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 288 (329)
Q Consensus 256 ~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~ 288 (329)
+...++++... .++|||+...|.+..
T Consensus 217 --~~f~~~a~~~~-----~~KPVv~~k~G~~~~ 242 (457)
T 2csu_A 217 --KKFMEVAKRVT-----KKKPIIALKAGKSES 242 (457)
T ss_dssp --HHHHHHHHHHH-----HHSCEEEEECC----
T ss_pred --HHHHHHHHHhc-----CCCCEEEEEcCCCcc
Confidence 23333444332 258999886665543
No 18
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=86.83 E-value=4.2 Score=34.03 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=67.2
Q ss_pred cHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHH
Q 020234 186 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 265 (329)
Q Consensus 186 Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~ 265 (329)
|+-++ ..++... | -.-+++|.+.+++.+.++++- .+.+.|.+-.. .+...+.. ..+++.++
T Consensus 34 G~~~v-a~~l~~~--G---~eVi~lG~~~p~e~lv~aa~~--------~~~diV~lS~~--~~~~~~~~---~~~i~~L~ 94 (161)
T 2yxb_A 34 GAKVV-ARALRDA--G---FEVVYTGLRQTPEQVAMAAVQ--------EDVDVIGVSIL--NGAHLHLM---KRLMAKLR 94 (161)
T ss_dssp HHHHH-HHHHHHT--T---CEEECCCSBCCHHHHHHHHHH--------TTCSEEEEEES--SSCHHHHH---HHHHHHHH
T ss_pred HHHHH-HHHHHHC--C---CEEEECCCCCCHHHHHHHHHh--------cCCCEEEEEee--chhhHHHH---HHHHHHHH
Confidence 44443 3566664 3 245788889999987776332 23445554442 23333434 77888888
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhhh
Q 020234 266 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 266 ~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+.+. .+.+ +.+||.-..+-...+++. |+. .+|+..++++++++.+.++.+.
T Consensus 95 ~~g~----~~i~--v~vGG~~~~~~~~~l~~~----G~d-~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 95 ELGA----DDIP--VVLGGTIPIPDLEPLRSL----GIR-EIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp HTTC----TTSC--EEEEECCCHHHHHHHHHT----TCC-EEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCC----CCCE--EEEeCCCchhcHHHHHHC----CCc-EEECCCCCHHHHHHHHHHHHHH
Confidence 7641 2344 445676555544556766 987 3566566778999888877643
No 19
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=83.21 E-value=2.9 Score=39.91 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.6
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCe
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCT 35 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ 35 (329)
..++||++++. +|+.+++..|+..++
T Consensus 235 ~~vlVEe~I~G-~E~~v~vl~~~~~~~ 260 (386)
T 3e5n_A 235 HKVLVEAAVAG-REIECAVLGNAVPHA 260 (386)
T ss_dssp SEEEEEECCCS-EEEEEEEECSSSCEE
T ss_pred CcEEEEcCCCC-eEEEEEEEeCCCceE
Confidence 57999999995 999999998876333
No 20
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=78.94 E-value=2.5 Score=40.81 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=25.2
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEEe
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 39 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~S 39 (329)
..++||++++..+|+.+.+..|+.+.+..+.
T Consensus 207 ~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~ 237 (419)
T 4e4t_A 207 VPCVLEKRLPLKYEVSALIARGADGRSAAFP 237 (419)
T ss_dssp CCEEEEECCCEEEEEEEEEEECTTSCEEECC
T ss_pred CcEEEeecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 4699999999889999999999877654443
No 21
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=77.51 E-value=22 Score=32.42 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=71.8
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 79 (294)
T 2ehh_A 11 TPFK-EGEVDYEALGNLIEFHVD-----NGTDAILVCGTTGESPTLTFEE-HEKVIEFAVKRAA----GRIKVIAGTGGN 79 (294)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHT-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 4667 789999999999999884 6899998876433222111110 1355565555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+-+++.+..+.+ ++.|. |. | ...|.++.++.+-.++.+
T Consensus 80 ~t~~ai~la~~A-~~~Gadavlv~~P~--y-~~~s~~~l~~~f~~va~a 124 (294)
T 2ehh_A 80 ATHEAVHLTAHA-KEVGADGALVVVPY--Y-NKPTQRGLYEHFKTVAQE 124 (294)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCC--S-SCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 999998887765 33463 22 2 135778888888777754
No 22
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=76.11 E-value=17 Score=33.04 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=71.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|++
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 79 (289)
T 2yxg_A 11 TPFK-NKEVDFDGLEENINFLIE-----NGVSGIVAVGTTGESPTLSHEE-HKKVIEKVVDVVN----GRVQVIAGAGSN 79 (289)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCC
Confidence 5677 889999999999999885 5899998876443322211110 1355555555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+-+++.+..+.+. +.|. |. | ...|.++.++.+-.++.+
T Consensus 80 ~t~~ai~la~~a~-~~Gadavlv~~P~--y-~~~s~~~l~~~f~~ia~a 124 (289)
T 2yxg_A 80 CTEEAIELSVFAE-DVGADAVLSITPY--Y-NKPTQEGLRKHFGKVAES 124 (289)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEECCC--S-SCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 9999988877652 3352 32 2 135778888888777654
No 23
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=75.57 E-value=30 Score=27.77 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=66.1
Q ss_pred cHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHH
Q 020234 186 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 265 (329)
Q Consensus 186 Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~ 265 (329)
|+-+++ .++...| -+-+++|.+.+++.+.++++-- +|+ .|.+-.. .+...... +.+++.++
T Consensus 19 G~~~v~-~~l~~~G-----~~Vi~lG~~~p~e~~v~~a~~~------~~d--~v~lS~~--~~~~~~~~---~~~i~~l~ 79 (137)
T 1ccw_A 19 GNKILD-HAFTNAG-----FNVVNIGVLSPQELFIKAAIET------KAD--AILVSSL--YGQGEIDC---KGLRQKCD 79 (137)
T ss_dssp HHHHHH-HHHHHTT-----CEEEEEEEEECHHHHHHHHHHH------TCS--EEEEEEC--SSTHHHHH---TTHHHHHH
T ss_pred HHHHHH-HHHHHCC-----CEEEECCCCCCHHHHHHHHHhc------CCC--EEEEEec--CcCcHHHH---HHHHHHHH
Confidence 444433 5666642 2457899999999887774432 444 4544442 23333334 67788888
Q ss_pred HhhhhhhcccceEEEEeCCCC------HHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 266 EKESKLKAARMHIFVRRGGPN------YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 266 ~~~~~~~~~~~pvvvrl~G~~------~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
+.+. .+++|+ +||.- ..+-.+.+++. |+. .+|++-++..++++.+++..
T Consensus 80 ~~g~----~~i~v~--vGG~~~~~~~~~~~~~~~~~~~----G~d-~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 80 EAGL----EGILLY--VGGNIVVGKQHWPDVEKRFKDM----GYD-RVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp HTTC----TTCEEE--EEESCSSSSCCHHHHHHHHHHT----TCS-EECCTTCCHHHHHHHHHHHH
T ss_pred hcCC----CCCEEE--EECCCcCchHhhhhhHHHHHHC----CCC-EEECCCCCHHHHHHHHHHHh
Confidence 7642 245554 45532 23334567776 996 46667889999998887754
No 24
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=74.73 E-value=3.4 Score=39.77 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=26.3
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEEe
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 39 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~S 39 (329)
..++||++++..+|+.+.+..|+.+.++.+.
T Consensus 199 ~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~ 229 (446)
T 3ouz_A 199 GTMYMEKYIQNPRHIEVQVIGDSFGNVIHVG 229 (446)
T ss_dssp CCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred CCEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 4699999999889999999999887765554
No 25
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=72.32 E-value=27 Score=32.14 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=74.0
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~ 93 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVD-----QGCDGLVVSGTTGESPTTTDGE-KIELLRAVLEAVG----DRARVIAGAGT 93 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCC
Confidence 466666789999999999999885 6899999887444322211110 1355666555432 36899999999
Q ss_pred CCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
++-+++.+..+.+. +.|. |.+ | ..+.++.++.+-.++.+
T Consensus 94 ~~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a 139 (304)
T 3l21_A 94 YDTAHSIRLAKACA-AEGAHGLLVVTPYY-S--KPPQRGLQAHFTAVADA 139 (304)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEECCCS-S--CCCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 99999988887653 2353 332 2 45778888888777654
No 26
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=72.09 E-value=31 Score=31.51 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=72.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 17 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 86 (297)
T 3flu_A 17 TPMNQDGSIHYEQLRDLIDWHIE-----NGTDGIVAVGTTGESATLSVEE-HTAVIEAVVKHVA----KRVPVIAGTGAN 86 (297)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCc
Confidence 45555688999999999999885 6899999877444322211111 1345565555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+.+++.+..+.+. +.|. |. .| ..+.++.++.+-.++.+
T Consensus 87 ~t~~ai~la~~a~-~~Gadavlv~~P~-y~--~~~~~~l~~~f~~va~a 131 (297)
T 3flu_A 87 NTVEAIALSQAAE-KAGADYTLSVVPY-YN--KPSQEGIYQHFKTIAEA 131 (297)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEEECCC-SS--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCC-CC--CCCHHHHHHHHHHHHHh
Confidence 9999998887653 3463 32 11 35777888888777654
No 27
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=70.85 E-value=23 Score=32.53 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=72.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg~ 90 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLE-----NGVNALIVLGTTGESPTVNEDE-REKLVSRTLEIVD----GKIPVIVGAGT 90 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEcCCC
Confidence 46778 899999999999999885 5899998876433222111110 1455665555432 36999999999
Q ss_pred CCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
++-+++.+..+.+. +.|. |. | ...|.++.++.+-.++.+
T Consensus 91 ~st~~ai~la~~A~-~~Gadavlv~~P~--y-~~~s~~~l~~~f~~va~a 136 (306)
T 1o5k_A 91 NSTEKTLKLVKQAE-KLGANGVLVVTPY--Y-NKPTQEGLYQHYKYISER 136 (306)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEECCC--S-SCCCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHH-hcCCCEEEECCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 99999988877652 3353 32 2 134778888888777654
No 28
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=70.73 E-value=8.3 Score=34.25 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHhcccccCCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 020234 213 APNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 290 (329)
Q Consensus 213 ~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~a 290 (329)
..+.+.+.++++-+.+ |+++++|++.+ +||-.. . .+.+.++++..... .++||++.+.|.-..-|
T Consensus 28 ~~~~~~l~~~l~~a~~----d~~v~~ivL~~~s~Gg~~~--~----~~~i~~~l~~~~~~---~~kPVia~v~g~a~~gG 94 (240)
T 3rst_A 28 GYNHRTFLKNLERAKD----DKTVKGIVLKVNSPGGGVY--E----SAEIHKKLEEIKKE---TKKPIYVSMGSMAASGG 94 (240)
T ss_dssp CCCHHHHHHHHHHHHH----CTTEEEEEEEEEECCBCHH--H----HHHHHHHHHHHHHH---HCCCEEEEEEEEEETHH
T ss_pred CcCHHHHHHHHHHHHh----CCCcEEEEEEecCCCCCHH--H----HHHHHHHHHHHHHh---CCCeEEEEECCeehHhH
Confidence 4567889999888887 99999999877 554221 1 13344444444310 26899988776554444
Q ss_pred H
Q 020234 291 L 291 (329)
Q Consensus 291 r 291 (329)
-
T Consensus 95 ~ 95 (240)
T 3rst_A 95 Y 95 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=69.24 E-value=35 Score=31.58 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=71.9
Q ss_pred ceee-ccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 206 NYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 206 N~lD-lgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
-|++ =-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+... .++||++-.|+
T Consensus 20 TPf~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 89 (318)
T 3qfe_A 20 TFFDSKTDTLDLASQERYYAYLAR-----SGLTGLVILGTNAEAFLLTREE-RAQLIATARKAVG----PDFPIMAGVGA 89 (318)
T ss_dssp CCEETTTTEECHHHHHHHHHHHHT-----TTCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHC----TTSCEEEECCC
T ss_pred CCccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 5566 5688999999999999884 6999999887444222211110 1345555555432 36999999999
Q ss_pred CCHHHHHHHHHHhccccCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gip------~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
++-.++.+..+.+. +.|.. -..|....+.++.++.+-.++.+
T Consensus 90 ~~t~~ai~la~~a~-~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a 137 (318)
T 3qfe_A 90 HSTRQVLEHINDAS-VAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQ 137 (318)
T ss_dssp SSHHHHHHHHHHHH-HHTCSEEEECCCCC---CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhh
Confidence 99999998887653 23632 11111013677888888777754
No 30
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=68.56 E-value=29 Score=31.58 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=71.8
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 80 (291)
T 3tak_A 11 TPMLKDGGVDWKSLEKLVEWHIE-----QGTNSIVAVGTTGEASTLSMEE-HTQVIKEIIRVAN----KRIPIIAGTGAN 80 (291)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCCC
Confidence 34555688899999999999885 6899998877544322211111 1355665555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+..++.+..+.+. +.|. |.+ | ..+.++.++.+-.++.+
T Consensus 81 ~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~ia~a 125 (291)
T 3tak_A 81 STREAIELTKAAK-DLGADAALLVTPYY-N--KPTQEGLYQHYKAIAEA 125 (291)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 9999988877653 3353 321 1 35777888888777654
No 31
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=67.76 E-value=47 Score=30.53 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=73.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+... .++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 87 (309)
T 3fkr_A 18 TTFADTGDLDLASQKRAVDFMID-----AGSDGLCILANFSEQFAITDDE-RDVLTRTILEHVA----GRVPVIVTTSHY 87 (309)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CCCCcCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCc
Confidence 45655688999999999999885 6899999877444322211110 1345555555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecC--CCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYG--PEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g--~~~~~~~av~~~v~~~~~ 327 (329)
+-.++.+..+.+. +.|. |. |+ ...+.++.++.+-.++.+
T Consensus 88 ~t~~ai~la~~A~-~~Gadavlv~~Py--y~~~~~~s~~~l~~~f~~va~a 135 (309)
T 3fkr_A 88 STQVCAARSLRAQ-QLGAAMVMAMPPY--HGATFRVPEAQIFEFYARVSDA 135 (309)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEECCSC--BTTTBCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcCCCEEEEcCCC--CccCCCCCHHHHHHHHHHHHHh
Confidence 9999988887663 3463 32 21 134788888888877754
No 32
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=67.41 E-value=44 Score=30.56 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=71.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 91 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLID-----NGTTAIVVGGTTGESPTLTSEE-KVALYRHVVSVVD----KRVPVIAGTGSN 91 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCceEEeCCCCC
Confidence 44555688999999999999885 5899998876433222111110 1355555555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+-.++.+..+.+ ++.|. |. | ...+.++.++.+-.++.+
T Consensus 92 ~t~~ai~la~~A-~~~Gadavlv~~P~--y-~~~s~~~l~~~f~~va~a 136 (301)
T 1xky_A 92 NTHASIDLTKKA-TEVGVDAVMLVAPY--Y-NKPSQEGMYQHFKAIAES 136 (301)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCC--S-SCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 999998887765 33463 32 2 134778888888777654
No 33
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=67.15 E-value=49 Score=30.25 Aligned_cols=110 Identities=17% Similarity=0.115 Sum_probs=71.4
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 26 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 95 (304)
T 3cpr_A 26 TPFTESGDIDIAAGREVAAYLVD-----KGLDSLVLAGTTGESPTTTAAE-KLELLKAVREEVG----DRAKLIAGVGTN 95 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTTTTSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEecCCCC
Confidence 44555688999999999999885 5899999877433222211110 1355565555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCCce-----eecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGIPL-----EVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gip~-----~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+-+++.+..+.+ ++.|..- -.| ...+.++.++.+-.++.+
T Consensus 96 st~~ai~la~~A-~~~Gadavlv~~P~y-~~~~~~~l~~~f~~ia~a 140 (304)
T 3cpr_A 96 NTRTSVELAEAA-ASAGADGLLVVTPYY-SKPSQEGLLAHFGAIAAA 140 (304)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCS-SCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCC-CCCCHHHHHHHHHHHHHh
Confidence 999998888765 3346321 012 135777788888777654
No 34
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=67.04 E-value=34 Score=31.60 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=73.4
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|+
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 101 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQ-----EGTNAIVAVGTTGESATLDVEE-HIQVIRRVVDQVK----GRIPVIAGTGA 101 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 356666789999999999999885 6899999876443322211110 1355555555432 36999999999
Q ss_pred CCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
++..++.+..+.+. +.|. |.+ | ..+.++.++.+-.++.+
T Consensus 102 ~st~eai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a 147 (314)
T 3qze_A 102 NSTREAVALTEAAK-SGGADACLLVTPYY-N--KPTQEGMYQHFRHIAEA 147 (314)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 99999998887663 3463 322 1 45778888888777754
No 35
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=66.49 E-value=34 Score=32.51 Aligned_cols=108 Identities=9% Similarity=0.057 Sum_probs=72.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 68 vTPF~~dg~ID~~al~~lv~~li~-----~Gv~Gl~v~GTTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 137 (360)
T 4dpp_A 68 KTPYLPDGRFDLEAYDDLVNIQIQ-----NGAEGVIVGGTTGEGQLMSWDE-HIMLIGHTVNCFG----GSIKVIGNTGS 137 (360)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEecccccChhhCCHHH-HHHHHHHHHHHhC----CCCeEEEecCC
Confidence 466777789999999999999885 6899999877444322211111 1345555444432 36899999999
Q ss_pred CCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhh
Q 020234 285 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~ 326 (329)
++-+++.+..+.+. +.|. |. | ...+.++.++.+-.++.
T Consensus 138 ~st~eai~la~~A~-~~Gadavlvv~Py--Y-~k~sq~gl~~hf~~IA~ 182 (360)
T 4dpp_A 138 NSTREAIHATEQGF-AVGMHAALHINPY--Y-GKTSIEGLIAHFQSVLH 182 (360)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCC--S-SCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCCC--C-CCCCHHHHHHHHHHHHH
Confidence 99999988887653 3463 32 2 14577788888776664
No 36
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=66.41 E-value=32 Score=31.77 Aligned_cols=108 Identities=12% Similarity=0.100 Sum_probs=72.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|++
T Consensus 32 TPf~~dg~iD~~~l~~li~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~~ 101 (315)
T 3si9_A 32 TPFDDNGAIDEKAFCNFVEWQIT-----QGINGVSPVGTTGESPTLTHEE-HKRIIELCVEQVA----KRVPVVAGAGSN 101 (315)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCC
Confidence 45555688999999999999885 6899998876433322211110 1345555555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+..++.+..+.+. +.|. |.+ | ..+.++.++.+-.++.+
T Consensus 102 st~~ai~la~~A~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~va~a 146 (315)
T 3si9_A 102 STSEAVELAKHAE-KAGADAVLVVTPYY-N--RPNQRGLYTHFSSIAKA 146 (315)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHc
Confidence 9999988887663 3463 321 1 45778888888777754
No 37
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=66.26 E-value=20 Score=36.36 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=26.0
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISF 38 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~ 38 (329)
..++||++++..+|+.+.+..|+.+.++.+
T Consensus 283 ~~vlVEeyI~g~rei~V~vl~D~~G~vv~l 312 (587)
T 3jrx_A 283 SPIFLMKLAQHARHLEVQILADQYGNAVSL 312 (587)
T ss_dssp CCEEEEECCCSCEEEEEEEEECSSSCEEEE
T ss_pred CCEEEEEecCCCcEEEEEEEEcCCCCEEEE
Confidence 479999999988999999999988776554
No 38
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=66.16 E-value=4.5 Score=38.63 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=22.2
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCC
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLG 33 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~ 33 (329)
..++||++++..+|+.+.+..|+.+
T Consensus 196 ~~~lvEe~i~~~~E~sv~v~~~~~g 220 (403)
T 3k5i_A 196 RPLYAEKWAYFKMELAVIVVKTKDE 220 (403)
T ss_dssp SCEEEEECCCEEEEEEEEEEECSSC
T ss_pred CcEEEecCCCCCeEEEEEEEEcCCC
Confidence 4699999999889999999999876
No 39
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=66.02 E-value=52 Score=29.83 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=71.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ +.++++++++-.+|=...-.... -+.+++...+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~----~~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 83 (293)
T 1f6k_A 13 VSFNEDGTINEKGLRQIIRHNID----KMKVDGLYVGGSTGENFMLSTEE-KKEIFRIAKDEAK----DQIALIAQVGSV 83 (293)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh----hCCCcEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEecCCC
Confidence 34544688999999999999884 37899999876433222111110 1355555555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+-+++.+..+.+. +.|. |. | ...+.++.++.+-.++.+
T Consensus 84 ~t~~ai~la~~a~-~~Gadavlv~~P~--y-~~~~~~~l~~~f~~va~a 128 (293)
T 1f6k_A 84 NLKEAVELGKYAT-ELGYDCLSAVTPF--Y-YKFSFPEIKHYYDTIIAE 128 (293)
T ss_dssp CHHHHHHHHHHHH-HHTCSEEEEECCC--S-SCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 9999988877652 3353 32 2 135778888888777654
No 40
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=65.69 E-value=17 Score=36.37 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=25.9
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISF 38 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~ 38 (329)
..++||++++..+|+.+.+..|+.+.++.+
T Consensus 267 ~~vlVEe~I~g~rei~V~vl~d~~G~vv~l 296 (540)
T 3glk_A 267 SPIFLMKLAQHARHLEVQILADQYGNAVSL 296 (540)
T ss_dssp CCEEEEECCSSEEEEEEEEEECTTSCEEEE
T ss_pred CCEEEEEecCCCcEEEEEEEEcCCCCEEEE
Confidence 479999999988999999999988776554
No 41
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=65.61 E-value=21 Score=33.73 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.0
Q ss_pred cEEEEeecCCCCceEEEEEEEeCC
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRL 32 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~ 32 (329)
..++||++++ .+|+.+++..|+.
T Consensus 217 ~~vlVEe~I~-G~E~~v~vl~~~~ 239 (372)
T 3tqt_A 217 DRLMVEPRIR-GREIECAVLGNGA 239 (372)
T ss_dssp SCEEEEECCC-SEEEEEEEEESSS
T ss_pred CCEEEECCCC-CEEEEEEEEeCCC
Confidence 4699999999 6999999998873
No 42
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=65.56 E-value=29 Score=31.38 Aligned_cols=31 Identities=26% Similarity=0.158 Sum_probs=25.3
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEEe
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 39 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~S 39 (329)
..++|||+++..+|+.+++.-|+..+++...
T Consensus 183 ~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~ 213 (317)
T 4eg0_A 183 KIVIVEKSIEGGGEYTACIAGDLDLPLIKIV 213 (317)
T ss_dssp SEEEEEECCCSSEEEEEEEETTCCCCCEEEE
T ss_pred CeEEEEcCCCCCcEEEEEEECCcccceEEEe
Confidence 5799999999789999999988766654443
No 43
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=64.91 E-value=36 Score=31.43 Aligned_cols=109 Identities=9% Similarity=0.010 Sum_probs=73.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|.
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gi~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 102 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLID-----GGVHAIAPLGSTGEGAYLSDPE-WDEVVDFTLKTVA----HRVPTIVSVSD 102 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 456666788999999999999885 6899999877443322211110 1355666555432 36999999999
Q ss_pred CCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
++.+++.+..+.+. +.|. |.+ | ..+.++.++.+-.++.+
T Consensus 103 ~~t~~ai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a 148 (315)
T 3na8_A 103 LTTAKTVRRAQFAE-SLGAEAVMVLPISY-W--KLNEAEVFQHYRAVGEA 148 (315)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEECCCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 99999988887663 3463 321 2 35778888888777754
No 44
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=64.15 E-value=36 Score=31.20 Aligned_cols=112 Identities=7% Similarity=-0.035 Sum_probs=72.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++=-|..+.+.+.+-++.++ +.++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 23 vTPf~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 92 (307)
T 3s5o_A 23 TTPFTATAEVDYGKLEENLHKLG-----TFPFRGFVVQGSNGEFPFLTSSE-RLEVVSRVRQAMP----KNRLLLAGSGC 92 (307)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHT-----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHTSC----TTSEEEEECCC
T ss_pred EccCCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccccchhhCCHHH-HHHHHHHHHHHcC----CCCcEEEecCC
Confidence 35666678899999999999887 46899999887444222111110 1356666555432 36899999999
Q ss_pred CCHHHHHHHHHHhccccCCce--eecCCC----CCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGIPL--EVYGPE----ATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gip~--~~~g~~----~~~~~av~~~v~~~~~ 327 (329)
++-.++.+..+.+. +.|..- .+-..| .|.++.++.+-.++.+
T Consensus 93 ~~t~~ai~la~~A~-~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a 140 (307)
T 3s5o_A 93 ESTQATVEMTVSMA-QVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL 140 (307)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh
Confidence 99999988877653 346321 010112 3778888888877754
No 45
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=63.90 E-value=29 Score=31.99 Aligned_cols=109 Identities=10% Similarity=0.083 Sum_probs=72.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++..|+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpViaGvg~ 85 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLA-----HHTDGILLAGTTAESPTLTHDE-ELELFAAVQKVVN----GRVPLIAGVGT 85 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHH-----TTCCCEEESSTTTTGGGSCHHH-HHHHHHHHHHHSC----SSSCEEEECCC
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 355655688888999999999885 6899999887444222111110 1456666555532 46999999999
Q ss_pred CCHHHHHHHHHHhccccCC--------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGI--------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gi--------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
++..++.+..+.+.+ .|. |. | ...+.++.++.+-.++.+
T Consensus 86 ~~t~~ai~la~~A~~-~Ga~davlv~~P~--y-~~~s~~~l~~~f~~va~a 132 (311)
T 3h5d_A 86 NDTRDSIEFVKEVAE-FGGFAAGLAIVPY--Y-NKPSQEGMYQHFKAIADA 132 (311)
T ss_dssp SSHHHHHHHHHHHHH-SCCCSEEEEECCC--S-SCCCHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHh-cCCCcEEEEcCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 999999888877643 342 32 2 145778888888777654
No 46
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=63.38 E-value=51 Score=30.16 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=70.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|++
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 90 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQ-----QGIDGLYVGGSTGEAFVQSLSE-REQVLEIVAEEAK----GKIKLIAHVGCV 90 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECeeccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 45555688999999999999885 5899998876433222111110 1355565555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+-.++.+..+.+. +.|. |. | ...|.++.++.+-.++.+
T Consensus 91 ~t~~ai~la~~A~-~~Gadavlv~~P~--y-~~~s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 91 STAESQQLAASAK-RYGFDAVSAVTPF--Y-YPFSFEEHCDHYRAIIDS 135 (303)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEECCC--S-SCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hCCCCEEEecCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 9999988877652 3353 22 2 135778888888777654
No 47
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=62.92 E-value=49 Score=30.01 Aligned_cols=107 Identities=8% Similarity=0.125 Sum_probs=71.1
Q ss_pred eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 207 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 207 ~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+++
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~ 81 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVA-----SGTSAIVSVGTTGESATLNHDE-HADVVMMTLDLAD----GRIPVIAGTGANA 81 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSS
T ss_pred cCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCcc
Confidence 4444588999999999999885 5899998876433222211110 1355565555432 3689999999999
Q ss_pred HHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 287 YQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 287 ~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
-.++.+..+.+ ++.|. |. | ...+.++.++.+-.++.+
T Consensus 82 t~~ai~la~~a-~~~Gadavlv~~P~--y-~~~s~~~l~~~f~~ia~a 125 (292)
T 2ojp_A 82 TAEAISLTQRF-NDSGIVGCLTVTPY--Y-NRPSQEGLYQHFKAIAEH 125 (292)
T ss_dssp HHHHHHHHHHT-TTSSCSEEEEECCC--S-SCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HhcCCCEEEECCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 99999888876 33463 22 2 135778888888777654
No 48
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=61.84 E-value=49 Score=30.79 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=72.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 284 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 284 (329)
--|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 112 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDA-----AEVDSVGILGSTGIYMYLTREE-RRRAIEAAATILR----GRRTLMAGIGA 112 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHH-----HTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEECC
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 355655689999999999999885 5899998877433222111110 1455665555432 36999999999
Q ss_pred CCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 285 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 285 ~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
++-+++.+..+.+. +.|. |. | ...+.++.++.+-.++.+
T Consensus 113 ~st~eai~la~~A~-~~Gadavlv~~P~--Y-~~~s~~~l~~~f~~VA~a 158 (332)
T 2r8w_A 113 LRTDEAVALAKDAE-AAGADALLLAPVS--Y-TPLTQEEAYHHFAAVAGA 158 (332)
T ss_dssp SSHHHHHHHHHHHH-HHTCSEEEECCCC--S-SCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 99999988877653 3352 32 2 135778888888777654
No 49
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=61.46 E-value=24 Score=26.55 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=35.7
Q ss_pred ccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhhh
Q 020234 274 ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 274 ~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
..+|+|+-..|.....-.+.-+++.++ |+..-+.- .++|+|--++..+..+.
T Consensus 50 ngkplvvfvngasqndvnefqneakke-gvsydvlk-stdpeeltqrvreflkt 101 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKE-GVSYDVLK-STDPEELTQRVREFLKT 101 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHH-TCEEEEEE-CCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhc-Ccchhhhc-cCCHHHHHHHHHHHHHh
Confidence 368999999898876666655665444 88766553 67888876666555544
No 50
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=60.15 E-value=47 Score=30.34 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=68.7
Q ss_pred cCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcc-cceEEEEeCCCCHHH
Q 020234 211 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAA-RMHIFVRRGGPNYQT 289 (329)
Q Consensus 211 gG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~-~~pvvvrl~G~~~~~ 289 (329)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... . ++||++-.|+++-.+
T Consensus 22 dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----g~rvpviaGvg~~~t~~ 91 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIE-----NGIDAVVPVGTTGESATLTHEE-HRTCIEIAVETCK----GTKVKVLAGAGSNATHE 91 (301)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCCEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEEECCCSSHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCCeEEEeCCCCCHHH
Confidence 578889999999999885 6899998876443322111110 1355565555432 3 689999999999999
Q ss_pred HHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 290 GLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 290 ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+.+..+.+. +.|. |.+ | ..+.++.++.+-.++.+
T Consensus 92 ai~la~~a~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a 132 (301)
T 3m5v_A 92 AVGLAKFAK-EHGADGILSVAPYY-N--KPTQQGLYEHYKAIAQS 132 (301)
T ss_dssp HHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 988887663 3463 322 1 45778888888777654
No 51
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=59.98 E-value=53 Score=30.72 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=71.4
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+... .++||++-.|++
T Consensus 41 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~~ 110 (343)
T 2v9d_A 41 TIFTADGQLDKPGTAALIDDLIK-----AGVDGLFFLGSGGEFSQLGAEE-RKAIARFAIDHVD----RRVPVLIGTGGT 110 (343)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCSS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 45555688999999999999885 5899998876433222111110 1355555555432 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+-+++.+..+.+. +.|. |. | ...|.++.++.+-.++.+
T Consensus 111 st~eai~la~~A~-~~Gadavlv~~P~--Y-~~~s~~~l~~~f~~VA~a 155 (343)
T 2v9d_A 111 NARETIELSQHAQ-QAGADGIVVINPY--Y-WKVSEANLIRYFEQVADS 155 (343)
T ss_dssp CHHHHHHHHHHHH-HHTCSEEEEECCS--S-SCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 9999988877652 3352 22 1 135778888888777754
No 52
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=58.97 E-value=54 Score=30.09 Aligned_cols=109 Identities=12% Similarity=0.022 Sum_probs=71.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+.. .++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Lt~~E-r~~v~~~~v~~~-----grvpViaGvg~~ 86 (313)
T 3dz1_A 18 TPFHDDGKIDDVSIDRLTDFYAE-----VGCEGVTVLGILGEAPKLDAAE-AEAVATRFIKRA-----KSMQVIVGVSAP 86 (313)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESTGGGTGGGSCHHH-HHHHHHHHHHHC-----TTSEEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEeCccCcChhhCCHHH-HHHHHHHHHHHc-----CCCcEEEecCCC
Confidence 45555688999999999999885 6899999877444222111110 134555554443 269999999999
Q ss_pred CHHHHHHHHHHhccccCCc----eeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGIP----LEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gip----~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+..++.+..+.+. +.|.. +--| ...|.++.++.+-.++.+
T Consensus 87 ~t~~ai~la~~A~-~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a 130 (313)
T 3dz1_A 87 GFAAMRRLARLSM-DAGAAGVMIAPPP-SLRTDEQITTYFRQATEA 130 (313)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEECCCT-TCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCC-CCCCHHHHHHHHHHHHHh
Confidence 9999988877653 33531 0012 245788888888887754
No 53
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=58.95 E-value=65 Score=29.26 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=71.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 82 (294)
T 3b4u_A 13 TPFKTDGTVDIDAMIAHARRCLS-----NGCDSVTLFGTTGEGCSVGSRE-RQAILSSFIAAGI----APSRIVTGVLVD 82 (294)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHTTC----CGGGEEEEECCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCc
Confidence 34444588999999999999885 5899999877433222111110 1456666555532 368999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCC-CCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPE-ATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~-~~~~~av~~~v~~~~~ 327 (329)
+-+++.+..+.+ ++.|. |. | .. .+.++.++.+-.++.+
T Consensus 83 ~t~~ai~la~~A-~~~Gadavlv~~P~--y-~~~~s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 83 SIEDAADQSAEA-LNAGARNILLAPPS--Y-FKNVSDDGLFAWFSAVFSK 128 (294)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCCC--S-SCSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HhcCCCEEEEcCCc--C-CCCCCHHHHHHHHHHHHHh
Confidence 999998888765 33463 32 2 13 4778888888777754
No 54
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=58.88 E-value=25 Score=32.90 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.0
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTIS 37 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii 37 (329)
..++||++++..+|+.+.+..|..+.+..
T Consensus 183 ~~~lvEe~i~g~~E~~v~~~~~~~G~~~~ 211 (389)
T 3q2o_A 183 AECILEKWVPFEKEVSVIVIRSVSGETKV 211 (389)
T ss_dssp SCEEEEECCCCSEEEEEEEEECTTCCEEE
T ss_pred CCEEEEecccCceEEEEEEEEcCCCCEEE
Confidence 46999999998899999999997765433
No 55
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=57.50 E-value=94 Score=26.85 Aligned_cols=118 Identities=7% Similarity=0.034 Sum_probs=68.5
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+... ...+.+... |........+.++.+.+..+++++-+++ ..|..++|+. .
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 195 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDF--GLTEFPIDAVTIETPLEKIRDFGQRLMQ---SSDRPDGIVS-------I 195 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHT--TCEECCCCSCCTTSCHHHHHHHHHHHTT---SSSCCSEEEE-------S
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHc--CCCcchhheeccccchHHHHHHHHHHHh---CCCCCcEEEE-------c
Confidence 56888865433221 123566554 3332222224566777777777777765 2578888873 1
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+ .++| -|+...+....+ +..- ++.+. ..++.+..+.+++++
T Consensus 196 ~d~~A---~g~~~al~~~g-----~~vP~di~vig~d~~~~~~----~~~p----~lttv----~~~~~~~g~~a~~~l 254 (288)
T 3gv0_A 196 SGSST---IALVAGFEAAG-----VKIGEDVDIVSKQSAEFLN----WIKP----QIHTV----NEDIKLAGRELAKAL 254 (288)
T ss_dssp CHHHH---HHHHHHHHTTT-----CCTTTSCEEEEEESSTTHH----HHCT----TSEEE----ECCHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEEecChHHHh----ccCC----CceEE----ecCHHHHHHHHHHHH
Confidence 36777 89999999886 3334 445566654221 1111 44332 567888777777765
No 56
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=57.12 E-value=86 Score=26.97 Aligned_cols=120 Identities=8% Similarity=0.100 Sum_probs=67.6
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+... ...+.+..+ |..+....-+.++.+.+.-+++++-+++ +.|..++|+. .
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 195 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKN--GIKISENHIIAAENSIHGGVDAAKKLMK---LKNTPKALFC-------N 195 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHT--TCBCCGGGEEECCSSHHHHHHHHHHHTT---SSSCCSEEEE-------S
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhheeccCCCHHHHHHHHHHHHc---CCCCCcEEEE-------c
Confidence 46888765433221 123556654 4333221223566777777777776665 3678888873 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+ .++| -|+....++... .+.. .-++.+. ..++.+..+.+++++
T Consensus 196 ~d~~a---~g~~~al~~~g-----~~vP~di~vig~d~~~~~~-----~~~~-~p~lttv----~~~~~~~g~~a~~~l 256 (289)
T 3g85_A 196 SDSIA---LGVISVLNKRQ-----ISIPDDIEIVAIGMNDREY-----TEFS-TPPVTIV----DIPIEEMAGTCISLV 256 (289)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECSCHHH-----HHSS-SSCCEEE----ECCHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHcC-----CCCCCceEEEEeCCCCcch-----hhcc-CCCCeEE----cCCHHHHHHHHHHHH
Confidence 37777 99999999986 3333 345566333332 2211 0134332 567888777777765
No 57
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=56.79 E-value=1.1e+02 Score=27.37 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=65.9
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
++|++++...+... -..+.+..+ |. +....-+-++.+.+.-+++++-+|+ +.|++++|+. .
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~aI~~-------~ 212 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEH--PQ-VHLRQLVYGEWNRERAYRQAQQLLK---RYPKTQLVWS-------A 212 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHC--TT-EEEEEEEECTTCHHHHHHHHHHHHH---HCTTEEEEEE-------S
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHC--CC-eEEEEEeeCCCcHHHHHHHHHHHHH---hCCCcCEEEE-------C
Confidence 57888865433322 133666664 33 2111224566677776666666664 2788887752 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+. ++| .|+...+. ..+.+.+.+- .+.+.. .++.+....+++++
T Consensus 213 ~d~~a---~g~~~al~~~G~-----~vP~di~vvg~d~~--~~~l~~~~~~----~lttv~----~~~~~~G~~av~~l 273 (350)
T 3h75_A 213 NDEMA---LGAMQAARELGR-----KPGTDLLFSGVNSS--PEALQALIDG----KLSVLE----AGHFTLGGWALVAL 273 (350)
T ss_dssp SHHHH---HHHHHHHHHTTC-----CBTTTBEEEEESCC--HHHHHHHHHT----SSCEEE----ECGGGHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcCC-----CCCCCeEEEecCCC--HHHHHHHHcC----CeeEEE----cCchhhHHHHHHHH
Confidence 36777 899999999862 333 34556654 4454455543 454433 23445444444443
No 58
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=56.35 E-value=52 Score=25.50 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHhcccccCC-CCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 020234 215 NEEEVLQYARVVIDCATADP-DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 293 (329)
Q Consensus 215 ~~e~~~~a~~ill~~~~~~~-~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~ 293 (329)
+.+.+.+.+.-++. .+| ..+.++++ +++++..|..+. ..+.+..++... ....++ +.|.+ ..-+++
T Consensus 29 ~a~~~~~~l~~~~~---~~~~~~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~ 95 (130)
T 2kln_A 29 NAEDFRRRALTVVD---QDPGQVEWFVLN-AESNVEVDLTAL--DALDQLRTELLR----RGIVFA--MARVK-QDLRES 95 (130)
T ss_dssp THHHHHHHHHHHTT---SSSSCCEEEEEE-CSCCSSSBCSTT--THHHHHHHHHHT----TTEEEE--EECCS-SHHHHH
T ss_pred hHHHHHHHHHHHHh---cCCCCceEEEEE-CCCCChhhHHHH--HHHHHHHHHHHH----CCCEEE--EEcCC-HHHHHH
Confidence 45556665554443 122 45555444 566666665543 666666666542 234444 33433 245667
Q ss_pred HHHhccccCCc--e---eecCCCCCHHHHHHHH
Q 020234 294 MRALGEELGIP--L---EVYGPEATMTGICKQA 321 (329)
Q Consensus 294 l~~~~~~~gip--~---~~~g~~~~~~~av~~~ 321 (329)
|+.+ |+. + .+ +.|.++|+..+
T Consensus 96 l~~~----gl~~~~~~~~i---~~t~~~Al~~~ 121 (130)
T 2kln_A 96 LRAA----SLLDKIGEDHI---FMTLPTAVQAF 121 (130)
T ss_dssp HHHC----TTHHHHCTTEE---ESCHHHHHHHH
T ss_pred HHHc----CChhhcCccee---ECCHHHHHHHH
Confidence 7766 652 1 23 57999998765
No 59
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=55.58 E-value=38 Score=31.67 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.6
Q ss_pred cEEEEeecCCCCceEEEEEEEeCC
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRL 32 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~ 32 (329)
..++|||+++..+|+.+++..|+.
T Consensus 211 ~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 211 YKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp SCEEEEECCCCSCEEEEEEEESSS
T ss_pred CcEEEEcCCCCCceEEEEEEcCCC
Confidence 479999999966899999998764
No 60
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=55.55 E-value=27 Score=35.81 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=26.3
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEEe
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 39 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~S 39 (329)
..++||++++..+|+.+.+..|+.+.++.+.
T Consensus 221 ~~vlvEeyI~g~reiev~v~~d~~G~vv~l~ 251 (675)
T 3u9t_A 221 ARMLVEKYLLKPRHVEIQVFADRHGHCLYLN 251 (675)
T ss_dssp CCCBCCBCCSSCBCEEEEEEECSSSCEEEEE
T ss_pred CcEEEEeecCCCcEEEEEEEEcCCCCEEEEe
Confidence 4689999999889999999999887765553
No 61
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=55.37 E-value=21 Score=34.04 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=24.9
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISF 38 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~ 38 (329)
..++|||+++..+|+.+++..|+.+.++.+
T Consensus 194 ~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~ 223 (451)
T 1ulz_A 194 GDLLLEKFIENPKHIEYQVLGDKHGNVIHL 223 (451)
T ss_dssp CCEEEEECCCSCEEEEEEEEECTTSCEEEE
T ss_pred CeEEEEEcccCCeEEEEEEEEcCCCCEEEE
Confidence 479999999987899999999987765433
No 62
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=52.40 E-value=79 Score=28.62 Aligned_cols=106 Identities=9% Similarity=0.068 Sum_probs=68.6
Q ss_pred eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 207 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 207 ~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
|++=. ..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+++
T Consensus 14 Pf~~d-~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~~~ 82 (292)
T 3daq_A 14 PFTNN-KVNLEALKAHVNFLLE-----NNAQAIIVNGTTAESPTLTTDE-KELILKTVIDLVD----KRVPVIAGTGTND 82 (292)
T ss_dssp CEETT-EECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSC
T ss_pred CcCCC-CcCHHHHHHHHHHHHH-----cCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCccc
Confidence 44434 6778888888888884 6899999887444322211110 1355565555432 3699999999999
Q ss_pred HHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 287 YQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 287 ~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
-+++.+..+.+. +.|. |. .| ..+.++.++.+-.++.+
T Consensus 83 t~~ai~la~~a~-~~Gadavlv~~P~-y~--~~~~~~l~~~f~~ia~a 126 (292)
T 3daq_A 83 TEKSIQASIQAK-ALGADAIMLITPY-YN--KTNQRGLVKHFEAIADA 126 (292)
T ss_dssp HHHHHHHHHHHH-HHTCSEEEEECCC-SS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCC-CC--CCCHHHHHHHHHHHHHh
Confidence 999988887653 2363 32 12 45778888888777654
No 63
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=52.25 E-value=26 Score=32.15 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=71.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+... .++||++-.|++
T Consensus 14 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 83 (300)
T 3eb2_A 14 SPVDAEGRVRADVMGRLCDDLIQ-----AGVHGLTPLGSTGEFAYLGTAQ-REAVVRATIEAAQ----RRVPVVAGVAST 83 (300)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSCBBTTSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCBEEEEEES
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCC
Confidence 45666688999999999999885 6899998776443221111110 1345555555432 368999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+..++.+..+.+. +.|. |. .| ..+.++.++.+-.++.+
T Consensus 84 ~t~~ai~la~~a~-~~Gadavlv~~P~-y~--~~~~~~l~~~f~~va~a 128 (300)
T 3eb2_A 84 SVADAVAQAKLYE-KLGADGILAILEA-YF--PLKDAQIESYFRAIADA 128 (300)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEEECC-SS--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEcCCC-CC--CCCHHHHHHHHHHHHHH
Confidence 9999988887653 2353 22 12 35778888888777654
No 64
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=52.23 E-value=10 Score=39.14 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=19.2
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEEe
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 39 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~S 39 (329)
..++||++++..+|+.+.+..|+.+.++.+.
T Consensus 195 ~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 195 DRIFIEKFVTQPRHIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp --------CCSCEEEEEEEECCSSSCCEEEE
T ss_pred CcEEEEeccCCCcEEEEEEEEeCCCCEEEEe
Confidence 4799999999889999999999887765554
No 65
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=52.16 E-value=57 Score=29.55 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=66.7
Q ss_pred eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 207 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 207 ~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
|++=-| .+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|+++
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pvi~Gvg~~~ 81 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIK-----SKTDAIIVCGTTGEATTMTETE-RKETIKFVIDKVN----KRIPVIAGTGSNN 81 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSS
T ss_pred CcCCCC-cCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCccc
Confidence 444446 899999999999885 5899998876433222111110 1355555555432 3699999999999
Q ss_pred HHHHHHHHHHhccccCCce-----eecCCCCCHHHHHHHHHHHhhh
Q 020234 287 YQTGLAKMRALGEELGIPL-----EVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 287 ~~~ar~~l~~~~~~~gip~-----~~~g~~~~~~~av~~~v~~~~~ 327 (329)
-+++.+..+.+ ++.|..- -.| ...|.++.++.+-.++.+
T Consensus 82 t~~ai~la~~a-~~~Gadavlv~~P~y-~~~s~~~l~~~f~~ia~a 125 (291)
T 3a5f_A 82 TAASIAMSKWA-ESIGVDGLLVITPYY-NKTTQKGLVKHFKAVSDA 125 (291)
T ss_dssp HHHHHHHHHHH-HHTTCSEEEEECCCS-SCCCHHHHHHHC-CTGGG
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHh
Confidence 99998887765 3346321 012 134777777776665543
No 66
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=51.68 E-value=73 Score=29.23 Aligned_cols=108 Identities=14% Similarity=0.009 Sum_probs=70.8
Q ss_pred Cceeec-cCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 020234 205 GNYAEY-SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 283 (329)
Q Consensus 205 aN~lDl-gG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~ 283 (329)
--|++= -|..+.+.+.+-++.++ +.++++++++-.+|=...-.... -+.++++..+... .++||++-.|
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~v~~~~----grvpViaGvg 89 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIV-----DNGIDVIVPCGNTSEFYALSLEE-AKEEVRRTVEYVH----GRALVVAGIG 89 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHH-----TTTCCEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eCCccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEEeC
Confidence 356665 68899999999999988 47899998776433322211110 1345555555432 3689999987
Q ss_pred CCCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 284 GPNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 284 G~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
. +-.++.+..+.+. +.|. |. | ...|.++.++.+-.++.+
T Consensus 90 ~-~t~~ai~la~~A~-~~Gadavlv~~P~--y-~~~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 90 Y-ATSTAIELGNAAK-AAGADAVMIHMPI--H-PYVTAGGVYAYFRDIIEA 135 (316)
T ss_dssp S-SHHHHHHHHHHHH-HHTCSEEEECCCC--C-SCCCHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHH-hcCCCEEEEcCCC--C-CCCCHHHHHHHHHHHHHh
Confidence 5 8888888776653 3353 43 2 245888888888877754
No 67
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=51.51 E-value=45 Score=34.91 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=59.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC-
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG- 284 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G- 284 (329)
.-+|+|.+.+++.+.+++ . ..+++.|.+-.. .+...+.. ..++++|++.+. ..++| -.||
T Consensus 634 eVi~lG~~v~~eeiv~aA---~-----e~~adiVglSsl--~~~~~~~~---~~vi~~Lr~~G~----~dv~V--ivGG~ 694 (762)
T 2xij_A 634 DVDIGPLFQTPREVAQQA---V-----DADVHAVGVSTL--AAGHKTLV---PELIKELNSLGR----PDILV--MCGGV 694 (762)
T ss_dssp EEEECCTTCCHHHHHHHH---H-----HTTCSEEEEEEC--SSCHHHHH---HHHHHHHHHTTC----TTSEE--EEEES
T ss_pred EEeeCCCCCCHHHHHHHH---H-----HcCCCEEEEeee--cHHHHHHH---HHHHHHHHhcCC----CCCEE--EEeCC
Confidence 347889999999877763 2 234555555432 22233334 788888988762 24444 4455
Q ss_pred -CCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 285 -PNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 285 -~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
+..+ ...+++. |+.- +|++-++..++++.++++.+
T Consensus 695 ~P~~d--~~~l~~~----GaD~-~f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 695 IPPQD--YEFLFEV----GVSN-VFGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp CCGGG--HHHHHHH----TCCE-EECTTCCHHHHHHHHHHHHH
T ss_pred CCccc--HHHHHhC----CCCE-EeCCCCCHHHHHHHHHHHHH
Confidence 3321 2345666 8864 45556799999999988774
No 68
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=50.87 E-value=59 Score=29.04 Aligned_cols=118 Identities=11% Similarity=0.083 Sum_probs=69.5
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+... -..+.+..+ |.++....-..++.+.+.-+++++-+++ +.|+.++|+. .
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 249 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA-------S 249 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHHH---TTCCCSEEEE-------S
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHC--CCCCCcceEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------C
Confidence 57998865433221 134667664 4443322334567778877777777775 2678888873 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| -|+++++++.+ .++| -|+...+.... +.. .-++.+. ..++.+..+.+++++
T Consensus 250 nd~~A---~g~~~al~~~G-----~~vP~di~vvg~D~~~~~-------~~~-~p~lttv----~~~~~~~g~~a~~~l 308 (338)
T 3dbi_A 250 NDDMA---IGAMKALHERG-----VAVPEQVSVIGFDDIAIA-------PYT-VPALSSV----KIPVTEMIQEIIGRL 308 (338)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCTTG-------GGS-SSCCEEE----ECCHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC-----CCCCCCeEEEEECChHHH-------hhc-CCcceEE----ecCHHHHHHHHHHHH
Confidence 37777 89999999986 3444 34556665311 110 0134332 457777777777655
No 69
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=50.19 E-value=96 Score=27.46 Aligned_cols=86 Identities=14% Similarity=0.024 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHH
Q 020234 212 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL 291 (329)
Q Consensus 212 G~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar 291 (329)
++-+.+.-+++++-+|+ +.|++++|+. .++.+| .|+++++++.+ . .++ .|+...+ ..+..
T Consensus 169 ~~~~~~~~~~~~~~ll~---~~~~~~aI~~-------~nD~~A---~g~~~al~~~G-~---~dv-~VvG~D~--~~~~~ 228 (316)
T 1tjy_A 169 GYNDATKSLQTAEGIIK---AYPDLDAIIA-------PDANAL---PAAAQAAENLK-R---NNL-AIVGFST--PNVMR 228 (316)
T ss_dssp CTTCHHHHHHHHHHHHH---HCSSCCEEEE-------CSTTHH---HHHHHHHHHTT-C---CSC-EEEEBCC--HHHHH
T ss_pred CCCCHHHHHHHHHHHHH---hCCCCCEEEE-------CCCccH---HHHHHHHHHcC-C---CCE-EEEEeCC--CHHHH
Confidence 45567766666665554 2678888763 236677 89999999875 2 233 3444444 34555
Q ss_pred HHHHHhccccC-CceeecCCCCCHHHHHHHHHHHh
Q 020234 292 AKMRALGEELG-IPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 292 ~~l~~~~~~~g-ip~~~~g~~~~~~~av~~~v~~~ 325 (329)
+.+.. | +.+.+ ..++.+..+.+++++
T Consensus 229 ~~i~~-----g~l~ttv---~~~~~~~g~~a~~~l 255 (316)
T 1tjy_A 229 PYVQR-----GTVKEFG---LWDVVQQGKISVYVA 255 (316)
T ss_dssp HHHHH-----TSCSEEE---ECCHHHHHHHHHHHH
T ss_pred HHHHC-----CCccEEE---ecCHHHHHHHHHHHH
Confidence 66665 5 53343 457777666666654
No 70
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=50.11 E-value=30 Score=29.94 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=38.2
Q ss_pred eeccCCCCHHH---HHHHHHHHhcccccCCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEe
Q 020234 208 AEYSGAPNEEE---VLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR 282 (329)
Q Consensus 208 lDlgG~a~~e~---~~~a~~ill~~~~~~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl 282 (329)
+-++|..++.. +.+.++.+-+ +++++.|++.| |||-.. -+ ..|.++++.. ++||++..
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~~~~----~~~~k~I~l~InSPGG~v~---a~---~~I~~~i~~~-------~~pV~~~v 92 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILLLAA----EDASKDISLYINSPGGSIS---AG---MAIYDTMVLA-------PCDIATYA 92 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHH----HCSSSCEEEEEEECCBCHH---HH---HHHHHHHHHC-------SSCEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHh----CCCCCCEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEE
Confidence 45556655543 4444444443 56677665555 888432 22 7787887775 46787776
Q ss_pred CCCCHHHH
Q 020234 283 GGPNYQTG 290 (329)
Q Consensus 283 ~G~~~~~a 290 (329)
+|.-+..|
T Consensus 93 ~g~AaS~g 100 (208)
T 2cby_A 93 MGMAASMG 100 (208)
T ss_dssp EEEEETHH
T ss_pred CcEeHHHH
Confidence 66544333
No 71
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=49.76 E-value=74 Score=29.21 Aligned_cols=108 Identities=10% Similarity=-0.034 Sum_probs=70.5
Q ss_pred Ccee-eccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 020234 205 GNYA-EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 283 (329)
Q Consensus 205 aN~l-DlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~ 283 (329)
--|+ +=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg 89 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQ-----NGIEVIVPNGNTGEFYALTIEE-AKQVATRVTELVN----GRATVVAGIG 89 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHH-----TTCSEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eccccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEECcccCChhhCCHHH-HHHHHHHHHHHhC----CCCeEEecCC
Confidence 3555 55689999999999999885 5899988765333221111110 1355565555432 3699999999
Q ss_pred CCCHHHHHHHHHHhccccCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 020234 284 GPNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 284 G~~~~~ar~~l~~~~~~~gi-------p~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+ +-+++.+..+.+ ++.|. |. .| ..+.++.++.+-.++.+
T Consensus 90 ~-st~~ai~la~~A-~~~Gadavlv~~P~-y~--~~s~~~l~~~f~~va~a 135 (314)
T 3d0c_A 90 Y-SVDTAIELGKSA-IDSGADCVMIHQPV-HP--YITDAGAVEYYRNIIEA 135 (314)
T ss_dssp S-SHHHHHHHHHHH-HHTTCSEEEECCCC-CS--CCCHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHH-HHcCCCEEEECCCC-CC--CCCHHHHHHHHHHHHHh
Confidence 9 999998887765 33463 32 11 35778888888777754
No 72
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=49.75 E-value=86 Score=24.36 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=54.4
Q ss_pred eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHH-HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 208 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTD-VATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 208 lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~-vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+.+-|.-+.++..+..+.+++.+. ..+.+.+++.+ +|+.-.|. .+ +.+....+.... .... +.+.|-+
T Consensus 16 v~l~G~lD~~~a~~l~~~ll~~i~-~~~~~~vIlDl-sgV~~iDs~g~---~~L~~~~~~~~l----~G~~--~~l~Gi~ 84 (123)
T 3zxn_A 16 VAIEETLHDQSVIQFKEELLHNIT-GVAGKGLVIDI-SALEVVDEFVT---RVLIEISRLAEL----LGLP--FVLTGIK 84 (123)
T ss_dssp EECCCCC-CHHHHHHHHHHHHHHT-SSCCSEEEEEC-TTCSSCCHHHH---HHHHHHHHHHHH----HTCC--EEEECCC
T ss_pred EEEeEeeCHHHHHHHHHHHHHHHH-hcCCCEEEEEc-CCCCcccHHHH---HHHHHHHHHHHH----CCCE--EEEEcCC
Confidence 345666666666665555555332 34566666665 44444443 33 555555554432 1222 3445555
Q ss_pred HHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 287 YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 287 ~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
.+ -.+.|..+ |+....+.++.|.++|++.+-+.++
T Consensus 85 p~-va~~l~~~----G~~l~~i~~~~~l~~Al~~l~~~~~ 119 (123)
T 3zxn_A 85 PA-VAITLTEM----GLDLRGMATALNLQKGLDKLKNLAR 119 (123)
T ss_dssp HH-HHHHHHHT----TCCSTTSEEESSHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHh----CCCccceEEECCHHHHHHHHHHhhh
Confidence 34 44556665 5531111127899999998877664
No 73
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=49.29 E-value=58 Score=29.52 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=66.7
Q ss_pred cCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 020234 211 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 290 (329)
Q Consensus 211 gG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~a 290 (329)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+++-+++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~t~~a 84 (292)
T 2vc6_A 15 DDRIDEVALHDLVEWQIE-----EGSFGLVPCGTTGESPTLSKSE-HEQVVEITIKTAN----GRVPVIAGAGSNSTAEA 84 (292)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEETTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCccHHHH
Confidence 477888999999999885 5899988766333222111110 1355565555432 36899999999999999
Q ss_pred HHHHHHhccccCCce-----eecCCCCCHHHHHHHHHHHhhh
Q 020234 291 LAKMRALGEELGIPL-----EVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 291 r~~l~~~~~~~gip~-----~~~g~~~~~~~av~~~v~~~~~ 327 (329)
.+..+.+ ++.|..- -.| ...|.++.++.+-.++.+
T Consensus 85 i~la~~A-~~~Gadavlv~~P~y-~~~s~~~l~~~f~~ia~a 124 (292)
T 2vc6_A 85 IAFVRHA-QNAGADGVLIVSPYY-NKPTQEGIYQHFKAIDAA 124 (292)
T ss_dssp HHHHHHH-HHTTCSEEEEECCCS-SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHh
Confidence 8887765 3346321 011 134778888887777654
No 74
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=48.94 E-value=32 Score=32.73 Aligned_cols=29 Identities=14% Similarity=0.309 Sum_probs=24.4
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTIS 37 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii 37 (329)
..++|||+++..+|+.+.+..|..+.++.
T Consensus 196 ~~~lvEe~i~g~~e~~v~~~~~~~G~~~~ 224 (449)
T 2w70_A 196 DMVYMEKYLENPRHVEIQVLADGQGNAIY 224 (449)
T ss_dssp CCEEEEECCSSCEEEEEEEEECTTSCEEE
T ss_pred CcEEEEeccCCCeEEEEEEEEcCCCCEEE
Confidence 47999999998799999999998776543
No 75
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=48.81 E-value=16 Score=37.02 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHhcccccCCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 020234 212 GAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 289 (329)
Q Consensus 212 G~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ 289 (329)
+....+.+.++++-+.+ |+++++|++-+ +||-.... +.+-+.++.... .++||++.++|.-..-
T Consensus 320 ~~~~~~~l~~~L~~a~~----d~~vkaVVL~i~spGG~~~~~------~~i~~~i~~l~~----~~kPVia~v~g~Aasg 385 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS------EVIRAELAAARA----AGKPVVVSMGGMAASG 385 (593)
T ss_dssp TSEEHHHHHHHHHHHHH----CTTEEEEEEEEEEEEECHHHH------HHHHHHHHHHHH----TTCCEEEEEEEEEETH
T ss_pred chhHHHHHHHHHHHHHh----CCCCCEEEEEecCCCCCHHHH------HHHHHHHHHHHh----CCCCEEEEECCChHHH
Confidence 34567888888888877 99999999987 66643221 223333444321 3689998887754444
Q ss_pred H
Q 020234 290 G 290 (329)
Q Consensus 290 a 290 (329)
|
T Consensus 386 G 386 (593)
T 3bf0_A 386 G 386 (593)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=48.48 E-value=27 Score=33.40 Aligned_cols=28 Identities=18% Similarity=0.295 Sum_probs=24.2
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTI 36 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~i 36 (329)
..++|||+++..+|+.+.+..|+.+.++
T Consensus 200 ~~~lvEe~i~g~~e~~v~v~~~~~G~~~ 227 (461)
T 2dzd_A 200 DEVYVEKLIENPKHIEVQILGDYEGNIV 227 (461)
T ss_dssp CCEEEEECCCSCEEEEEEEEECTTCCEE
T ss_pred CcEEEEECCCCCeEEEEEEEEcCCCCEE
Confidence 5799999999888999999999877664
No 77
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=48.35 E-value=26 Score=33.42 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=24.9
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISF 38 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~ 38 (329)
..++|||+++..+|+.+.+..|+.+.++.+
T Consensus 194 ~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~ 223 (451)
T 2vpq_A 194 GGLYMEKFIENFRHIEIQIVGDSYGNVIHL 223 (451)
T ss_dssp CCEEEEECCCSEEEEEEEEEECTTSCEEEE
T ss_pred CcEEEEEecCCCeEEEEEEEEcCCCCEEEE
Confidence 579999999987899999999987765443
No 78
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=48.19 E-value=61 Score=29.52 Aligned_cols=105 Identities=10% Similarity=0.106 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 020234 211 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 290 (329)
Q Consensus 211 gG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~a 290 (329)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|+++-+++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~~t~~a 84 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIK-----HGAHGLVPVGTTGESPTLTEEE-HKRVVALVAEQAQ----GRVPVIAGAGSNNPVEA 84 (297)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEccCCCCHHHH
Confidence 477888999999999885 5899998776333222111110 1355555555432 36999999999999999
Q ss_pred HHHHHHhccccCCce-----eecCCCCCHHHHHHHHHHHhhh
Q 020234 291 LAKMRALGEELGIPL-----EVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 291 r~~l~~~~~~~gip~-----~~~g~~~~~~~av~~~v~~~~~ 327 (329)
.+..+.+. +.|..- -.| ...|.++.++.+-.++.+
T Consensus 85 i~la~~A~-~~Gadavlv~~P~y-~~~s~~~l~~~f~~va~a 124 (297)
T 2rfg_A 85 VRYAQHAQ-QAGADAVLCVAGYY-NRPSQEGLYQHFKMVHDA 124 (297)
T ss_dssp HHHHHHHH-HHTCSEEEECCCTT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHh
Confidence 88877652 335221 012 135778888888777654
No 79
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=48.10 E-value=26 Score=29.87 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcccccCCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 020234 216 EEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 290 (329)
Q Consensus 216 ~e~~~~a~~ill~~~~~~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~a 290 (329)
.+.+.+.++.+-+ +++.+.|++.+ |||-.. -+ ..|.++++.. +.||++..+|.-+..|
T Consensus 40 a~~i~~~L~~l~~----~~~~~~I~l~InSPGG~v~---a~---~~I~~~i~~~-------~~pV~~~v~g~AaS~g 99 (193)
T 1yg6_A 40 ANLIVAQMLFLEA----ENPEKDIYLYINSPGGVIT---AG---MSIYDTMQFI-------KPDVSTICMGQAASMG 99 (193)
T ss_dssp HHHHHHHHHHHHH----HCSSSCEEEEEEECCBCHH---HH---HHHHHHHHHS-------SSCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHh----cCCCCCEEEEEECcCCCHH---HH---HHHHHHHHhc-------CCCEEEEEeeeHHHHH
Confidence 3445555554443 45566665554 888542 22 7777887775 4678877666543333
No 80
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=47.95 E-value=71 Score=27.83 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=55.1
Q ss_pred CcEEEEEcCCcHHHH------HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam~------t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+.... ..+.+..+ |-.+..-.-..++.+.+.-+++++-+|+ +.|..++|+. .
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 194 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEA--GLMPLAGYLQKADPTRPGGYLAASRLLA---LEVPPTAIIT-------D 194 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTT--TCCCCTTCEEEECSSHHHHHHHHHHHHH---SSSCCSEEEE-------S
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHC--CCCCChhHeecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 568888655433221 23666664 4443222223456677777777776665 2578888863 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCC
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPN 286 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~ 286 (329)
++.+| .|+++++++.+ .++| -|+...+..
T Consensus 195 nd~~A---~g~~~al~~~G-----~~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 195 CNMLG---DGVASALDKAG-----LLGGEGISLIAYDGLP 226 (294)
T ss_dssp SHHHH---HHHHHHHHHTT-----CSSTTSCEEEEETCSC
T ss_pred CHHHH---HHHHHHHHHcC-----CCCCCceEEEeecCcc
Confidence 37777 99999999986 3444 355566654
No 81
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=46.48 E-value=1.4e+02 Score=25.47 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=68.5
Q ss_pred CcEEEEEcCCcH----HHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchH
Q 020234 176 GRIWTMVAGGGA----SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFT 251 (329)
Q Consensus 176 g~I~ii~NG~Gl----am~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~ 251 (329)
.+|++++...+. ---..+.+..+ |..+...+ ..++.+.+.-+++++-+|+ +.|++++|+. .++
T Consensus 119 ~~i~~i~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~d 185 (280)
T 3gyb_A 119 THIAHLRVGSGAGLRRFESFEATMRAH--GLEPLSND-YLGPAVEHAGYTETLALLK---EHPEVTAIFS-------SND 185 (280)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHHHT--TCCCEECC-CCSCCCHHHHHHHHHHHHH---HCTTCCEEEE-------SSH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHHHHc--CcCCCccc-ccCCCCHHHHHHHHHHHHh---CCCCCCEEEE-------CCh
Confidence 579988665543 01122556664 44332223 6677777777777776665 2688888863 136
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 252 DVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 252 ~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
..| .|+++++++.+ .++| .|+...+.. .+ +.+. -++.+. ..++.+..+.+++++
T Consensus 186 ~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~--~~-~~~~-----p~lttv----~~~~~~~g~~av~~l 242 (280)
T 3gyb_A 186 ITA---IGALGAARELG-----LRVPEDLSIIGYDNTP--LA-QTRL-----INLTTI----DDNSIGVGYNAALLL 242 (280)
T ss_dssp HHH---HHHHHHHHHHT-----CCTTTTCEEEEESCCH--HH-HSTT-----TCCCEE----ECCHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHcC-----CCCCCeeEEEEECCch--Hh-hccC-----CCceEE----ecCHHHHHHHHHHHH
Confidence 677 89999999986 2333 355566643 11 1111 144332 457777777776655
No 82
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=45.81 E-value=1.4e+02 Score=25.31 Aligned_cols=118 Identities=10% Similarity=0.071 Sum_probs=67.5
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+... ...+.+..+ |.++....-..++.+.+.-+++++-+++ +.|+.++|+. .
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 188 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIEN--YLTPDHFLTTHEAPSSQLGAEGLAKLLL---RDSSLNALVC-------S 188 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHT--TCCCCCEEECSSCCCHHHHHHHHHHHHT---TCTTCCEEEE-------S
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHc--CCCCCccEEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------c
Confidence 57998875433221 123666664 4443322223456677777777766665 2577888763 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+ .++| .|+...+.. .+ +.+. -.+.+ + ..++.+..+.+++++
T Consensus 189 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~--~~-~~~~-----p~ltt-v---~~~~~~~g~~a~~~l 247 (275)
T 3d8u_A 189 HEEIA---IGALFECHRRV-----LKVPTDIAIICLEGSS--MG-EHAY-----PSLTS-A---EFDYERMGTKAAEKL 247 (275)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEESSCCH--HH-HTSS-----SCCEE-E---ECCHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEecCCch--Hh-hhcC-----CCcce-e---cCCHHHHHHHHHHHH
Confidence 36777 99999999986 3444 455666653 22 1111 13433 2 457777777777655
No 83
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=45.62 E-value=1.3e+02 Score=27.11 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=68.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+.. .. |++-.|++
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~-----~g--vi~Gvg~~ 74 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITS-----KGVDVVFVAGTTGLGPALSLQE-KMELTDAATSAA-----RR--VIVQVASL 74 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHHHHC-----SS--EEEECCCS
T ss_pred cCcC-CCccCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh-----CC--EEEeeCCC
Confidence 4667 788999999999999885 5899998876433222111110 145666665553 23 78889999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCC-CCHHHHHHHHHHHhhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPE-ATMTGICKQAIDCIMS 327 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~-~~~~~av~~~v~~~~~ 327 (329)
+-+++.+..+.+ ++.|. |. | .. .+.++.++.+-.++.+
T Consensus 75 ~t~~ai~la~~A-~~~Gadavlv~~P~--y-~~~~s~~~l~~~f~~va~a 120 (286)
T 2r91_A 75 NADEAIALAKYA-ESRGAEAVASLPPY--Y-FPRLSERQIAKYFRDLCSA 120 (286)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCSC--S-STTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCc--C-CCCCCHHHHHHHHHHHHHh
Confidence 999998887765 33463 32 2 13 4778888888777654
No 84
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=45.20 E-value=1.5e+02 Score=26.61 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=63.2
Q ss_pred HHHHHhccCCCCCCCc-eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhh
Q 020234 191 YADTVGDLGYASELGN-YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 269 (329)
Q Consensus 191 t~D~l~~~g~gg~paN-~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~ 269 (329)
..+.+..+ |-.+.. ++-..++.+.+.-+++++-+|+ ..|..++||. .++.+| -|+++++++.+
T Consensus 228 f~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~nD~~A---~g~~~al~~~G- 291 (366)
T 3h5t_A 228 AMEVFIEA--GIDPGTVPIMECWINNRQHNFEVAKELLE---THPDLTAVLC-------TVDALA---FGVLEYLKSVG- 291 (366)
T ss_dssp HHHHHHHH--TCCGGGSCEEEESSCCHHHHHHHHHHHHH---HCTTCCEEEE-------SSHHHH---HHHHHHHHHTT-
T ss_pred HHHHHHHC--CCCCCcceEEEcCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------CCcHHH---HHHHHHHHHcC-
Confidence 44777775 444322 3434567777777777777765 2678888873 237777 89999999986
Q ss_pred hhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 270 KLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 270 ~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++| -|+...+.. .+. .. ++.+. ..++.+..+.+++++
T Consensus 292 ----~~vP~disvigfD~~~--~~~----~~----~lttv----~q~~~~~G~~Av~~L 332 (366)
T 3h5t_A 292 ----KSAPADLSLTGFDGTH--MAL----AR----DLTTV----IQPNKLKGFKAGETL 332 (366)
T ss_dssp ----CCTTTTCEEEEEECCH--HHH----HT----TCCEE----ECCHHHHHHHHHHHH
T ss_pred ----CCCCCceEEEEECCCh--hhc----CC----CccEE----EeCHHHHHHHHHHHH
Confidence 3444 355566653 222 22 55442 567888777777665
No 85
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=44.80 E-value=56 Score=35.33 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=25.9
Q ss_pred ecEEEEeecCCCCceEEEEEEEeCCCCeEEE
Q 020234 8 ITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 38 (329)
Q Consensus 8 v~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~ 38 (329)
...++||++++..+|+.+.+..|+.+.++.+
T Consensus 201 ~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~ 231 (1073)
T 1a9x_A 201 TKELLIDESLIGWKEYEMEVVRDKNDNCIIV 231 (1073)
T ss_dssp TSCEEEEECCTTSEEEEEEEEECTTCCEEEE
T ss_pred CCcEEEEEccCCCeEEEEEEEEeCCCCEEEE
Confidence 3579999999988999999999988765433
No 86
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=44.48 E-value=1.5e+02 Score=25.34 Aligned_cols=118 Identities=11% Similarity=-0.034 Sum_probs=68.2
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++...+... ...+.+..+ |.......-..++.+.+..+++++-+|+ +.|+.++|+. .
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 199 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLA--DIVLPKEYILHFDFSRESGQQAVEELMG---LQQPPTAIMA-------T 199 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHc--CCCCChheEEecCCCHHHHHHHHHHHHc---CCCCCcEEEE-------c
Confidence 57998875544322 133666664 4433222223466677777777776665 2678888873 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+ .++| .|+...+.. .+. .+. -++.+. ..++.+..+.+++++
T Consensus 200 ~d~~a---~g~~~al~~~g-----~~vP~di~vig~d~~~--~~~-~~~-----p~lttv----~~~~~~~g~~av~~l 258 (292)
T 3k4h_A 200 DDLIG---LGVLSALSKKG-----FVVPKDVSIVSFNNAL--LSE-IAS-----PPLSTV----DVNIYQLGYEAAKAL 258 (292)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCH--HHH-HSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHhC-----CCCCCeEEEEEecCcc--hhh-ccC-----CCceEE----ecCHHHHHHHHHHHH
Confidence 36777 89999999986 3333 355566642 111 111 134332 457777777777665
No 87
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=43.92 E-value=78 Score=27.88 Aligned_cols=94 Identities=7% Similarity=0.050 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhccc-ceEEEEeCCCCHHHH
Q 020234 212 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAAR-MHIFVRRGGPNYQTG 290 (329)
Q Consensus 212 G~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~-~pvvvrl~G~~~~~a 290 (329)
++.+.+.-+++++-+|+.-..+|++++|+ ..++.+| .|+++++++.+.. .+.+ +.+++...+ ...+
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------~~nd~~A---~g~~~al~~~g~~-vP~d~i~vv~g~D~--~~~~ 247 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVL-------SPYDGLS---IGIISSLKGVGYG-TKDQPLPVVSGQDA--EVPS 247 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEE-------CSSHHHH---HHHHHHHHHTTCS-SSSSCCCEECCSSC--CHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEE-------ECCCchH---HHHHHHHHHcCCC-CCCCceEEEEecCC--CHHH
Confidence 45566666666666665110137888876 2237777 9999999998621 0011 334434444 3455
Q ss_pred HHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 291 LAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 291 r~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
...++.. ..+.+ + ..++.+..+.+++++
T Consensus 248 ~~~i~~~---~~ltt-v---~~~~~~~g~~a~~~l 275 (330)
T 3uug_A 248 VKSIIAG---EQYST-I---FKDTRELAKVTVNMV 275 (330)
T ss_dssp HHHHHTT---SSCCE-E---ECCHHHHHHHHHHHH
T ss_pred HHHHHcC---CceEE-E---ecCHHHHHHHHHHHH
Confidence 5555542 02222 2 457777666666654
No 88
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=43.26 E-value=74 Score=29.43 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.4
Q ss_pred cEEEEeecCCCCceEEEEEEEeCC
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRL 32 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~ 32 (329)
..++||++++. +|+.+++..|+.
T Consensus 216 ~~vlVEe~I~G-~E~~v~vl~~~~ 238 (364)
T 3i12_A 216 HKVVVEQGIKG-REIECAVLGNDN 238 (364)
T ss_dssp SEEEEEECCCS-EEEEEEEEESSS
T ss_pred CcEEEEcCcCC-eEEEEEEEeCCC
Confidence 57999999996 999999998875
No 89
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=42.90 E-value=1e+02 Score=26.90 Aligned_cols=118 Identities=8% Similarity=-0.004 Sum_probs=68.1
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHH-----hcccccCCCCCEEEEEec
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVV-----IDCATADPDGRKRALLIG 244 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~il-----l~~~~~~~~v~~vlv~i~ 244 (329)
.+|++++.-.+... -..+.+..+ |..+....-..++.+.+.-+++++-+ |+ +.|..++|+.
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~---~~~~~~ai~~--- 203 (303)
T 3kke_A 132 SRIAFISGTAIHDTAQRRKEGYLETLASA--GLRSEAAWVVDAGWEADAGSAALNTLYRGANLG---KPDGPTAVVV--- 203 (303)
T ss_dssp CSEEEEESCSSCHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTT---STTSCSEEEE---
T ss_pred CeEEEEeCCCcCccHHHHHHHHHHHHHHc--CCCCCcceEEecCCChHHHHHHHHHhcchhhhc---CCCCCcEEEE---
Confidence 57888865443221 123666664 44433222244666777777777766 64 3678888863
Q ss_pred cccCchHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHH
Q 020234 245 GGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 321 (329)
Q Consensus 245 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~ 321 (329)
.++.+| -|+++++++.+ .++| -|+...+.. .+ .-. .-.+.+. ..++.+..+.+
T Consensus 204 ----~nd~~A---~g~~~al~~~G-----~~vP~di~vig~D~~~--~~----~~~--~p~lttv----~~~~~~~g~~a 259 (303)
T 3kke_A 204 ----ASVNAA---VGALSTALRLG-----LRVPEDLSIVGINTTW--VS----DTV--YPALTTV----RLPLQRLGEVA 259 (303)
T ss_dssp ----SSHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCH--HH----HHS--SSCCEEE----ECCHHHHHHHH
T ss_pred ----CCHHHH---HHHHHHHHHcC-----CCCCCceEEEEEcChh--Hh----hcC--CCCeeEE----ecCHHHHHHHH
Confidence 237777 99999999986 3344 345566642 11 111 0033332 56777777777
Q ss_pred HHHh
Q 020234 322 IDCI 325 (329)
Q Consensus 322 v~~~ 325 (329)
++++
T Consensus 260 v~~L 263 (303)
T 3kke_A 260 ADVL 263 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 90
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=42.11 E-value=98 Score=26.72 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=55.2
Q ss_pred HHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhh
Q 020234 193 DTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLK 272 (329)
Q Consensus 193 D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~ 272 (329)
.++... |- +-+|+|-+.+++.+.++.+-. +| +.|.+-..+-++...+. ++.+++.+++.+..
T Consensus 114 ~~l~~~--G~---~Vi~LG~~vp~e~iv~~~~~~------~~--d~v~l~~S~l~~~~~~~---~~~~i~~l~~~~~~-- 175 (215)
T 3ezx_A 114 TMLGAN--GF---QIVDLGVDVLNENVVEEAAKH------KG--EKVLLVGSALMTTSMLG---QKDLMDRLNEEKLR-- 175 (215)
T ss_dssp HHHHHT--SC---EEEECCSSCCHHHHHHHHHHT------TT--SCEEEEEECSSHHHHTH---HHHHHHHHHHTTCG--
T ss_pred HHHHHC--CC---eEEEcCCCCCHHHHHHHHHHc------CC--CEEEEEchhcccCcHHH---HHHHHHHHHHcCCC--
Confidence 555554 22 457999999999887773321 44 45555112222222222 37777888876520
Q ss_pred cccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHH
Q 020234 273 AARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 324 (329)
Q Consensus 273 ~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~ 324 (329)
.++||++ ||.-..+ +.-++. |--. | ..+..+||+.+-++
T Consensus 176 -~~v~v~v--GG~~~~~--~~a~~i----Gad~--~--~~dA~~av~~a~~l 214 (215)
T 3ezx_A 176 -DSVKCMF--GGAPVSD--KWIEEI----GADA--T--AENAAEAAKVALEV 214 (215)
T ss_dssp -GGSEEEE--ESSSCCH--HHHHHH----TCCB--C--CSSHHHHHHHHHHT
T ss_pred -CCCEEEE--ECCCCCH--HHHHHh----CCeE--E--ECCHHHHHHHHHHh
Confidence 1466555 4432222 122333 6433 2 57888888877654
No 91
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=42.11 E-value=1e+02 Score=26.52 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=60.6
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+... -..+.+..+ |.+...-.-..++.+.+..+++++-+++ +.|++++|+. .
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 193 (291)
T 3egc_A 126 TRIGAIVGSAGLMTSRERLKGFRAAMSAA--GLPVRQEWIAAGGVRADNGRDGAIKVLT---GADRPTALLT-------S 193 (291)
T ss_dssp CSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEEC------CCHHHHHHHHT---C-CCCSEEEE-------S
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHHHHHc--CCCCCHHHeEeCCCChhHHHHHHHHHHh---CCCCCcEEEE-------C
Confidence 57888865443221 122566664 4433211112244455555555555554 2688888873 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+ .++| .|+...+... .+.. .-++.+. ..++.+..+.+++++
T Consensus 194 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~-------~~~~-~p~lttv----~~~~~~~g~~av~~l 252 (291)
T 3egc_A 194 SHRIT---EGAMQALNVLG-----LRYGPDVEIVSFDNLPW-------MAFL-DPPLPVV----EQPTRRIGQEAMRML 252 (291)
T ss_dssp SHHHH---HHHHHHHHHHT-----CCBTTTBEEEEESCCGG-------GGGS-SSCCCEE----ECCHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEEecCchh-------Hhhc-CCCceEE----EECHHHHHHHHHHHH
Confidence 36777 89999999986 2333 3455666542 1110 0144332 557888777777665
No 92
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.03A {Methanocaldococcus jannaschii DSM2661} SCOP: c.74.1.2
Probab=41.89 E-value=85 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=17.3
Q ss_pred eeecCCCCCHHHHHHHHHHHhhh
Q 020234 305 LEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 305 ~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+++|| .++.+++++++++++.
T Consensus 160 i~vfG--~dp~ev~~kv~~l~~~ 180 (192)
T 2php_A 160 IRVLG--RDAIEVVKKVEVIQKI 180 (192)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH
T ss_pred EEEEC--CCHHHHHHHHHHHHHH
Confidence 45776 7999999999998864
No 93
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=40.54 E-value=1.6e+02 Score=24.51 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=74.1
Q ss_pred cEEEEEcCC------cHHHHHHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHhcc-cccCCCCCEEEEEe---c
Q 020234 177 RIWTMVAGG------GASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDC-ATADPDGRKRALLI---G 244 (329)
Q Consensus 177 ~I~ii~NG~------Glam~t~D~l~~~g~gg~paN~--lDlgG~a~~e~~~~a~~ill~~-~~~~~~v~~vlv~i---~ 244 (329)
+|+|+..== .+---+.|.|..+ | .|. +.+.|.-. +=-+.+.+.+. ..+..+.|+|+..- =
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G---~~i~v~~VPGafE---iP~aa~~la~~~~~~~~~yDavIaLG~VIr 85 (157)
T 2i0f_A 14 HLLIVEARFYDDLADALLDGAKAALDEA--G---ATYDVVTVPGALE---IPATISFALDGADNGGTEYDGFVALGTVIR 85 (157)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHT--T---CEEEEEEESSGGG---HHHHHHHHHHHHHTTCCCCSEEEEEEEEEC
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHc--C---CCeEEEECCcHHH---HHHHHHHHHhhccccCCCCCEEEEeeeeec
Confidence 567665331 3444567888885 4 333 34555443 33344444430 00016688887764 4
Q ss_pred cccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHH
Q 020234 245 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 323 (329)
Q Consensus 245 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-l~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~ 323 (329)
|+...++-|+ +++.+.+-+..-. ..+||.-. |.-.+.++|.+.- |... ..-=.||+.++++
T Consensus 86 G~T~Hfd~Va---~~v~~gl~~vsl~---~~vPV~~GVLT~~~~eQA~~Ra-------g~~~-----~nkG~eaA~aAle 147 (157)
T 2i0f_A 86 GETYHFDIVS---NESCRALTDLSVE---ESIAIGNGILTVENEEQAWVHA-------RRED-----KDKGGFAARAALT 147 (157)
T ss_dssp CSSSTTHHHH---HHHHHHHHHHHHH---TTCCEEEEEEEESSHHHHHHHH-------CTTT-----TCHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHHHh-------Cccc-----cccHHHHHHHHHH
Confidence 8888888887 7777766655422 47998866 7777888875443 3211 2356778899888
Q ss_pred Hhh
Q 020234 324 CIM 326 (329)
Q Consensus 324 ~~~ 326 (329)
+++
T Consensus 148 m~~ 150 (157)
T 2i0f_A 148 MIG 150 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 94
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=40.12 E-value=1.4e+02 Score=25.68 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=65.7
Q ss_pred CcEEEEEcCC-cHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC
Q 020234 176 GRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248 (329)
Q Consensus 176 g~I~ii~NG~-Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~ 248 (329)
++|++++.-. +... -..+.+..+ |-+.....-+-++.+.+.-+++++-+++ +.|+.++|+.
T Consensus 134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 201 (289)
T 2fep_A 134 TDIAFVSGPMAEPINRSKKLQGYKRALEEA--NLPFNEQFVAEGDYTYDSGLEALQHLMS---LDKKPTAILS------- 201 (289)
T ss_dssp SSEEEEESCTTSHHHHTTHHHHHHHHHHHT--TCCCCGGGEEECCSCHHHHHHHHHHHTT---SSSCCSEEEE-------
T ss_pred CeEEEEeCCccccccHHHHHHHHHHHHHHc--CCCCChheEeeCCCCHHHHHHHHHHHHc---CCCCCCEEEE-------
Confidence 6799987543 3222 234667664 4443221112355677777777776665 2577888863
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++.+| .|+++++++.+ .++| .|+...+... + +.+. -.+.+ + ..++.+..+.+++++
T Consensus 202 ~~d~~A---~g~~~al~~~G-----~~vP~di~vvg~D~~~~--~-~~~~-----p~ltt-v---~~~~~~~g~~a~~~l 261 (289)
T 2fep_A 202 ATDEMA---LGIIHAAQDQG-----LSIPEDLDIIGFDNTRL--S-LMVR-----PQLST-V---VQPTYDIGAVAMRLL 261 (289)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCGG--G-TSSS-----SCCEE-E---ECCHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcC-----CCCCCCeEEEEECChHH--H-hhcC-----CceeE-E---eCCHHHHHHHHHHHH
Confidence 236777 89999999886 2333 3455665432 1 1111 13422 2 456777666666554
No 95
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=39.15 E-value=1.3e+02 Score=24.35 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=44.1
Q ss_pred eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC-chHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 208 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA-NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 208 lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~-~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
.| ++.+|+.+..+++.+-+. -|+-+.++|.-+|+.+ +..+.. ..+.++++. .+. ++..+ +.
T Consensus 41 ~D--yaHnP~si~a~l~al~~~---~~~~riivvf~~g~~s~r~k~~~---~~~~~~~~~-------aD~--vi~~~-~~ 102 (163)
T 3mvn_A 41 DD--FAHHPTAITATIDALRAK---VGQQRILAVLEPRSNTMKMGVHK---HELATSLQD-------ADS--VFIYQ-PP 102 (163)
T ss_dssp EE--CCCSHHHHHHHHHHHHHH---HTTSCEEEEECCC---------C---HHHHHHHTT-------CSE--EEEEC-C-
T ss_pred Ec--CCCCHHHHHHHHHHHHHh---cCCCcEEEEECCCCcchhhHHHH---HHHHHHHhc-------CCE--EEEEC-CC
Confidence 45 678888888888887541 1333444443366543 322222 333333321 122 22233 32
Q ss_pred HHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 287 YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 287 ~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
+.. ..+.+..+..+.++.+ +++.++|++.+.+.++
T Consensus 103 ~~~--~~~~~~~~~~~~~~~~---~~d~~eai~~~~~~~~ 137 (163)
T 3mvn_A 103 TIE--WQVSEVLANLAQPAIS---ADDVDELVMRIVQQAK 137 (163)
T ss_dssp -----CCHHHHHTTCCSCEEE---ESSHHHHHHHHHHHCC
T ss_pred Ccc--cCHHHHHhhCCCCeEE---ECCHHHHHHHHHHhCC
Confidence 111 1122222222445554 5799999999888764
No 96
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=39.11 E-value=1.3e+02 Score=24.95 Aligned_cols=123 Identities=13% Similarity=-0.015 Sum_probs=74.6
Q ss_pred CcEEEEEcCC------cHHHHHHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe---c
Q 020234 176 GRIWTMVAGG------GASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 244 (329)
Q Consensus 176 g~I~ii~NG~------Glam~t~D~l~~~g~gg~paN~--lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i---~ 244 (329)
-+|+|+..-= .+---+.|.|..+ |.+ .|. +.+.| +-.+--+.+.+.+ ..+.|+|+..- =
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--Gv~-~~i~v~~VPG---afEiP~aa~~la~----~~~yDavIaLG~VIr 83 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKY--SVN-EDIDVVWVPG---AYELGVTAQALGK----SGKYHAIVCLGAVVK 83 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCC-SCCEEEEESS---HHHHHHHHHHHHH----TTCCSEEEEEEECCC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCC-CceEEEECCc---HHHHHHHHHHHHh----cCCCCEEEEeccccc
Confidence 4677775431 3444567888886 544 332 23433 3334455555555 67789988775 3
Q ss_pred cccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHH
Q 020234 245 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 323 (329)
Q Consensus 245 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-l~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~ 323 (329)
|+...++-|+ +++.+.+-+..-. ..+||.-. |.-.+.++|.+ .+ |... ..-=.||+..+++
T Consensus 84 G~T~Hfd~Va---~~v~~gl~~v~L~---~~vPV~~GVLT~~~~eQA~~---Ra----g~~~-----~nKG~eaA~aAle 145 (156)
T 1c2y_A 84 GDTSHYDAVV---NSASSGVLSAGLN---SGVPCVFGVLTCDNMDQAIN---RA----GGKA-----GNKGAESALTAIE 145 (156)
T ss_dssp CSSTHHHHHH---HHHHHHHHHHHHH---HTSCEEEEEECCSSHHHHHH---HE----EETT-----EEHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHH---Hc----CCcc-----cchHHHHHHHHHH
Confidence 7888877777 6666666555421 46998866 77778887643 22 3221 1244678888888
Q ss_pred Hhh
Q 020234 324 CIM 326 (329)
Q Consensus 324 ~~~ 326 (329)
+++
T Consensus 146 m~~ 148 (156)
T 1c2y_A 146 MAS 148 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 97
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=39.05 E-value=65 Score=28.28 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcccccCCCCCEEEEEec-cccCchHHHhhhHHHHHHHHHHhhhhhhcccceE-EEE--eCCCCHHH--
Q 020234 216 EEEVLQYARVVIDCATADPDGRKRALLIG-GGIANFTDVATTFNGIIRALREKESKLKAARMHI-FVR--RGGPNYQT-- 289 (329)
Q Consensus 216 ~e~~~~a~~ill~~~~~~~~v~~vlv~i~-ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pv-vvr--l~G~~~~~-- 289 (329)
-+.+.+++..+++ ++...++ .|+. +...+..+++ +.+.+++..-. ..++|- ++| +|....+-
T Consensus 195 v~Dva~a~~~~~~----~~~~~g~-yn~~~~~~~t~~e~~---~~ia~~lgrp~----~~pvP~~~~~~~~g~~~~~~~l 262 (298)
T 4b4o_A 195 IGDLAGILTHALE----ANHVHGV-LNGVAPSSATNAEFA---QTFGAALGRRA----FIPLPSAVVQAVFGRQRAIMLL 262 (298)
T ss_dssp HHHHHHHHHHHHH----CTTCCEE-EEESCSCCCBHHHHH---HHHHHHHTCCC----CCCBCHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCCCe-EEEECCCccCHHHHH---HHHHHHhCcCC----cccCCHHHHHHHhcchhHHHhh
Confidence 5778888877777 7888885 5663 3334456666 66666543210 123342 233 22110000
Q ss_pred -HH----HHHHHhccccCCceeecCCCCCHHHHHHHHHH
Q 020234 290 -GL----AKMRALGEELGIPLEVYGPEATMTGICKQAID 323 (329)
Q Consensus 290 -ar----~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~ 323 (329)
++ +.|.+ +|.... |.+.++|.+..++
T Consensus 263 ~~~rv~~~kl~~----~Gf~f~----yp~l~~al~~l~~ 293 (298)
T 4b4o_A 263 EGQKVIPRRTLA----TGYQYS----FPELGAALKEIAE 293 (298)
T ss_dssp CCCCBCCHHHHH----TTCCCS----CCSHHHHHHHHHH
T ss_pred CCCEEcHHHHHH----CCCCCC----CCCHHHHHHHHHH
Confidence 00 12333 387542 7899999998776
No 98
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=39.04 E-value=35 Score=37.40 Aligned_cols=30 Identities=10% Similarity=0.377 Sum_probs=25.4
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISF 38 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~ 38 (329)
..++||++++..+|+.+.+..|..+.++.+
T Consensus 198 ~~vlVEeyI~G~reieV~vl~d~~G~vv~l 227 (1150)
T 3hbl_A 198 SEVYIERYIDNPKHIEVQVIGDEHGNIVHL 227 (1150)
T ss_dssp -CBEEECCCSSCEEEEEEEEECSSSCEEEE
T ss_pred CcEEEEEccCCCcEEEEEEEEeCCCCEEEE
Confidence 468999999988999999999988776544
No 99
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=38.47 E-value=1e+02 Score=29.11 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=40.4
Q ss_pred eeeccCC----CCHHHHHHHHHHHhcccccCCCCCEEEEEe--cc--c---cCchHHHhhhHHHHHHHHHHhhhhh-hcc
Q 020234 207 YAEYSGA----PNEEEVLQYARVVIDCATADPDGRKRALLI--GG--G---IANFTDVATTFNGIIRALREKESKL-KAA 274 (329)
Q Consensus 207 ~lDlgG~----a~~e~~~~a~~ill~~~~~~~~v~~vlv~i--~g--g---i~~~~~vA~~~~gii~al~~~~~~~-~~~ 274 (329)
.+.+||+ .+.+.|.++++.+- +..+.+-||+ |. | +.+. +.. ..+++++++..... ...
T Consensus 150 ~vniggn~~t~~~~~dy~~~~~~~~------~~ad~ielNisCPn~~G~~~l~~~-~~l---~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 150 GVNLGKNKTSVDAAEDYAEGVRVLG------PLADYLVVNVSSPNTAGLRSLQGK-AEL---RRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp EEEECCCTTCSCHHHHHHHHHHHHG------GGCSEEEEECCCTTSTTGGGGGSH-HHH---HHHHHHHHHHHHTSCGGG
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHh------hhCCEEEEECCCCCCCCccccCCH-HHH---HHHHHHHHHHHhhccccC
Confidence 3667886 35788888888864 3468899998 32 1 1222 222 45666665532110 013
Q ss_pred cceEEEEeCCC
Q 020234 275 RMHIFVRRGGP 285 (329)
Q Consensus 275 ~~pvvvrl~G~ 285 (329)
++||++++.-.
T Consensus 220 ~~Pv~vKi~p~ 230 (367)
T 3zwt_A 220 RPAVLVKIAPD 230 (367)
T ss_dssp CCEEEEEECSC
T ss_pred CceEEEEeCCC
Confidence 68999996543
No 100
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=38.44 E-value=1.4e+02 Score=25.80 Aligned_cols=122 Identities=7% Similarity=-0.015 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCcHHHH------HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC
Q 020234 175 KGRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248 (329)
Q Consensus 175 ~g~I~ii~NG~Glam~------t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~ 248 (329)
.++|++++...+.... ..+.+... |.+. ...-++.+.+..+++++-+++ ++|++++|+.
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--g~~~---~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 194 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDK--GIFF---EELDVGTDPNQVQSRVKSYFK---IHPETNIIFC------- 194 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEE---EEEECCSCHHHHHHHHHHHHH---HCTTCCEEEE-------
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhc--CCeE---EEeecCCChHHHHHHHHHHHH---hCCCCCEEEE-------
Confidence 4679988654443222 23666664 4332 233344566666666665554 2788888863
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCc-eeecCCCCCHHHHHHHHHHHh
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP-LEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip-~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++.+| .|+++++++.+.. .+.+--.|+...+. ..+...+.+ |.+ +.+ ..++.+..+.+++++
T Consensus 195 ~~d~~A---~g~~~al~~~g~~-vP~~dv~vig~D~~--~~~~~~i~~-----~~~lttv---~~~~~~~g~~av~~l 258 (297)
T 3rot_A 195 LTSQAL---DPLGQMLLHPDRY-DFNYQPQVYSFDKT--PNTVSLIHK-----KLVNYVM---DQQPFLMGYLSITQL 258 (297)
T ss_dssp SSHHHH---HHHHHHHHSHHHH-TCCCCCEEEEECCC--HHHHHHHHT-----TSCCEEE---CCCHHHHHHHHHHHH
T ss_pred cCCcch---HHHHHHHHhcCCc-cCCCceEEEEeCCC--HHHHHHHHc-----CCceEEE---ecChHHHHHHHHHHH
Confidence 236777 9999999988631 01112234556654 344444443 322 222 567777666666654
No 101
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=38.18 E-value=1e+02 Score=25.66 Aligned_cols=124 Identities=11% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CcEEEEEcCC------cHHHHHHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe---c
Q 020234 176 GRIWTMVAGG------GASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 244 (329)
Q Consensus 176 g~I~ii~NG~------Glam~t~D~l~~~g~gg~paN~--lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i---~ 244 (329)
-+|||+..== .+---+.|.|..+ |.+..|. +.+.|.-. +--+.+.+.+ ..+.|+|+..- =
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIalG~VIr 83 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRH--GGREEDITLVRVPGSWE---IPVAAGELAR----KEDIDAVIAIGVLIR 83 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHT----CTTCCEEEEEEEEEC
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 4677765421 3444567899886 6665543 45666544 3344555555 66788888765 3
Q ss_pred cccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHH
Q 020234 245 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 323 (329)
Q Consensus 245 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-l~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~ 323 (329)
|+...++-|+ +++.+.+-+..-. ..+||.-. |.-.+.++|.+ .+ |... ..-=.||+..+++
T Consensus 84 G~T~Hfd~Va---~~vs~gl~~v~l~---~~vPV~~GVLT~~~~eQA~~---Ra----g~~~-----~nkG~eaA~aale 145 (154)
T 1hqk_A 84 GATPHFDYIA---SEVSKGLANLSLE---LRKPITFGVITADTLEQAIE---RA----GTKH-----GNKGWEAALSAIE 145 (154)
T ss_dssp CSSTHHHHHH---HHHHHHHHHHHHH---HTSCEEEEEEEESSHHHHHH---HE----EETT-----EEHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHH---Hh----cccc-----cchHHHHHHHHHH
Confidence 8888877777 6666665555321 36998865 77778888743 33 4321 2345678888888
Q ss_pred Hhh
Q 020234 324 CIM 326 (329)
Q Consensus 324 ~~~ 326 (329)
+++
T Consensus 146 m~~ 148 (154)
T 1hqk_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 102
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=37.63 E-value=1.6e+02 Score=27.38 Aligned_cols=104 Identities=9% Similarity=0.030 Sum_probs=67.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++ ... .++||++-.|++
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~--~~~-----grvpViaGvg~~ 102 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIA-----DGMSAVVYCGSMGDWPLLTDEQ-RMEGVER--LVK-----AGIPVIVGTGAV 102 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCCEEESSGGGTGGGSCHHH-HHHHHHH--HHH-----TTCCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccCcChhhCCHHH-HHHHHHH--HhC-----CCCcEEEecCCC
Confidence 34444588999999999999885 5899998876433222111110 1345554 222 369999999999
Q ss_pred CHHHHHHHHHHhccccCC-------ceeecCCC-CCHHHHHHHHHHHhh
Q 020234 286 NYQTGLAKMRALGEELGI-------PLEVYGPE-ATMTGICKQAIDCIM 326 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gi-------p~~~~g~~-~~~~~av~~~v~~~~ 326 (329)
+-+++.+..+.+. +.|. |. | .. .+.++.++.+-.++.
T Consensus 103 st~eai~la~~A~-~~Gadavlv~~P~--y-~~~~s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 103 NTASAVAHAVHAQ-KVGAKGLMVIPRV--L-SRGSVIAAQKAHFKAILS 147 (344)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEECCCC--S-SSTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCc--c-CCCCCHHHHHHHHHHHHh
Confidence 9999988777652 2352 32 2 12 477778888877765
No 103
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=37.36 E-value=1.5e+02 Score=25.35 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=65.2
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
++|++++.-.+... -..+.+..+ |.+.....-+.++.+.+.-+++++-+++ +.|+.++|+. .
T Consensus 140 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 207 (296)
T 3brq_A 140 QEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA-------S 207 (296)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHTT--TCCCCGGGEECCCSSHHHHHHHHHHHHT---C--CCSEEEE-------S
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------C
Confidence 67998864333211 133666664 5443221123456677766777666665 2577888763 1
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .++++++++.+ .++| .|+...+.... +.+.. ++.+ + ..++.+..+.+++++
T Consensus 208 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~~---~~~~p-----~ltt-v---~~~~~~~g~~a~~~l 266 (296)
T 3brq_A 208 NDDMA---IGAMKALHERG-----VAVPEQVSVIGFDDIAIA---PYTVP-----ALSS-V---KIPVTEMIQEIIGRL 266 (296)
T ss_dssp SHHHH---HHHHHHHHHHT-----CCTTTTCEEEEESCCTTG---GGSSS-----CCEE-E---ECCHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC-----CCCCCceEEEeecCchhh---hccCC-----Ccee-e---eCCHHHHHHHHHHHH
Confidence 36677 89999999886 2333 34556665421 11111 4433 2 457777777776655
No 104
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=37.24 E-value=1.3e+02 Score=25.91 Aligned_cols=117 Identities=7% Similarity=-0.043 Sum_probs=64.9
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCC-ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~pa-N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~ 248 (329)
.+|++++.-.+... -..+.+... |-+.. .++ +.++.+.+.-+++++-+++ +.|+.++|+.
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 195 (290)
T 2rgy_A 129 RKLAVISGPFTASDNVERLDGFFDELARH--GIARDSVPL-IESDFSPEGGYAATCQLLE---SKAPFTGLFC------- 195 (290)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHTT--TCCGGGSCE-EECCSSHHHHHHHHHHHHH---HTCCCSEEEE-------
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCCCcccE-EecCCChhHHHHHHHHHHh---CCCCCcEEEE-------
Confidence 57999865433211 133566664 44322 222 2355667766666666664 2578888873
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++.+| .|+++++++.+ .++| -|+...+.... +.+. -.+.+ + ..++.+..+.+++++
T Consensus 196 ~~d~~A---~g~~~al~~~G-----~~vP~di~vvg~D~~~~~---~~~~-----p~ltt-v---~~~~~~~g~~a~~~l 255 (290)
T 2rgy_A 196 ANDTMA---VSALARFQQLG-----ISVPGDVSVIGYDDDYSA---AYAA-----PALTS-V---HIPTAELTQNAVRWL 255 (290)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCTTS---TTSS-----SCCEE-E---ECCHHHHHHHHHHHH
T ss_pred CCcHHH---HHHHHHHHHcC-----CCCCCceEEEEeCCchHh---cccC-----CCceE-E---eCCHHHHHHHHHHHH
Confidence 236777 89999999886 2333 34556554321 1111 13432 2 456777666666654
No 105
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=37.12 E-value=56 Score=32.32 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=24.2
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTIS 37 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii 37 (329)
..++|||+++..+|+.+.+..|..+.++.
T Consensus 273 ~~vlvEe~i~g~~e~sv~vl~d~~G~vv~ 301 (554)
T 1w96_A 273 SPIFIMKLAGRARHLEVQLLADQYGTNIS 301 (554)
T ss_dssp CCEEEEECCCSCEEEEEEEEECTTSCEEE
T ss_pred CCEEEEEecCCCcEEEEEEEEcCCCCEEE
Confidence 47999999998899999999998766543
No 106
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=36.40 E-value=1.9e+02 Score=24.10 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=78.6
Q ss_pred CCcEEEEEcCC------cHHHHHHHHHhccCCC-CCCCce--eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe--
Q 020234 175 KGRIWTMVAGG------GASVIYADTVGDLGYA-SELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-- 243 (329)
Q Consensus 175 ~g~I~ii~NG~------Glam~t~D~l~~~g~g-g~paN~--lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i-- 243 (329)
+-||+|+..== .+---+.|.|..+ | .+..|. +.+.|.-.-- -+.+.+++ ..+.|+|+..-
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G~v~~~~i~v~~VPGafEiP---~aa~~la~----~~~yDavIaLG~V 82 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRI--GQVKDDNITVVWVPGAYELP---LATEALAK----SGKYDAVVALGTV 82 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCCTTSEEEEEESSTTTHH---HHHHHHHH----HCSCSEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCcccceEEEEcCcHHHHH---HHHHHHHh----cCCCCEEEEeeee
Confidence 44677665321 3444577999886 6 555544 5677766533 44444454 45688887765
Q ss_pred -ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHH
Q 020234 244 -GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 321 (329)
Q Consensus 244 -~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-l~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~ 321 (329)
=|+...++-|+ +++.+.+-+..-. ..+||... |.-.+.++|.+. + |... ..-=.||+..+
T Consensus 83 IrG~T~Hfd~Va---~~v~~Gl~~v~L~---~~vPV~~GVLT~~~~eQA~~R---a----g~~~-----~nKG~eaA~aa 144 (156)
T 3nq4_A 83 IRGGTAHFEYVA---GGASNGLASVAQD---SGVPVAFGVLTTESIEQAIER---A----GTKA-----GNKGAEAALTA 144 (156)
T ss_dssp ECCSSTHHHHHH---HHHHHHHHHHHHH---HCCCEEEEEEEESCHHHHHHH---B----TSTT-----CBHHHHHHHHH
T ss_pred ecCCchHHHHHH---HHHHHHHHHHHhc---cCCCEEEEEeCCCCHHHHHHH---h----CCcc-----cccHHHHHHHH
Confidence 37877777777 6666665555422 46998866 777888876433 3 4322 34567788888
Q ss_pred HHHhh
Q 020234 322 IDCIM 326 (329)
Q Consensus 322 v~~~~ 326 (329)
+++++
T Consensus 145 lem~~ 149 (156)
T 3nq4_A 145 LEMIN 149 (156)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 107
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=36.26 E-value=1.4e+02 Score=26.54 Aligned_cols=118 Identities=8% Similarity=0.011 Sum_probs=65.3
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+... -..+.+..+ |-+.....-.-++.+.+.-+++++-+++ +.+..++|+. .
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 245 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFC-------G 245 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHC--CCCCChhheEeCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 57888854322211 133666664 4332211123455577777777776665 2577888873 1
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+ .++| -|+...+.... +.+.. ++.+ + ..++.+..+.+++++
T Consensus 246 nd~~A---~g~~~al~~~G-----~~vP~disvig~D~~~~~---~~~~p-----~ltt-v---~~~~~~~g~~a~~~l 304 (340)
T 1qpz_A 246 GDIMA---MGALCAADEMG-----LRVPQDVSLIGYDNVRNA---RYFTP-----ALTT-I---HQPKDSLGETAFNML 304 (340)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCTTG---GGSSS-----CCEE-E---ECCHHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHcC-----CCCCCCeEEEeECCchHh---hccCC-----ceeE-E---ecCHHHHHHHHHHHH
Confidence 36777 89999999986 3344 34556665421 11111 4433 2 456777666666554
No 108
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=36.12 E-value=1e+02 Score=25.68 Aligned_cols=124 Identities=12% Similarity=0.044 Sum_probs=76.8
Q ss_pred CcEEEEEcCC------cHHHHHHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe---c
Q 020234 176 GRIWTMVAGG------GASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 244 (329)
Q Consensus 176 g~I~ii~NG~------Glam~t~D~l~~~g~gg~paN~--lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i---~ 244 (329)
-+|||+..== .+---+.|.|..+ |.+..|. +.+.|.-. +--+.+.+.+ ..+.|+|+..- =
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VIr 83 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRH--GVDTNDIDVAWVPGAFE---IPFAAKKMAE----TKKYDAIITLGTVIR 83 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHH----TSCCSEEEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 4677775431 3444567899886 6665543 45666544 3344455555 56788888765 3
Q ss_pred cccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHH
Q 020234 245 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 323 (329)
Q Consensus 245 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-l~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~ 323 (329)
|+...++-|+ +++.+.+-+..-. ..+||.-. |.-.+.++|. ..+ |... ..-=.||+..+++
T Consensus 84 G~T~Hfd~V~---~~vs~Gl~~v~l~---~~vPV~~GVLT~~~~eQA~---~Ra----g~~~-----~nkG~eaA~aale 145 (154)
T 1rvv_A 84 GATTHYDYVC---NEAAKGIAQAANT---TGVPVIFGIVTTENIEQAI---ERA----GTKA-----GNKGVDCAVSAIE 145 (154)
T ss_dssp CSSSHHHHHH---HHHHHHHHHHHHH---HCSCEEEEEEEESSHHHHH---HTE----EETT-----EEHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---hCCCEEEEecCCCCHHHHH---HHh----cccc-----cchHHHHHHHHHH
Confidence 8888877777 6666665555321 46998865 7767788773 333 4321 2345678888888
Q ss_pred Hhh
Q 020234 324 CIM 326 (329)
Q Consensus 324 ~~~ 326 (329)
+++
T Consensus 146 m~~ 148 (154)
T 1rvv_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 109
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=35.94 E-value=40 Score=31.78 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEeecCCCCceEEEEEEEeCC
Q 020234 10 TFIVEPFVPHNQEYYLSIVSDRL 32 (329)
Q Consensus 10 ~vlVee~~~~~~E~Ylsi~~Dr~ 32 (329)
.++|||+++ .+|+.+.+..|..
T Consensus 185 ~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 185 PVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp CEEEEECCC-SEEEEEEEEEETT
T ss_pred eEEEEECCc-CcEEEEEEEECCC
Confidence 799999999 8999999998764
No 110
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=35.92 E-value=41 Score=29.33 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcccccCCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHH
Q 020234 217 EEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 294 (329)
Q Consensus 217 e~~~~a~~ill~~~~~~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l 294 (329)
+.+.++++.+-+ ++.++.|++.+ |||... -+ .+|.++++.. ++||++...|.-...|--++
T Consensus 60 ~~i~~~L~~l~~----~~~~k~I~l~InSPGG~v~---ag---~~I~~~i~~~-------~~pV~t~v~G~AaS~G~~Ia 122 (218)
T 1y7o_A 60 NSVIAQLLFLDA----QDSTKDIYLYVNTPGGSVS---AG---LAIVDTMNFI-------KADVQTIVMGMAASMGTVIA 122 (218)
T ss_dssp HHHHHHHHHHHH----HCTTSCEEEEEEECCBCHH---HH---HHHHHHHHHS-------SSCEEEEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHh----cCCCCCEEEEEECcCCCHH---HH---HHHHHHHHhc-------CCCEEEEEccEeHHHHHHHH
Confidence 344455444444 56667665555 887542 12 6677777665 47888776665444443333
No 111
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.80 E-value=1.7e+02 Score=25.89 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=66.8
Q ss_pred CcEEEEEcCC-cHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC
Q 020234 176 GRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248 (329)
Q Consensus 176 g~I~ii~NG~-Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~ 248 (329)
.+|++++.-. +... -..+.+..+ |.+.....-+-++.+.+.-+++++-+++ +.|..++|+.
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 245 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTES--GLPVRDSYIVEGDYTYDSGIEAVEKLLE---EDEKPTAIFV------- 245 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTT--TCCCCGGGEEECCSSHHHHHHHHHHHHH---SSSCCSEEEE-------
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------
Confidence 5799986543 3221 234677664 4443221123355677776777766665 2567888873
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++.+| .|+++++++.+ .++| -|+...+... + +.+. -++.+ + ..++.+..+.+++++
T Consensus 246 ~nd~~A---~g~~~al~~~G-----~~vP~disvvg~D~~~~--~-~~~~-----p~ltt-v---~~~~~~~g~~a~~~l 305 (332)
T 2hsg_A 246 GTDEMA---LGVIHGAQDRG-----LNVPNDLEIIGFDNTRL--S-TMVR-----PQLTS-V---VQPMYDIGAVAMRLL 305 (332)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CCHHHHCEEEEESCCGG--G-GSSS-----SCCEE-E---ECCHHHHHHHHHHHH
T ss_pred CChHHH---HHHHHHHHHcC-----CCCCCCeEEEEECChHH--H-hccC-----CceeE-E---ECCHHHHHHHHHHHH
Confidence 137777 89999999986 3344 3455666542 1 1111 13432 2 457777666666654
No 112
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=35.51 E-value=54 Score=28.55 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=32.1
Q ss_pred eeccCCCCH---HHHHHHHHHHhcccccCCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEe
Q 020234 208 AEYSGAPNE---EEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR 282 (329)
Q Consensus 208 lDlgG~a~~---e~~~~a~~ill~~~~~~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl 282 (329)
+-++|..++ +.+...+..+-+ .++ +.|++.| |||-.. -+ .+|.++++.. +.||++..
T Consensus 42 I~l~G~I~~~~a~~i~~~L~~l~~---~~~--k~I~l~INSPGGsv~---a~---~~I~~~i~~~-------~~pV~t~v 103 (215)
T 2f6i_A 42 IYLTDEINKKTADELISQLLYLDN---INH--NDIKIYINSPGGSIN---EG---LAILDIFNYI-------KSDIQTIS 103 (215)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHH---HCC--SCEEEEEEECCBCHH---HH---HHHHHHHHHS-------SSCEEEEE
T ss_pred EEEccEECHHHHHHHHHHHHHHHh---CCC--CcEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEE
Confidence 344444444 344444443322 244 5554444 888642 22 7788888776 35677665
Q ss_pred CCCC
Q 020234 283 GGPN 286 (329)
Q Consensus 283 ~G~~ 286 (329)
.|.-
T Consensus 104 ~g~A 107 (215)
T 2f6i_A 104 FGLV 107 (215)
T ss_dssp EEEE
T ss_pred eeEh
Confidence 5543
No 113
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=34.49 E-value=90 Score=32.46 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=58.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
.-+|+|.+.+++.+.+++ . ..+.+.|.+-.. .+...+.. ..++++|++.+. ..++| -.||.
T Consensus 626 eVi~lG~~v~~eeiv~aA---~-----e~~adiVglSsl--~~~~~~~~---~~vi~~L~~~G~----~~i~V--ivGG~ 686 (727)
T 1req_A 626 DVDVGPLFQTPEETARQA---V-----EADVHVVGVSSL--AGGHLTLV---PALRKELDKLGR----PDILI--TVGGV 686 (727)
T ss_dssp EEEECCTTBCHHHHHHHH---H-----HTTCSEEEEEEC--SSCHHHHH---HHHHHHHHHTTC----TTSEE--EEEES
T ss_pred EEEeCCCCCCHHHHHHHH---H-----HcCCCEEEEeee--cHhHHHHH---HHHHHHHHhcCC----CCCEE--EEcCC
Confidence 347888999999877763 2 234555554432 22333434 788888888752 24444 44552
Q ss_pred CHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 286 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
...+-.+.+++. |+.- +|++-++..+.++.+++..+
T Consensus 687 ~p~~d~~~l~~~----GaD~-~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 687 IPEQDFDELRKD----GAVE-IYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp CCGGGHHHHHHT----TEEE-EECTTCCHHHHHHHHHHHHH
T ss_pred CccccHHHHHhC----CCCE-EEcCCccHHHHHHHHHHHHH
Confidence 222222346666 8864 45567888998888887764
No 114
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=34.29 E-value=2e+02 Score=23.93 Aligned_cols=126 Identities=14% Similarity=0.073 Sum_probs=79.1
Q ss_pred CcEEEEEcCC------cHHHHHHHHHhc-cCCCCCCCc--eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe---
Q 020234 176 GRIWTMVAGG------GASVIYADTVGD-LGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI--- 243 (329)
Q Consensus 176 g~I~ii~NG~------Glam~t~D~l~~-~g~gg~paN--~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i--- 243 (329)
-||+|+..== .+---+.|.|.. + |.+..| -+++.|.-. +=-+.+.+.+ ..+.|+|+..-
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~--Gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VI 88 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKH--DVKLENIDIESVPGSWE---LPQGIRASIA----RNTYDAVIGIGVLI 88 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHH--CCCGGGEEEEECSSGGG---HHHHHHHHHH----HSCCSEEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEecccc
Confidence 4677775431 344456788888 7 666666 556666654 3344455554 45688887664
Q ss_pred ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHH
Q 020234 244 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 322 (329)
Q Consensus 244 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-l~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v 322 (329)
=|+...++-|+ +++.+.+-+..-. ..+||.-. |.-.+.+++.+. + |..- ...-=.||+..++
T Consensus 89 rG~T~Hfd~Va---~~v~~Gl~~v~L~---~~vPV~~GVLT~~~~eQA~~R---a----g~~~----~~nKG~eaA~aal 151 (159)
T 1kz1_A 89 KGSTMHFEYIS---EAVVHGLMRVGLD---SGVPVILGLLTVLNEEQALYR---A----GLNG----GHNHGNDWGSAAV 151 (159)
T ss_dssp CCSSSHHHHHH---HHHHHHHHHHHHH---HCCCEEEEEEEESSHHHHHHH---B----TCTT----CCBHHHHHHHHHH
T ss_pred cCCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHHH---h----CCcc----ccchHHHHHHHHH
Confidence 38888888777 6666666555422 46998866 777788877443 2 4210 0234567899999
Q ss_pred HHhhh
Q 020234 323 DCIMS 327 (329)
Q Consensus 323 ~~~~~ 327 (329)
++++-
T Consensus 152 em~~l 156 (159)
T 1kz1_A 152 EMGLK 156 (159)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88753
No 115
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=33.58 E-value=1.3e+02 Score=23.40 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=43.4
Q ss_pred CCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecC---CCC
Q 020234 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYG---PEA 312 (329)
Q Consensus 236 v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g---~~~ 312 (329)
.+.++++ +.++...|..+. ..+.+..++... ....+ .+.|.+ ..-+++|+.+ |+.- .+| .+.
T Consensus 52 ~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l--~l~~~~-~~v~~~l~~~----gl~~-~~~~~~i~~ 116 (135)
T 4dgf_A 52 PKVFILR-MRRVPVIDATGM--HALWEFQESCEK----RGTIL--LLSGVS-DRLYGALNRF----GFIE-ALGEERVFD 116 (135)
T ss_dssp CSEEEEE-CTTCSCBCHHHH--HHHHHHHHHHHH----HTCEE--EEESCC-HHHHHHHHHH----THHH-HHCGGGBCS
T ss_pred CcEEEEE-cCCCCccCHHHH--HHHHHHHHHHHH----CCCEE--EEEcCC-HHHHHHHHHc----CChh-hcCccceeC
Confidence 3444444 566666665442 555565555542 23333 344544 4456777766 6421 111 278
Q ss_pred CHHHHHHHHHHHhhhc
Q 020234 313 TMTGICKQAIDCIMSA 328 (329)
Q Consensus 313 ~~~~av~~~v~~~~~~ 328 (329)
|.++|+..+.+....+
T Consensus 117 t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 117 HIDKALAYAKLLVETA 132 (135)
T ss_dssp SHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999988776554
No 116
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=33.29 E-value=81 Score=34.84 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=17.4
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEEEe
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 39 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~S 39 (329)
..++||++++..+|+.+.+..|..+.++.++
T Consensus 223 ~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~ 253 (1236)
T 3va7_A 223 AGVFMERFVNNARHVEIQMMGDGFGKAIAIG 253 (1236)
T ss_dssp ----------CCEEEEEEEEEESSSCEEEEE
T ss_pred CcEEEeeccCCCeEEEEEEEecCCceEEEEe
Confidence 4699999999889999999999887765554
No 117
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=33.02 E-value=2e+02 Score=25.84 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=55.1
Q ss_pred eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc-hHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 207 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN-FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 207 ~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~-~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
-+|+|-+.+++.+.++.+ ..+.+.|.+-...+-.. ..... +.+++.+++.+.. .++|| ..||.
T Consensus 160 Vi~LG~~vp~e~iv~aa~--------e~~~d~VglS~l~t~~~~~~~~~---~~~i~~L~~~g~~---~~i~v--ivGG~ 223 (262)
T 1xrs_B 160 AYNLGSQVANEDFIKKAV--------ELEADVLLVSQTVTQKNVHIQNM---THLIELLEAEGLR---DRFVL--LCGGP 223 (262)
T ss_dssp EEECCSSBCHHHHHHHHH--------HTTCSEEEEECCCCTTSHHHHHH---HHHHHHHHHTTCG---GGSEE--EEECT
T ss_pred EEECCCCCCHHHHHHHHH--------HcCCCEEEEEeecCCccchHHHH---HHHHHHHHhcCCC---CCCEE--EEECC
Confidence 379999999998877733 23455666654222100 22222 6677777776410 12444 55665
Q ss_pred CHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 286 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
... .+..++. |.- .+|++-++..+.++..++...
T Consensus 224 ~~~--~~~a~~i----Gad-~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 224 RIN--NEIAKEL----GYD-AGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp TCC--HHHHHTT----TCS-EEECTTCCHHHHHHHHHHHHH
T ss_pred cCC--HHHHHHc----CCe-EEECCchHHHHHHHHHHHHHH
Confidence 433 2345554 865 456666677777777776553
No 118
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=32.91 E-value=1.6e+02 Score=25.02 Aligned_cols=91 Identities=9% Similarity=-0.028 Sum_probs=50.8
Q ss_pred CcEEEEEcCCcHH------HHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Gla------m~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
++|++++.-.+.. -...+.+..+ |.+.....-.-++.+.+.-+++++-+++ +.|+.++|+. .
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 194 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFC-------G 194 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHC--CCCCChHHeEeCCCCHHHHHHHHHHHHh---CCCCCCEEEE-------C
Confidence 5788875332211 1134666664 4433211123345566666666666665 2578888763 1
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCC
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPN 286 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~ 286 (329)
++.+| .++++++++.+ .++| .|+...+..
T Consensus 195 ~d~~a---~g~~~al~~~G-----~~vP~di~vvg~d~~~ 226 (289)
T 1dbq_A 195 GDIMA---MGALCAADEMG-----LRVPQDVSLIGYDNVR 226 (289)
T ss_dssp CHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCT
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEeeCCch
Confidence 36777 89999999886 2333 345566654
No 119
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=32.69 E-value=1.9e+02 Score=24.46 Aligned_cols=115 Identities=8% Similarity=0.055 Sum_probs=64.1
Q ss_pred CcEEEEEcCC-c-----HHH-----HHHHHHhccCCCCCCC-ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe
Q 020234 176 GRIWTMVAGG-G-----ASV-----IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI 243 (329)
Q Consensus 176 g~I~ii~NG~-G-----lam-----~t~D~l~~~g~gg~pa-N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i 243 (329)
.+|++++.-. + .+. -..+.+..+ |-+.. .++ ..++.+.+.-+++++-+++ +.|+.++++.
T Consensus 115 ~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-- 186 (276)
T 2h0a_A 115 PIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEA--GRPFSPDRL-YITRHSQEGGRLALRHFLE---KASPPLNVFA-- 186 (276)
T ss_dssp CEEEEEECCSCCC---CCHHHHHHHHHHHHHHHT--TCCCCGGGE-EEECSSHHHHHHHHHHHHT---TCCSSEEEEC--
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHHHHHc--CCCCChHHe-eecCCChHHHHHHHHHHHh---CCCCCCEEEE--
Confidence 5788886543 3 111 134667664 44432 222 2345566766677666665 2567787762
Q ss_pred ccccCchHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHH
Q 020234 244 GGGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 320 (329)
Q Consensus 244 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~ 320 (329)
.++.+| .|+++++++.+ .++| .|+...+..... .+. +.+ + ..++.+..+.
T Consensus 187 -----~~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~~~---~~~-------ltt-v---~~~~~~~g~~ 239 (276)
T 2h0a_A 187 -----GADQVA---LGVLEEAVRLG-----LTPGRDVRVLGFDGHPFAE---EAG-------LST-I---AQPVEAMGAR 239 (276)
T ss_dssp -----SSHHHH---HHHHHHHHTTS-----CTTTTSEEEEEESCCTHHH---HHT-------CEE-E---ECCHHHHHHH
T ss_pred -----CCcHHH---HHHHHHHHHcC-----CCCCCCeEEEEeCCCchhh---hcc-------eeE-e---cCCHHHHHHH
Confidence 236777 89999999886 3334 345577765321 221 222 2 4466666666
Q ss_pred HHHHh
Q 020234 321 AIDCI 325 (329)
Q Consensus 321 ~v~~~ 325 (329)
+++++
T Consensus 240 a~~~l 244 (276)
T 2h0a_A 240 AAQLL 244 (276)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 120
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=31.89 E-value=2.1e+02 Score=24.47 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=64.9
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCC-ceeeccCCCCHHHHHHHHHHHhcccccCC-CCCEEEEEecccc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADP-DGRKRALLIGGGI 247 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~pa-N~lDlgG~a~~e~~~~a~~ill~~~~~~~-~v~~vlv~i~ggi 247 (329)
++|++++.-.+... -..+.+..+ |-+.. .++ +.++.+.+.-+++++-+++. +.| +.++|+.
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~--~~~~~~~ai~~------ 194 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTA--QLPIETGYI-LRGEGTFEVGRAMTLHLLDL--SPERRPTAIMT------ 194 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGE-EECCSSHHHHHHHHHHHHTS--CTTTSCSEEEE------
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhE-EeCCCCHHHHHHHHHHHHhh--CCCCCCcEEEE------
Confidence 67998865433211 123666664 44432 222 23556667666666655530 156 7888863
Q ss_pred CchHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHH
Q 020234 248 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 324 (329)
Q Consensus 248 ~~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~ 324 (329)
.++.+| .|+++++++.+ .++| -|+...+.... +.+. -.+.+ + ..++.+..+.++++
T Consensus 195 -~~d~~a---~g~~~al~~~G-----~~vP~di~vig~d~~~~~---~~~~-----p~ltt-v---~~~~~~~g~~a~~~ 253 (287)
T 3bbl_A 195 -LNDTMA---IGAMAAARERG-----LTIGTDLAIIGFDDAPMV---QYLF-----PPLSS-V---RQPIAEAGRKCIEL 253 (287)
T ss_dssp -SSHHHH---HHHHHHHHHTT-----CCBTTTBEEEEESCCTTG---GGSS-----SCCEE-E---ECCHHHHHHHHHHH
T ss_pred -CCcHHH---HHHHHHHHHcC-----CCCCCCEEEEEECCchHh---hccC-----CCCce-E---cCCHHHHHHHHHHH
Confidence 136777 89999999886 3334 35566665421 1111 14433 2 45677766666665
Q ss_pred h
Q 020234 325 I 325 (329)
Q Consensus 325 ~ 325 (329)
+
T Consensus 254 l 254 (287)
T 3bbl_A 254 L 254 (287)
T ss_dssp H
T ss_pred H
Confidence 4
No 121
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.75 E-value=1.2e+02 Score=27.01 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=68.4
Q ss_pred CcEEEEEcCC--cHHH-----HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC
Q 020234 176 GRIWTMVAGG--GASV-----IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248 (329)
Q Consensus 176 g~I~ii~NG~--Glam-----~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~ 248 (329)
.+|++++... .... -..+.+..+ |-.+....-+.++.+.+.-+++++-+|+ +.|+.++|+.
T Consensus 186 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 253 (344)
T 3kjx_A 186 RRIGFMGTKMPLDYRARKRFEGFTEVLGKN--GVEIEDREFYSGGSALAKGREMTQAMLE---RSPDLDFLYY------- 253 (344)
T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHT--TCCCSCEEECSSCCCHHHHHHHHHHHHH---HSTTCCEEEE-------
T ss_pred CeEEEEecCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHh---cCCCCCEEEE-------
Confidence 4688886543 1111 133666664 4444333334577777777777766665 2678888872
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++.+| -|+++++++.+ .++| -|+...+... .+.. .-.+.+. ..++.+..+.+++++
T Consensus 254 ~nd~~A---~g~~~al~~~g-----~~vP~disvvg~D~~~~-------~~~~-~p~lttv----~~~~~~~g~~av~~l 313 (344)
T 3kjx_A 254 SNDMIA---AGGLLYLLEQG-----IDIPGQIGLAGFNNVEL-------LQGL-PRKLATM----DACRLEIGRKAAEII 313 (344)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CCTTTTCEEECSBCCGG-------GGGS-SSCCBEE----BCCHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcC-----CCCCCceEEEEECChHH-------Hhcc-CCCccEE----eCCHHHHHHHHHHHH
Confidence 237777 99999999986 3444 3444555431 1110 0134332 567787777777665
No 122
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=31.65 E-value=2.3e+02 Score=24.15 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhcCc
Q 020234 85 GDFIMGVFAVFQDLDF 100 (329)
Q Consensus 85 ~~il~~L~~~f~e~d~ 100 (329)
.+++..+-+...+...
T Consensus 29 ~~~~~gi~~~a~~~g~ 44 (292)
T 3k4h_A 29 PEVIRGISSFAHVEGY 44 (292)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4445555555555544
No 123
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=30.89 E-value=39 Score=37.09 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=19.8
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCCCeEE
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLGCTIS 37 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii 37 (329)
..++||++++..+|+.+.+..|+.+.++.
T Consensus 214 ~~vlVEefI~gg~EisV~vl~D~~G~vv~ 242 (1165)
T 2qf7_A 214 DEVYLEKLVERARHVESQILGDTHGNVVH 242 (1165)
T ss_dssp ------CCCSSEEEEEEEEEECTTSCEEE
T ss_pred CcEEEEEeccCCcEEEEEEEEcCCCcEEE
Confidence 46899999998899999999998876653
No 124
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=30.71 E-value=2.5e+02 Score=23.97 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred CcEEEEEcCCcHHHH------HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam~------t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
++|++++.-.+.... ..+.+..+ |- ..-.-+.++.+.+.-+++++-+++ +.|+.++|+ ..
T Consensus 139 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~--~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~-------~~ 204 (293)
T 2iks_A 139 ETVLYLGALPELSVSFLREQGFRTAWKDD--PR--EVHFLYANSYEREAAAQLFEKWLE---THPMPQALF-------TT 204 (293)
T ss_dssp SSEEEEEECTTSHHHHHHHHHHHHHHTTC--CC--CEEEEEESSSCHHHHHHHHHHHTT---TSCCCSEEE-------ES
T ss_pred CEEEEEecCcccccHHHHHHHHHHHHHHc--CC--CccEEEcCCCChhhHHHHHHHHHh---cCCCCCEEE-------EC
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH 277 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p 277 (329)
++.+| .|+++++++.+ .++|
T Consensus 205 ~d~~a---~g~~~al~~~g-----~~vP 224 (293)
T 2iks_A 205 SFALL---QGVMDVTLRRD-----GKLP 224 (293)
T ss_dssp SHHHH---HHHHHHHHHHH-----SSCC
T ss_pred ChHHH---HHHHHHHHHcC-----CCCC
No 125
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=30.38 E-value=62 Score=24.37 Aligned_cols=41 Identities=7% Similarity=-0.096 Sum_probs=29.8
Q ss_pred EEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHH
Q 020234 240 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 295 (329)
Q Consensus 240 lv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~ 295 (329)
.+.-|....++ +.|++++++ +.||++-|.+-..+.|++++.
T Consensus 8 vv~~P~sy~Da-------~~I~d~Lr~--------~~~VvvNL~~ld~~~AqRivD 48 (87)
T 3p04_A 8 VPVELHSFEDA-------QVIGGAFRD--------GDAVVFDMSLLSREEARRIVD 48 (87)
T ss_dssp EEEECSSGGGH-------HHHHHHHHT--------TCCEEEECTTSCHHHHHHHHH
T ss_pred EEEecCcHHHH-------HHHHHHHHC--------CCEEEEECCCCCHHHHHHHHH
Confidence 34447655443 556667765 478999999999999999985
No 126
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=30.32 E-value=3.1e+02 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+|+++.|. |+| ++.+. +.|.++..++ -+|++.-|||.+
T Consensus 238 ~p~vd~I~---FTG---S~~~G---~~i~~~aa~~-------lk~v~lELGGk~ 275 (528)
T 3u4j_A 238 DPNVDMVA---FTG---SVRVG---TKLGEIAART-------VKRVGLELGGKG 275 (528)
T ss_dssp CTTCCEEE---EES---CHHHH---HHHHHHHHTT-------TCEEEEECCCCE
T ss_pred CCCcCEEE---EeC---CHHHH---HHHHHHHHhc-------CCceEEecCCCC
Confidence 78877554 333 24455 6666654433 367777788854
No 127
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=30.29 E-value=76 Score=31.93 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHhcccccCCCCCEEEEEe--cc-c-cCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 020234 214 PNEEEVLQYARVVIDCATADPDGRKRALLI--GG-G-IANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 289 (329)
Q Consensus 214 a~~e~~~~a~~ill~~~~~~~~v~~vlv~i--~g-g-i~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ 289 (329)
.+.+.+.++++-..+ |+++++|++.+ || | .+.+ +.|-+++++.+. ..+|+++...+ +..
T Consensus 70 ~~~~~i~~~L~~a~~----d~~ik~I~L~inspGgG~v~~~-------~~I~~~i~~~k~----~gkpvva~~~~--aas 132 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKD----DRNITGIVMDLKNFAGGDQPSM-------QYIGKALKEFRD----SGKPVYAVGEN--YSQ 132 (593)
T ss_dssp EEHHHHHHHHHHHHH----CTTCCCEEEECTEEEECCHHHH-------HHHHHHHHHHHH----TTCCEEEEESC--EEH
T ss_pred cCHHHHHHHHHHHHh----CCCceEEEEEeCCCCCCcHHHH-------HHHHHHHHHHHh----cCCeEEEEEcc--chh
Confidence 467778888877777 99999999988 66 3 2222 566667777653 35888876432 334
Q ss_pred HHHHHH
Q 020234 290 GLAKMR 295 (329)
Q Consensus 290 ar~~l~ 295 (329)
+--+|.
T Consensus 133 ~~y~lA 138 (593)
T 3bf0_A 133 GQYYLA 138 (593)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 434444
No 128
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=29.51 E-value=2.2e+02 Score=25.80 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=44.9
Q ss_pred HHHHHhccCCCCCCCceeeccCCC------CHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc------hHHHhhhHH
Q 020234 191 YADTVGDLGYASELGNYAEYSGAP------NEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN------FTDVATTFN 258 (329)
Q Consensus 191 t~D~l~~~g~gg~paN~lDlgG~a------~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~------~~~vA~~~~ 258 (329)
..+.+... +.+..=.+.++++. ..+.+.++++.+- +..+++-+|+..-.++ ..+.. .
T Consensus 123 ~~~~~~~~--~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~------~g~d~iein~~sP~~~g~~~~~~~~~~---~ 191 (336)
T 1f76_A 123 LVENVKKA--HYDGVLGINIGKNKDTPVEQGKDDYLICMEKIY------AYAGYIAINISSPNTPGLRTLQYGEAL---D 191 (336)
T ss_dssp HHHHHHHC--CCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHG------GGCSEEEEECCCSSSTTGGGGGSHHHH---H
T ss_pred HHHHHHhc--ccCCcEEEEecCCCCCcccccHHHHHHHHHHHh------ccCCEEEEEccCCCCCCcccccCHHHH---H
Confidence 44666554 21211223455543 2678888877653 2678888887322222 01222 4
Q ss_pred HHHHHHHHhhhhh---hcccceEEEEeCCC
Q 020234 259 GIIRALREKESKL---KAARMHIFVRRGGP 285 (329)
Q Consensus 259 gii~al~~~~~~~---~~~~~pvvvrl~G~ 285 (329)
.+++++++..+.. .+.++||++++...
T Consensus 192 ~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~ 221 (336)
T 1f76_A 192 DLLTAIKNKQNDLQAMHHKYVPIAVKIAPD 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCEEEECCSC
T ss_pred HHHHHHHHHHHhhhhcccccCceEEEecCC
Confidence 5666666653110 01268999997654
No 129
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=29.45 E-value=77 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.286 Sum_probs=32.6
Q ss_pred CCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEe---CCCCHHHHHHHHH
Q 020234 233 DPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR---GGPNYQTGLAKMR 295 (329)
Q Consensus 233 ~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl---~G~~~~~ar~~l~ 295 (329)
++++++|++-+ |||... - +..|.+.++. .++||++.+ +|.-...|--++-
T Consensus 36 ~~~~~~Ivl~inspGG~v~---~---~~~i~~~i~~-------~~~PVia~v~p~~G~AasaG~~ia~ 90 (230)
T 3viv_A 36 QDNAEAIIIELDTPGGRAD---A---MMNIVQRIQQ-------SKIPVIIYVYPPGASAASAGTYIAL 90 (230)
T ss_dssp HTTCSEEEEEEEBSCEEHH---H---HHHHHHHHHT-------CSSCEEEEECSTTCEEETHHHHHHH
T ss_pred cCCCCEEEEEEeCCCcCHH---H---HHHHHHHHHh-------CCCCEEEEEecCCCEEhHHHHHHHH
Confidence 34688888755 887432 1 2566676664 368999998 7776666655554
No 130
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=29.29 E-value=3e+02 Score=24.36 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhcccccCCCCCEEEEEe-ccccCchHHHhhhHHHHHHHHHHhh
Q 020234 212 GAPNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTDVATTFNGIIRALREKE 268 (329)
Q Consensus 212 G~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i-~ggi~~~~~vA~~~~gii~al~~~~ 268 (329)
-+.+++.+.+.++..++. =|+..++ -|| .+.+|...+.. +-+.+.+++++
T Consensus 78 ~~~s~~ei~~~l~~al~~---vP~a~Gv-nNHmGS~~T~~~~~m---~~vm~~l~~~g 128 (245)
T 2nly_A 78 SNLSVGEVKSRVRKAFDD---IPYAVGL-NNHMGSKIVENEKIM---RAILEVVKEKN 128 (245)
T ss_dssp TTCCHHHHHHHHHHHHHH---STTCCEE-EEEECTTGGGCHHHH---HHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHH---CCCcEEE-ecccccchhcCHHHH---HHHHHHHHHCC
Confidence 367888899998888873 5777665 578 55566545555 78888887753
No 131
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=29.16 E-value=2.2e+02 Score=26.46 Aligned_cols=76 Identities=11% Similarity=-0.008 Sum_probs=46.8
Q ss_pred eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEec-----ccc---CchHHHhhhHHHHHHHHHHhhhhhhcccceEE
Q 020234 208 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-----GGI---ANFTDVATTFNGIIRALREKESKLKAARMHIF 279 (329)
Q Consensus 208 lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~-----ggi---~~~~~vA~~~~gii~al~~~~~~~~~~~~pvv 279 (329)
+.++| .+++.|.++++.+-+ .+-.+++-||+. |+. .+. +.. ..|++++++. .++||+
T Consensus 133 vsI~g-~~~~d~~~~a~~l~~----~g~~d~ielNisCPn~~G~~~l~~~~-e~l---~~il~av~~~------~~~PV~ 197 (345)
T 3oix_A 133 LSLVG-MSPEETHTILXMVEA----SKYQGLVELNLSCPNVPGXPQIAYDF-ETT---DQILSEVFTY------FTKPLG 197 (345)
T ss_dssp EEECC-SSHHHHHHHHHHHHH----SSCCSEEEEECSCCCSTTCCCGGGCH-HHH---HHHHHHHTTT------CCSCEE
T ss_pred EEecC-CCHHHHHHHHHHHhc----cCCCcEEEEecCCCCcCCchhhcCCH-HHH---HHHHHHHHHH------hCCCeE
Confidence 34555 568889999998764 333348889973 221 111 223 5666666654 468999
Q ss_pred EEeC-CCCHHHHHHHHHHhc
Q 020234 280 VRRG-GPNYQTGLAKMRALG 298 (329)
Q Consensus 280 vrl~-G~~~~~ar~~l~~~~ 298 (329)
+++. +.+..+-.+++.+++
T Consensus 198 vKi~p~~~~~~~a~~~~~ag 217 (345)
T 3oix_A 198 IKLPPYFDIVHFDQAAAIFN 217 (345)
T ss_dssp EEECCCCCHHHHHHHHHHHT
T ss_pred EEECCCCCHHHHHHHHHHhC
Confidence 9954 456666566666653
No 132
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=29.02 E-value=1.8e+02 Score=31.37 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=20.1
Q ss_pred cEEEEeecCCCCceEEEEEEEeCCC
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRLG 33 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~~ 33 (329)
..++||++++..+|+.+.+..|..+
T Consensus 748 ~~vlvEefI~g~~E~~V~~l~d~~~ 772 (1073)
T 1a9x_A 748 APVLLDHFLDDAVEVDVDAICDGEM 772 (1073)
T ss_dssp ---EEEBCCTTCEEEEEEEEECSSC
T ss_pred CcEEEEEccCCCcEEEEEEEEECCe
Confidence 5799999999888999999998755
No 133
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.90 E-value=2.1e+02 Score=24.66 Aligned_cols=16 Identities=6% Similarity=-0.099 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhcCc
Q 020234 85 GDFIMGVFAVFQDLDF 100 (329)
Q Consensus 85 ~~il~~L~~~f~e~d~ 100 (329)
.+++..+-+...+...
T Consensus 26 ~~~~~gi~~~a~~~g~ 41 (294)
T 3qk7_A 26 LEMISWIGIELGKRGL 41 (294)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4455555555555544
No 134
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=28.82 E-value=4.1e+02 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+|+++.|. |+| ++.+. +.|.++..++ -+|+..-|||.+
T Consensus 247 ~p~vd~V~---FTG---S~~vG---~~i~~~aa~~-------l~~v~lELGGk~ 284 (520)
T 3ed6_A 247 HKEVDLVS---FTG---GIETG---KHIMKNAANN-------VTNIALELGGKN 284 (520)
T ss_dssp CTTCSEEE---EES---CHHHH---HHHHHHHHTT-------TCEEEEECCCCC
T ss_pred CCCcCEEE---EEC---CHHHH---HHHHHHhhhc-------CCCEEEEcCCCC
Confidence 88888554 333 24555 6665544332 367888888854
No 135
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=28.45 E-value=1.5e+02 Score=26.32 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=56.3
Q ss_pred EcCCcHHHHHHHHHhccC---CCCCCCceeeccCCCCH----HHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHh
Q 020234 182 VAGGGASVIYADTVGDLG---YASELGNYAEYSGAPNE----EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA 254 (329)
Q Consensus 182 ~NG~Glam~t~D~l~~~g---~gg~paN~lDlgG~a~~----e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA 254 (329)
++--..+-++++.|...| .+|...+.+=++|.... +++....+.+-+ .+..+.+ ....+.. +.+...
T Consensus 120 ~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~----~~~~~~~-~~~~~~~-~~~~~~ 193 (350)
T 3h75_A 120 GDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAE----HPQVHLR-QLVYGEW-NRERAY 193 (350)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHH----CTTEEEE-EEEECTT-CHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH----CCCeEEE-EEeeCCC-cHHHHH
Confidence 333445566777777752 01334566667666532 344444444433 4443222 2223332 222222
Q ss_pred hhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCc----eeecCCCCCHHHHHHHH
Q 020234 255 TTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP----LEVYGPEATMTGICKQA 321 (329)
Q Consensus 255 ~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip----~~~~g~~~~~~~av~~~ 321 (329)
+.+.+.++.. .+.-.+++........+.+.+++. |+. +.+.| ++....+++..
T Consensus 194 ---~~~~~~L~~~------~~~~aI~~~~d~~a~g~~~al~~~----G~~vP~di~vvg-~d~~~~~l~~~ 250 (350)
T 3h75_A 194 ---RQAQQLLKRY------PKTQLVWSANDEMALGAMQAAREL----GRKPGTDLLFSG-VNSSPEALQAL 250 (350)
T ss_dssp ---HHHHHHHHHC------TTEEEEEESSHHHHHHHHHHHHHT----TCCBTTTBEEEE-ESCCHHHHHHH
T ss_pred ---HHHHHHHHhC------CCcCEEEECChHHHHHHHHHHHHc----CCCCCCCeEEEe-cCCCHHHHHHH
Confidence 4444444443 123345555544445566667776 643 55566 44555554433
No 136
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=28.43 E-value=2e+02 Score=22.14 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=62.3
Q ss_pred cCCCcEEEEEcCCcHHHHHHHHHhccCCCCCC---------------CceeeccCCCCHHHHHHHHHHHhcccccCCCCC
Q 020234 173 NPKGRIWTMVAGGGASVIYADTVGDLGYASEL---------------GNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 237 (329)
Q Consensus 173 ~l~g~I~ii~NG~Glam~t~D~l~~~g~gg~p---------------aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~ 237 (329)
.+.++|.+++.|. .+......|... |-+. .++--+-|+++.+.+-+.+ . -.+.+
T Consensus 5 ~~~~~viIiG~G~-~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a----~----i~~ad 73 (140)
T 3fwz_A 5 DICNHALLVGYGR-VGSLLGEKLLAS--DIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLA----H----LECAK 73 (140)
T ss_dssp CCCSCEEEECCSH-HHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHT----T----GGGCS
T ss_pred cCCCCEEEECcCH-HHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhc----C----cccCC
Confidence 3567888876644 777778888775 4441 1222234555443322211 1 12344
Q ss_pred EEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHH
Q 020234 238 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 317 (329)
Q Consensus 238 ~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~a 317 (329)
.+++-.+. ++.. .-++..+++.. ...++++|.... +-.+.|+++ |+...+ ....++
T Consensus 74 ~vi~~~~~-----~~~n---~~~~~~a~~~~-----~~~~iiar~~~~---~~~~~l~~~----G~d~vi----~p~~~~ 129 (140)
T 3fwz_A 74 WLILTIPN-----GYEA---GEIVASARAKN-----PDIEIIARAHYD---DEVAYITER----GANQVV----MGEREI 129 (140)
T ss_dssp EEEECCSC-----HHHH---HHHHHHHHHHC-----SSSEEEEEESSH---HHHHHHHHT----TCSEEE----EHHHHH
T ss_pred EEEEECCC-----hHHH---HHHHHHHHHHC-----CCCeEEEEECCH---HHHHHHHHC----CCCEEE----CchHHH
Confidence 44433332 2222 33445566654 356799998663 344677776 987654 234456
Q ss_pred HHHHHHHh
Q 020234 318 CKQAIDCI 325 (329)
Q Consensus 318 v~~~v~~~ 325 (329)
++...+..
T Consensus 130 a~~i~~~l 137 (140)
T 3fwz_A 130 ARTMLELL 137 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66555554
No 137
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=28.42 E-value=58 Score=30.53 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.7
Q ss_pred cEEEEeecCCCCceEEEEEEEeCC
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRL 32 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~ 32 (329)
..++|||+++ .+|+.+.+..|..
T Consensus 180 ~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 180 ASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp SSEEEEECCC-SEEEEEEEEEETT
T ss_pred CeEEEEECCc-CcEEEEEEEEcCC
Confidence 5799999999 7899999888754
No 138
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.34 E-value=2.1e+02 Score=24.61 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=19.9
Q ss_pred EcCCcHHHHHHHHHhccCCCCCCCceeeccCCCC
Q 020234 182 VAGGGASVIYADTVGDLGYASELGNYAEYSGAPN 215 (329)
Q Consensus 182 ~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~ 215 (329)
++--..+-++++.|... |+...+..=++|...
T Consensus 110 ~D~~~~g~~a~~~l~~~--g~~~~~i~~i~g~~~ 141 (297)
T 3rot_A 110 SDNLLAGKKLGEKALEL--TPSAKRALVLNPQPG 141 (297)
T ss_dssp CCHHHHHHHHHHHHHHH--CTTCCEEEEEESCTT
T ss_pred cChHHHHHHHHHHHHHh--cCCCceEEEEeCCCC
Confidence 44445566777888776 544566666666654
No 139
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=27.49 E-value=2.9e+02 Score=23.59 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=64.6
Q ss_pred cEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCC--CCCEEEEEeccccC
Q 020234 177 RIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADP--DGRKRALLIGGGIA 248 (329)
Q Consensus 177 ~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~--~v~~vlv~i~ggi~ 248 (329)
+|++++.-.+... ...+.+..+ |.+...-.-.-++.+.+.-+++++-+|+ +.| ++++|+.
T Consensus 142 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ai~~------- 209 (309)
T 2fvy_A 142 QFVLLKGEPGHPDAEARTTYVIKELNDK--GIKTEQLQLDTAMWDTAQAKDKMDAWLS---GPNANKIEVVIA------- 209 (309)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHHHT--TCCEEEEEEEECTTCHHHHHHHHHHHHT---STTGGGCCEEEE-------
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHHhc--CCceEEEEEecCCCCHHHHHHHHHHHHH---hCCCCCccEEEE-------
Confidence 5787764333221 123666664 4332111122456677777777777775 134 7788763
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCc-eeecCCCCCHHHHHHHHHHHh
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP-LEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip-~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++.+| .|+++++++.+. .+++| +...+ ...+...+.+ |-+ +.+ ..++.+..+.+++++
T Consensus 210 ~~d~~a---~g~~~al~~~g~----~di~v-ig~d~--~~~~~~~~~~-----g~~lttv---~~~~~~~g~~a~~~l 269 (309)
T 2fvy_A 210 NNDAMA---MGAVEALKAHNK----SSIPV-FGVDA--LPEALALVKS-----GALAGTV---LNDANNQAKATFDLA 269 (309)
T ss_dssp SSHHHH---HHHHHHHHHTTC----TTSCE-ECSBC--CHHHHHHHHH-----TSSCBEE---ECCHHHHHHHHHHHH
T ss_pred CCchhH---HHHHHHHHHcCC----CCceE-EecCC--CHHHHHHHHc-----CCceEEE---ecCHHHHHHHHHHHH
Confidence 236777 899999999861 14554 33444 3455555543 322 222 456777666666654
No 140
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=27.36 E-value=1.8e+02 Score=21.24 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=37.2
Q ss_pred CCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHH
Q 020234 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMT 315 (329)
Q Consensus 236 v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~ 315 (329)
.+.++++. +++...+..+. ..+....++... ....+. +.|.+ ..-+++|+.+.-..-+++ ++|.+
T Consensus 43 ~~~vvlDl-s~v~~iDssgl--~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~l~~~gl~~~~~i-----~~~~~ 107 (116)
T 1th8_B 43 IRHIVLNL-GQLTFMDSSGL--GVILGRYKQIKN----VGGQMV--VCAVS-PAVKRLFDMSGLFKIIRV-----EADEQ 107 (116)
T ss_dssp CCEEEEEE-EEEEEECHHHH--HHHHHHHHHHHH----TTCCEE--EESCC-HHHHHHHHHHTGGGTSEE-----ESSHH
T ss_pred CcEEEEEC-CCCcEEccHHH--HHHHHHHHHHHH----hCCeEE--EEeCC-HHHHHHHHHhCCceeEEE-----eCCHH
Confidence 45555554 55555554442 555555554432 234443 34444 456777877621112333 67999
Q ss_pred HHHHHH
Q 020234 316 GICKQA 321 (329)
Q Consensus 316 ~av~~~ 321 (329)
+|++.+
T Consensus 108 ~Al~~~ 113 (116)
T 1th8_B 108 FALQAL 113 (116)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998653
No 141
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=27.22 E-value=1.8e+02 Score=21.53 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHH
Q 020234 215 NEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 294 (329)
Q Consensus 215 ~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l 294 (329)
+.+.+.+.+.-++. +.. .++++ ++++...+-.+ ...++...++... ...++.+ .|.+ ..-+++|
T Consensus 27 ~~~~l~~~l~~~~~----~~~--~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~~l~l--~~~~-~~v~~~l 90 (117)
T 4hyl_A 27 SSPAVQAAVLPRVT----AKG--KMILD-LREVSYMSSAG--LRVLLSLYRHTSN----QQGALVL--VGVS-EEIRDTM 90 (117)
T ss_dssp SHHHHHHHHGGGCC----TTC--EEEEE-EEEEEEECHHH--HHHHHHHHHHHHH----TTCEEEE--ECCC-HHHHHHH
T ss_pred hHHHHHHHHHHHHc----cCC--eEEEE-CCCCcEEcHHH--HHHHHHHHHHHHH----cCCEEEE--EeCC-HHHHHHH
Confidence 44555555444333 332 33333 55566555544 2455555554432 2344443 3444 4567788
Q ss_pred HHhccccCCceeecCCCCCHHHHHHHH
Q 020234 295 RALGEELGIPLEVYGPEATMTGICKQA 321 (329)
Q Consensus 295 ~~~~~~~gip~~~~g~~~~~~~av~~~ 321 (329)
+-+ |+. .+|..++|.++|+..+
T Consensus 91 ~~~----gl~-~~~~i~~~~~~Al~~~ 112 (117)
T 4hyl_A 91 EIT----GFW-NFFTACASMDEALRIL 112 (117)
T ss_dssp HHH----TCG-GGCEEESCHHHHHHHH
T ss_pred HHh----Ccc-ceeeecCCHHHHHHHh
Confidence 776 653 1222378999998765
No 142
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=27.06 E-value=3.4e+02 Score=24.27 Aligned_cols=106 Identities=12% Similarity=0.028 Sum_probs=67.0
Q ss_pred eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 207 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 207 ~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..+++...+.. .. |++-.|+++
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~eE-r~~v~~~~~~~~-----~g--viaGvg~~~ 76 (293)
T 1w3i_A 10 PFTKDNRIDKEKLKIHAENLIR-----KGIDKLFVNGTTGLGPSLSPEE-KLENLKAVYDVT-----NK--IIFQVGGLN 76 (293)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHTTC-----SC--EEEECCCSC
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHc-----CC--EEEecCCCC
Confidence 4444578899999999998885 5899998876433222111110 145666655543 22 778899999
Q ss_pred HHHHHHHHHHhccccCCce-----eecCCC-CCHHHHHHHHHHHhhh
Q 020234 287 YQTGLAKMRALGEELGIPL-----EVYGPE-ATMTGICKQAIDCIMS 327 (329)
Q Consensus 287 ~~~ar~~l~~~~~~~gip~-----~~~g~~-~~~~~av~~~v~~~~~ 327 (329)
-+++.+..+.+ ++.|..- -.| .. .|.++.++.+-.++.+
T Consensus 77 t~~ai~la~~A-~~~Gadavlv~~P~y-~~~~s~~~l~~~f~~va~a 121 (293)
T 1w3i_A 77 LDDAIRLAKLS-KDFDIVGIASYAPYY-YPRMSEKHLVKYFKTLCEV 121 (293)
T ss_dssp HHHHHHHHHHG-GGSCCSEEEEECCCS-CSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCCC-CCCCCHHHHHHHHHHHHhh
Confidence 99998888776 3446321 012 13 4778888888777654
No 143
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.93 E-value=2.2e+02 Score=23.88 Aligned_cols=17 Identities=18% Similarity=-0.036 Sum_probs=10.1
Q ss_pred EcCCcHHHHHHHHHhcc
Q 020234 182 VAGGGASVIYADTVGDL 198 (329)
Q Consensus 182 ~NG~Glam~t~D~l~~~ 198 (329)
++-...+-.+++.|...
T Consensus 102 ~d~~~~~~~a~~~L~~~ 118 (272)
T 3o74_A 102 SDDRDASRQLAASLLSS 118 (272)
T ss_dssp ECHHHHHHHHHHHHHTT
T ss_pred EchHHHHHHHHHHHHHC
Confidence 44444555666777775
No 144
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.32 E-value=2.5e+02 Score=24.59 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=57.8
Q ss_pred cHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHH
Q 020234 186 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 265 (329)
Q Consensus 186 Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~ 265 (329)
|+-|+ ..++...|+ .-+|+|-+.+++.+.++++-. +|+ .|.+-.. .+....-. +.+++.++
T Consensus 139 G~~iv-a~~L~~~G~-----~Vi~LG~~vp~e~l~~~~~~~------~~d--~V~lS~l--~~~~~~~~---~~~i~~l~ 199 (258)
T 2i2x_B 139 GKNIV-TALLRANGY-----NVVDLGRDVPAEEVLAAVQKE------KPI--MLTGTAL--MTTTMYAF---KEVNDMLL 199 (258)
T ss_dssp HHHHH-HHHHHHTTC-----EEEEEEEECCSHHHHHHHHHH------CCS--EEEEECC--CTTTTTHH---HHHHHHHH
T ss_pred HHHHH-HHHHHHCCC-----EEEECCCCCCHHHHHHHHHHc------CCC--EEEEEee--ccCCHHHH---HHHHHHHH
Confidence 44443 356666432 346899999999887764432 444 4554432 22222222 66777787
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 266 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 266 ~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
+.+ .+.||++ ||....+. .-++ .|.- +| ..+..+|++.+.++.+
T Consensus 200 ~~~-----~~~~v~v--GG~~~~~~--~~~~----igad--~~--~~da~~av~~~~~l~~ 243 (258)
T 2i2x_B 200 ENG-----IKIPFAC--GGGAVNQD--FVSQ----FALG--VY--GEEAADAPKIADAIIA 243 (258)
T ss_dssp TTT-----CCCCEEE--ESTTCCHH--HHHT----STTE--EE--CSSTTHHHHHHHHHHT
T ss_pred hcC-----CCCcEEE--ECccCCHH--HHHH----cCCe--EE--ECCHHHHHHHHHHHHc
Confidence 764 3455555 55432221 1123 3643 33 4688899988887764
No 145
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=26.31 E-value=1.5e+02 Score=27.21 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHhccccCCcee
Q 020234 284 GPNYQTGLAKMRALGEELGIPLE 306 (329)
Q Consensus 284 G~~~~~ar~~l~~~~~~~gip~~ 306 (329)
|...++|.++|++.+++.|+|+.
T Consensus 70 Glg~~~GL~~L~~~~~e~Glp~~ 92 (288)
T 3tml_A 70 GLGMDEGLRILSEVKRQLGLPVL 92 (288)
T ss_dssp --CHHHHHHHHHHHHHHHCCCEE
T ss_pred CcCHHHHHHHHHHHHHhcCCeEE
Confidence 44468999999999999999963
No 146
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=26.29 E-value=3.5e+02 Score=24.13 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=65.8
Q ss_pred eeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 207 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 207 ~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
|++=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+.. .. |++-.|+++
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~-----~g--ViaGvg~~~ 76 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLE-----KGIDAIFVNGTTGLGPALSKDE-KRQNLNALYDVT-----HK--LIFQVGSLN 76 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHTTTC-----SC--EEEECCCSC
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh-----CC--eEEeeCCCC
Confidence 4444578889999999998885 5889988876433322211110 134555555442 12 778899999
Q ss_pred HHHHHHHHHHhccccCC-------ceeecCCC-CCHHHHHHHHHHHhhh
Q 020234 287 YQTGLAKMRALGEELGI-------PLEVYGPE-ATMTGICKQAIDCIMS 327 (329)
Q Consensus 287 ~~~ar~~l~~~~~~~gi-------p~~~~g~~-~~~~~av~~~v~~~~~ 327 (329)
-+++.+..+.+ ++.|. |. | .. .|.++.++.+-.++.+
T Consensus 77 t~~ai~la~~A-~~~Gadavlv~~P~--y-~~~~s~~~l~~~f~~va~a 121 (288)
T 2nuw_A 77 LNDVMELVKFS-NEMDILGVSSHSPY--Y-FPRLPEKFLAKYYEEIARI 121 (288)
T ss_dssp HHHHHHHHHHH-HTSCCSEEEECCCC--S-SCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCc--C-CCCCCHHHHHHHHHHHHHh
Confidence 99998888766 33452 22 2 13 4778888888777654
No 147
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=25.98 E-value=1.5e+02 Score=21.93 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=40.0
Q ss_pred CCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCH
Q 020234 235 DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATM 314 (329)
Q Consensus 235 ~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~ 314 (329)
..+.++++. +++...|..+ ...+....++... ....+. +.|.+ +.-+++|+.+ |+.-.+ .++|.
T Consensus 41 ~~~~vvlDl-s~v~~iDssg--l~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~l~~~----gl~~~~--i~~~~ 104 (117)
T 1h4x_A 41 AVTTIIWNF-ERLSFMDSSG--VGLVLGRMRELEA----VAGRTI--LLNPS-PTMRKVFQFS----GLGPWM--MDATE 104 (117)
T ss_dssp SCSEEEEEE-EEEEEECTHH--HHHHHHHHHHHHT----TTCEEE--EESCC-HHHHHHHHHT----TCGGGE--ECSCH
T ss_pred CCCEEEEEC-CCCcEechHH--HHHHHHHHHHHHH----cCCEEE--EEeCC-HHHHHHHHHh----CCceEE--EeCCH
Confidence 345554444 5555544433 2555555555432 234443 44544 4567788876 764322 47899
Q ss_pred HHHHHHHHH
Q 020234 315 TGICKQAID 323 (329)
Q Consensus 315 ~~av~~~v~ 323 (329)
++|+..+-+
T Consensus 105 ~~Al~~~~~ 113 (117)
T 1h4x_A 105 EEAIDRVRG 113 (117)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHH
Confidence 999876543
No 148
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=25.89 E-value=1.8e+02 Score=26.51 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhhcccceEEEEeCCC-CHHHHHHHHHHhccccCCceeecCCCCCHHHHHHH
Q 020234 258 NGIIRALREKESKLKAARMHIFVRRGGP-NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 320 (329)
Q Consensus 258 ~gii~al~~~~~~~~~~~~pvvvrl~G~-~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~ 320 (329)
+.+.+++..... .....++...|. +.+.-++.+++. +++++++++.++|.+....
T Consensus 197 ~~~~~al~~l~~----~~~~~vi~~~G~~~~~~~~~~~~~~----~~~~~v~~f~~dm~~~l~~ 252 (365)
T 3s2u_A 197 KLLPEALAQVPL----EIRPAIRHQAGRQHAEITAERYRTV----AVEADVAPFISDMAAAYAW 252 (365)
T ss_dssp HHHHHHHHTSCT----TTCCEEEEECCTTTHHHHHHHHHHT----TCCCEEESCCSCHHHHHHH
T ss_pred hhhHHHHHhccc----ccceEEEEecCccccccccceeccc----ccccccccchhhhhhhhcc
Confidence 667777766532 112234445554 445555555555 8888888877888776543
No 149
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=25.86 E-value=2.4e+02 Score=24.79 Aligned_cols=116 Identities=11% Similarity=0.141 Sum_probs=64.7
Q ss_pred CcEEEEEcCCcHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam------~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-.+... -..+.+..+ |-+.....-+.++.+.+.-+++++-+++ . +.++|+. .
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~ai~~-------~ 246 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEA--NIEFDENLVFEGNYSYEQGKALAERLLE----R-GATSAVV-------S 246 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEECSCCSHHHHHHHHHHHHH----T-TCCEEEE-------S
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCCHHHHHHHHHHHhc----c-CCCEEEE-------C
Confidence 57998864432211 134666664 4433221123456677777777777776 4 5677763 1
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| .|+++++++.+ .++| -|+...+... + +... -.+.+ + ..++.+..+.+++++
T Consensus 247 ~d~~A---~g~~~al~~~G-----~~vP~disvig~D~~~~--~-----~~~~-p~ltt-v---~~~~~~~g~~a~~~l 305 (332)
T 2o20_A 247 HDTVA---VGLLSAMMDKG-----VKVPEDFEIISGANSPI--T-----QYTY-PTLTS-V---NQPLYDLGAVAMRLL 305 (332)
T ss_dssp CHHHH---HHHHHHHHHTT-----CCTTTTCEEEESSCCGG--G-----GSBS-SCCEE-E---ECCHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC-----CCCccCEEEEEeCChHH--H-----hhCC-CceEE-E---eeCHHHHHHHHHHHH
Confidence 36777 89999999986 3344 3455655432 1 1111 13432 2 456777666666654
No 150
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=25.44 E-value=3e+02 Score=23.03 Aligned_cols=100 Identities=8% Similarity=-0.003 Sum_probs=56.6
Q ss_pred HHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhh
Q 020234 193 DTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLK 272 (329)
Q Consensus 193 D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~ 272 (329)
.++... |- +-.++|-+.+++.+.++++-. +|+ .|.+-.. .+....-. +.+++.+++.+..
T Consensus 110 ~~l~~~--G~---~v~~LG~~vp~~~l~~~~~~~------~~d--~v~lS~~--~~~~~~~~---~~~i~~l~~~~~~-- 169 (210)
T 1y80_A 110 MMLESG--GF---TVYNLGVDIEPGKFVEAVKKY------QPD--IVGMSAL--LTTTMMNM---KSTIDALIAAGLR-- 169 (210)
T ss_dssp HHHHHT--TC---EEEECCSSBCHHHHHHHHHHH------CCS--EEEEECC--SGGGTHHH---HHHHHHHHHTTCG--
T ss_pred HHHHHC--CC---EEEECCCCCCHHHHHHHHHHc------CCC--EEEEecc--ccccHHHH---HHHHHHHHhcCCC--
Confidence 455554 32 457899999999888774432 444 4554432 22222223 6677777775310
Q ss_pred cccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 273 AARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 273 ~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.+.||++.=.+.+.+ ..++. |.-.+ ..+..+|++.+-++.
T Consensus 170 -~~~~v~vGG~~~~~~----~~~~~----gad~~----~~da~~av~~~~~l~ 209 (210)
T 1y80_A 170 -DRVKVIVGGAPLSQD----FADEI----GADGY----APDAASATELCRQLL 209 (210)
T ss_dssp -GGCEEEEESTTCCHH----HHHHH----TCSEE----CSSHHHHHHHHHHHC
T ss_pred -CCCeEEEECCCCCHH----HHHHc----CCeEE----ECCHHHHHHHHHHHh
Confidence 246666653333322 22444 65543 679999998887764
No 151
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=25.05 E-value=2.4e+02 Score=24.97 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=67.5
Q ss_pred CcEEEEEcCCcHHHH------HHHHHhccCCCCCCCceeecc-CCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC
Q 020234 176 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYS-GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248 (329)
Q Consensus 176 g~I~ii~NG~Glam~------t~D~l~~~g~gg~paN~lDlg-G~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~ 248 (329)
.+|++++.-.+.... ..+.+..+ |-. ..+. ++.+.+.-+++++-+|+ +.| .++|+.
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~----~~~~~~~~~~~~~~~~~~~ll~---~~~-~~ai~~------- 237 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY--GAE----VTFHFGHYSVESGEEMAQVVFN---NGL-PDALIV------- 237 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCE----EEEEECCSSHHHHHHHHHHHHH---TCC-CSEEEE-------
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC--CCC----EEEecCCCCHHHHHHHHHHHhc---CCC-CcEEEE-------
Confidence 569998765433221 23666664 332 3334 67778877777777776 256 888873
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.++.+| -|+++++++.+ .++| -|+...+.... +.. .-++.+ + ..++.+..+.+++++
T Consensus 238 ~nd~~A---~g~~~al~~~G-----~~vP~disvig~D~~~~~-------~~~-~p~ltt-v---~~~~~~~g~~Av~~L 297 (333)
T 3jvd_A 238 ASPRLM---AGVMRAFTRLN-----VRVPHDVVIGGYDDPEWY-------SFV-GAGITT-F---VPPHEEMGKEAVRLL 297 (333)
T ss_dssp CCHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCGGG-------GGS-TTSCEE-E---ECCHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcC-----CCCCCceEEEEECChHHH-------Hhc-CCCceE-E---ecCHHHHHHHHHHHH
Confidence 237777 89999999986 3344 34556665421 111 014433 2 567788777777665
No 152
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=24.91 E-value=2.2e+02 Score=24.27 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhcCc
Q 020234 85 GDFIMGVFAVFQDLDF 100 (329)
Q Consensus 85 ~~il~~L~~~f~e~d~ 100 (329)
.+++..+-+...+...
T Consensus 28 ~~~~~gi~~~a~~~g~ 43 (289)
T 3g85_A 28 SRFLRGLQSKLAKQNY 43 (289)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3344444445444444
No 153
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.82 E-value=3.4e+02 Score=23.96 Aligned_cols=17 Identities=0% Similarity=0.098 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhcCc
Q 020234 84 IGDFIMGVFAVFQDLDF 100 (329)
Q Consensus 84 ~~~il~~L~~~f~e~d~ 100 (329)
+.+++..+-+...+...
T Consensus 79 ~~~~~~gi~~~a~~~g~ 95 (333)
T 3jvd_A 79 YSESLQTIQQDLKAAGY 95 (333)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 44555555555555554
No 154
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=24.71 E-value=4.1e+02 Score=24.34 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=57.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEec--ccc-----------------------------------
Q 020234 205 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGI----------------------------------- 247 (329)
Q Consensus 205 aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~--ggi----------------------------------- 247 (329)
.-...+..+.+.+.+.+.++-+-+ ||++++++|-.| .++
T Consensus 69 ~~~~~lp~~~s~~ell~~I~~lN~----d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~ 144 (300)
T 4a26_A 69 SFNVELPEDISQEVLEVNVEKLNN----DPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPF 144 (300)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC----CCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCC
Confidence 455678889999999999888888 999999998773 332
Q ss_pred CchHHHhhhHHHHHHHHHHhhhhhhcccceEE-EEeCCCCHHHHHHHHHHhccccCCceeec
Q 020234 248 ANFTDVATTFNGIIRALREKESKLKAARMHIF-VRRGGPNYQTGLAKMRALGEELGIPLEVY 308 (329)
Q Consensus 248 ~~~~~vA~~~~gii~al~~~~~~~~~~~~pvv-vrl~G~~~~~ar~~l~~~~~~~gip~~~~ 308 (329)
.+| |..|+++.++++.-.. ..+.++ +-.|+.--...-.+|... |..+.++
T Consensus 145 ~Pc-----Tp~gv~~lL~~~~i~l--~Gk~vvVIG~s~iVG~p~A~lL~~~----gAtVtv~ 195 (300)
T 4a26_A 145 TPC-----TAKGVIVLLKRCGIEM--AGKRAVVLGRSNIVGAPVAALLMKE----NATVTIV 195 (300)
T ss_dssp CCH-----HHHHHHHHHHHHTCCC--TTCEEEEECCCTTTHHHHHHHHHHT----TCEEEEE
T ss_pred CCC-----CHHHHHHHHHHcCCCC--CCCEEEEECCCchHHHHHHHHHHHC----CCeEEEE
Confidence 222 2378888888774221 234444 435554444444455544 7766664
No 155
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=24.45 E-value=3.3e+02 Score=23.25 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=39.3
Q ss_pred EEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHHhccccCC------c-eeecCC
Q 020234 239 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGI------P-LEVYGP 310 (329)
Q Consensus 239 vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-l~G~~~~~ar~~l~~~~~~~gi------p-~~~~g~ 310 (329)
.+|..|||+-..+|+. +++. +.+.+. +++||++- ..| -.+.=.+.|+...+ .|. . +++
T Consensus 120 a~IalPGG~GTldEl~---e~lt--~~qlg~----~~kPvvlln~~g-fw~~l~~~l~~~~~-~Gfi~~~~~~~i~~--- 185 (199)
T 3qua_A 120 AFIALPGGIGTLEEFF---EAWT--AGYLGM----HDKPLILLDPFG-HYDGLLTWLRGLVP-TGYVSQRAMDSLVV--- 185 (199)
T ss_dssp EEEECSCCHHHHHHHH---HHHH--HHHTTS----CCCCEEEECTTS-TTHHHHHHHHHTTT-TTSSCHHHHHTSEE---
T ss_pred ccEEeCCCccHHHHHH---HHHH--HHHhcc----CCCCEEEEcCCc-cchHHHHHHHHHHH-CCCCCHHHCCeEEE---
Confidence 3677799998888877 5442 334432 46898755 444 33444444443221 131 0 122
Q ss_pred CCCHHHHHHHH
Q 020234 311 EATMTGICKQA 321 (329)
Q Consensus 311 ~~~~~~av~~~ 321 (329)
.+|++|+++..
T Consensus 186 ~d~~~e~~~~l 196 (199)
T 3qua_A 186 VDNVEAALEAC 196 (199)
T ss_dssp ESSHHHHHHHH
T ss_pred eCCHHHHHHHH
Confidence 68999998764
No 156
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=24.37 E-value=3.7e+02 Score=26.15 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=24.4
Q ss_pred HHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 224 RVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 224 ~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+.+++ +|+++.|. |+| ++.+. +.|.++..+ +-+|++.-|||.+
T Consensus 219 ~~L~~----~p~vd~I~---FTG---S~~vG---~~i~~~aa~-------~l~~v~lElGGk~ 261 (506)
T 3rh9_A 219 KVLCE----HKDVPMLS---FTG---STEVG---RKLIVDTAE-------QVKKLALELGGNA 261 (506)
T ss_dssp HHHHH----CTTCCEEE---EES---CHHHH---HHHHHHTTT-------TTCEEEEECCCCC
T ss_pred HHHHh----CCCCCEEE---EEC---CHHHH---HHHHHHhhh-------cCCceEEecCCCC
Confidence 34555 78887554 333 24444 555554322 2477877788865
No 157
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=24.30 E-value=1.9e+02 Score=25.99 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=37.9
Q ss_pred EEEe-ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEE-------------eCCCCHHHHHHHHHHhccccCCce
Q 020234 240 ALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPL 305 (329)
Q Consensus 240 lv~i-~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr-------------l~G~~~~~ar~~l~~~~~~~gip~ 305 (329)
+|+. |-.+-+.+. + --+++.+++...+. ..++++-| -.|...++|+++|++.+++.|+|+
T Consensus 5 ~viaGPCsie~~~~-~---~~~A~~l~~~~~~~--~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~ 78 (267)
T 2nwr_A 5 LVIAGPNAIESEEL-L---LKVGEEIKRLSEKF--KEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKI 78 (267)
T ss_dssp EEEEECSBCSCHHH-H---HHHHHHHHHHHHHC--TTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEE
T ss_pred EEEEcCCCcCCHHH-H---HHHHHHHHHHHHhh--cCccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeE
Confidence 3444 777776443 3 34444555543321 14666655 234447999999999999999996
Q ss_pred e
Q 020234 306 E 306 (329)
Q Consensus 306 ~ 306 (329)
.
T Consensus 79 ~ 79 (267)
T 2nwr_A 79 T 79 (267)
T ss_dssp E
T ss_pred E
Confidence 3
No 158
>2pb9_A Phosphomethylpyrimidine kinase; phosphate, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.70A {Pyrococcus furiosus} SCOP: c.74.1.2
Probab=24.01 E-value=2.3e+02 Score=24.34 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.9
Q ss_pred eeecCCCCCHHHHHHHHHHHhhh
Q 020234 305 LEVYGPEATMTGICKQAIDCIMS 327 (329)
Q Consensus 305 ~~~~g~~~~~~~av~~~v~~~~~ 327 (329)
+++|| .++.+++++++++++.
T Consensus 169 i~vfG--~dp~ev~~kv~~l~~~ 189 (195)
T 2pb9_A 169 ILVFG--RNPREVLEKIKMLIEG 189 (195)
T ss_dssp EEEEE--SSHHHHHHHHHHTC--
T ss_pred EEEEC--CCHHHHHHHHHHHHhc
Confidence 45776 7999999999988753
No 159
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=23.93 E-value=2.8e+02 Score=24.65 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHhcccccCCCCC-EEEEEeccccC--------chHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 020234 213 APNEEEVLQYARVVIDCATADPDGR-KRALLIGGGIA--------NFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 283 (329)
Q Consensus 213 ~a~~e~~~~a~~ill~~~~~~~~v~-~vlv~i~ggi~--------~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~ 283 (329)
+.+.+.+.++++.+.+ -..+ ++-+|+..-.+ +.+. . ..+++++++. .++||++++.
T Consensus 102 g~~~~~~~~~a~~~~~-----~g~d~~iein~~~P~~~g~~~~g~~~e~-~---~~iv~~vr~~------~~~Pv~vKi~ 166 (311)
T 1jub_A 102 GMSAAENIAMLKKIQE-----SDFSGITELNLSCPNVPGEPQLAYDFEA-T---EKLLKEVFTF------FTKPLGVKLP 166 (311)
T ss_dssp CSSHHHHHHHHHHHHH-----SCCCSEEEEESCCCCSSSCCCGGGCHHH-H---HHHHHHHTTT------CCSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHh-----cCCCeEEEEeccCCCCCCcccccCCHHH-H---HHHHHHHHHh------cCCCEEEEEC
Confidence 3578889999998764 4578 88888731111 2222 2 4556666554 3689999976
Q ss_pred CC
Q 020234 284 GP 285 (329)
Q Consensus 284 G~ 285 (329)
..
T Consensus 167 ~~ 168 (311)
T 1jub_A 167 PY 168 (311)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 160
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=23.45 E-value=5.7e+02 Score=25.60 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=57.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
.-+|+|-+.+++.+.++++-. +|+ .|.+- +.++...+.. +.+++.+++.+ .++||++.=...
T Consensus 128 eVi~LG~~vP~e~iv~aa~~~------~~d--iVgLS--~l~t~~~~~m---~~~i~~Lr~~g-----~~i~ViVGGa~~ 189 (579)
T 3bul_A 128 EIVDLGVMVPAEKILRTAKEV------NAD--LIGLS--GLITPSLDEM---VNVAKEMERQG-----FTIPLLIGGATT 189 (579)
T ss_dssp EEEECCSSBCHHHHHHHHHHH------TCS--EEEEE--CCSTHHHHHH---HHHHHHHHHTT-----CCSCEEEESTTC
T ss_pred EEEECCCCCCHHHHHHHHHHc------CCC--EEEEE--ecCCCCHHHH---HHHHHHHHHcC-----CCCeEEEEcccc
Confidence 447999999999888774432 444 44443 3333333333 67777787754 467776654444
Q ss_pred CHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhh
Q 020234 286 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 326 (329)
Q Consensus 286 ~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~ 326 (329)
+.+.++..+.... .|-- +| ..+..+||+.+-++..
T Consensus 190 ~~~~a~~~i~p~~--~GAD--~y--a~DA~~Av~~a~~l~~ 224 (579)
T 3bul_A 190 SKAHTAVKIEQNY--SGPT--VY--VQNASRTVGVVAALLS 224 (579)
T ss_dssp CHHHHHHHTGGGC--SSCE--EE--CCSHHHHHHHHHHHTC
T ss_pred chhhhhhhhhhcc--cCCe--EE--ECCHHHHHHHHHHHhc
Confidence 5444432232111 1532 33 6799999999888764
No 161
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=23.41 E-value=5.2e+02 Score=25.16 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=22.7
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+|.++.|. |+| ++.+. +.|.++..++ .+|++.=|||.+
T Consensus 226 ~p~vd~I~---FTG---S~~~G---~~i~~~aa~~-------lk~v~lElGGk~ 263 (517)
T 3r31_A 226 HPDVAKVS---LTG---SVPTG---RKVAAAAAGH-------LKHVTMELGGKS 263 (517)
T ss_dssp CTTEEEEE---EES---CHHHH---HHHHHHHHHT-------TCEEEEECCCCE
T ss_pred CCCcCEEe---ccC---CHHHH---HHHHHHhhcC-------CCcEEEEcCCcC
Confidence 78877543 333 24555 6666655443 367777788854
No 162
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=23.29 E-value=1.2e+02 Score=25.91 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=35.8
Q ss_pred ccCchHHHhhhHHHHHHHHHHhhhhhhcccceEE-EEeCC---CCHHHHHHHHHHhccccCCceeec
Q 020234 246 GIANFTDVATTFNGIIRALREKESKLKAARMHIF-VRRGG---PNYQTGLAKMRALGEELGIPLEVY 308 (329)
Q Consensus 246 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvv-vrl~G---~~~~~ar~~l~~~~~~~gip~~~~ 308 (329)
...+|..-| ++|+++++++.. .+.-|+ .+.-. +...++.+.|+++ ||++.+.
T Consensus 90 TlePC~~Ca---~aIi~al~~~~g----I~rVV~~~~d~~~~~p~~~~g~~~L~~a----GI~V~~~ 145 (190)
T 2nyt_A 90 SSSPCAACA---DRIIKTLSKTKN----LRLLILVGRLFMWEEPEIQAALKKLKEA----GCKLRIM 145 (190)
T ss_pred EcChHHHHH---HHHHHhhhhcCC----ccEEEEEeecCCcCChHHHHHHHHHHHC----CCEEEEe
Confidence 456788888 999999988642 333344 34332 3456899999998 9998753
No 163
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=23.16 E-value=2.6e+02 Score=25.48 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=19.1
Q ss_pred cEEEEeecCCCCceEEEEEEEeCC
Q 020234 9 TTFIVEPFVPHNQEYYLSIVSDRL 32 (329)
Q Consensus 9 ~~vlVee~~~~~~E~Ylsi~~Dr~ 32 (329)
..++||++++ .+|+-+++.-|..
T Consensus 214 ~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 214 TEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp SEEEEEECCC-SEEEEEEEEESSS
T ss_pred CeEEEEEecC-CEEEEEEEEecCC
Confidence 5789999986 6899999888765
No 164
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=23.11 E-value=4.7e+02 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=21.7
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+|+++.|. |+| ++.+. +.|.++..+. -+|++.-|||.+
T Consensus 245 ~p~v~~V~---FTG---S~~~G---~~i~~~aa~~-------lk~v~lELGGk~ 282 (504)
T 3ek1_A 245 NDTVRKLS---FTG---STEVG---RLLMAQCAPT-------IKRISLELGGNA 282 (504)
T ss_dssp CTTCCEEE---EES---CHHHH---HHHHHHHGGG-------TCEEEEECCCCE
T ss_pred CCCcCEEE---EEC---CHHHH---HHHHHhhhhh-------cCCeEecCCCCC
Confidence 78887554 333 24444 5555543332 367777788854
No 165
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=23.09 E-value=1.6e+02 Score=26.83 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=37.4
Q ss_pred eeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe--ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 020234 208 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 285 (329)
Q Consensus 208 lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 285 (329)
+-++|..+.+......+.++.+-..++ .+.|++.| |||-.. -+ .+|.++++.. +.||++..+|-
T Consensus 85 I~l~G~I~d~~a~~iiaqL~~l~~ed~-~k~I~L~INSPGGsV~---ag---~aIyd~I~~~-------k~pV~t~v~G~ 150 (277)
T 1tg6_A 85 VCVMGPIDDSVASLVIAQLLFLQSESN-KKPIHMYINSPGGVVT---AG---LAIYDTMQYI-------LNPICTWCVGQ 150 (277)
T ss_dssp EEEESSBCHHHHHHHHHHHHHHHHHCS-SSCEEEEEEECCBCHH---HH---HHHHHHHHHS-------CSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHhcCC-CCCEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEEccE
Confidence 556666666544444444432111244 45555444 888542 22 7787887765 46777766664
Q ss_pred CHHHH
Q 020234 286 NYQTG 290 (329)
Q Consensus 286 ~~~~a 290 (329)
-+..|
T Consensus 151 AASaG 155 (277)
T 1tg6_A 151 AASMG 155 (277)
T ss_dssp EETHH
T ss_pred eHHHH
Confidence 43333
No 166
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=22.95 E-value=2.4e+02 Score=21.14 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=38.8
Q ss_pred CCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhc-ccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCC
Q 020234 234 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKA-ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEA 312 (329)
Q Consensus 234 ~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~-~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~ 312 (329)
...+.+++. ++++.-.+-.+ ...++...++.. . ...++++ .|.+ ..-+++|+-+ |+. .+|..++
T Consensus 46 ~~~~~vvlD-ls~v~~iDSsG--l~~L~~~~~~~~----~~~g~~l~l--~~~~-~~v~~~l~~~----gl~-~~~~i~~ 110 (121)
T 3t6o_A 46 AQPRKVLID-LEGVEFFGSSF--IELLVRGWKRIK----EDQQGVFAL--CSVS-PYCVEVLQVT----HID-EVWPRYS 110 (121)
T ss_dssp SSSCEEEEE-CTTCCEECHHH--HHHHHHHHHHHT----TSTTCEEEE--ESCC-HHHHHHHTTC----SGG-GGSCEES
T ss_pred cCCCeEEEE-CCCCCEEcHHH--HHHHHHHHHHHH----HhcCCEEEE--EeCC-HHHHHHHHHh----Ccc-ceecccC
Confidence 345555444 45566555433 245555555443 1 2344443 3444 4556777766 653 1233378
Q ss_pred CHHHHHHHH
Q 020234 313 TMTGICKQA 321 (329)
Q Consensus 313 ~~~~av~~~ 321 (329)
|.++|+..+
T Consensus 111 ~~~~Al~~~ 119 (121)
T 3t6o_A 111 TKQEALLAM 119 (121)
T ss_dssp SHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999998764
No 167
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=22.83 E-value=1e+02 Score=29.13 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=34.3
Q ss_pred CCCCEEEEEe-ccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCce
Q 020234 234 PDGRKRALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPL 305 (329)
Q Consensus 234 ~~v~~vlv~i-~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~ 305 (329)
+++--.++-| |..+.+.++..+.+..+++.++...+. +...| ||+.|..+...|+.-.+- |||+
T Consensus 280 ~~~g~~~iaIdP~~f~~~~~f~~~~~~~~~~l~~~~~~--~g~~~--v~~PGe~e~~~~~~~~~~----GI~l 344 (365)
T 3i0p_A 280 FSLGHFFIAINVECFRDLNEFKKNVGDINRTLRNTDKL--PGHDR--IYTAGEKEYETEQKRRKF----GDDL 344 (365)
T ss_dssp CCEEEEEEEEEGGGTSCHHHHHHHHHHHHHHHHTSCCC--TTCCC--CCCTTHHHHHHHHHHHHH----CEEE
T ss_pred CcceEEEEEEChHHcCCHHHHHHHHHHHHHHHhcCCCC--CCCCc--eeCCChHHHHHHHHHHcc----Cccc
Confidence 4554455555 776665444443346677766664310 00111 678886555544443333 9998
No 168
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.78 E-value=3.3e+02 Score=22.66 Aligned_cols=90 Identities=12% Similarity=-0.021 Sum_probs=53.9
Q ss_pred ccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 020234 210 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 289 (329)
Q Consensus 210 lgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ 289 (329)
.-++.+.+..+++++-+++ +.|++++|+. .++.+| .|+++++++.+. +.++ .|+...+. ..
T Consensus 165 ~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~d~~a---~g~~~al~~~g~---p~di-~vig~d~~--~~ 225 (276)
T 3ksm_A 165 PYAGDDRGAARSEMLRLLK---ETPTIDGLFT-------PNESTT---IGALVAIRQSGM---SKQF-GFIGFDQT--EE 225 (276)
T ss_dssp CBCCSSHHHHHHHHHHHHH---HCSCCCEEEC-------CSHHHH---HHHHHHHHHTTC---TTSS-EEEEESCC--HH
T ss_pred ecCCCcHHHHHHHHHHHHH---hCCCceEEEE-------CCchhh---hHHHHHHHHcCC---CCCe-EEEEeCCC--HH
Confidence 3456677777777666665 2678888762 236777 899999999862 1122 44556654 44
Q ss_pred HHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 290 GLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 290 ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
+.+.+..- .+-+.+ ..++.+..+.+++++
T Consensus 226 ~~~~~~~~----~l~ttv---~~~~~~~g~~a~~~l 254 (276)
T 3ksm_A 226 LEAAMYAG----EISNLV---VQNPEYMGYLAVQRA 254 (276)
T ss_dssp HHHHHHTT----SSSEEE---ECCHHHHHHHHHHHH
T ss_pred HHHHHHcC----CceEEE---EeCHHHhHHHHHHHH
Confidence 44455542 231222 457777766666655
No 169
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=22.75 E-value=4.1e+02 Score=25.60 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+|+++.|. |+| ++.+. +.|.++..+ +-+|++.-|||.+
T Consensus 225 ~p~v~~v~---FTG---S~~~G---~~i~~~aa~-------~~k~v~lElGGk~ 262 (484)
T 3ifg_A 225 NPIVRKLS---FTG---STAVG---RLLMAQSAP-------TVKKLTLELGGNA 262 (484)
T ss_dssp CTTCCEEE---EES---CHHHH---HHHHHHTGG-------GTCEEEEECCCCC
T ss_pred CCCcCEEE---EEC---CHHHH---HHHHHHhhc-------cCCceEEecCCCC
Confidence 88887554 333 24444 655544322 2467777788865
No 170
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=22.55 E-value=4.4e+02 Score=23.97 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=29.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEe
Q 020234 206 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI 243 (329)
Q Consensus 206 N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i 243 (329)
-..++..+.+.+.+.+.++-+-+ ||+|++|||-.
T Consensus 66 ~~~~lp~~~s~~ell~~I~~lN~----D~~V~GIlvql 99 (288)
T 1b0a_A 66 RSYDLPETTSEAELLELIDTLNA----DNTIDGILVQL 99 (288)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHhcC----CCCCcEEEEeC
Confidence 34678899999999999888888 99999999987
No 171
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=22.52 E-value=3.8e+02 Score=25.92 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhcCcceeee
Q 020234 84 IGDFIMGVFAVFQDLDFSFIEM 105 (329)
Q Consensus 84 ~~~il~~L~~~f~e~d~~llEI 105 (329)
=.++|.++.++..++-..+.++
T Consensus 74 R~~~L~~~a~~l~~~~~~la~~ 95 (497)
T 3k2w_A 74 RQNMLRTFANKIRENKHILAPM 95 (497)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666554444443
No 172
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.51 E-value=3.6e+02 Score=23.05 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=10.1
Q ss_pred EcCCcHHHHHHHHHhcc
Q 020234 182 VAGGGASVIYADTVGDL 198 (329)
Q Consensus 182 ~NG~Glam~t~D~l~~~ 198 (329)
++-...+-.+++.|...
T Consensus 113 ~D~~~~~~~a~~~L~~~ 129 (295)
T 3hcw_A 113 NDNILASENLTRHVIEQ 129 (295)
T ss_dssp ECHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHc
Confidence 34344556667777776
No 173
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=22.47 E-value=3.6e+02 Score=22.93 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=50.8
Q ss_pred cCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 020234 211 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 290 (329)
Q Consensus 211 gG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~a 290 (329)
.++.+.+..+++++-+++ ++|++++|+. .++..| .|+++++++.+.. .+++| +...+ ..+.
T Consensus 168 ~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~d~~a---~g~~~al~~~g~~---~dv~v-ig~d~--~~~~ 228 (303)
T 3d02_A 168 PVAESVDDSRRTTLDLMK---TYPDLKAVVS-------FGSNGP---IGAGRAVKEKRAK---NKVAV-YGMMI--PSQA 228 (303)
T ss_dssp SCTTCHHHHHHHHHHHHH---HCTTEEEEEE-------SSTTHH---HHHHHHHHHTTCT---TTCEE-EECCC--HHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCCCEEEE-------eCCcch---hHHHHHHHhcCCC---CCeEE-EEeCC--CHHH
Confidence 456667766666665554 2677777763 125666 8999999987621 13333 33433 3334
Q ss_pred HHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 291 LAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 291 r~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
.+.+.+- .+...+ ..++.+..+.+++++
T Consensus 229 ~~~~~~~----~lt~tv---~~~~~~~g~~a~~~l 256 (303)
T 3d02_A 229 ASLIKSG----DITEGI---TYDPATAGYALAAVA 256 (303)
T ss_dssp HHHHHHT----SSCEEE---ECCHHHHHHHHHHHH
T ss_pred HHHHHcC----CeEEEE---eCCHHHHHHHHHHHH
Confidence 4555542 454222 457777666666654
No 174
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.26 E-value=2.1e+02 Score=25.32 Aligned_cols=118 Identities=12% Similarity=-0.021 Sum_probs=66.8
Q ss_pred CcEEEEEcCCcHHH-----HHHHHHhccCCCCC-CCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASV-----IYADTVGDLGYASE-LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam-----~t~D~l~~~g~gg~-paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
.+|++++.-..... -..+.+..+ |.. +...+-..++.+.+.-+++++-+++ +.|+.++|+. .
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 246 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAA--DCRDAGLEWLDPQPSSMQMGADMLDRALA---ERPDCDALFC-------C 246 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHT--TCCCGGGEEEECSCCCHHHHHHHHHHHHH---HCTTCCEEEE-------S
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHC--CCCCCChheEecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 56998864432221 133566664 442 2222334567777777777777665 2678888863 2
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
++.+| -|+++++++.+ .++| -|+...+.... +.. .-.+.+. ..++.+..+.+++++
T Consensus 247 nD~~A---~g~~~al~~~G-----~~vP~disvvgfD~~~~~-------~~~-~p~lttv----~~~~~~~g~~Av~~L 305 (339)
T 3h5o_A 247 NDDLA---IGALARSQQLG-----IAVPERLAIAGFNDLQPA-------AWC-TPPLTTV----ATPRRDIGVHAAKAL 305 (339)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEECSBCCGGG-------TTS-SSCCBEE----ECCHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC-----CCCCCCEEEEEECCHHHH-------hcc-CCCceEE----EeCHHHHHHHHHHHH
Confidence 37777 99999999986 3444 34445554311 110 0033332 457777777776655
No 175
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.10 E-value=2.5e+02 Score=24.34 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhcccccC-CCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 020234 212 GAPNEEEVLQYARVVIDCATAD-PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 290 (329)
Q Consensus 212 G~a~~e~~~~a~~ill~~~~~~-~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~a 290 (329)
++.+.+.-+++++-+|+ +. |++++|+ ..++.+| .|+++++++.+ .+ .=+.-+|-.+...+
T Consensus 167 ~~~~~~~~~~~~~~~l~---~~~~~~~ai~-------~~~d~~a---~g~~~al~~~G-----~~-~di~vig~d~~~~~ 227 (313)
T 3m9w_A 167 DGWLPENALKIMENALT---ANNNKIDAVV-------ASNDATA---GGAIQALSAQG-----LS-GKVAISGQDADLAG 227 (313)
T ss_dssp GGGCHHHHHHHHHHHHH---HTTTCCCEEE-------ESSHHHH---HHHHHHHHTTT-----CT-TTSEECCCSCCHHH
T ss_pred CCcCHHHHHHHHHHHHH---hCCCCeeEEE-------ECCCchH---HHHHHHHHHcC-----CC-CCcEEEecCCCHHH
Q ss_pred HHHHHHhccccCCceeecCCCCCHHHHHHHHHHHhhhc
Q 020234 291 LAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 328 (329)
Q Consensus 291 r~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~~~~ 328 (329)
.+.+... ..-+.+ ..++.+..+.+++++...
T Consensus 228 ~~~~~~~----p~lttv---~~~~~~~g~~av~~l~~~ 258 (313)
T 3m9w_A 228 IKRIAAG----TQTMTV---YKPITLLANTAAEIAVEL 258 (313)
T ss_dssp HHHHHHT----SSCCEE---ECCHHHHHHHHHHHHHHH
T ss_pred HHHHHcC----CeEEEE---ecCHHHHHHHHHHHHHHH
No 176
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=22.04 E-value=2.9e+02 Score=23.53 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=20.9
Q ss_pred eccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEec
Q 020234 209 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG 244 (329)
Q Consensus 209 DlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ 244 (329)
=+.|+++.+.+.+.++.+.+ - ++.+-+++|
T Consensus 11 i~~~~~~~~~~~~~a~~~~~-----~-ad~iel~~p 40 (248)
T 1geq_A 11 LTAGDPDKQSTLNFLLALDE-----Y-AGAIELGIP 40 (248)
T ss_dssp EETTSSCHHHHHHHHHHHGG-----G-BSCEEEECC
T ss_pred EeCCCCCHHHHHHHHHHHHH-----c-CCEEEECCC
Confidence 36778877777777777654 3 778888853
No 177
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=21.76 E-value=5.6e+02 Score=24.88 Aligned_cols=24 Identities=4% Similarity=0.153 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhcCcceeeee
Q 020234 83 KIGDFIMGVFAVFQDLDFSFIEMN 106 (329)
Q Consensus 83 ~~~~il~~L~~~f~e~d~~llEIN 106 (329)
+=.++|.++.++..++-..+.+++
T Consensus 87 ~R~~~L~~~a~~l~~~~~ela~~~ 110 (515)
T 2d4e_A 87 ERKRYLLRIAELIEKHADELAVME 110 (515)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566677777666655555543
No 178
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=21.68 E-value=3.2e+02 Score=26.46 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+|+++.|. |+| ++.+. +.|.++..++ -+|++.-|||.+
T Consensus 199 ~p~vd~I~---fTG---S~~~G---~~i~~~aa~~-------lk~v~lELGGk~ 236 (484)
T 3ros_A 199 DPRIQGVA---LTG---SERGG---SAVAEAAGKN-------LKKSTMELGGND 236 (484)
T ss_dssp STTEEEEE---EES---CHHHH---HHHHHHHHHT-------TCEEEEECCCCC
T ss_pred CCCcCEEE---EEC---CHHHH---HHHHHHHhcc-------CCceEeecCCCC
Confidence 78877543 333 24555 6676665543 377888888865
No 179
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=21.56 E-value=76 Score=27.42 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=48.0
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEE-EEe---CCCCHHHHHHHHHHhccccCCceeec
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIF-VRR---GGPNYQTGLAKMRALGEELGIPLEVY 308 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvv-vrl---~G~~~~~ar~~l~~~~~~~gip~~~~ 308 (329)
||+.. .-|..+-+=++|-+-| +-|++.|+++.. .++-|+ .|| -.+..++|++.|.++ |+++.+-
T Consensus 81 ~~~~~-y~VTwy~SwSPC~~CA---~~va~FL~~~~~----v~L~If~aRLY~~~~~~~q~gLr~L~~~----G~~v~iM 148 (190)
T 3vow_A 81 SPNTK-YQVTWYTSWSPCPDCA---GEVAEFLARHSN----VNLTIFTARLYYFQYPCYQEGLRSLSQE----GVAVEIM 148 (190)
T ss_dssp CTTSE-EEEEEEEEECCCHHHH---HHHHHHHHHCTT----EEEEEEEEECTTTTSHHHHHHHHHHHHH----TCEEEEC
T ss_pred CCCce-EEEEEEEeCCchHHHH---HHHHHHHHhCCC----eEEEEEEEecccccCchHHHHHHHHHHC----CCcEEEe
Confidence 56643 4466677788999999 999999998752 466677 555 345678999999998 9988764
No 180
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.48 E-value=3.8e+02 Score=22.84 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=8.1
Q ss_pred EcCCcHHHHHHHHHhcc
Q 020234 182 VAGGGASVIYADTVGDL 198 (329)
Q Consensus 182 ~NG~Glam~t~D~l~~~ 198 (329)
++-...+-.+++.|...
T Consensus 108 ~D~~~~~~~a~~~L~~~ 124 (289)
T 3k9c_A 108 GDDVAGITLAVDHLTEL 124 (289)
T ss_dssp ECHHHHHHHHHHHHHHT
T ss_pred eChHHHHHHHHHHHHHC
Confidence 33334444455555554
No 181
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.26 E-value=2.4e+02 Score=25.13 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCCCC-ceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhh
Q 020234 191 YADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 269 (329)
Q Consensus 191 t~D~l~~~g~gg~pa-N~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~ 269 (329)
..+.+..+ |..+. ...-..++.+.+.-+++++-+|+ +.|..++|+ ..++.+| -|+++++++.+
T Consensus 210 f~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~-------~~nD~~A---~g~~~al~~~G- 273 (355)
T 3e3m_A 210 FKRAMREA--GLNPDQEIRLGAPPLSIEDGVAAAELILQ---EYPDTDCIF-------CVSDMPA---FGLLSRLKSIG- 273 (355)
T ss_dssp HHHHHHHT--TSCSCCEEEESCSSCCHHHHHHHHHHHHH---HCTTCCEEE-------ESSHHHH---HHHHHHHHHHT-
T ss_pred HHHHHHHC--CcCCCccEEEecCCCCHHHHHHHHHHHHc---CCCCCcEEE-------ECChHHH---HHHHHHHHHcC-
Q ss_pred hhhcccce
Q 020234 270 KLKAARMH 277 (329)
Q Consensus 270 ~~~~~~~p 277 (329)
.++|
T Consensus 274 ----~~vP 277 (355)
T 3e3m_A 274 ----VAVP 277 (355)
T ss_dssp ----CCTT
T ss_pred ----CCCC
No 182
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.17 E-value=3.7e+02 Score=22.64 Aligned_cols=118 Identities=8% Similarity=0.110 Sum_probs=60.6
Q ss_pred CcEEEEEcCCcHHH-----HHHHHHhccCCCCCC--CceeeccCCCCHHHHHHHHHHHhcccccCCC--CCEEEEEeccc
Q 020234 176 GRIWTMVAGGGASV-----IYADTVGDLGYASEL--GNYAEYSGAPNEEEVLQYARVVIDCATADPD--GRKRALLIGGG 246 (329)
Q Consensus 176 g~I~ii~NG~Glam-----~t~D~l~~~g~gg~p--aN~lDlgG~a~~e~~~~a~~ill~~~~~~~~--v~~vlv~i~gg 246 (329)
.+|++++.-..... -..+.+..+ |.++ ............+..+++++-+|+ +.|+ +++|+.
T Consensus 138 ~~i~~i~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ai~~----- 207 (298)
T 3tb6_A 138 THMMGIFKADDTQGVKRMNGFIQAHRER--ELFPSPDMIVTFTTEEKESKLLEKVKATLE---KNSKHMPTAILC----- 207 (298)
T ss_dssp CSEEEEEESSSHHHHHHHHHHHHHHHHT--TCCCCGGGEEEECHHHHTTHHHHHHHHHHH---HTTTSCCSEEEC-----
T ss_pred CcEEEEcCCCCccHHHHHHHHHHHHHHc--CCCCCcceEEEecccchhhhHHHHHHHHHh---cCCCCCCeEEEE-----
Confidence 57998875444221 123666664 4433 223332211111112444444443 2677 888762
Q ss_pred cCchHHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHH
Q 020234 247 IANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 323 (329)
Q Consensus 247 i~~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~ 323 (329)
.++.+| .|+++++++.+ .++| .|+...+..... .+. -++.+. ..++.+..+.+++
T Consensus 208 --~~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~~~---~~~-----p~lttv----~~~~~~~g~~a~~ 265 (298)
T 3tb6_A 208 --YNDEIA---LKVIDMLREMD-----LKVPEDMSIVGYDDSHFAQ---ISE-----VKLTSV----KHPKSVLGKAAAK 265 (298)
T ss_dssp --SSHHHH---HHHHHHHHHTT-----CCTTTTCEEECSBCCTHHH---HSS-----SCCBEE----ECCTHHHHHHHHH
T ss_pred --eCcHHH---HHHHHHHHHcC-----CCCCCceEEEecCCcHHHh---ccC-----CCCceE----ecCHHHHHHHHHH
Confidence 237777 89999999986 3344 345566654211 111 134332 4566776666666
Q ss_pred Hh
Q 020234 324 CI 325 (329)
Q Consensus 324 ~~ 325 (329)
++
T Consensus 266 ~l 267 (298)
T 3tb6_A 266 YV 267 (298)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 183
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=20.90 E-value=4.4e+02 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=19.8
Q ss_pred CCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 233 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 233 ~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+|+++.|. |+| ++.+. +.|.++..++ -+|++.-|||.+
T Consensus 222 ~p~v~~I~---fTG---S~~~g---~~i~~~aa~~-------~~~v~lElGGk~ 259 (481)
T 3jz4_A 222 NPLVRKLS---FTG---STEIG---RQLMEQCAKD-------IKKVSLELGGNA 259 (481)
T ss_dssp CTTEEEEE---EES---CHHHH---HHHHHHHTTT-------TCEEEEECCCCE
T ss_pred CCCcCEEE---EEC---CHHHH---HHHHHHHhhc-------CCceEEecCCCC
Confidence 77766443 332 24444 5555543322 366777777754
No 184
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=20.68 E-value=4.4e+02 Score=23.29 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred CcEEEEEcCCcHHHH------HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCc
Q 020234 176 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 249 (329)
Q Consensus 176 g~I~ii~NG~Glam~------t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~ 249 (329)
++|++++.-.+.... ..+.+..+ |-++.... .++.+.+.-+++++-+|+ ..|..++|+ ..
T Consensus 180 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--gi~~~~~~--~~~~~~~~~~~~~~~ll~---~~~~~~ai~-------~~ 245 (349)
T 1jye_A 180 QQIALLAGPLSSVSARLRLAGWHKYLTRN--QIQPIAER--EGDWSAMSGFQQTMQMLN---EGIVPTAML-------VA 245 (349)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHT--TCCCSEEE--ECCSSHHHHHHHHHHHHH---TTCCCSEEE-------ES
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCccccc--cCCCChHHHHHHHHHHHh---CCCCCCEEE-------EC
Q ss_pred hHHHhhhHHHHHHHHHHhhhhhhcccce
Q 020234 250 FTDVATTFNGIIRALREKESKLKAARMH 277 (329)
Q Consensus 250 ~~~vA~~~~gii~al~~~~~~~~~~~~p 277 (329)
++.+| -|+++++++.+ .++|
T Consensus 246 nD~~A---~g~~~al~~~G-----~~vP 265 (349)
T 1jye_A 246 NDQMA---LGAMRAITESG-----LRVG 265 (349)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCBT
T ss_pred ChHHH---HHHHHHHHHcC-----CCCC
No 185
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.56 E-value=4e+02 Score=22.69 Aligned_cols=122 Identities=9% Similarity=-0.002 Sum_probs=67.9
Q ss_pred cEEEEE-cCCcHHHH------HHHHHhccCCCCCCCceee-ccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccC
Q 020234 177 RIWTMV-AGGGASVI------YADTVGDLGYASELGNYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 248 (329)
Q Consensus 177 ~I~ii~-NG~Glam~------t~D~l~~~g~gg~paN~lD-lgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~ 248 (329)
+|+++. .+.+.... ..+.+... |-..-..+. .-++.+.+.-+++++-+|+ +.|++++++|...
T Consensus 134 ~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~a~~i~~~---- 204 (306)
T 8abp_A 134 ESAVMAITANELDTARRRTTGSMDALKAA--GFPEKQIYQVPTKSNDIPGAFDAANSMLV---QHPEVKHWLIVGM---- 204 (306)
T ss_dssp GEEEEEEECTTSHHHHHHHHHHHHHHHHH--TCCGGGEEEEECSSSSHHHHHHHHHHHHT---TCTTCSEEEEECS----
T ss_pred ceEEEEecCCCChHHHHHHHHHHHHHHhc--CCCCcEEEeeccCCCChHHHHHHHHHHHH---hCCCCceEEEEeC----
Confidence 899986 33332221 23667664 322223332 2466677777777766665 3788888443322
Q ss_pred chHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCC----ceeecCCCCCHHHHHHHHHHH
Q 020234 249 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGI----PLEVYGPEATMTGICKQAIDC 324 (329)
Q Consensus 249 ~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gi----p~~~~g~~~~~~~av~~~v~~ 324 (329)
++.+| .|+++++++.+.. .+--.|+...+.. ..+.+.. |+ -+.+ ..++.+..+.++++
T Consensus 205 -nD~~A---~g~~~al~~~g~~---v~di~vvG~D~~~---~~~~~~~-----~~~~~~~ttv---~~~~~~~G~~a~~~ 266 (306)
T 8abp_A 205 -NDSTV---LGGVRATEGQGFK---AADIIGIGINGVD---AVSELSK-----AQATGFYGSL---LPSPDVHGYKSSEM 266 (306)
T ss_dssp -SHHHH---HHHHHHHHHTTCC---GGGEEEEEESSGG---GHHHHTS-----SSCCSEEEEE---ECCHHHHHHHHHHH
T ss_pred -CcHHH---HHHHHHHHHcCCC---CCceEEEEeCcHH---HHHHHHc-----CCCcceEEEe---cCCHHHHHHHHHHH
Confidence 37777 9999999998631 1122345566643 3344443 43 2232 45777766666654
Q ss_pred h
Q 020234 325 I 325 (329)
Q Consensus 325 ~ 325 (329)
+
T Consensus 267 l 267 (306)
T 8abp_A 267 L 267 (306)
T ss_dssp H
T ss_pred H
Confidence 4
No 186
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=20.51 E-value=6e+02 Score=24.75 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=26.4
Q ss_pred HHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 020234 224 RVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 286 (329)
Q Consensus 224 ~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 286 (329)
+.|++ +|+++.|. |+| ++.+. +.|.++..++ -+|++.=|||.+
T Consensus 233 ~~L~~----~p~vd~I~---FTG---S~~vG---~~i~~~aa~~-------lkpv~lELGGk~ 275 (521)
T 4e4g_A 233 DAILT----HPDIAAVS---FVG---STPIA---RYVYGTAAMN-------GKRAQCFGGAKN 275 (521)
T ss_dssp HHHHT----CTTCCEEE---EES---CHHHH---HHHHHHHHHT-------TCEEEEECCCCE
T ss_pred HHHHh----CCCcCEEE---EEC---CHHHH---HHHHHHHhhc-------CCCeeecCCCCC
Confidence 44566 88888654 333 24555 6666654443 367877788854
No 187
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=20.49 E-value=5.1e+02 Score=24.83 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhcCcceeee
Q 020234 83 KIGDFIMGVFAVFQDLDFSFIEM 105 (329)
Q Consensus 83 ~~~~il~~L~~~f~e~d~~llEI 105 (329)
+=.++|.++.++..++-..+.++
T Consensus 67 ~R~~~L~~~a~~l~~~~~ela~~ 89 (479)
T 2imp_A 67 ERASWLRKISAGIRERASEISAL 89 (479)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677777776665544444
No 188
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=20.42 E-value=6.1e+02 Score=24.78 Aligned_cols=70 Identities=9% Similarity=-0.078 Sum_probs=48.3
Q ss_pred HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhh
Q 020234 191 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESK 270 (329)
Q Consensus 191 t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~ 270 (329)
.++.|+.. |.=|..-++-|-=.+++...++++-.-. ++++++|++.+++- .+. ..++..++..
T Consensus 34 ~~~~l~~~--~~l~~~vv~~g~v~t~~~~~~~~~~~n~----~~~vdgvi~~~~TF-s~a-------~~~i~~l~~l--- 96 (500)
T 4f2d_A 34 VVNALNTE--AKLPCKLVLKPLGTTPDEITAICRDANY----DDRCAGLVVWLHTF-SPA-------KMWINGLTML--- 96 (500)
T ss_dssp HHHHHHHH--TCCSSEEEECCCBCSHHHHHHHHHHHHH----CTTEEEEEEECCSC-CCT-------HHHHHHHHHC---
T ss_pred HHHHhccc--cCCCeEEEecCcCCCHHHHHHHHHHhcc----ccCCcEEEEeCCcC-ccH-------HHHHHHHHhc---
Confidence 34556653 3347777888888889988888877645 78999998887432 121 4556666654
Q ss_pred hhcccceEEEE
Q 020234 271 LKAARMHIFVR 281 (329)
Q Consensus 271 ~~~~~~pvvvr 281 (329)
++||+.+
T Consensus 97 ----~~PvL~~ 103 (500)
T 4f2d_A 97 ----NKPLLQF 103 (500)
T ss_dssp ----CSCEEEE
T ss_pred ----CCCEEEE
Confidence 6999987
No 189
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=20.36 E-value=2.4e+02 Score=25.98 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHhccccCCcee
Q 020234 284 GPNYQTGLAKMRALGEELGIPLE 306 (329)
Q Consensus 284 G~~~~~ar~~l~~~~~~~gip~~ 306 (329)
|...++|+++|++.+++.|+|+.
T Consensus 94 Glg~~~GL~~L~~~~~e~GLpv~ 116 (298)
T 3fs2_A 94 GIGLEKALEVFSDLKKEYGFPVL 116 (298)
T ss_dssp -CCHHHHHHHHHHHHHHHCCCEE
T ss_pred CcCHHHHHHHHHHHHHhcCCeEE
Confidence 44568999999999999999974
No 190
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=20.17 E-value=4.2e+02 Score=24.37 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhcccccCCCCCEEEEEec--c----------ccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEE-
Q 020234 214 PNEEEVLQYARVVIDCATADPDGRKRALLIG--G----------GIANFTDVATTFNGIIRALREKESKLKAARMHIFV- 280 (329)
Q Consensus 214 a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~--g----------gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv- 280 (329)
.+++.+.++.+.+.+ .+.++|=||.. . .+.+-.+.. ..+++++++. ..+||.+
T Consensus 67 ~~p~~~~~aA~~a~~-----~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~---~eiv~av~~~------v~~PV~vK 132 (350)
T 3b0p_A 67 SDPKSLAEAARIGEA-----FGYDEINLNLGCPSEKAQEGGYGACLLLDLARV---REILKAMGEA------VRVPVTVK 132 (350)
T ss_dssp SCHHHHHHHHHHHHH-----TTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHH---HHHHHHHHHH------CSSCEEEE
T ss_pred CCHHHHHHHHHHHHH-----cCCCEEEECCcCCCCcCcCCCcchhHHhCHHHH---HHHHHHHHHH------hCCceEEE
Confidence 357888888888764 46788888862 1 111112233 4566666654 3578887
Q ss_pred -EeCCC
Q 020234 281 -RRGGP 285 (329)
Q Consensus 281 -rl~G~ 285 (329)
|+|..
T Consensus 133 iR~g~~ 138 (350)
T 3b0p_A 133 MRLGLE 138 (350)
T ss_dssp EESCBT
T ss_pred EecCcC
Confidence 55554
No 191
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.15 E-value=2.8e+02 Score=23.70 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=68.1
Q ss_pred CcEEEEEcCCcHHH-----HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEEEeccccCch
Q 020234 176 GRIWTMVAGGGASV-----IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANF 250 (329)
Q Consensus 176 g~I~ii~NG~Glam-----~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv~i~ggi~~~ 250 (329)
.+|++++.-.+... -..+.+..+ |... ...-+-++.+.+.-+++++-+|+ +.|+.++|+. .+
T Consensus 127 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~ 193 (289)
T 3k9c_A 127 RNIAHIDGADAPGGADRRAGFLAAMDRH--GLSA-SATVVTGGTTETEGAEGMHTLLE---MPTPPTAVVA-------FN 193 (289)
T ss_dssp CSEEEECCTTSTTHHHHHHHHHHHHHHT--TCGG-GEEEECCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------SS
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHHHHC--CCCC-CccEEECCCCHHHHHHHHHHHHc---CCCCCCEEEE-------CC
Confidence 46888865443311 133666664 4332 22234567778877777777775 2678888863 23
Q ss_pred HHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHHHHHh
Q 020234 251 TDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325 (329)
Q Consensus 251 ~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~v~~~ 325 (329)
+.+| .|+++++++.+ .++| -|+...+.... +.. .-++.+ + ..++.+..+.+++++
T Consensus 194 d~~A---~g~~~al~~~g-----~~vP~di~vig~D~~~~~-------~~~-~p~ltt-v---~~~~~~~g~~a~~~l 251 (289)
T 3k9c_A 194 DRCA---TGVLDLLVRSG-----RDVPADISVVGYDDSRLA-------RIP-HVQMTT-I---SQDATHMAEAAVDGA 251 (289)
T ss_dssp HHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCTTT-------TCT-TTCCEE-E---ECCHHHHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHcC-----CCCCCceEEEEECCHHHH-------hcC-CCCcce-E---ecCHHHHHHHHHHHH
Confidence 7777 89999999986 3344 34556654311 110 013433 2 567777777777655
No 192
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.12 E-value=2.4e+02 Score=21.74 Aligned_cols=71 Identities=7% Similarity=-0.041 Sum_probs=39.7
Q ss_pred CCCCEEEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCc------eee
Q 020234 234 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP------LEV 307 (329)
Q Consensus 234 ~~v~~vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip------~~~ 307 (329)
+..+.+++. +++++-.|-.+. ..+....++... .... +++.|.+ ..-+++|+.+ |+. ..+
T Consensus 62 ~~~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~--l~l~~~~-~~v~~~l~~~----gl~~~~~~~~~i 127 (143)
T 3llo_A 62 ENIHTVILD-FTQVNFMDSVGV--KTLAGIVKEYGD----VGIY--VYLAGCS-AQVVNDLTSN----RFFENPALKELL 127 (143)
T ss_dssp -CCSEEEEE-CTTCCCCCHHHH--HHHHHHHHHHHT----TTCE--EEEESCC-HHHHHHHHHT----TTTSSGGGGGGE
T ss_pred CCceEEEEE-CCCCccccHHHH--HHHHHHHHHHHH----CCCE--EEEEeCC-HHHHHHHHhC----CCeeccCccceE
Confidence 345555444 566666555442 566665555542 2333 4444555 4457788776 653 133
Q ss_pred cCCCCCHHHHHHHH
Q 020234 308 YGPEATMTGICKQA 321 (329)
Q Consensus 308 ~g~~~~~~~av~~~ 321 (329)
+.|.++|+..+
T Consensus 128 ---f~s~~~Al~~~ 138 (143)
T 3llo_A 128 ---FHSIHDAVLGS 138 (143)
T ss_dssp ---ESSHHHHHHHT
T ss_pred ---ECcHHHHHHHH
Confidence 67999998764
Done!