RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020234
(329 letters)
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 473 bits (1219), Expect = e-162
Identities = 141/332 (42%), Positives = 206/332 (62%), Gaps = 3/332 (0%)
Query: 1 MGGCKGPITTFIVEPFVPHNQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFL 58
+G G + F++EPFVPH+Q E+Y+ I + R G + F GG+++ + K + + +
Sbjct: 95 VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLV 154
Query: 59 PTEKHMTL-DACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYP 117
++ + D L+ P + + + FI G+F ++DL F+++E+NP + Y
Sbjct: 155 GVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV 214
Query: 118 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 177
LD+ ++D TA + KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGR
Sbjct: 215 LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGR 274
Query: 178 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 237
IWTMVAGGGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T +
Sbjct: 275 IWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPD 334
Query: 238 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 297
+ L+IGG IANFT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL M +
Sbjct: 335 GKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEV 394
Query: 298 GEELGIPLEVYGPEATMTGICKQAIDCIMSAS 329
G+ GIP+ V+G E MT I A+ +
Sbjct: 395 GKTTGIPIHVFGTETHMTAIVGMALGHRPIPN 426
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 395 bits (1017), Expect = e-137
Identities = 140/326 (42%), Positives = 205/326 (62%), Gaps = 3/326 (0%)
Query: 1 MGGCKGPITTFIVEPFVPHNQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFL 58
+G G + F++EPFVPH+Q E+Y+ I + R G + F GG+++ + K + + +
Sbjct: 95 VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLV 154
Query: 59 PTEKHMTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYP 117
++ + + L+ P + + + FI G+F ++DL F+++E+NP + Y
Sbjct: 155 GVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV 214
Query: 118 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 177
LD+ ++D TA + KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGR
Sbjct: 215 LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGR 274
Query: 178 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 237
IWTMVAGGGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T +
Sbjct: 275 IWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPD 334
Query: 238 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 297
+ L+IGG IANFT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL M +
Sbjct: 335 GKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEV 394
Query: 298 GEELGIPLEVYGPEATMTGICKQAID 323
G+ GIP+ V+G E MT I A+
Sbjct: 395 GKTTGIPIHVFGTETHMTAIVGMALG 420
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 54.4 bits (132), Expect = 2e-08
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 13 VEPFVPHNQEYYLSIVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTL 66
V V +EYY ++ DR + S+ GG++IEE + + ++ K
Sbjct: 90 VAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRP 149
Query: 67 DACAPLIATLPLEFR-GKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGEL 124
++ LE K+ ++ ++ ++ +D S E+NP + +G D + L
Sbjct: 150 FEAREMVKRAGLEGNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVL 209
Query: 125 DDTAAFK 131
DD A F+
Sbjct: 210 DDNALFR 216
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 53.7 bits (130), Expect = 2e-08
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 21 QEYYLSIVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIA 74
+E YL+I+ DR S GG++IEE N + + + + + +
Sbjct: 113 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 172
Query: 75 TLPL--EFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 131
L + + D I ++ +F +D + +E+NPF G+ D + DD A F+
Sbjct: 173 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 232
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 52.9 bits (128), Expect = 5e-08
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 21 QEYYLSIVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIA 74
+E YL V DR + F S GG+EIE+ + + L L
Sbjct: 106 KELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAF 165
Query: 75 TLPL--EFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 130
L L + + MG+ +F + D + IE+NP + G+ LD + D A F
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALF 224
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 6e-08
Identities = 56/315 (17%), Positives = 82/315 (26%), Gaps = 141/315 (44%)
Query: 19 HNQEYY----LSIVSDR-LGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLI 73
H ++ Y L IV + + TI F G I EN+ M +
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA-----------MIFETIV--- 1697
Query: 74 ATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDT------ 127
D + +F++++ F E +G L T
Sbjct: 1698 ------------DGKLKTEKIFKEINEHSTSYT-F---RSE------KGLLSATQFTQPA 1735
Query: 128 ------AAFKNFKKWANIEFPLPF-GRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWT 180
AAF++ K I F G HSL E + L
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAG----------HSLGE-------YAAL-------- 1770
Query: 181 MVAGGGA-SVIYADTV------GDLGY----ASELG--NYAEYSGAPN------EEEVLQ 221
+ S+ V G ELG NY + P +E LQ
Sbjct: 1771 -ASLADVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 222 YARVVIDCATADPDGRKRALLIGGG---IANFTDVATTFN---------GIIRALRE--- 266
Y V++ G I N +N G +RAL
Sbjct: 1828 Y---VVERVGKR----------TGWLVEIVN-------YNVENQQYVAAGDLRALDTVTN 1867
Query: 267 -----KESKLKAARM 276
K K+ +
Sbjct: 1868 VLNFIKLQKIDIIEL 1882
Score = 37.3 bits (86), Expect = 0.007
Identities = 31/166 (18%), Positives = 47/166 (28%), Gaps = 48/166 (28%)
Query: 52 KVKTIFLPT-----EKHMTLDACAPLIATLP---LEFRGKIGDFIMGVFAVFQDLDFSFI 103
K FLP + A + L + F K D + V+ F
Sbjct: 415 KFSNRFLPVASPFHSHLLV-PASDLINKDLVKNNVSFNAK--DIQIPVYDTF-------- 463
Query: 104 EMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLD--- 160
+G D+R L + + + I P+ + + H LD
Sbjct: 464 --------DGS----DLR-VLSGSISERIVD--CIIRLPVKWETTTQFKAT--HILDFGP 506
Query: 161 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 206
S T N G G VI A T+ D+ + G
Sbjct: 507 GGASGLGVLTHRNKDGT--------GVRVIVAGTL-DINPDDDYGF 543
Score = 32.3 bits (73), Expect = 0.29
Identities = 42/249 (16%), Positives = 61/249 (24%), Gaps = 119/249 (47%)
Query: 107 PFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIE--FPLP-----FGRVLSSTESFIHSL 159
P TL +G ++E +P L E F L
Sbjct: 8 PLTLSHG------------------------SLEHVLLVPTASFFIASQLQ--EQFNKIL 41
Query: 160 ----------DEKTS-ASL--KFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 206
DE T+ A L KF LGY S L
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKF----------------------------LGYVSSL-- 71
Query: 207 YAEYSGAPNEEEVLQYARVVIDC---------------ATADPDGRKRALLIGGGIANFT 251
E S ++VL + + A + + I N+
Sbjct: 72 -VEPSKVGQFDQVL---NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 252 DVATTFN---------GIIRALREKESKLKAARMHIFVRRGGP-NYQTGLAKMRALGEEL 301
+ RA+ E ++L A IF GG N ++R L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVA----IF---GGQGNTDDYFEELRDLY--- 177
Query: 302 GIPLEVYGP 310
+ Y
Sbjct: 178 ----QTYHV 182
Score = 27.3 bits (60), Expect = 9.7
Identities = 11/89 (12%), Positives = 18/89 (20%), Gaps = 23/89 (25%)
Query: 234 PDGRK-RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN---YQT 289
G++ R D I + + E + F T
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY------TF---RSEKGLLSAT 1729
Query: 290 ----------GLAKMRALGEELGIPLEVY 308
A L + IP +
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 6e-05
Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 60/218 (27%)
Query: 21 QEYY--LSIVSD----------RLGCTISFSECGGIEIE-------ENWDKVKTIFLP-- 59
++ + LS+ + + S+ + + E K TI +P
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 60 -----------TEKHMTL------DACAPLIATLPLEFRGKIGDFIM---------GVFA 93
H ++ +P I
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 94 VFQD--LDFSFIEMNPFTLVNGEPYPLDMRGELDDTAA-FKNFKKWANIEFPLPFGRVLS 150
+F+ LDF F+E + + + G + +T K +K + P + R+++
Sbjct: 492 LFRMVFLDFRFLEQK----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVN 546
Query: 151 STESFIHSLDEKTSAS-----LKFTVLNPKGRIWTMVA 183
+ F+ ++E S L+ ++ I+
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Length = 209
Score = 32.0 bits (72), Expect = 0.16
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 13 VEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVK 54
V Y L+ + LG ++ SE G + +W +++
Sbjct: 146 VISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQ 187
>3iyl_A Outer capsid VP4; non-enveloped virus, membrane penetration
protein, autocleav myristol group, icosahedral virus;
HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_I
Length = 648
Score = 30.2 bits (67), Expect = 1.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 154 SFIHSLDEKTSA----SLKFTVLNPKGRIWTMVAGGGAS----VIYADTVGDLGYASE 203
SF + D ++A LK VLNP G++W V A+ I +D G + +E
Sbjct: 19 SFTPTSDMTSTAAPAIDLKPGVLNPTGKLWRPVGTSVATIDSLAIVSDRFGQYSFVNE 76
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA,
exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A
{Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Length = 179
Score = 28.8 bits (64), Expect = 1.5
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 19 HNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVK 54
LS + +G + E+ D +K
Sbjct: 123 IGDNLRLSTKEEEMGVLRALCSNCKTEMVREGDILK 158
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 28.5 bits (64), Expect = 3.3
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 276 MHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPE--ATMTGICKQAID--CIMS 327
+ F + G Y+ + + YGP I K+A+D I++
Sbjct: 461 LDEFEKEGYAVYRVNTRFQDRVAQS-------YGPVKRKLEHAI-KRAVDPNNILA 508
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1;
glucosamine-6-phosphate synthase, aldose/ketose
isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo
sapiens} PDB: 2zj4_A* 2v4m_A*
Length = 375
Score = 27.8 bits (63), Expect = 5.1
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 31 RLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPL 78
R G + + E +N + I +P ++D +++ +PL
Sbjct: 306 RQGRPVVICDKEDTETIKNTKRT--IKVPH----SVDCLQGILSVIPL 347
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET:
GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB:
1mor_A* 1mos_A*
Length = 368
Score = 27.8 bits (63), Expect = 5.2
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 31 RLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPL 78
R G F++ + + + I +P + AP+ T+PL
Sbjct: 299 RGGQLYVFADQDAGFVSSDNMHI--IEMPH----VEEVIAPIFYTVPL 340
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 27.6 bits (60), Expect = 6.0
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 230 ATADPDGRKRALLIG 244
AT P RAL IG
Sbjct: 85 ATPLPGQTVRALFIG 99
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 27.5 bits (61), Expect = 6.4
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 9/103 (8%)
Query: 218 EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR---------EKE 268
+ + + PD ++ G DVA L E
Sbjct: 127 DFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESL 186
Query: 269 SKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPE 311
+ I RRG ++R L + G+ + + E
Sbjct: 187 RPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAE 229
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing];
structural genomics; 2.28A {Francisella tularensis
subsp}
Length = 372
Score = 27.4 bits (62), Expect = 7.2
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 31 RLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPL 78
R G I F + E + + L D AP++ T+PL
Sbjct: 302 RGGKLILFVDKAVKERVNFDN-SIVLELDA----GHDFSAPVVFTIPL 344
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.419
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,298,226
Number of extensions: 341498
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 29
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)