RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020234
(329 letters)
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 61.8 bits (150), Expect = 2e-12
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 21/147 (14%)
Query: 176 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPD 235
G I MV G G ++ D V G E N+ + G +E V + +++ +D
Sbjct: 19 GNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKII----LSDDK 72
Query: 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 295
+ ++ +GII A+ E + + VR G N + G K+
Sbjct: 73 VKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP-----VVVRLEGNNAELGAKKLA 124
Query: 296 ALGEELGIPLEVYGPEATMTGICKQAI 322
+ G+ + +T +Q +
Sbjct: 125 ----DSGLNII---AAKGLTDAAQQVV 144
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 46.9 bits (110), Expect = 1e-06
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 7 PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEENWDKVKTIFLPTEKHM 64
+ +V + ++E YL+I+ DR G + S GG++IEE + E+
Sbjct: 100 KVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELI-FKEQID 158
Query: 65 TLDACAPLIATLPLEFRGKIGDFI-------MGVFAVFQDLDFSFIEMNPFTLV-NGEPY 116
++ A E G +G ++ +F +D + +E+NPF G+
Sbjct: 159 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVV 218
Query: 117 PLDMRGELDDTAAFK 131
D + DD A F+
Sbjct: 219 CFDAKINFDDNAEFR 233
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 44.1 bits (103), Expect = 7e-06
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 10 TFIVEPFVPHNQEYYLSIVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKH 63
+VE +E YL V DR + F S GG+EIE+ + + L
Sbjct: 95 QILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTG 154
Query: 64 MTLDACAPLIATLPLEFR--GKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDM 120
L L LE + + MG+ +F + D + IE+NP + G+ LD
Sbjct: 155 PMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDG 214
Query: 121 RGELDDTAAFK 131
+ D A F+
Sbjct: 215 KLGADGNALFR 225
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 41.0 bits (96), Expect = 3e-05
Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 21/165 (12%)
Query: 161 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVL 220
E +A + G I V G G ++ D + G + N+ + G E +V
Sbjct: 4 ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNG--GKPANFLDLGGGVKESQVY 61
Query: 221 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV 280
Q TADP ++ + A NGI +A RE E K+ + V
Sbjct: 62 Q----AFKLLTADPKVEA---ILVNIFGGIVNCAIIANGITKACRELELKVP-----LVV 109
Query: 281 RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 325
R G N + + G+P+ + K+A+ +
Sbjct: 110 RLEGTNVHEA----QNILTNSGLPITSA---VDLEDAAKKAVASV 147
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 33.7 bits (77), Expect = 0.008
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 13 VEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVK 54
V Y L+ + LG ++ SE G + +W +++
Sbjct: 72 VISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQ 113
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 31.6 bits (71), Expect = 0.068
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 34/152 (22%)
Query: 174 PKG-RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE------EVLQYARVV 226
P+G ++ M GG V+ AD + G A EE + V
Sbjct: 1 PRGNKVAIMTNAGGPGVLTADELDKRG-----LKLATLEEKTIEELRSFLPPMAAVKNPV 55
Query: 227 IDCATADPDGRKRAL--------------LIGGGIANFTDVATTFNGIIRALREKESKLK 272
A+A + R + + GIIRA++E ++
Sbjct: 56 DMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNE-- 113
Query: 273 AARMHIFVRRGGPNYQTGLAKMRALGEELGIP 304
+ + + G + K + L E+ GIP
Sbjct: 114 --KPVLAMFMAGYVSE----KAKELLEKNGIP 139
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 29.1 bits (64), Expect = 0.66
Identities = 14/124 (11%), Positives = 25/124 (20%), Gaps = 11/124 (8%)
Query: 11 FIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPT-----EKHMT 65
+ + + + I + I M
Sbjct: 86 YFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMD 145
Query: 66 LDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF------TLVNGEPYPLD 119
+ + E G + DL+F E++ VNG PY
Sbjct: 146 VIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWL 205
Query: 120 MRGE 123
Sbjct: 206 RYDR 209
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 29.0 bits (64), Expect = 0.71
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 15/113 (13%)
Query: 17 VPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATL 76
+ + S+ G I + + + M A +
Sbjct: 109 NIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQV-----FEMGDKLVAKAKELV 163
Query: 77 PLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF------TLVNGEPYPLDMRGE 123
P G ++L+ EM+ + +NG PY GE
Sbjct: 164 PPGMIG----PFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGE 212
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 27.2 bits (59), Expect = 1.8
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 235 DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 294
D ++ L++ GG F +++ L +K S+ + + L +
Sbjct: 3 DVKRPVLMLAGGTG-----IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57
Query: 295 RA 296
+
Sbjct: 58 QQ 59
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 26.1 bits (57), Expect = 6.9
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 130 FKNFKKWANIEFPLPFGRVLSSTESFIHSLDE 161
W + F L RVL+ T + +
Sbjct: 329 QPGDPDWEELLFKLWTTRVLNYTMTVALRGYD 360
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 133
Score = 25.0 bits (54), Expect = 8.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 122 GELDDTAAFKNFKKWANIEFP 142
G D +A ++K A +E
Sbjct: 112 GNDDHSALACYYEKLAKVEVT 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.419
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,275,459
Number of extensions: 61729
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 15
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)