BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020236
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 319 bits (818), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 225/324 (69%), Gaps = 8/324 (2%)
Query: 7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
+Y +F+ +++A I IH TPVL+S LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct: 4 QYDISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNA 63
Query: 67 VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
V SL D + K VVTHSSGNH AL+ AAKL GIPAYIV+P+ AP CK + YG
Sbjct: 64 VRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGA 123
Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
+++ E + SRE+VA +V EET ++VHP + +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183
Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
+ GGG+++G+A+ K++KP++++ AAEP A+D QSK G+++ L T+ADG+++
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243
Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
+G TWPI+RDLVDD+ TV + EI A +L +E +K+ +EP+ +G+AAVLS F+
Sbjct: 244 IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQT--V 301
Query: 303 WQDSKKIGIVLSGGNVDL--GVLW 324
+ K I IVLSGGNVDL + W
Sbjct: 302 SPEVKNICIVLSGGNVDLTSSITW 325
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/321 (49%), Positives = 222/321 (69%), Gaps = 6/321 (1%)
Query: 7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
+Y +F+ +++A I +H TPVL+S LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct: 4 QYDISFADVEKAHLNIQDSVHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNA 63
Query: 67 VLSLDEDQ---AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
+ L D K VVTHSSGNH AL+ AAKL GIPAYIV+P+ AP CK + YG
Sbjct: 64 IRGLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGA 123
Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
+++SE + SRE+VA ++++ET +LVHP + +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYSEPSDESRENVAQRIIQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183
Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
+ GGG+++G+A+ K++KP++++ AAEP A+D QSK G + L T+ADG+++
Sbjct: 184 VGGGGMVAGIAITIKTLKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSS 243
Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
+G TWPI+RDLVDDV TV + EI A +L +E +K+ +EP+ +GLAAVLS F+
Sbjct: 244 IGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWERMKLLIEPTAGVGLAAVLSQHFQT--V 301
Query: 303 WQDSKKIGIVLSGGNVDLGVL 323
+ K I IVLSGGNVDL L
Sbjct: 302 SPEVKNICIVLSGGNVDLTSL 322
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/324 (48%), Positives = 220/324 (67%), Gaps = 8/324 (2%)
Query: 7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
+Y +F+ +++A I IH TPVL+S LN ++GR+LFFKCE FQK G+F RGA NA
Sbjct: 4 QYDISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFXIRGALNA 63
Query: 67 VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
V SL D + K VVTHSSGNH AL+ AAKL GIPAYIV+P+ AP CK + YG
Sbjct: 64 VRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGA 123
Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
+++ E + SRE+VA +V EET + VHP + +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYCEPSDESRENVAKRVTEETEGIXVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183
Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
+ GGG ++G+A+ K++KP++++ AAEP A+D QSK G++ L T+ADG+++
Sbjct: 184 VGGGGXLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLXPNLYPPETIADGVKSS 243
Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
+G TWPI+RDLVDD+ TV + EI A +L +E K+ +EP+ +G+AAVLS F+
Sbjct: 244 IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERXKLLIEPTAGVGVAAVLSQHFQT--V 301
Query: 303 WQDSKKIGIVLSGGNVDL--GVLW 324
+ K I IVLSGGNVDL + W
Sbjct: 302 SPEVKNICIVLSGGNVDLTSSITW 325
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 192/310 (61%), Gaps = 6/310 (1%)
Query: 12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
+ + A +RI + +KTPVL+S T+N +FFKCE FQK GAFKFRGA NA+ L+
Sbjct: 10 YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69
Query: 72 EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
E Q GV+T SSGNHA A++L+AK+ GIPA I++P +AP+ KV YGGQVI +
Sbjct: 70 EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129
Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
RE +A ++ E G ++ PY+ +++GQGT + E E+V LD + V + GGGL+S
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLS 189
Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPI 250
G ALAA+ P + EP ND QS G I+ + T+ADG + LG+ T+ I
Sbjct: 190 GSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSI 249
Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
+++ VDD++TV D+E+I+ +K +K+ VEP+G + AA R +K+IG
Sbjct: 250 IKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAA-----RAMKEKLKNKRIG 304
Query: 311 IVLSGGNVDL 320
I++SGGNVD+
Sbjct: 305 IIISGGNVDI 314
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 190/316 (60%), Gaps = 15/316 (4%)
Query: 11 NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL 70
+ + A +RI+ Y H+TP+L+S L+ + G+ L K E QK G+FK RGA + L+L
Sbjct: 3 SLQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALAL 62
Query: 71 DEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130
+ KG++ SSGNHA ++ AA++ G+ A +V+P++A K YG +V+
Sbjct: 63 ENP---KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV 119
Query: 131 TMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLL----DTIIVPISG 186
T +RE VA + EETG L+HP++D +I+GQGT LE L Q + ++ P+ G
Sbjct: 120 TAKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGG 179
Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL-LETNTVADGLRAF-LG 244
GGL++G+A A K++ P +L EP A+DA +S AGRI+ L T ADG+R LG
Sbjct: 180 GGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLG 239
Query: 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ 304
+ T+PI+R+ VD ++TV ++ ++EA +L + K VEP+GA+ LAAVL G R
Sbjct: 240 ERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL----- 294
Query: 305 DSKKIGIVLSGGNVDL 320
+ + ++LSGGN D
Sbjct: 295 -PQTLALLLSGGNRDF 309
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 181/307 (58%), Gaps = 4/307 (1%)
Query: 15 IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ 74
I EA+KR++ I+KT + S + +F K E Q+ G+F RGA N + SL E +
Sbjct: 27 ILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLTEAE 86
Query: 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHS 134
KGVV S+GNHA +SL+ + GI +V+PK APK KV Y +V+ +
Sbjct: 87 KRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFND 146
Query: 135 RESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVA 194
+ S+++E G + + PY+D ++I+GQGTI LE +E + +D +IVPI GGGLI+G+A
Sbjct: 147 TIAKVSEIVETEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIA 206
Query: 195 LAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIVRD 253
+A KSI P I+++ + + A S G I T T T+ADG + G+LT+ IVR+
Sbjct: 207 IAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGCDVSRPGNLTYEIVRE 266
Query: 254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVL 313
LVDD++ V + EI +M + KV E +GA+ AA+LS + + Q+ K + I+
Sbjct: 267 LVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLS--GKLDSHIQNRKTVSII- 323
Query: 314 SGGNVDL 320
SGGN+DL
Sbjct: 324 SGGNIDL 330
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 14/298 (4%)
Query: 29 TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88
TP+ E L+S + K E Q +FK RGA + L E+Q GV+T S+GNHA
Sbjct: 32 TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHA 91
Query: 89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGA 148
++ ++ G+ A IV+P KV+ V +GG+V+ A ++ A ++ ++ G
Sbjct: 92 QGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGF 151
Query: 149 VLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILA 208
V P++ +I+GQGT++LE L+Q LD + VP+ GGGL +GVA+ K + P I+++A
Sbjct: 152 TWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIA 211
Query: 209 AEPIGANDAAQSKA---AGRIITLLETNTVADGLRA-FLGDLTWPIVRDLVDDVITVEDK 264
E A D+A KA AG + L A+G+ +GD T+ + ++ +DD+ITV+
Sbjct: 212 VE---AEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSD 268
Query: 265 EIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD--SKKIGIVLSGGNVDL 320
I AMK +E ++ EPSGA+ LA G +K A + +++ +LSG NV+
Sbjct: 269 AICAAMKDLFEDVRAVAEPSGALALA-----GMKKYIALHNIRGERLAHILSGANVNF 321
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Query: 28 KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
++P+ +E L+ G + + K E Q+ +F RGA N + +L ++ KGV+T S+GNH
Sbjct: 60 ESPLELAEKLSDRLGVNFYIKREDKQRVFSFXLRGAYNMMSNLSREELDKGVITASAGNH 119
Query: 88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG 147
A ++LA + A IV+P P+ K++ V GG V+ T ++ A ++ E+ G
Sbjct: 120 AQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDG 179
Query: 148 AVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRIL 207
+ P++D +I GQGTI E Q+ + + +P+ GGGLI+GVA K I P +I+
Sbjct: 180 LKYIPPFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKII 239
Query: 208 AAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIVRDLVDDVITVEDKEI 266
EP GA S G + L +T ADG+ A +G+ T+ ++L+D ++ V + I
Sbjct: 240 GVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVANDGI 299
Query: 267 IEAMKLCYE 275
A+K Y+
Sbjct: 300 SAAIKDVYD 308
>pdb|1PWE|A Chain A, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|B Chain B, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|C Chain C, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|D Chain D, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|E Chain E, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|F Chain F, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWH|A Chain A, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|B Chain B, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|C Chain C, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|D Chain D, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
Length = 327
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 16/281 (5%)
Query: 23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTH 82
SL++ KTP+ S L+ ++G S+F K + Q G+FK RG + + + Q K V
Sbjct: 6 SLHV-KTPLRDSMALSKVAGTSVFLKMDSSQPSGSFKIRGIGH-LCKMKAKQGCKHFVCS 63
Query: 83 SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKV 142
S+GN A + AA+ G+PA IV+P P +E ++ G + M +K
Sbjct: 64 SAGNAGMATAYAARRLGLPATIVVPSTTPALTIER-LKNEGATVEVVGEMLDEAIQLAKA 122
Query: 143 LEET--GAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200
LE+ G V + P++D I G ++ E E + IV G + + +
Sbjct: 123 LEKNNPGWVYISPFDDPLIWEGHTSLVKELKETLSAKPGAIV--LSVGGGGLLCGVVQGL 180
Query: 201 KPA----IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRD-- 253
+ + I+A E GA+ + G+++TL + +VA L +G T + +
Sbjct: 181 REVGWEDVPIIAMETFGAHSFHAAVKEGKLVTLPKITSVAKALGVNTVGAQTLKLFYEHP 240
Query: 254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLS 294
+ +VI+ D+E + A++ + K+ VEP+ LAAV S
Sbjct: 241 IFSEVIS--DQEAVTAIEKFVDDEKILVEPACGAALAAVYS 279
>pdb|4H27|A Chain A, Modulating The Function Of Human Serine Racemase And Human
Serine Dehydratase By Protein Engineering
Length = 364
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 13/280 (4%)
Query: 28 KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
KTP+ S L+ M+G S++ K + Q G+F RG + + Q V SSGN
Sbjct: 46 KTPIRDSMALSKMAGTSVYLKMDSAQPSGSFXIRGIGHFCKRWAK-QGCAHFVCSSSGNA 104
Query: 88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV-IWSEATMHSRESVASKVLEET 146
A + AA+ G+PA IV+P P +E + G V + E + E +
Sbjct: 105 GMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEAFELAKALAKNNP 164
Query: 147 GAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPA--- 203
G V + P++D I G +I E E L + G + + ++
Sbjct: 165 GWVYIPPFDDPLIWEGHASIVKELKET--LWEKPGAIALSVGGGGLLCGVVQGLQEVGWG 222
Query: 204 -IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRD--LVDDVI 259
+ ++A E GA+ + AG++++L + +VA L +G + ++ + +VI
Sbjct: 223 DVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVI 282
Query: 260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK 299
+ D+E + A++ + K+ VEP+ LAAV S +K
Sbjct: 283 S--DQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQK 320
>pdb|2RKB|A Chain A, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|B Chain B, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|C Chain C, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|D Chain D, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|E Chain E, Serine Dehydratase Like-1 From Human Cancer Cells
Length = 318
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 134/281 (47%), Gaps = 18/281 (6%)
Query: 29 TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88
TP+L S L+ ++G +F KCE Q G+FK RG + + + + + +V S GN
Sbjct: 8 TPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAK-KGCRHLVCSSGGNAG 66
Query: 89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV-----IWSEATMHSRESVASKVL 143
A + AA+ GIPA IV+P++ V+ + G +V +W EA + ++E +
Sbjct: 67 IAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQE-----LA 121
Query: 144 EETGAVLVHPYNDGRIISGQGTI--SLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIK 201
+ G V P++ I G ++ L+ + + P ++ GG L VA +
Sbjct: 122 KRDGWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGW 181
Query: 202 PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL---GDLTWPIVRDLVDDV 258
+ I+A E GA+ + AG+++TL + +VA L A L V + +V
Sbjct: 182 QHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEV 241
Query: 259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK 299
VED E + A++ + ++ VEP+ LAA+ S R+
Sbjct: 242 --VEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRR 280
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 45 LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
L KCE F GG+ K R + + + D +K ++ +SGN L+LAA +RG
Sbjct: 62 LLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYR 121
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRES---VASKVLEE--TGAVLVHPY 154
IV+P+ KV+ + G +++ + A S ES VA ++ E +L
Sbjct: 122 CIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYR 181
Query: 155 NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213
N ++ T + E L+Q LD ++ + GG I+G+A K P RI+ +P G
Sbjct: 182 NASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG 241
Query: 214 A 214
+
Sbjct: 242 S 242
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 45/261 (17%)
Query: 26 IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-GVVTHSS 84
I TP++ ++++S +F K E GG+ K R A +L ++ +K G+V +S
Sbjct: 18 IGSTPIVRLDSIDS----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTS 73
Query: 85 GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESV--ASKV 142
GN A+++ RG + +P+ + + + G +++ + + + +V A ++
Sbjct: 74 GNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEI 133
Query: 143 LEETGAVLVH----PYNDGRIISGQGTISLEFLEQVPL-LDTIIVPISGGGLISGVALAA 197
ETGA +++ PYN + S Q T E L+Q+ +D + + GG ISGV
Sbjct: 134 SRETGAHMLNQFENPYN---VYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVL 190
Query: 198 KSI-KPAIRILAAEPIGA---------NDAAQSKAAGRIITLLETNTVADGLRAFLGDLT 247
K ++I+A EP + A Q AG + +L+
Sbjct: 191 KGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILD---------------- 234
Query: 248 WPIVRDLVDDVITVEDKEIIE 268
R ++D+VITVED+E E
Sbjct: 235 ----RSVIDEVITVEDEEAYE 251
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 45 LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
L KCE F GG+ K R + + + D +K ++ +SGN L+LAA +RG
Sbjct: 127 LLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYR 186
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRES---VASKVLEE--TGAVLVHPY 154
IV+P+ KV+ + G +++ + A S ES VA ++ E +L
Sbjct: 187 CIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYR 246
Query: 155 NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213
N ++ T + E L+Q LD ++ + GG I+G+A K P RI+ +P G
Sbjct: 247 NASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG 306
Query: 214 A 214
+
Sbjct: 307 S 307
>pdb|1P5J|A Chain A, Crystal Structure Analysis Of Human Serine Dehydratase
Length = 372
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 13/280 (4%)
Query: 28 KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
KTP+ S L+ M+G S++ K + Q G+FK RG + + Q V S+GN
Sbjct: 46 KTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSAGNA 104
Query: 88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV-IWSEATMHSRESVASKVLEET 146
A + AA+ G+PA IV+P P +E + G + E + E +
Sbjct: 105 GMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNP 164
Query: 147 GAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPA--- 203
G V + P++D I G +I E E L + G + + ++
Sbjct: 165 GWVYIPPFDDPLIWEGHASIVKELKET--LWEKPGAIALSVGGGGLLCGVVQGLQECGWG 222
Query: 204 -IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRD--LVDDVI 259
+ ++A E GA+ + AG++++L + +VA L +G + ++ + +VI
Sbjct: 223 DVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVI 282
Query: 260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK 299
+ D+E + A++ + K+ VEP+ LAAV S +K
Sbjct: 283 S--DQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQK 320
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 45/261 (17%)
Query: 26 IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-GVVTHSS 84
I TP++ ++++S + K E GG+ K R A +L ++ +K G+V +S
Sbjct: 6 IGSTPIVRLDSIDS----RIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTS 61
Query: 85 GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESV--ASKV 142
GN A+++ RG + +P+ + + + G +++ + + + +V A ++
Sbjct: 62 GNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEI 121
Query: 143 LEETGAVLVH----PYNDGRIISGQGTISLEFLEQVPL-LDTIIVPISGGGLISGVALAA 197
ETGA +++ PYN + S Q T E L+Q+ +D + + GG ISGV
Sbjct: 122 SRETGAHMLNQFENPYN---VYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVL 178
Query: 198 KSI-KPAIRILAAEPIGA---------NDAAQSKAAGRIITLLETNTVADGLRAFLGDLT 247
K ++I+A EP + A Q AG + +L+
Sbjct: 179 KGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILD---------------- 222
Query: 248 WPIVRDLVDDVITVEDKEIIE 268
R ++D+VITVED+E E
Sbjct: 223 ----RSVIDEVITVEDEEAYE 239
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 45 LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
++ KCE GG+ K R V +E +K ++ +SGN L++A ++G
Sbjct: 79 MYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYK 138
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRES---VASKVLEET-GAVLVHPY- 154
IV+P+ KV + G ++I +EA S E VA ++ ET ++++ Y
Sbjct: 139 CIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYR 198
Query: 155 NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213
N G ++ + E L Q+ +D I+V G ISG+ K P+ +I+ +P G
Sbjct: 199 NAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYG 258
Query: 214 A 214
+
Sbjct: 259 S 259
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 129/302 (42%), Gaps = 20/302 (6%)
Query: 12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRS--LFFKCECFQKGGAFKFRGASNAVLS 69
+ + E ++LY TP++ ++ L G ++ K E G+FK RG + A+ S
Sbjct: 14 YLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAI-S 72
Query: 70 LDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC-KVENVVRYGGQVIWS 128
+ + V+ S+GN +A+ + A G+ AY+++PK A K+ + YG +V+
Sbjct: 73 KAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAI 132
Query: 129 EATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEF---LEQVPLLDTIIVPIS 185
+ T ++ K+ E +V+ N R I GQ T + E L + P D +P+
Sbjct: 133 QGTFDDALNIVRKIGENFPVEIVNSVNPYR-IEGQKTAAFEICDTLGEAP--DYHFIPVG 189
Query: 186 GGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD 245
G I+ K +I + A + + + T+A ++ +G+
Sbjct: 190 NAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIK--IGN 247
Query: 246 -LTWPIVRDLVDD----VITVEDKEIIEAMKLCYEILKVAVEPSGA---IGLAAVLSDGF 297
+W + + V D EI+ A KL V EP+ A GL ++ +GF
Sbjct: 248 PYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGF 307
Query: 298 RK 299
K
Sbjct: 308 FK 309
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVL-SLDEDQAIKGVV 80
++L TP++++ L+ +G ++ K E G+FK RG + AV +L Q + V+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ--RAVL 89
Query: 81 THSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEATMHSRESVA 139
S+GN +A+ + A GI ++IP+ K+ V +G ++I + +A
Sbjct: 90 CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELA 149
Query: 140 SKVLEETGAV-LVHPYNDGRIISGQGTISLEFLE 172
K+ + + LV+ N R I GQ T + E ++
Sbjct: 150 RKMAADFPTISLVNSVNPVR-IEGQKTAAFEIVD 182
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 6 EKYAANFSSIKEAQKRISLYIHKTPV--LSSETLNSMSGRSLFFKCECFQKGGAFKFRGA 63
E+Y N + E ISL TP+ L G L+ K E G+FK RG
Sbjct: 7 ERYR-NLLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGM 65
Query: 64 SNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC-KVENVVRYG 122
+ AV E A + V S+GN AA+ + A GI A +V+P KV + +G
Sbjct: 66 TLAVSKAVEGGA-QAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHG 124
Query: 123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV 174
+++ E + K+ E LV+ N R + GQ T++ E ++++
Sbjct: 125 ARIVQVEGNFDDALRLTQKLTEAFPVALVNSVNPHR-LEGQKTLAFEVVDEL 175
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 45 LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
L+ K E G+ K R A + + D ++ ++ +SGN +L++AA+L+G
Sbjct: 37 LWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYR 96
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVAS-KVLEETGAVLVHPYNDG 157
V+P+N + + + YG Q+I+S A S +VA+ K L T V Y G
Sbjct: 97 LICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYG 153
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 45 LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
L+ K E G+ K R A + + D ++ ++ +SGN +L++AA+L+G
Sbjct: 39 LWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYR 98
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVAS-KVLEETGAVLVHPYNDG 157
V+P+N + + + YG Q+I+S A S +VA+ K L T V Y G
Sbjct: 99 LICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYG 155
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 26 IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTH 82
I TP++ + + +G ++ K E G+ K R A + ++ ++ IK ++
Sbjct: 8 IGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEA 67
Query: 83 SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRESVAS 140
+SGN AL++ A L+G +++P N + + + YG ++I E M +A
Sbjct: 68 TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLAL 127
Query: 141 KVLEETGAVLVHPYND 156
+ E L+ +N+
Sbjct: 128 AMSERGEGKLLDQFNN 143
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 26 IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTH 82
I TP++ + + +G ++ K E G+ K R A + ++ ++ IK ++
Sbjct: 8 IGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEA 67
Query: 83 SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRESVAS 140
+SGN AL++ A L+G +++P N + + + YG ++I E M +A
Sbjct: 68 TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLAL 127
Query: 141 KVLEETGAVLVHPYND 156
++ L+ +N+
Sbjct: 128 EMANRGEGKLLDQFNN 143
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 45 LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
L+ K E G+ R A + + D ++ ++ +SGN +L++AA+L+G
Sbjct: 40 LWAKLEDRNPTGSIXDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYR 99
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVAS-KVLEETGAVLVHPYNDG 157
V+P+N + + + YG Q+I+S A S +VA+ K L T V Y G
Sbjct: 100 LICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYG 156
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 26 IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTH 82
I TP++ + + +G ++ K E G+ R A + ++ ++ IK ++
Sbjct: 8 IGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDVLIEA 67
Query: 83 SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRESVAS 140
+SGN AL++ A L+G +++P N + + + YG ++I E M +A
Sbjct: 68 TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLAL 127
Query: 141 KVLEETGAVLVHPYND 156
++ L+ +N+
Sbjct: 128 EMANRGEGKLLDQFNN 143
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 26 IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTH 82
I TP++ + + +G ++ K E G+ R A + ++ ++ IK ++
Sbjct: 8 IGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDVLIEA 67
Query: 83 SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRESVAS 140
+SGN AL++ A L+G +++P N + + + YG ++I E M +A
Sbjct: 68 TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLAL 127
Query: 141 KVLEETGAVLVHPYND 156
++ L+ +N+
Sbjct: 128 EMANRGEGKLLDQFNN 143
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 116/274 (42%), Gaps = 22/274 (8%)
Query: 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFR-GASNAV 67
AA F + + I I +TP L LN+ + + K EC + K R G +
Sbjct: 23 AAPFDKSRNVAQSIDQLIGQTPALYLNKLNNTKAK-VVLKMECENPMASVKDRLGFAIYD 81
Query: 68 LSLDEDQAIKG---VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124
+ E + I G VV SSGN +L+ +RG I +P++ + + +G +
Sbjct: 82 KAEKEGKLIPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAE 141
Query: 125 VIWSEATMHSRESV--ASKVLE-ETGAVLVHPY-NDGRIISGQGTISLEFLEQVPL-LDT 179
VI + A + + +V A K++ AVL + + + T E EQ +D
Sbjct: 142 VILTPAALGMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDC 201
Query: 180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGL 239
I + GG ++GVA A K + RI+A EP+ + + K I + V D L
Sbjct: 202 FIAGVGTGGTLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVL 261
Query: 240 RAFLGDLTWPIVRDLVDDVITVEDKEIIE-AMKL 272
R L+D+V V + IE A+KL
Sbjct: 262 D-----------RSLIDEVFCVAGDDAIETALKL 284
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 9/204 (4%)
Query: 21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG-- 78
R+ I KTPV+ + ++ K E GG+ K R A + +E ++
Sbjct: 2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS 61
Query: 79 ---VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS--EATMH 133
+V +SGN L++ A RG + +P + + + +G +++ + E M
Sbjct: 62 GQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRML 121
Query: 134 SRESVASKVLEETGAVLVHPY-NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLIS 191
+ A ++ EE GA + + N + + T E E + +D + GG I+
Sbjct: 122 AAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 192 GVALAAKSIKPAIRILAAEPIGAN 215
GV K P ++++A EP +N
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSN 205
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 113/274 (41%), Gaps = 22/274 (8%)
Query: 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFR-GASNAV 67
AA F K + I I +TP L LN+ + + K EC + R G +
Sbjct: 2 AAPFDKSKNVAQSIDQLIGQTPALYLNKLNNTKAK-VVLKMECENPMASVXDRLGFAIYD 60
Query: 68 LSLDEDQAIKG---VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124
+ E + I G VV SSGN +L+ +RG I +P++ + + +G +
Sbjct: 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAE 120
Query: 125 VIWSEATMHSRESVASK---VLEETGAVLVHPY-NDGRIISGQGTISLEFLEQVPL-LDT 179
VI + A + + +VA V AVL + + + T E EQ +D
Sbjct: 121 VILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDC 180
Query: 180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGL 239
I + GG ++GVA A K + RI+A EP + + K I + V D L
Sbjct: 181 FIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVL 240
Query: 240 RAFLGDLTWPIVRDLVDDVITVEDKEIIE-AMKL 272
R L+D+V+ V + IE A+KL
Sbjct: 241 D-----------RSLIDEVLCVAGDDAIETALKL 263
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 125/287 (43%), Gaps = 44/287 (15%)
Query: 16 KEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKG-GAFKFRGASNAV------ 67
++ ++I+ Y TP+ + + L ++ G + + K E + G AFK G + A+
Sbjct: 33 RQFHQKIAGY-RPTPLCALDDLANLFGVKKILVKDESKRFGLNAFKMLGGAYAIAQLLCE 91
Query: 68 --------LSLDEDQAIKG----VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKV 115
LS + + G T + GNH ++ AA+ G A I +PK + + +V
Sbjct: 92 KYHLDIETLSFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERV 151
Query: 116 ENVVRYGGQVIWSEA--------TMHSRESVASKVLEET---GAVLVHPYNDGRIISGQG 164
+ ++ G + I ++ TM + +V+++T G + + I+ G
Sbjct: 152 DAILNLGAECIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTW----IMQGYA 207
Query: 165 TISLEFLEQVP---LLDTIIVPISGGGLISGVALA--AKSIKPA-IRILAAEPIGANDAA 218
T++ E +EQ+ + T ++ +G G ++G L P + + EP A+
Sbjct: 208 TLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIY 267
Query: 219 QSKAAGRIITL-LETNTVADGLRAFLGD-LTWPIVRDLVDDVITVED 263
+S G I+ + + T+ GL + L W I+R+ I+ +D
Sbjct: 268 RSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQD 314
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 125/287 (43%), Gaps = 44/287 (15%)
Query: 16 KEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKG-GAFKFRGASNAV------ 67
++ ++I+ Y TP+ + + L ++ G + + K E + G AFK G + A+
Sbjct: 33 RQFHQKIAGY-RPTPLXALDDLANLFGVKKILVKDESKRFGLNAFKMLGGAYAIAQLLCE 91
Query: 68 --------LSLDEDQAIKG----VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKV 115
LS + + G T + GNH ++ AA+ G A I +PK + + +V
Sbjct: 92 KYHLDIETLSFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERV 151
Query: 116 ENVVRYGGQVIWSEA--------TMHSRESVASKVLEET---GAVLVHPYNDGRIISGQG 164
+ ++ G + I ++ TM + +V+++T G + + I+ G
Sbjct: 152 DAILNLGAECIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTW----IMQGYA 207
Query: 165 TISLEFLEQVP---LLDTIIVPISGGGLISGVALA--AKSIKPA-IRILAAEPIGANDAA 218
T++ E +EQ+ + T ++ +G G ++G L P + + EP A+
Sbjct: 208 TLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIY 267
Query: 219 QSKAAGRIITL-LETNTVADGLRAFLGD-LTWPIVRDLVDDVITVED 263
+S G I+ + + T+ GL + L W I+R+ I+ +D
Sbjct: 268 RSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQD 314
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 81 THSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--------TM 132
T + GNH ++ AA+ G A I +PK + + +V+ ++ G + I ++ TM
Sbjct: 117 TTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTM 176
Query: 133 HSRESVASKVLEET---GAVLVHPYNDGRIISGQGTISLEFLEQVP---LLDTIIVPISG 186
+ +V+++T G + + I+ G T++ E +EQ+ + T ++ +G
Sbjct: 177 QHAQQHGWEVVQDTAWEGYTKIPTW----IMQGYATLADEAVEQMREMGVTPTHVLLQAG 232
Query: 187 GGLISGVALA--AKSIKPA-IRILAAEPIGANDAAQSKAAGRIITL-LETNTVADGLRAF 242
G ++G L P + + EP A+ +S G I+ + + T+ GL
Sbjct: 233 VGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLACG 292
Query: 243 LGD-LTWPIVRDLVDDVITVED 263
+ L W I+R+ I+ +D
Sbjct: 293 EPNPLGWEILRNCATQFISCQD 314
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 9/198 (4%)
Query: 22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---G 78
I+ I TP + + ++ K E G + K R A + + ++ +K
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR-YGGQVIWSEATMHSRES 137
+V +SGN L++ A +G A +V+P + N++R YG +++ + R +
Sbjct: 68 IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTM-SLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 138 VA--SKVLEETGAVLVHPY-NDGRIISGQGTISLEFLEQV-PLLDTIIVPISGGGLISGV 193
+A +++ E G + + N+ + T E +EQ+ LD + + GG I+G
Sbjct: 127 IAKAEELVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGA 186
Query: 194 ALAAKSIKPAIRILAAEP 211
+ P I+I A EP
Sbjct: 187 GKVLREAYPNIKIYAVEP 204
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 56 GAFKFRGASNAVLSLDEDQAIK----GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA- 110
G+FK G + V ++ + K GV S+G+ +AALS GIP+ + +P N
Sbjct: 160 GSFKDLGXTVLVSQVNRLRKXKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI 219
Query: 111 PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEF 170
++ + G V+ + + ++ E L + N R + GQ T ++E
Sbjct: 220 SXAQLVQPIANGAFVLSIDTDFDGCXKLIREITAELPIYLANSLNSLR-LEGQKTAAIEI 278
Query: 171 LEQV--PLLDTIIVPISGGGL 189
L+Q + D +IVP GG L
Sbjct: 279 LQQFDWQVPDWVIVP--GGNL 297
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
Length = 486
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 74 QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR---YGGQVIWSEA 130
+ + GV S+G+ +AALS GIP+ + +P N K + +V+ G V+ +
Sbjct: 182 RPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPAN--KISMAQLVQPIANGAFVLSIDT 239
Query: 131 TMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLE----QVPLLDTIIVPISG 186
+ ++ E L + N R + GQ T ++E L+ QVP D +IVP G
Sbjct: 240 DFDGCMKLIREITAELPIYLANSLNSLR-LEGQKTAAIEILQQFDWQVP--DWVIVP--G 294
Query: 187 GGL 189
G L
Sbjct: 295 GNL 297
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAI-- 76
+K +S I +TP++ + G + K E Q + K R A + +E I
Sbjct: 26 KKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLITP 85
Query: 77 --KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129
++ +SGN +++ A ++G + +P + + +G ++I ++
Sbjct: 86 GKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTD 140
>pdb|2FEZ|A Chain A, Mycobacterium Tuberculosis Embr
pdb|2FF4|A Chain A, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
pdb|2FF4|B Chain B, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
Length = 388
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 205 RILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR--AFLGDL 246
RIL +P+ A +A++ AAG +T+L+ T+A G + A+L D+
Sbjct: 253 RILRQQPLDAKKSAKTTAAG-TVTVLDQRTMASGQQAVAYLHDI 295
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2ARZ|B Chain B, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
Length = 247
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 74 QAIKGVVTHSSGNHAAALSLAAKLRGIPAY 103
+A +G+V H + +HAAA++ +L G+PA+
Sbjct: 161 EAERGMVEHMNSDHAAAIAHYVELAGLPAH 190
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 81 THSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126
T + GNH ++ AA+ G A I PK + + +V+ ++ G + I
Sbjct: 117 TTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECI 162
>pdb|2D59|A Chain A, Hypothetical Protein From Pyrococcus Horikoshii Ot3
pdb|2D5A|A Chain A, Hypothetical Protein From Pyrococcus Horikoshii Ot3
pdb|2E6U|X Chain X, Crystal Structure Of Hypothetical Protein Ph1109 From
Pyrococcus Horikoshii
Length = 144
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 115 VENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLV 151
VE ++ G +V+W + ++RE ASK +E G ++V
Sbjct: 94 VEQAIKKGAKVVWFQYNTYNRE--ASKKADEAGLIIV 128
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 87 HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
+ A AA RG+ A+++ P+N P K N+ + G
Sbjct: 171 YYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLEKLG 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,299,929
Number of Sequences: 62578
Number of extensions: 367710
Number of successful extensions: 1074
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 59
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)