Query 020236
Match_columns 329
No_of_seqs 177 out of 1277
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02970 serine racemase 100.0 9.6E-71 2.1E-75 507.1 37.4 327 2-329 1-328 (328)
2 COG1171 IlvA Threonine dehydra 100.0 2.2E-70 4.7E-75 492.7 36.1 320 6-329 3-326 (347)
3 PRK08526 threonine dehydratase 100.0 2.3E-69 5.1E-74 508.2 35.5 317 9-329 1-318 (403)
4 PRK07048 serine/threonine dehy 100.0 3E-68 6.5E-73 490.2 36.9 315 9-328 5-320 (321)
5 PRK08638 threonine dehydratase 100.0 1.3E-67 2.7E-72 486.0 36.5 317 10-329 9-326 (333)
6 PRK06382 threonine dehydratase 100.0 8.4E-68 1.8E-72 500.6 35.6 315 10-329 7-322 (406)
7 PRK07476 eutB threonine dehydr 100.0 1.9E-67 4.1E-72 484.7 36.4 315 10-329 1-318 (322)
8 PRK08198 threonine dehydratase 100.0 1.7E-67 3.7E-72 499.7 35.7 314 10-328 4-318 (404)
9 TIGR02991 ectoine_eutB ectoine 100.0 3.5E-67 7.5E-72 481.0 35.2 313 10-328 1-316 (317)
10 PRK06110 hypothetical protein; 100.0 6.4E-67 1.4E-71 481.1 35.9 314 9-328 2-317 (322)
11 PRK08639 threonine dehydratase 100.0 7.1E-67 1.5E-71 495.9 36.2 315 10-329 7-328 (420)
12 TIGR02079 THD1 threonine dehyd 100.0 7.7E-67 1.7E-71 493.3 35.0 312 13-329 1-317 (409)
13 PRK12483 threonine dehydratase 100.0 8.4E-67 1.8E-71 501.0 33.7 307 20-329 29-337 (521)
14 PRK06815 hypothetical protein; 100.0 3.4E-66 7.4E-71 475.3 35.9 311 12-327 4-316 (317)
15 PRK08813 threonine dehydratase 100.0 4.5E-66 9.9E-71 474.4 33.3 307 2-328 13-320 (349)
16 PLN02550 threonine dehydratase 100.0 2.6E-66 5.6E-71 500.0 32.2 305 21-328 102-408 (591)
17 TIGR01124 ilvA_2Cterm threonin 100.0 6.4E-66 1.4E-70 495.6 34.7 306 21-329 10-317 (499)
18 PRK07334 threonine dehydratase 100.0 2.2E-65 4.7E-70 484.0 34.9 313 9-328 4-317 (403)
19 PRK09224 threonine dehydratase 100.0 2E-65 4.4E-70 494.2 34.4 307 20-329 12-320 (504)
20 PRK06608 threonine dehydratase 100.0 5.8E-65 1.3E-69 469.2 35.2 313 9-328 4-320 (338)
21 PRK08246 threonine dehydratase 100.0 5.2E-65 1.1E-69 465.6 33.8 305 9-323 4-309 (310)
22 TIGR01127 ilvA_1Cterm threonin 100.0 5.7E-65 1.2E-69 479.0 33.4 295 29-328 1-296 (380)
23 cd01562 Thr-dehyd Threonine de 100.0 9.8E-65 2.1E-69 464.6 34.1 303 12-319 1-304 (304)
24 cd06448 L-Ser-dehyd Serine deh 100.0 1.1E-64 2.3E-69 464.4 33.8 301 28-328 1-314 (316)
25 KOG1251 Serine racemase [Signa 100.0 9E-65 1.9E-69 425.7 27.5 313 7-324 4-317 (323)
26 KOG1250 Threonine/serine dehyd 100.0 1.5E-64 3.3E-69 450.8 28.6 313 12-328 50-364 (457)
27 PRK02991 D-serine dehydratase; 100.0 4.6E-63 1E-67 467.6 31.7 327 2-328 33-435 (441)
28 PRK08206 diaminopropionate amm 100.0 2.5E-62 5.4E-67 460.8 33.9 320 9-328 23-394 (399)
29 PRK07591 threonine synthase; V 100.0 5.6E-62 1.2E-66 461.8 32.5 303 22-327 83-401 (421)
30 COG0031 CysK Cysteine synthase 100.0 2.7E-62 5.8E-67 433.0 25.0 285 21-321 4-299 (300)
31 PRK08197 threonine synthase; V 100.0 2.8E-61 6E-66 454.7 31.4 303 22-327 73-391 (394)
32 cd06447 D-Ser-dehyd D-Serine d 100.0 1.3E-60 2.9E-65 445.6 32.0 308 10-319 18-402 (404)
33 TIGR01747 diampropi_NH3ly diam 100.0 2.6E-60 5.6E-65 442.7 33.2 315 12-327 7-374 (376)
34 PRK06260 threonine synthase; V 100.0 1.7E-60 3.7E-65 449.8 31.2 300 22-325 61-376 (397)
35 PLN02565 cysteine synthase 100.0 7.2E-61 1.6E-65 439.2 27.3 290 19-322 6-305 (322)
36 cd01563 Thr-synth_1 Threonine 100.0 2E-60 4.3E-65 439.5 30.1 295 21-319 15-324 (324)
37 TIGR02035 D_Ser_am_lyase D-ser 100.0 7E-60 1.5E-64 444.2 34.1 320 4-325 30-428 (431)
38 PLN02356 phosphateglycerate ki 100.0 1.6E-60 3.4E-65 444.7 29.3 299 19-324 44-401 (423)
39 PRK06352 threonine synthase; V 100.0 4.6E-60 1E-64 439.4 29.5 296 21-327 21-328 (351)
40 PRK11761 cysM cysteine synthas 100.0 3.3E-60 7.3E-65 430.9 27.0 281 19-322 3-291 (296)
41 PLN03013 cysteine synthase 100.0 8.6E-60 1.9E-64 439.8 30.0 293 18-324 113-416 (429)
42 PRK10717 cysteine synthase A; 100.0 3.3E-60 7.2E-65 438.4 26.2 297 19-324 4-316 (330)
43 TIGR03528 2_3_DAP_am_ly diamin 100.0 5.7E-59 1.2E-63 436.5 33.6 315 12-327 26-393 (396)
44 PRK07409 threonine synthase; V 100.0 3.1E-59 6.6E-64 435.3 29.7 297 22-328 25-333 (353)
45 PRK06381 threonine synthase; V 100.0 6.5E-59 1.4E-63 428.2 30.9 289 24-317 11-318 (319)
46 TIGR01136 cysKM cysteine synth 100.0 1.8E-59 3.8E-64 428.1 26.1 287 23-323 2-297 (299)
47 PRK06450 threonine synthase; V 100.0 5.3E-59 1.1E-63 428.9 28.8 274 22-319 52-337 (338)
48 PRK06721 threonine synthase; R 100.0 1.6E-58 3.4E-63 429.6 31.3 294 21-324 21-325 (352)
49 PLN02569 threonine synthase 100.0 1.9E-58 4.1E-63 440.8 31.8 298 22-323 127-445 (484)
50 cd01561 CBS_like CBS_like: Thi 100.0 5.7E-59 1.2E-63 423.5 26.5 280 27-321 1-291 (291)
51 PLN02556 cysteine synthase/L-3 100.0 7.2E-59 1.6E-63 431.8 27.7 291 18-322 49-349 (368)
52 TIGR01138 cysM cysteine syntha 100.0 1.2E-58 2.7E-63 419.7 27.8 278 22-322 2-287 (290)
53 PRK08329 threonine synthase; V 100.0 4.4E-58 9.6E-63 425.8 30.9 277 24-319 60-346 (347)
54 PLN00011 cysteine synthase 100.0 1.9E-58 4.1E-63 424.6 27.7 295 14-322 3-307 (323)
55 TIGR01139 cysK cysteine syntha 100.0 8.9E-59 1.9E-63 423.4 25.4 283 23-322 2-295 (298)
56 PRK05638 threonine synthase; V 100.0 3.9E-58 8.4E-63 439.1 30.1 290 22-320 60-359 (442)
57 TIGR00260 thrC threonine synth 100.0 3.9E-57 8.4E-62 418.3 30.5 297 21-320 16-327 (328)
58 TIGR01137 cysta_beta cystathio 100.0 2E-56 4.3E-61 431.0 24.6 295 20-324 3-310 (454)
59 TIGR03844 cysteate_syn cysteat 100.0 1.3E-55 2.8E-60 413.7 27.5 294 25-321 59-384 (398)
60 TIGR00263 trpB tryptophan synt 100.0 7.2E-55 1.6E-59 408.8 29.3 316 6-326 27-384 (385)
61 PLN02618 tryptophan synthase, 100.0 5.7E-55 1.2E-59 407.5 27.7 310 11-327 48-406 (410)
62 PRK13028 tryptophan synthase s 100.0 1.3E-54 2.8E-59 405.2 27.7 303 21-328 54-398 (402)
63 PRK04346 tryptophan synthase s 100.0 2E-54 4.4E-59 403.3 28.7 302 22-328 51-394 (397)
64 cd06446 Trp-synth_B Tryptophan 100.0 3.8E-54 8.2E-59 402.1 26.6 307 11-323 16-365 (365)
65 cd00640 Trp-synth-beta_II Tryp 100.0 1.1E-53 2.3E-58 379.6 26.8 239 29-316 1-244 (244)
66 PF00291 PALP: Pyridoxal-phosp 100.0 1.2E-54 2.6E-59 398.3 20.5 288 22-315 1-306 (306)
67 TIGR01415 trpB_rel pyridoxal-p 100.0 1.7E-53 3.6E-58 401.0 28.1 302 23-328 62-417 (419)
68 KOG1252 Cystathionine beta-syn 100.0 2.3E-54 5E-59 379.9 18.6 294 18-323 42-348 (362)
69 PRK12391 tryptophan synthase s 100.0 1E-52 2.2E-57 396.2 28.2 307 19-328 68-426 (427)
70 PRK03910 D-cysteine desulfhydr 100.0 9.6E-54 2.1E-58 395.3 18.8 298 21-327 8-329 (331)
71 PRK13803 bifunctional phosphor 100.0 6.9E-52 1.5E-56 407.6 27.9 306 18-328 260-606 (610)
72 PRK13802 bifunctional indole-3 100.0 1.5E-51 3.2E-56 404.1 28.3 302 21-327 318-673 (695)
73 KOG1481 Cysteine synthase [Ami 100.0 1.9E-52 4.1E-57 357.4 18.0 298 23-325 44-368 (391)
74 TIGR01275 ACC_deam_rel pyridox 100.0 7E-52 1.5E-56 380.3 19.9 282 26-319 5-303 (311)
75 PRK12390 1-aminocyclopropane-1 100.0 9.2E-52 2E-56 383.0 20.8 297 20-325 7-333 (337)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 2.4E-51 5.2E-56 380.0 21.9 299 20-327 6-334 (337)
77 cd06449 ACCD Aminocyclopropane 100.0 1.3E-51 2.8E-56 377.6 18.6 279 29-316 1-307 (307)
78 COG0498 ThrC Threonine synthas 100.0 3E-50 6.6E-55 373.3 24.1 291 27-325 75-381 (411)
79 PRK14045 1-aminocyclopropane-1 100.0 3.7E-47 8E-52 350.7 18.7 287 18-317 11-315 (329)
80 PRK09225 threonine synthase; V 100.0 7.8E-41 1.7E-45 317.3 28.1 301 10-327 67-422 (462)
81 cd01560 Thr-synth_2 Threonine 100.0 1.3E-39 2.7E-44 309.3 28.0 304 10-328 66-427 (460)
82 COG0133 TrpB Tryptophan syntha 100.0 1.3E-38 2.9E-43 277.4 17.2 302 22-328 49-391 (396)
83 COG2515 Acd 1-aminocyclopropan 100.0 1.9E-35 4.1E-40 257.4 18.3 291 19-319 6-315 (323)
84 KOG1395 Tryptophan synthase be 100.0 5.5E-35 1.2E-39 257.3 18.1 314 10-328 103-459 (477)
85 COG1350 Predicted alternative 100.0 2.7E-32 5.9E-37 238.5 18.6 301 27-328 77-427 (432)
86 COG3048 DsdA D-serine dehydrat 99.9 6.4E-26 1.4E-30 196.9 20.0 319 10-328 44-440 (443)
87 KOG2616 Pyridoxalphosphate-dep 96.4 0.011 2.4E-07 50.3 6.7 96 199-295 55-185 (266)
88 PF03808 Glyco_tran_WecB: Glyc 94.3 0.16 3.5E-06 42.3 6.9 118 88-209 13-133 (172)
89 cd06533 Glyco_transf_WecG_TagA 90.3 1.6 3.4E-05 36.4 7.7 117 88-209 11-131 (171)
90 PRK10669 putative cation:proto 86.1 39 0.00084 33.7 16.4 97 76-210 417-515 (558)
91 PF07279 DUF1442: Protein of u 85.6 13 0.00029 32.0 10.4 48 76-123 42-94 (218)
92 PRK03562 glutathione-regulated 85.3 16 0.00034 37.1 12.7 98 76-211 400-499 (621)
93 KOG0025 Zn2+-binding dehydroge 85.1 5.1 0.00011 36.2 7.8 87 44-130 124-217 (354)
94 PRK03659 glutathione-regulated 84.8 47 0.001 33.6 16.2 100 76-213 400-501 (601)
95 TIGR00696 wecB_tagA_cpsF bacte 84.0 4.3 9.3E-05 34.0 6.7 116 88-209 13-132 (177)
96 PF05368 NmrA: NmrA-like famil 83.0 5.5 0.00012 34.5 7.4 51 79-130 2-52 (233)
97 PF00764 Arginosuc_synth: Argi 80.4 16 0.00034 34.7 9.7 127 79-208 1-138 (388)
98 PRK09424 pntA NAD(P) transhydr 79.6 34 0.00075 33.7 12.2 52 76-130 165-216 (509)
99 PF00107 ADH_zinc_N: Zinc-bind 78.4 6.3 0.00014 30.5 5.7 39 169-210 49-89 (130)
100 cd08230 glucose_DH Glucose deh 77.8 10 0.00022 35.2 7.8 50 77-126 174-223 (355)
101 PRK07523 gluconate 5-dehydroge 76.7 20 0.00042 31.3 9.0 57 75-131 10-67 (255)
102 TIGR03366 HpnZ_proposed putati 76.6 24 0.00052 31.5 9.6 50 76-127 121-170 (280)
103 PRK03692 putative UDP-N-acetyl 76.2 11 0.00024 33.3 7.1 94 89-188 70-169 (243)
104 TIGR00670 asp_carb_tr aspartat 76.2 15 0.00032 33.6 8.1 117 11-130 84-209 (301)
105 TIGR01832 kduD 2-deoxy-D-gluco 76.0 24 0.00052 30.5 9.3 70 75-145 5-77 (248)
106 PRK07324 transaminase; Validat 75.5 31 0.00068 32.3 10.5 73 55-131 62-134 (373)
107 COG0800 Eda 2-keto-3-deoxy-6-p 75.0 20 0.00042 30.9 7.9 78 72-154 35-113 (211)
108 TIGR03538 DapC_gpp succinyldia 74.9 42 0.00092 31.6 11.3 53 78-130 92-145 (393)
109 PRK07097 gluconate 5-dehydroge 74.8 23 0.00049 31.2 8.9 56 76-131 11-67 (265)
110 PF00070 Pyr_redox: Pyridine n 74.6 20 0.00042 25.3 6.9 48 79-126 2-58 (80)
111 PRK10936 TMAO reductase system 74.3 72 0.0016 29.4 16.2 52 169-225 224-277 (343)
112 PRK08340 glucose-1-dehydrogena 72.7 24 0.00051 30.9 8.5 29 78-106 3-31 (259)
113 PF04127 DFP: DNA / pantothena 71.9 14 0.00031 31.1 6.4 63 79-148 22-85 (185)
114 PF01210 NAD_Gly3P_dh_N: NAD-d 69.9 7.7 0.00017 31.6 4.3 31 79-109 2-32 (157)
115 PRK05866 short chain dehydroge 69.6 33 0.00071 30.9 8.8 55 76-130 41-96 (293)
116 TIGR00561 pntA NAD(P) transhyd 69.0 89 0.0019 30.9 12.0 51 77-130 165-215 (511)
117 PRK12743 oxidoreductase; Provi 67.8 30 0.00065 30.2 8.1 69 77-145 4-77 (256)
118 PRK12823 benD 1,6-dihydroxycyc 67.7 34 0.00073 29.8 8.4 70 76-145 9-81 (260)
119 PRK09147 succinyldiaminopimela 67.0 47 0.001 31.3 9.7 53 78-130 92-146 (396)
120 PRK07814 short chain dehydroge 66.8 37 0.00079 29.8 8.4 33 75-107 10-42 (263)
121 PRK12939 short chain dehydroge 66.7 44 0.00095 28.7 8.8 56 76-131 8-64 (250)
122 TIGR02825 B4_12hDH leukotriene 66.6 42 0.0009 30.5 9.0 46 79-127 143-188 (325)
123 PRK06935 2-deoxy-D-gluconate 3 66.3 46 0.001 29.0 8.9 71 75-145 15-88 (258)
124 PF01041 DegT_DnrJ_EryC1: DegT 66.1 15 0.00032 34.4 6.0 57 75-131 39-95 (363)
125 PRK12481 2-deoxy-D-gluconate 3 65.8 45 0.00097 29.1 8.7 70 75-145 8-80 (251)
126 PF00106 adh_short: short chai 65.6 56 0.0012 26.1 8.7 68 78-145 3-77 (167)
127 PRK12429 3-hydroxybutyrate deh 65.4 54 0.0012 28.3 9.2 56 76-131 5-61 (258)
128 PF04122 CW_binding_2: Putativ 65.0 51 0.0011 23.9 8.6 74 56-130 5-81 (92)
129 PF00185 OTCace: Aspartate/orn 64.8 17 0.00037 29.7 5.4 46 84-129 12-65 (158)
130 PRK08993 2-deoxy-D-gluconate 3 63.5 70 0.0015 27.8 9.5 70 75-145 10-82 (253)
131 TIGR01064 pyruv_kin pyruvate k 63.2 1.2E+02 0.0027 29.6 11.8 120 90-214 261-407 (473)
132 cd06270 PBP1_GalS_like Ligand 62.9 1E+02 0.0022 26.7 13.1 35 175-211 176-214 (268)
133 PRK07550 hypothetical protein; 62.4 41 0.0009 31.5 8.3 54 77-131 91-144 (386)
134 COG0078 ArgF Ornithine carbamo 62.4 83 0.0018 28.7 9.5 117 11-130 88-214 (310)
135 PRK01077 cobyrinic acid a,c-di 62.0 1.1E+02 0.0023 29.8 11.2 133 79-213 7-153 (451)
136 TIGR03201 dearomat_had 6-hydro 61.6 57 0.0012 30.1 9.0 48 77-127 168-215 (349)
137 KOG1201 Hydroxysteroid 17-beta 61.3 1.1E+02 0.0023 28.0 10.1 73 76-148 39-114 (300)
138 PRK08589 short chain dehydroge 61.2 50 0.0011 29.2 8.2 70 76-145 7-79 (272)
139 PRK05447 1-deoxy-D-xylulose 5- 61.1 1.5E+02 0.0033 28.1 13.5 133 78-224 4-161 (385)
140 PRK08628 short chain dehydroge 61.0 70 0.0015 27.7 9.1 56 76-131 8-63 (258)
141 PRK08226 short chain dehydroge 60.8 55 0.0012 28.5 8.4 70 76-145 7-79 (263)
142 PRK13394 3-hydroxybutyrate deh 60.7 39 0.00084 29.4 7.4 57 75-131 7-64 (262)
143 PRK09880 L-idonate 5-dehydroge 60.5 54 0.0012 30.2 8.6 49 77-127 171-219 (343)
144 PRK06718 precorrin-2 dehydroge 60.5 1.1E+02 0.0023 26.2 9.7 115 76-200 10-139 (202)
145 PRK07774 short chain dehydroge 60.5 67 0.0015 27.6 8.8 32 76-107 7-38 (250)
146 COG1648 CysG Siroheme synthase 60.5 1.1E+02 0.0024 26.3 10.7 116 76-200 12-142 (210)
147 cd08294 leukotriene_B4_DH_like 60.0 74 0.0016 28.7 9.4 46 79-127 148-193 (329)
148 cd08240 6_hydroxyhexanoate_dh_ 59.6 81 0.0018 28.9 9.6 46 77-124 177-222 (350)
149 COG1063 Tdh Threonine dehydrog 59.5 1.5E+02 0.0033 27.6 14.7 51 78-130 171-222 (350)
150 PRK07109 short chain dehydroge 59.5 51 0.0011 30.4 8.2 70 76-145 9-82 (334)
151 cd06324 PBP1_ABC_sugar_binding 59.5 1.3E+02 0.0029 26.9 13.8 44 166-211 192-239 (305)
152 cd08300 alcohol_DH_class_III c 59.4 76 0.0017 29.5 9.5 49 77-127 188-236 (368)
153 cd08231 MDR_TM0436_like Hypoth 58.8 52 0.0011 30.4 8.2 46 77-125 179-225 (361)
154 PRK06836 aspartate aminotransf 58.5 40 0.00087 31.8 7.5 54 77-131 97-150 (394)
155 PRK07066 3-hydroxybutyryl-CoA 58.3 1.4E+02 0.0031 27.5 10.8 33 77-109 8-40 (321)
156 TIGR03540 DapC_direct LL-diami 58.1 41 0.00089 31.5 7.5 52 78-130 93-144 (383)
157 COG1171 IlvA Threonine dehydra 58.1 1.6E+02 0.0035 27.5 11.4 69 180-279 76-146 (347)
158 cd08295 double_bond_reductase_ 57.8 75 0.0016 29.0 9.0 47 77-126 154-201 (338)
159 PF02826 2-Hacid_dh_C: D-isome 57.3 1.1E+02 0.0024 25.3 10.1 99 75-191 35-133 (178)
160 TIGR01470 cysG_Nterm siroheme 57.1 1.2E+02 0.0027 25.8 9.8 35 76-110 9-43 (205)
161 COG0623 FabI Enoyl-[acyl-carri 57.1 31 0.00066 30.3 5.7 60 75-134 6-69 (259)
162 TIGR02822 adh_fam_2 zinc-bindi 57.0 43 0.00093 30.7 7.3 47 77-126 167-213 (329)
163 cd08281 liver_ADH_like1 Zinc-d 57.0 99 0.0021 28.8 9.8 48 77-126 193-240 (371)
164 TIGR00379 cobB cobyrinic acid 56.9 1.9E+02 0.0042 28.0 12.5 48 166-213 101-149 (449)
165 PRK05565 fabG 3-ketoacyl-(acyl 56.6 56 0.0012 28.0 7.6 55 77-131 7-63 (247)
166 PRK06077 fabG 3-ketoacyl-(acyl 56.3 83 0.0018 27.0 8.7 56 76-131 7-64 (252)
167 COG0604 Qor NADPH:quinone redu 56.3 80 0.0017 29.1 8.9 51 75-128 143-193 (326)
168 cd06285 PBP1_LacI_like_7 Ligan 56.1 1.3E+02 0.0029 25.9 14.0 41 169-211 168-212 (265)
169 PRK09257 aromatic amino acid a 55.9 1.1E+02 0.0023 28.9 9.9 77 51-130 65-149 (396)
170 PRK07478 short chain dehydroge 55.7 74 0.0016 27.6 8.3 70 76-145 7-80 (254)
171 cd01075 NAD_bind_Leu_Phe_Val_D 55.6 75 0.0016 27.0 8.0 44 61-104 7-56 (200)
172 cd08301 alcohol_DH_plants Plan 55.6 1.1E+02 0.0023 28.4 9.8 50 76-127 188-237 (369)
173 cd08239 THR_DH_like L-threonin 55.5 93 0.002 28.4 9.3 48 77-126 165-212 (339)
174 COG2242 CobL Precorrin-6B meth 55.4 1.3E+02 0.0028 25.5 9.6 49 155-208 84-133 (187)
175 PRK12937 short chain dehydroge 55.4 97 0.0021 26.5 8.9 70 76-145 6-80 (245)
176 PRK07832 short chain dehydroge 55.3 56 0.0012 28.8 7.5 29 78-106 3-31 (272)
177 PRK06128 oxidoreductase; Provi 55.3 1.1E+02 0.0024 27.4 9.6 71 75-145 55-131 (300)
178 TIGR01316 gltA glutamate synth 55.2 50 0.0011 32.0 7.6 52 76-127 272-328 (449)
179 PF03853 YjeF_N: YjeF-related 54.8 84 0.0018 25.9 8.0 31 76-106 26-59 (169)
180 PRK06348 aspartate aminotransf 54.8 85 0.0018 29.4 9.0 52 77-129 90-141 (384)
181 PRK07326 short chain dehydroge 54.7 90 0.002 26.5 8.6 31 76-106 7-37 (237)
182 COG1751 Uncharacterized conser 54.7 67 0.0014 26.2 6.8 75 54-130 7-91 (186)
183 TIGR01830 3oxo_ACP_reduc 3-oxo 54.6 1.1E+02 0.0023 26.0 9.1 53 79-131 2-56 (239)
184 PLN03050 pyridoxine (pyridoxam 54.4 53 0.0011 29.1 7.0 33 77-109 62-97 (246)
185 PRK05562 precorrin-2 dehydroge 54.3 1.5E+02 0.0032 25.9 10.3 116 76-200 25-155 (223)
186 PRK06114 short chain dehydroge 54.1 1.2E+02 0.0026 26.2 9.4 71 75-145 8-83 (254)
187 PF04273 DUF442: Putative phos 54.1 46 0.00099 25.5 5.7 79 108-186 13-97 (110)
188 PRK05993 short chain dehydroge 54.1 1.2E+02 0.0026 26.8 9.5 65 77-144 6-71 (277)
189 TIGR02819 fdhA_non_GSH formald 53.6 1.1E+02 0.0025 28.9 9.7 47 77-125 187-233 (393)
190 PRK15408 autoinducer 2-binding 53.6 1.8E+02 0.004 26.8 14.7 155 65-225 71-255 (336)
191 PRK12771 putative glutamate sy 53.6 32 0.00068 34.4 6.1 52 76-127 137-206 (564)
192 PRK12744 short chain dehydroge 53.6 95 0.002 27.0 8.6 70 76-145 9-86 (257)
193 cd08274 MDR9 Medium chain dehy 53.5 66 0.0014 29.4 7.9 46 77-126 180-225 (350)
194 KOG2862 Alanine-glyoxylate ami 53.2 1.1E+02 0.0024 28.2 8.7 80 76-155 68-152 (385)
195 PLN00175 aminotransferase fami 52.9 62 0.0013 30.8 7.8 52 78-130 117-168 (413)
196 PRK08303 short chain dehydroge 52.9 1E+02 0.0022 28.0 9.0 70 76-145 9-92 (305)
197 PRK06139 short chain dehydroge 52.8 68 0.0015 29.6 7.8 70 76-145 8-81 (330)
198 TIGR02818 adh_III_F_hyde S-(hy 52.8 81 0.0017 29.4 8.5 49 77-127 187-235 (368)
199 cd08284 FDH_like_2 Glutathione 52.6 72 0.0016 29.0 8.0 47 77-125 169-215 (344)
200 PRK05839 hypothetical protein; 52.6 1.4E+02 0.003 27.9 10.1 77 54-131 59-139 (374)
201 PRK08643 acetoin reductase; Va 52.5 1.1E+02 0.0023 26.6 8.8 69 77-145 4-76 (256)
202 PRK08277 D-mannonate oxidoredu 52.4 95 0.0021 27.3 8.6 70 76-145 11-84 (278)
203 PRK05557 fabG 3-ketoacyl-(acyl 52.4 1.1E+02 0.0024 26.0 8.8 56 76-131 6-63 (248)
204 cd08233 butanediol_DH_like (2R 52.3 1.1E+02 0.0023 28.1 9.2 47 78-126 175-221 (351)
205 cd00401 AdoHcyase S-adenosyl-L 52.2 44 0.00096 32.0 6.5 49 75-126 201-249 (413)
206 PRK08862 short chain dehydroge 52.2 87 0.0019 26.9 8.0 69 76-145 6-79 (227)
207 PLN02586 probable cinnamyl alc 52.0 1E+02 0.0022 28.7 8.9 48 77-126 185-232 (360)
208 PRK05872 short chain dehydroge 51.9 87 0.0019 28.1 8.3 31 76-106 10-40 (296)
209 PRK06182 short chain dehydroge 51.9 1.5E+02 0.0032 26.0 9.7 67 76-145 4-71 (273)
210 PRK07392 threonine-phosphate d 51.8 88 0.0019 29.0 8.5 53 77-131 75-127 (360)
211 PRK09496 trkA potassium transp 51.5 2.3E+02 0.0049 27.1 12.7 50 78-130 2-52 (453)
212 PLN02740 Alcohol dehydrogenase 51.4 86 0.0019 29.4 8.4 48 77-126 200-247 (381)
213 COG0300 DltE Short-chain dehyd 51.4 84 0.0018 28.2 7.7 70 75-144 6-80 (265)
214 PRK08354 putative aminotransfe 51.2 1.2E+02 0.0026 27.5 9.1 55 78-134 56-110 (311)
215 PRK07178 pyruvate carboxylase 51.1 72 0.0016 31.1 8.0 32 77-108 3-34 (472)
216 PF02254 TrkA_N: TrkA-N domain 51.1 1E+02 0.0022 23.0 13.0 44 168-211 52-97 (116)
217 PLN03154 putative allyl alcoho 50.9 1.2E+02 0.0025 28.1 9.2 47 78-127 162-209 (348)
218 PRK14030 glutamate dehydrogena 50.8 58 0.0013 31.5 7.1 47 60-106 208-258 (445)
219 PTZ00354 alcohol dehydrogenase 50.8 1.7E+02 0.0036 26.3 10.1 48 78-128 144-191 (334)
220 cd08296 CAD_like Cinnamyl alco 50.8 87 0.0019 28.5 8.2 45 77-124 165-209 (333)
221 PRK07454 short chain dehydroge 50.7 93 0.002 26.6 8.1 70 76-145 7-80 (241)
222 PRK06108 aspartate aminotransf 50.5 1E+02 0.0022 28.6 8.8 75 54-130 60-137 (382)
223 PF00289 CPSase_L_chain: Carba 50.5 55 0.0012 25.0 5.7 50 77-129 3-52 (110)
224 PLN02918 pyridoxine (pyridoxam 50.3 61 0.0013 32.2 7.3 49 77-125 137-192 (544)
225 TIGR02379 ECA_wecE TDP-4-keto- 50.3 74 0.0016 30.0 7.8 57 75-131 45-101 (376)
226 PRK05826 pyruvate kinase; Prov 50.1 1.7E+02 0.0037 28.6 10.2 121 90-214 263-407 (465)
227 TIGR03451 mycoS_dep_FDH mycoth 49.9 1.3E+02 0.0028 27.8 9.4 47 77-125 178-224 (358)
228 cd08297 CAD3 Cinnamyl alcohol 49.8 1.1E+02 0.0024 27.8 8.8 44 79-125 170-213 (341)
229 PRK08912 hypothetical protein; 49.8 86 0.0019 29.4 8.2 52 78-130 89-140 (387)
230 PRK05876 short chain dehydroge 49.7 1.1E+02 0.0025 27.0 8.6 70 76-145 7-80 (275)
231 cd08256 Zn_ADH2 Alcohol dehydr 49.7 1.3E+02 0.0028 27.6 9.2 49 76-126 175-223 (350)
232 PRK08063 enoyl-(acyl carrier p 49.7 68 0.0015 27.6 7.0 69 76-144 5-78 (250)
233 PLN02514 cinnamyl-alcohol dehy 49.6 1.3E+02 0.0028 27.8 9.3 48 77-126 182-229 (357)
234 PRK12779 putative bifunctional 49.6 67 0.0014 34.4 8.0 98 76-187 306-403 (944)
235 COG1926 Predicted phosphoribos 49.5 20 0.00043 30.8 3.3 83 179-273 127-211 (220)
236 cd08270 MDR4 Medium chain dehy 49.5 85 0.0018 27.9 7.8 47 77-126 135-181 (305)
237 PF01262 AlaDh_PNT_C: Alanine 49.3 65 0.0014 26.4 6.4 51 76-129 20-70 (168)
238 PTZ00376 aspartate aminotransf 49.2 1.8E+02 0.0038 27.5 10.2 76 53-130 70-153 (404)
239 PRK06194 hypothetical protein; 49.1 1.3E+02 0.0027 26.6 8.9 70 76-145 7-80 (287)
240 PRK11889 flhF flagellar biosyn 49.0 1.8E+02 0.0039 28.0 9.8 76 52-130 247-328 (436)
241 PRK07201 short chain dehydroge 48.9 77 0.0017 32.1 8.2 69 77-145 373-445 (657)
242 COG0436 Aspartate/tyrosine/aro 48.8 74 0.0016 30.3 7.5 100 56-158 66-176 (393)
243 COG1064 AdhP Zn-dependent alco 48.7 1E+02 0.0022 28.8 8.0 52 76-130 167-218 (339)
244 cd08277 liver_alcohol_DH_like 48.5 96 0.0021 28.8 8.2 48 77-126 186-233 (365)
245 TIGR03537 DapC succinyldiamino 48.5 96 0.0021 28.6 8.2 52 78-130 62-116 (350)
246 TIGR01751 crot-CoA-red crotony 48.5 79 0.0017 29.8 7.7 47 78-127 193-239 (398)
247 COG1419 FlhF Flagellar GTP-bin 48.4 1.3E+02 0.0028 28.7 8.8 136 52-193 209-360 (407)
248 PRK05396 tdh L-threonine 3-deh 48.3 81 0.0018 28.8 7.6 46 78-125 166-211 (341)
249 COG1922 WecG Teichoic acid bio 48.3 72 0.0016 28.4 6.7 115 88-209 72-193 (253)
250 cd06306 PBP1_TorT-like TorT-li 48.2 1.9E+02 0.004 25.2 16.9 52 169-225 177-230 (268)
251 PRK10309 galactitol-1-phosphat 48.2 84 0.0018 28.8 7.7 48 77-126 162-209 (347)
252 PRK05867 short chain dehydroge 47.8 1.2E+02 0.0026 26.2 8.4 71 75-145 9-83 (253)
253 PRK07791 short chain dehydroge 47.7 1.3E+02 0.0028 26.8 8.7 70 76-145 7-89 (286)
254 PRK06720 hypothetical protein; 47.7 1.6E+02 0.0034 24.2 8.6 32 76-107 17-48 (169)
255 PRK07309 aromatic amino acid a 47.6 83 0.0018 29.6 7.7 53 77-130 92-144 (391)
256 PRK04148 hypothetical protein; 47.6 81 0.0018 25.1 6.4 62 63-129 5-66 (134)
257 cd06287 PBP1_LacI_like_8 Ligan 47.6 1.9E+02 0.0042 25.3 12.5 38 169-208 171-212 (269)
258 PRK08068 transaminase; Reviewe 47.4 77 0.0017 29.7 7.5 52 78-130 96-147 (389)
259 cd08246 crotonyl_coA_red croto 47.4 82 0.0018 29.5 7.7 48 77-127 195-243 (393)
260 PRK08936 glucose-1-dehydrogena 47.4 1.6E+02 0.0035 25.5 9.2 70 76-145 8-82 (261)
261 PRK11891 aspartate carbamoyltr 47.3 91 0.002 30.1 7.8 52 78-129 243-300 (429)
262 PRK07681 aspartate aminotransf 47.3 87 0.0019 29.5 7.8 53 77-130 94-146 (399)
263 PTZ00377 alanine aminotransfer 47.3 98 0.0021 30.2 8.4 54 77-130 139-192 (481)
264 PRK13656 trans-2-enoyl-CoA red 47.3 1.5E+02 0.0032 28.3 9.0 70 75-145 41-128 (398)
265 cd08210 RLP_RrRLP Ribulose bis 47.1 2.5E+02 0.0055 26.4 13.9 68 42-110 154-229 (364)
266 PF08659 KR: KR domain; Inter 47.0 77 0.0017 26.2 6.6 65 79-143 4-76 (181)
267 PRK12831 putative oxidoreducta 46.9 81 0.0018 30.7 7.6 52 76-127 281-337 (464)
268 PRK08278 short chain dehydroge 46.8 1.7E+02 0.0037 25.8 9.3 69 76-144 7-86 (273)
269 PRK12938 acetyacetyl-CoA reduc 46.7 1.4E+02 0.0031 25.5 8.6 70 76-145 4-78 (246)
270 PRK06425 histidinol-phosphate 46.7 68 0.0015 29.4 6.8 52 77-131 58-109 (332)
271 PRK06719 precorrin-2 dehydroge 46.7 1.6E+02 0.0034 24.0 9.0 117 75-200 12-139 (157)
272 PRK06207 aspartate aminotransf 46.7 1.2E+02 0.0025 28.8 8.6 53 77-130 103-155 (405)
273 cd08291 ETR_like_1 2-enoyl thi 46.3 1.3E+02 0.0028 27.2 8.6 42 82-126 151-192 (324)
274 PRK07806 short chain dehydroge 46.1 1.7E+02 0.0036 25.1 9.0 69 76-144 7-80 (248)
275 PLN02178 cinnamyl-alcohol dehy 46.1 1.7E+02 0.0036 27.5 9.5 48 77-126 180-227 (375)
276 PLN02527 aspartate carbamoyltr 46.0 1.2E+02 0.0025 27.9 8.1 116 11-129 85-210 (306)
277 PRK12827 short chain dehydroge 46.0 1.9E+02 0.0041 24.6 9.5 56 76-131 7-67 (249)
278 PF13460 NAD_binding_10: NADH( 45.8 45 0.00097 27.3 5.0 45 79-128 2-46 (183)
279 PRK07478 short chain dehydroge 45.8 1E+02 0.0022 26.7 7.6 75 111-186 19-93 (254)
280 PRK08085 gluconate 5-dehydroge 45.7 1.4E+02 0.003 25.8 8.5 71 75-145 9-83 (254)
281 PRK07666 fabG 3-ketoacyl-(acyl 45.7 1.6E+02 0.0035 25.0 8.8 68 76-143 8-79 (239)
282 PRK12745 3-ketoacyl-(acyl-carr 45.7 1.7E+02 0.0036 25.2 8.9 69 77-145 4-77 (256)
283 cd08258 Zn_ADH4 Alcohol dehydr 45.6 97 0.0021 27.9 7.6 46 78-124 167-212 (306)
284 PRK02610 histidinol-phosphate 45.6 1.2E+02 0.0027 28.2 8.5 54 77-130 92-145 (374)
285 cd06326 PBP1_STKc_like Type I 45.5 2.3E+02 0.005 25.5 14.9 146 65-217 58-231 (336)
286 COG0492 TrxB Thioredoxin reduc 45.2 41 0.00088 30.8 5.0 32 78-109 5-36 (305)
287 TIGR01831 fabG_rel 3-oxoacyl-( 45.1 1.6E+02 0.0034 25.0 8.6 67 79-145 2-73 (239)
288 TIGR01140 L_thr_O3P_dcar L-thr 45.1 1.2E+02 0.0026 27.7 8.2 54 77-134 65-118 (330)
289 PRK12824 acetoacetyl-CoA reduc 45.0 1.8E+02 0.0039 24.7 9.0 32 77-108 4-35 (245)
290 PRK05166 histidinol-phosphate 44.8 1.8E+02 0.0038 27.1 9.4 54 77-131 89-142 (371)
291 PRK05786 fabG 3-ketoacyl-(acyl 44.7 74 0.0016 27.1 6.4 33 76-108 6-38 (238)
292 TIGR02415 23BDH acetoin reduct 44.6 1.6E+02 0.0035 25.3 8.7 68 78-145 3-74 (254)
293 PRK08654 pyruvate carboxylase 44.4 1.4E+02 0.0029 29.5 8.8 31 77-107 3-33 (499)
294 cd08242 MDR_like Medium chain 44.4 1.2E+02 0.0026 27.2 8.1 45 78-125 158-202 (319)
295 PRK06172 short chain dehydroge 44.3 1.4E+02 0.0031 25.6 8.3 69 76-144 8-80 (253)
296 PRK06181 short chain dehydroge 44.2 1.4E+02 0.0031 25.8 8.3 69 77-145 3-75 (263)
297 cd08298 CAD2 Cinnamyl alcohol 44.1 1E+02 0.0022 27.8 7.6 45 77-124 169-213 (329)
298 PRK08463 acetyl-CoA carboxylas 44.0 1.2E+02 0.0026 29.6 8.4 30 77-106 3-32 (478)
299 PRK12414 putative aminotransfe 43.9 1E+02 0.0022 29.0 7.6 52 78-131 92-144 (384)
300 TIGR01182 eda Entner-Doudoroff 43.9 1.9E+02 0.0041 24.8 8.5 127 82-225 41-170 (204)
301 PRK12825 fabG 3-ketoacyl-(acyl 43.9 96 0.0021 26.4 7.1 55 77-131 8-64 (249)
302 PRK07366 succinyldiaminopimela 43.8 96 0.0021 29.0 7.5 79 78-158 94-178 (388)
303 PRK11706 TDP-4-oxo-6-deoxy-D-g 43.7 1E+02 0.0022 28.9 7.6 54 77-130 47-100 (375)
304 PRK08192 aspartate carbamoyltr 43.7 1.1E+02 0.0024 28.5 7.6 117 11-130 89-219 (338)
305 PRK08217 fabG 3-ketoacyl-(acyl 43.6 1.5E+02 0.0033 25.3 8.4 69 76-144 6-78 (253)
306 PRK07683 aminotransferase A; V 43.6 89 0.0019 29.3 7.2 53 78-131 91-143 (387)
307 cd05188 MDR Medium chain reduc 43.6 93 0.002 26.8 7.0 42 79-124 139-180 (271)
308 PRK07035 short chain dehydroge 43.5 1.7E+02 0.0036 25.2 8.6 70 76-145 9-82 (252)
309 PRK07074 short chain dehydroge 43.5 1.8E+02 0.004 25.0 8.9 30 77-106 4-33 (257)
310 PRK06290 aspartate aminotransf 43.4 1.1E+02 0.0023 29.3 7.7 52 78-130 108-159 (410)
311 PRK06949 short chain dehydroge 43.3 1.3E+02 0.0028 25.9 7.9 69 76-144 10-82 (258)
312 cd06320 PBP1_allose_binding Pe 43.2 2.2E+02 0.0048 24.7 13.2 41 169-211 175-217 (275)
313 PRK08462 biotin carboxylase; V 43.2 1.4E+02 0.0031 28.7 8.7 30 77-106 5-34 (445)
314 PRK05653 fabG 3-ketoacyl-(acyl 43.2 1.1E+02 0.0023 26.1 7.2 55 77-131 7-62 (246)
315 PRK06702 O-acetylhomoserine am 42.9 1E+02 0.0023 29.7 7.6 94 60-158 63-160 (432)
316 cd06274 PBP1_FruR Ligand bindi 42.9 2.2E+02 0.0047 24.5 14.4 42 168-211 169-215 (264)
317 cd06280 PBP1_LacI_like_4 Ligan 42.8 2.2E+02 0.0048 24.5 13.0 34 176-211 172-209 (263)
318 PRK05717 oxidoreductase; Valid 42.8 1.9E+02 0.0041 24.9 8.9 68 76-145 11-81 (255)
319 PRK00779 ornithine carbamoyltr 42.7 98 0.0021 28.3 7.1 46 83-128 160-208 (304)
320 TIGR01182 eda Entner-Doudoroff 42.7 2.2E+02 0.0047 24.4 13.2 132 77-223 11-144 (204)
321 PRK08862 short chain dehydroge 42.7 1.3E+02 0.0028 25.8 7.6 84 102-186 7-93 (227)
322 PF00155 Aminotran_1_2: Aminot 42.6 40 0.00086 31.1 4.6 52 78-129 70-121 (363)
323 PLN02827 Alcohol dehydrogenase 42.4 2.6E+02 0.0056 26.1 10.2 48 77-126 195-242 (378)
324 PRK05764 aspartate aminotransf 42.4 99 0.0021 28.9 7.3 53 78-131 93-145 (393)
325 PRK13376 pyrB bifunctional asp 42.3 1.1E+02 0.0024 30.4 7.6 54 77-130 175-234 (525)
326 PF11775 CobT_C: Cobalamin bio 42.3 2.2E+02 0.0047 24.8 8.5 105 193-318 40-147 (219)
327 cd08292 ETR_like_2 2-enoyl thi 42.3 1.6E+02 0.0036 26.2 8.6 43 79-124 144-186 (324)
328 PRK08261 fabG 3-ketoacyl-(acyl 42.1 1.6E+02 0.0036 28.2 9.0 70 76-145 211-281 (450)
329 PRK07777 aminotransferase; Val 42.1 1.1E+02 0.0024 28.6 7.6 52 78-130 87-138 (387)
330 KOG3857 Alcohol dehydrogenase, 42.0 77 0.0017 29.6 6.0 28 160-189 112-139 (465)
331 PRK12809 putative oxidoreducta 42.0 48 0.001 33.7 5.4 52 76-127 310-379 (639)
332 PRK08265 short chain dehydroge 41.9 2.1E+02 0.0046 24.9 9.0 68 76-145 7-77 (261)
333 TIGR03325 BphB_TodD cis-2,3-di 41.9 1.9E+02 0.0042 25.1 8.8 68 75-145 5-76 (262)
334 KOG0023 Alcohol dehydrogenase, 41.8 1.3E+02 0.0028 27.9 7.4 51 78-130 184-234 (360)
335 PRK10537 voltage-gated potassi 41.8 3.2E+02 0.0069 26.1 16.3 96 76-211 240-337 (393)
336 PRK02102 ornithine carbamoyltr 41.6 1.5E+02 0.0032 27.6 8.1 53 77-129 156-216 (331)
337 PRK06483 dihydromonapterin red 41.5 2.2E+02 0.0048 24.2 9.4 67 77-145 4-71 (236)
338 PRK07792 fabG 3-ketoacyl-(acyl 41.4 1.6E+02 0.0035 26.5 8.4 56 76-131 13-70 (306)
339 PRK10490 sensor protein KdpD; 41.4 4.1E+02 0.009 28.3 12.4 104 79-185 254-375 (895)
340 PRK06358 threonine-phosphate d 41.2 1E+02 0.0022 28.5 7.2 51 77-130 72-122 (354)
341 PRK12935 acetoacetyl-CoA reduc 41.2 1.9E+02 0.0041 24.7 8.5 69 76-144 7-80 (247)
342 PRK06198 short chain dehydroge 41.0 2.4E+02 0.0051 24.3 9.4 70 76-145 7-81 (260)
343 PF00670 AdoHcyase_NAD: S-aden 41.0 1.4E+02 0.003 24.7 6.9 89 76-187 23-112 (162)
344 PLN02342 ornithine carbamoyltr 40.7 1E+02 0.0023 28.8 7.0 45 84-128 203-250 (348)
345 PRK05370 argininosuccinate syn 40.7 3.5E+02 0.0076 26.3 12.3 131 75-209 11-156 (447)
346 TIGR01064 pyruv_kin pyruvate k 40.7 2.4E+02 0.0053 27.6 9.8 85 58-147 357-445 (473)
347 PRK05479 ketol-acid reductoiso 40.6 3E+02 0.0066 25.5 9.9 47 76-124 17-63 (330)
348 COG1587 HemD Uroporphyrinogen- 40.6 2.1E+02 0.0046 25.0 8.7 115 88-210 86-211 (248)
349 PRK12828 short chain dehydroge 40.4 1.6E+02 0.0035 24.8 8.0 70 76-145 8-79 (239)
350 PRK05867 short chain dehydroge 40.4 1.3E+02 0.0027 26.1 7.3 86 101-187 10-97 (253)
351 PTZ00079 NADP-specific glutama 40.3 1.2E+02 0.0027 29.4 7.5 48 60-107 217-268 (454)
352 cd08254 hydroxyacyl_CoA_DH 6-h 40.1 1.5E+02 0.0033 26.6 8.1 46 78-126 168-213 (338)
353 cd08287 FDH_like_ADH3 formalde 40.0 2.4E+02 0.0051 25.6 9.4 46 77-124 170-215 (345)
354 PRK14478 nitrogenase molybdenu 40.0 3.7E+02 0.008 26.3 11.3 38 75-112 323-360 (475)
355 cd08285 NADP_ADH NADP(H)-depen 39.9 1.5E+02 0.0034 27.0 8.2 46 77-124 168-213 (351)
356 cd08278 benzyl_alcohol_DH Benz 39.8 1.7E+02 0.0037 27.1 8.5 48 77-126 188-235 (365)
357 TIGR02853 spore_dpaA dipicolin 39.7 2.4E+02 0.0052 25.5 9.1 46 76-124 151-196 (287)
358 cd05279 Zn_ADH1 Liver alcohol 39.6 1.4E+02 0.003 27.7 7.8 46 77-124 185-230 (365)
359 KOG1176 Acyl-CoA synthetase [L 39.6 3.8E+02 0.0082 26.8 11.0 55 82-136 79-133 (537)
360 PF13561 adh_short_C2: Enoyl-( 39.5 44 0.00096 28.8 4.2 70 116-187 14-84 (241)
361 PRK05693 short chain dehydroge 39.5 2.6E+02 0.0057 24.4 9.7 66 77-145 3-69 (274)
362 PRK09082 methionine aminotrans 39.4 1.7E+02 0.0037 27.4 8.5 53 78-131 93-145 (386)
363 PRK09291 short chain dehydroge 39.3 70 0.0015 27.7 5.5 55 77-131 4-59 (257)
364 PRK07677 short chain dehydroge 39.3 1.9E+02 0.0041 24.9 8.2 69 77-145 3-75 (252)
365 PRK09730 putative NAD(P)-bindi 39.2 1.2E+02 0.0025 25.9 6.9 54 78-131 4-59 (247)
366 PRK07231 fabG 3-ketoacyl-(acyl 39.2 2.4E+02 0.0051 24.0 8.9 66 76-142 6-75 (251)
367 cd08205 RuBisCO_IV_RLP Ribulos 39.0 3.4E+02 0.0073 25.6 11.6 69 42-110 159-234 (367)
368 PRK06113 7-alpha-hydroxysteroi 39.0 2E+02 0.0044 24.8 8.4 71 75-145 11-85 (255)
369 PRK06124 gluconate 5-dehydroge 39.0 2E+02 0.0043 24.8 8.3 71 75-145 11-85 (256)
370 PRK06079 enoyl-(acyl carrier p 38.9 1.5E+02 0.0033 25.7 7.6 32 76-107 8-41 (252)
371 TIGR01283 nifE nitrogenase mol 38.9 3.7E+02 0.0081 26.0 11.2 65 75-139 325-391 (456)
372 cd05283 CAD1 Cinnamyl alcohol 38.8 1.3E+02 0.0029 27.3 7.5 46 78-126 172-217 (337)
373 TIGR00658 orni_carb_tr ornithi 38.8 1.3E+02 0.0028 27.5 7.2 46 84-129 157-208 (304)
374 PRK08133 O-succinylhomoserine 38.8 2.1E+02 0.0045 27.1 8.9 78 77-158 77-159 (390)
375 PRK14027 quinate/shikimate deh 38.7 1.5E+02 0.0032 26.9 7.5 71 39-109 88-160 (283)
376 PRK12826 3-ketoacyl-(acyl-carr 38.6 1.1E+02 0.0023 26.2 6.5 56 76-131 7-63 (251)
377 cd08288 MDR_yhdh Yhdh putative 38.5 1.6E+02 0.0035 26.4 7.9 47 78-127 150-196 (324)
378 PRK12810 gltD glutamate syntha 38.5 1.5E+02 0.0033 28.8 8.1 50 77-126 144-211 (471)
379 COG0159 TrpA Tryptophan syntha 38.5 2.9E+02 0.0064 24.7 12.6 68 61-129 109-178 (265)
380 PRK08643 acetoin reductase; Va 38.4 1.9E+02 0.0041 24.9 8.1 74 111-187 15-90 (256)
381 PRK11749 dihydropyrimidine deh 38.4 1.3E+02 0.0028 29.0 7.7 52 76-127 273-330 (457)
382 PRK08594 enoyl-(acyl carrier p 38.4 2.5E+02 0.0054 24.4 8.9 70 76-145 8-84 (257)
383 PRK04284 ornithine carbamoyltr 38.4 1.5E+02 0.0032 27.6 7.6 45 85-129 166-216 (332)
384 TIGR03539 DapC_actino succinyl 38.4 1.3E+02 0.0028 27.8 7.4 53 77-129 81-133 (357)
385 PRK08248 O-acetylhomoserine am 38.3 1.5E+02 0.0032 28.6 7.8 92 60-158 66-162 (431)
386 cd05284 arabinose_DH_like D-ar 38.2 1.7E+02 0.0036 26.5 8.1 44 78-124 170-214 (340)
387 PRK06701 short chain dehydroge 38.2 2.4E+02 0.0052 25.2 8.9 69 76-144 47-120 (290)
388 PRK05650 short chain dehydroge 38.2 2E+02 0.0043 25.1 8.3 68 78-145 3-74 (270)
389 PRK08361 aspartate aminotransf 38.2 1.2E+02 0.0025 28.6 7.1 53 77-130 94-146 (391)
390 PRK10538 malonic semialdehyde 38.1 2.3E+02 0.0051 24.3 8.6 64 78-144 3-70 (248)
391 PF02310 B12-binding: B12 bind 37.8 1E+02 0.0022 23.2 5.6 90 89-186 18-114 (121)
392 PTZ00433 tyrosine aminotransfe 37.8 1.4E+02 0.003 28.4 7.6 53 77-130 105-157 (412)
393 PRK08306 dipicolinate synthase 37.8 2.1E+02 0.0046 25.9 8.5 48 76-126 152-199 (296)
394 PF13380 CoA_binding_2: CoA bi 37.8 1.6E+02 0.0035 22.4 6.7 52 75-126 55-106 (116)
395 COG0399 WecE Predicted pyridox 37.7 1E+02 0.0023 29.1 6.5 79 48-131 26-104 (374)
396 cd06308 PBP1_sensor_kinase_lik 37.7 2.7E+02 0.0058 24.1 15.7 44 168-213 174-219 (270)
397 cd08276 MDR7 Medium chain dehy 37.5 1.7E+02 0.0037 26.2 8.0 45 78-125 163-207 (336)
398 PRK01688 histidinol-phosphate 37.5 2.3E+02 0.0051 26.1 9.0 53 77-130 75-128 (351)
399 KOG0024 Sorbitol dehydrogenase 37.4 3E+02 0.0066 25.6 9.1 53 76-130 170-222 (354)
400 PRK13243 glyoxylate reductase; 37.3 1.8E+02 0.004 26.9 8.1 96 77-191 151-246 (333)
401 COG1167 ARO8 Transcriptional r 37.3 2.1E+02 0.0046 27.7 8.9 79 78-158 157-240 (459)
402 PRK09134 short chain dehydroge 37.3 1.6E+02 0.0034 25.5 7.4 56 76-131 10-67 (258)
403 PF13478 XdhC_C: XdhC Rossmann 37.2 37 0.00081 27.0 3.0 31 79-109 1-31 (136)
404 PRK07114 keto-hydroxyglutarate 37.2 2.8E+02 0.0061 24.1 13.2 59 165-225 120-182 (222)
405 PRK07062 short chain dehydroge 37.1 2.4E+02 0.0053 24.4 8.7 70 76-145 9-84 (265)
406 PRK08416 7-alpha-hydroxysteroi 36.8 2.5E+02 0.0054 24.3 8.7 70 76-145 9-84 (260)
407 cd01078 NAD_bind_H4MPT_DH NADP 36.8 2.5E+02 0.0053 23.4 9.7 27 79-105 32-58 (194)
408 PRK07666 fabG 3-ketoacyl-(acyl 36.8 1.2E+02 0.0026 25.9 6.5 73 112-187 21-95 (239)
409 PRK06720 hypothetical protein; 36.8 2E+02 0.0044 23.5 7.6 75 111-186 29-103 (169)
410 TIGR00514 accC acetyl-CoA carb 36.8 1.5E+02 0.0033 28.5 7.8 31 77-107 3-33 (449)
411 PRK06138 short chain dehydroge 36.8 2.5E+02 0.0053 24.0 8.6 69 76-145 6-78 (252)
412 PRK12770 putative glutamate sy 36.8 1.7E+02 0.0037 27.0 7.9 52 76-127 172-229 (352)
413 PRK05942 aspartate aminotransf 36.7 1.5E+02 0.0032 27.9 7.6 52 78-130 99-150 (394)
414 PRK12833 acetyl-CoA carboxylas 36.7 1.6E+02 0.0034 28.7 7.9 31 77-107 6-36 (467)
415 cd08260 Zn_ADH6 Alcohol dehydr 36.6 3.1E+02 0.0068 24.8 9.6 37 84-123 174-210 (345)
416 TIGR00692 tdh L-threonine 3-de 36.5 1.6E+02 0.0036 26.7 7.7 41 82-124 168-208 (340)
417 PRK07985 oxidoreductase; Provi 36.5 2.2E+02 0.0048 25.4 8.5 70 76-145 50-125 (294)
418 TIGR03206 benzo_BadH 2-hydroxy 36.5 2.2E+02 0.0048 24.3 8.2 69 76-144 4-76 (250)
419 PRK09242 tropinone reductase; 36.4 2.5E+02 0.0055 24.2 8.6 70 76-145 10-85 (257)
420 cd08299 alcohol_DH_class_I_II_ 36.3 2.1E+02 0.0045 26.7 8.5 46 77-124 192-237 (373)
421 PTZ00075 Adenosylhomocysteinas 36.2 4E+02 0.0086 26.2 10.3 91 76-188 254-344 (476)
422 PRK07069 short chain dehydroge 36.2 1.5E+02 0.0033 25.3 7.2 31 78-108 2-32 (251)
423 cd08232 idonate-5-DH L-idonate 36.2 2.2E+02 0.0048 25.7 8.6 40 82-123 172-211 (339)
424 PRK06463 fabG 3-ketoacyl-(acyl 36.1 2.8E+02 0.0061 23.8 9.8 68 76-145 8-76 (255)
425 cd06296 PBP1_CatR_like Ligand- 36.1 2.8E+02 0.0061 23.8 14.3 40 170-211 172-215 (270)
426 PRK08085 gluconate 5-dehydroge 36.1 1.9E+02 0.0041 24.9 7.8 86 101-187 10-97 (254)
427 cd06278 PBP1_LacI_like_2 Ligan 36.1 2.8E+02 0.006 23.7 14.6 41 169-211 167-212 (266)
428 PRK08159 enoyl-(acyl carrier p 36.0 1.1E+02 0.0024 27.1 6.3 69 77-145 12-85 (272)
429 PRK07904 short chain dehydroge 35.9 2.7E+02 0.0059 24.1 8.8 67 77-143 10-83 (253)
430 PRK08264 short chain dehydroge 35.9 1.1E+02 0.0024 26.0 6.2 32 76-107 7-39 (238)
431 PF02737 3HCDH_N: 3-hydroxyacy 35.9 59 0.0013 27.1 4.2 126 79-213 2-139 (180)
432 PRK08213 gluconate 5-dehydroge 35.9 1.2E+02 0.0027 26.2 6.6 71 75-145 12-86 (259)
433 PRK12769 putative oxidoreducta 35.8 67 0.0015 32.8 5.4 51 76-126 327-395 (654)
434 TIGR00877 purD phosphoribosyla 35.8 3.9E+02 0.0084 25.3 10.9 28 79-106 3-30 (423)
435 COG0026 PurK Phosphoribosylami 35.7 62 0.0013 30.4 4.6 32 78-109 3-34 (375)
436 PRK05664 threonine-phosphate d 35.7 1.9E+02 0.0041 26.4 8.0 52 76-130 64-115 (330)
437 PRK06947 glucose-1-dehydrogena 35.6 1.1E+02 0.0024 26.3 6.1 68 77-144 4-76 (248)
438 CHL00194 ycf39 Ycf39; Provisio 35.6 1.6E+02 0.0036 26.6 7.5 49 78-129 3-51 (317)
439 PRK08056 threonine-phosphate d 35.6 1.5E+02 0.0033 27.3 7.4 51 77-130 73-123 (356)
440 cd05280 MDR_yhdh_yhfp Yhdh and 35.6 1.6E+02 0.0036 26.2 7.5 46 78-126 150-195 (325)
441 cd08243 quinone_oxidoreductase 35.5 1.8E+02 0.004 25.7 7.8 45 79-126 147-191 (320)
442 cd06273 PBP1_GntR_like_1 This 35.5 2.9E+02 0.0062 23.7 15.1 40 169-210 171-214 (268)
443 COG2894 MinD Septum formation 35.5 3.1E+02 0.0068 24.2 8.6 115 90-214 22-148 (272)
444 PRK08175 aminotransferase; Val 35.4 1.7E+02 0.0038 27.4 7.8 51 78-130 93-144 (395)
445 PRK14805 ornithine carbamoyltr 35.4 1.2E+02 0.0026 27.7 6.4 46 85-130 157-208 (302)
446 PRK06500 short chain dehydroge 35.3 2.8E+02 0.0061 23.6 8.8 67 76-145 7-77 (249)
447 PRK08017 oxidoreductase; Provi 35.3 2.4E+02 0.0052 24.2 8.3 51 77-130 4-54 (256)
448 PRK12778 putative bifunctional 35.0 1.5E+02 0.0033 30.8 7.8 52 76-127 570-627 (752)
449 TIGR02817 adh_fam_1 zinc-bindi 34.9 1.5E+02 0.0032 26.8 7.2 44 79-125 153-197 (336)
450 TIGR01318 gltD_gamma_fam gluta 34.9 1.6E+02 0.0036 28.5 7.7 51 76-126 141-209 (467)
451 PLN02623 pyruvate kinase 34.9 4.2E+02 0.0091 26.7 10.4 120 89-214 366-510 (581)
452 PLN02231 alanine transaminase 34.8 3.5E+02 0.0076 26.9 10.1 54 77-130 192-245 (534)
453 PRK07035 short chain dehydroge 34.6 2E+02 0.0043 24.7 7.6 85 101-186 9-95 (252)
454 PRK07063 short chain dehydroge 34.6 2.8E+02 0.006 23.9 8.6 70 76-145 8-83 (260)
455 PRK06139 short chain dehydroge 34.5 1.6E+02 0.0034 27.1 7.2 86 101-187 8-95 (330)
456 PLN02702 L-idonate 5-dehydroge 34.4 2.2E+02 0.0049 26.2 8.4 48 78-127 184-231 (364)
457 PRK07865 N-succinyldiaminopime 34.4 1.2E+02 0.0026 28.0 6.5 54 77-130 87-140 (364)
458 PRK02255 putrescine carbamoylt 34.3 1.6E+02 0.0035 27.4 7.2 45 85-129 164-214 (338)
459 PRK06200 2,3-dihydroxy-2,3-dih 34.3 2.7E+02 0.0058 24.1 8.5 67 76-145 7-77 (263)
460 PRK09276 LL-diaminopimelate am 34.3 1.4E+02 0.003 27.9 7.0 52 78-130 95-146 (385)
461 PLN02253 xanthoxin dehydrogena 34.0 2.2E+02 0.0047 25.0 7.9 32 76-107 19-50 (280)
462 PRK06111 acetyl-CoA carboxylas 33.9 2.1E+02 0.0044 27.5 8.2 31 77-107 3-33 (450)
463 TIGR00936 ahcY adenosylhomocys 33.9 1.1E+02 0.0025 29.2 6.2 49 75-126 194-242 (406)
464 cd06311 PBP1_ABC_sugar_binding 33.9 2.6E+02 0.0057 24.2 8.4 53 169-225 178-232 (274)
465 cd08267 MDR1 Medium chain dehy 33.8 1.5E+02 0.0033 26.2 7.0 41 79-123 148-188 (319)
466 PF12831 FAD_oxidored: FAD dep 33.8 63 0.0014 31.0 4.6 31 79-109 2-32 (428)
467 cd01825 SGNH_hydrolase_peri1 S 33.7 2.1E+02 0.0045 23.2 7.3 37 176-212 56-105 (189)
468 PRK07503 methionine gamma-lyas 33.7 2E+02 0.0044 27.3 8.0 78 77-158 81-163 (403)
469 cd08282 PFDH_like Pseudomonas 33.7 2.2E+02 0.0047 26.5 8.2 46 77-124 178-223 (375)
470 PRK01438 murD UDP-N-acetylmura 33.7 1.7E+02 0.0036 28.5 7.6 50 77-126 17-68 (480)
471 TIGR01264 tyr_amTase_E tyrosin 33.7 1.9E+02 0.0042 27.1 7.9 53 77-130 96-148 (401)
472 PRK07775 short chain dehydroge 33.6 3E+02 0.0065 24.1 8.7 69 76-144 11-83 (274)
473 PRK12859 3-ketoacyl-(acyl-carr 33.6 2.3E+02 0.0049 24.6 7.9 70 76-145 7-93 (256)
474 cd08289 MDR_yhfp_like Yhfp put 33.5 1.4E+02 0.0029 26.9 6.6 46 78-126 150-195 (326)
475 cd01011 nicotinamidase Nicotin 33.5 1.7E+02 0.0037 24.6 6.7 53 74-126 136-196 (196)
476 PRK06172 short chain dehydroge 33.3 2.4E+02 0.0051 24.2 7.9 83 101-186 8-94 (253)
477 PF00890 FAD_binding_2: FAD bi 33.3 62 0.0013 30.6 4.4 31 79-109 2-32 (417)
478 PRK08247 cystathionine gamma-s 33.2 2E+02 0.0044 26.8 7.8 90 60-157 54-148 (366)
479 cd05281 TDH Threonine dehydrog 33.2 1.9E+02 0.0042 26.2 7.6 45 78-124 166-210 (341)
480 cd05313 NAD_bind_2_Glu_DH NAD( 33.2 2.3E+02 0.005 25.2 7.6 47 61-107 19-69 (254)
481 PRK12749 quinate/shikimate deh 33.2 2.5E+02 0.0053 25.5 8.0 70 39-109 86-157 (288)
482 PF13433 Peripla_BP_5: Peripla 33.1 72 0.0016 30.0 4.6 123 72-201 65-213 (363)
483 PRK12743 oxidoreductase; Provi 33.1 1.5E+02 0.0032 25.7 6.6 75 112-187 16-91 (256)
484 cd08259 Zn_ADH5 Alcohol dehydr 33.0 2.2E+02 0.0047 25.5 7.9 44 78-124 166-209 (332)
485 PRK07568 aspartate aminotransf 33.0 1.5E+02 0.0033 27.7 7.0 75 55-130 66-141 (397)
486 cd05311 NAD_bind_2_malic_enz N 32.9 1.2E+02 0.0026 26.3 5.8 54 55-108 4-59 (226)
487 PRK12562 ornithine carbamoyltr 32.9 2E+02 0.0044 26.7 7.5 52 78-129 158-217 (334)
488 COG2518 Pcm Protein-L-isoaspar 32.8 3.2E+02 0.007 23.5 8.8 110 62-188 60-173 (209)
489 PRK08642 fabG 3-ketoacyl-(acyl 32.8 3.1E+02 0.0068 23.3 9.1 68 76-144 6-76 (253)
490 PRK14807 histidinol-phosphate 32.6 4E+02 0.0086 24.5 9.9 53 77-130 77-129 (351)
491 PRK03515 ornithine carbamoyltr 32.6 2.1E+02 0.0045 26.7 7.5 52 78-129 158-217 (336)
492 cd08264 Zn_ADH_like2 Alcohol d 32.6 1.6E+02 0.0035 26.4 6.9 27 79-105 167-193 (325)
493 TIGR02685 pter_reduc_Leis pter 32.5 2.4E+02 0.0053 24.5 7.9 30 78-107 4-33 (267)
494 PRK12748 3-ketoacyl-(acyl-carr 32.5 3.3E+02 0.0071 23.5 9.0 69 77-145 7-92 (256)
495 PRK06841 short chain dehydroge 32.4 2.9E+02 0.0063 23.6 8.4 32 76-107 16-47 (255)
496 PRK06202 hypothetical protein; 32.3 65 0.0014 27.8 4.1 38 177-214 62-99 (232)
497 PRK07890 short chain dehydroge 32.3 1.5E+02 0.0032 25.6 6.4 56 76-131 6-62 (258)
498 cd08244 MDR_enoyl_red Possible 32.2 3.3E+02 0.0071 24.2 8.9 42 79-123 147-188 (324)
499 PLN02397 aspartate transaminas 32.2 1.7E+02 0.0037 28.0 7.2 27 103-129 144-170 (423)
500 PRK08363 alanine aminotransfer 32.2 1.7E+02 0.0037 27.5 7.2 51 77-128 94-144 (398)
No 1
>PLN02970 serine racemase
Probab=100.00 E-value=9.6e-71 Score=507.13 Aligned_cols=327 Identities=76% Similarity=1.184 Sum_probs=303.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE
Q 020236 2 EANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT 81 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~ 81 (329)
|++.....++++++..++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++++.++||+
T Consensus 1 ~~~~~~~~~~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~ 80 (328)
T PLN02970 1 EAASEKYAADLSSIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVT 80 (328)
T ss_pred CCCCcCCCcCHHHHHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEE
Confidence 67778888999999999999999999999999999998889999999999999999999999999998876667788999
Q ss_pred ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCccccc
Q 020236 82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIIS 161 (329)
Q Consensus 82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~ 161 (329)
+|+||||+|+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++++++.+.+.+++++++++++|++||+|+..++
T Consensus 81 aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~~g~~~~~~~~n~~~~~ 160 (328)
T PLN02970 81 HSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIHPYNDGRVIS 160 (328)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999989999999888999999999999999
Q ss_pred ccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccccc
Q 020236 162 GQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA 241 (329)
Q Consensus 162 g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~ 241 (329)
|++|+++||++|+++||+||+|+|+||+++|++++||+.+|.+|||+|||.++++++.++..|+....+...++++|+..
T Consensus 161 g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~ 240 (328)
T PLN02970 161 GQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRA 240 (328)
T ss_pred ehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999987777777899999987
Q ss_pred CCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCC-CCeEEEEeCCCCCCh
Q 020236 242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD-SKKIGIVLSGGNVDL 320 (329)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~-~~~vv~v~tgg~~~~ 320 (329)
.++...|+.+++.+|+++.|+|+|++++++++++++|+++||+||++++++++.. .+.+.+.+ +++||+++||||+|+
T Consensus 241 ~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~-~~~~~~~~~~~~vv~v~~Ggn~~~ 319 (328)
T PLN02970 241 SLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDS-FRSNPAWKGCKNVGIVLSGGNVDL 319 (328)
T ss_pred CcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCc-ccccccccCCCeEEEEECCCCCCH
Confidence 6666778888899999999999999999999999999999999999999988652 23333223 589999999999999
Q ss_pred HHHHHhhhC
Q 020236 321 GVLWDSFRK 329 (329)
Q Consensus 321 ~~~~~~~~~ 329 (329)
++|++++.|
T Consensus 320 ~~~~~~~~~ 328 (328)
T PLN02970 320 GVLWESFSK 328 (328)
T ss_pred HHHHHHhhC
Confidence 999999986
No 2
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-70 Score=492.73 Aligned_cols=320 Identities=39% Similarity=0.647 Sum_probs=301.3
Q ss_pred CCCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchh-ccCCeEEEECC
Q 020236 6 EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDED-QAIKGVVTHSS 84 (329)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~-~~~~~vv~~ss 84 (329)
+....+++++..++.++.+.+.+|||++++.|++.+|.+||+|+|++||+||||.||+++.++.+..+ .+.++||++|+
T Consensus 3 ~~~~~~~~~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSa 82 (347)
T COG1171 3 PLLPVSLADILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASA 82 (347)
T ss_pred ccccccHHHHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEEecC
Confidence 44557899999999999999999999999999999999999999999999999999999999998644 57788999999
Q ss_pred chHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccC
Q 020236 85 GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQG 164 (329)
Q Consensus 85 GN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~ 164 (329)
||||.++|++|+++|++++||||..+|..|++..+.+||+|+.++.+++++.+.++++++++|+.|++|||+|+.++||+
T Consensus 83 GNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQG 162 (347)
T COG1171 83 GNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQG 162 (347)
T ss_pred CcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHhhCCC-CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcC-CeeecCCCCccccccccC
Q 020236 165 TISLEFLEQVPL-LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAG-RIITLLETNTVADGLRAF 242 (329)
Q Consensus 165 t~~~Ei~~ql~~-~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g-~~~~~~~~~t~~~gl~~~ 242 (329)
|++.||++|+++ ||+||||+|+||+++|++.++|...|.++||||||++++++++|++.| .+.......++++|+.+.
T Consensus 163 Ti~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~ 242 (347)
T COG1171 163 TIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVK 242 (347)
T ss_pred HHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccC
Confidence 999999999997 599999999999999999999999999999999999999999999999 455555699999999986
Q ss_pred -CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChH
Q 020236 243 -LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLG 321 (329)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~ 321 (329)
+++..|+++++++|+++.|+|+|+.++|+.+++++++++||++|+++||+++. ..+. .+++++++|+||||.|+.
T Consensus 243 ~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~--~~~~--~~g~~v~~ilSGgN~d~~ 318 (347)
T COG1171 243 RPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAG--KIEP--LQGKTVVVILSGGNIDFE 318 (347)
T ss_pred CCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhh--hhhh--cCCCeEEEEecCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999987 3221 257779999999999999
Q ss_pred HHHHhhhC
Q 020236 322 VLWDSFRK 329 (329)
Q Consensus 322 ~~~~~~~~ 329 (329)
.+.+++++
T Consensus 319 ~~~~v~~~ 326 (347)
T COG1171 319 RLAEVLER 326 (347)
T ss_pred HHHHHHhc
Confidence 99998764
No 3
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-69 Score=508.19 Aligned_cols=317 Identities=37% Similarity=0.588 Sum_probs=297.4
Q ss_pred CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g 88 (329)
.+++++|.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.++.+.++||++|+||||
T Consensus 1 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNhg 80 (403)
T PRK08526 1 MLELNKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAASAGNHA 80 (403)
T ss_pred CCCHHHHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECccHHH
Confidence 36899999999999999999999999999998999999999999999999999999999988776667889999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236 89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL 168 (329)
Q Consensus 89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~ 168 (329)
+++|++|+++|++|+||||+.+|..|++.++.+||+|+.++++++++.+.+++++++.+++|++||+|+..++||+|+++
T Consensus 81 ~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~a~~~g~~~v~p~~~~~~i~G~gtia~ 160 (403)
T PRK08526 81 QGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTIAL 160 (403)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCCCCCHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT 247 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~ 247 (329)
||++|+++||+||+|+|+||+++|++.++|..+|.+|||||||.++++++.++..|++...+...++++|+... +++..
T Consensus 161 EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~ 240 (403)
T PRK08526 161 EMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPIN 240 (403)
T ss_pred HHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999877667788999999874 67888
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236 248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~ 327 (329)
|+.+.+++|+++.|+|+|+.+|++++++++|+++||++|+++|++++. . ..+.++++||+++||||+|.+.+.+++
T Consensus 241 ~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~--~--~~~~~~~~Vv~ilsGGnid~~~~~~i~ 316 (403)
T PRK08526 241 LAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQ--K--IDLKKGKKIGVVLSGGNIDVQMLNIII 316 (403)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhC--c--cccccCCeEEEEECCCCCCHHHHHHHH
Confidence 888889999999999999999999999999999999999999999854 2 223367899999999999999999987
Q ss_pred hC
Q 020236 328 RK 329 (329)
Q Consensus 328 ~~ 329 (329)
++
T Consensus 317 ~~ 318 (403)
T PRK08526 317 EK 318 (403)
T ss_pred HH
Confidence 64
No 4
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3e-68 Score=490.25 Aligned_cols=315 Identities=43% Similarity=0.734 Sum_probs=294.0
Q ss_pred CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g 88 (329)
..+++++.++++++.+++++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++++.++|+++|+||||
T Consensus 5 ~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g 84 (321)
T PRK07048 5 LPTYDDVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHA 84 (321)
T ss_pred cCCHHHHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHH
Confidence 46799999999999999999999999999988889999999999999999999999999988655566789999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236 89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL 168 (329)
Q Consensus 89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~ 168 (329)
+|+|++|+.+|++|++|||+..++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+|+.+++|++|+++
T Consensus 85 ~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~ 164 (321)
T PRK07048 85 QAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAK 164 (321)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHH
Confidence 99999999999999999999999999999999999999999988888889999999889999999999999999999999
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT 247 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~ 247 (329)
||++|+++||+||+|+||||+++|++.++|+..|.++||+|||.++++++.++..|+....+...++++|+... ++...
T Consensus 165 EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~ 244 (321)
T PRK07048 165 ELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYT 244 (321)
T ss_pred HHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999877666778999998754 66778
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236 248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~ 327 (329)
++.+.+++|+++.|+|+|+++++++|++++|+++||++|+++++++++ .++ .++++||+|+|||+++++.+.+++
T Consensus 245 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~--~~~---~~~~~vv~i~tGGn~~~~~~~~~~ 319 (321)
T PRK07048 245 FPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRG--KVP---LKGKRVGVIISGGNVDLARFAALL 319 (321)
T ss_pred HHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhC--chh---cCCCeEEEEeCCCCCCHHHHHHHh
Confidence 888999999999999999999999999999999999999999999986 333 267899999999999999999987
Q ss_pred h
Q 020236 328 R 328 (329)
Q Consensus 328 ~ 328 (329)
.
T Consensus 320 ~ 320 (321)
T PRK07048 320 S 320 (321)
T ss_pred c
Confidence 4
No 5
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.3e-67 Score=486.01 Aligned_cols=317 Identities=40% Similarity=0.600 Sum_probs=290.5
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236 10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA 89 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~ 89 (329)
++++++..+++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||.
T Consensus 9 ~~~~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~ 88 (333)
T PRK08638 9 VAIDDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQ 88 (333)
T ss_pred CCHHHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCeEEEeCCcHHHH
Confidence 57899999999999999999999999999888899999999999999999999999999876655677899999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE 169 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E 169 (329)
|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|+.++++|
T Consensus 89 alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~a~E 168 (333)
T PRK08638 89 GVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLE 168 (333)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEEcCcCCCcchhccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccH
Q 020236 170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTW 248 (329)
Q Consensus 170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~ 248 (329)
|++|++++|+||+|+|+||+++|++.+||+.+|+++||+|||.+++++++++..|.+.......|+++|+... ++...+
T Consensus 169 i~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~~~ 248 (333)
T PRK08638 169 ILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTY 248 (333)
T ss_pred HHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887666667888888754 444556
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236 249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328 (329)
Q Consensus 249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~ 328 (329)
+.+++++|+++.|+|+|++++++++++++|++++|++|+++|++... ..+.. .++++||+|+||||+|++++.+++.
T Consensus 249 ~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~--~~~~~-~~~~~vv~v~~Ggn~~~~~~~~~~~ 325 (333)
T PRK08638 249 EIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSG--KLDQY-IQNKKVVAIISGGNVDLSRVSQITG 325 (333)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhC--Ccccc-cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 67788999999999999999999999999999999999999998754 22221 2678999999999999999999875
Q ss_pred C
Q 020236 329 K 329 (329)
Q Consensus 329 ~ 329 (329)
+
T Consensus 326 ~ 326 (333)
T PRK08638 326 H 326 (333)
T ss_pred H
Confidence 3
No 6
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=8.4e-68 Score=500.57 Aligned_cols=315 Identities=38% Similarity=0.618 Sum_probs=293.0
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236 10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA 89 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~ 89 (329)
++++++..++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+....++||++|+||||.
T Consensus 7 ~~~~~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~gvv~aSsGN~g~ 86 (406)
T PRK06382 7 PSFDDILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVITASAGNHAQ 86 (406)
T ss_pred CCHHHHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCeEEEECCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999998886655567899999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE 169 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E 169 (329)
|+|++|+.+|++|+||||+..++.|++.++.+||+|+.++++++++.+.+++++++.+++|++||+|+.+++|++|+++|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~la~~~~~~~v~~~~~~~~i~g~~t~~~E 166 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLE 166 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccH
Q 020236 170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTW 248 (329)
Q Consensus 170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~ 248 (329)
|++|++.||+||+|+|+||+++|++.++|...|++|||||||.+++++++++..++....+..+|+++|+... ++...+
T Consensus 167 i~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~ 246 (406)
T PRK06382 167 IMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTF 246 (406)
T ss_pred HHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887777778999999875 566677
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236 249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328 (329)
Q Consensus 249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~ 328 (329)
+++++++|+++.|+|+|+.++++.+++++|+++||++|+++++++.. ... .++++||+|+||||+|++.+.++++
T Consensus 247 ~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~--~~~---~~~~~Vv~i~sGGn~d~~~~~~~~~ 321 (406)
T PRK06382 247 DIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG--KVD---VKGKKVAIVVSGGNINPLLMSKIIY 321 (406)
T ss_pred HHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc--ccc---CCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 88899999999999999999999999999999999999999988654 211 2578999999999999999998876
Q ss_pred C
Q 020236 329 K 329 (329)
Q Consensus 329 ~ 329 (329)
+
T Consensus 322 ~ 322 (406)
T PRK06382 322 K 322 (406)
T ss_pred H
Confidence 3
No 7
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.9e-67 Score=484.65 Aligned_cols=315 Identities=36% Similarity=0.591 Sum_probs=289.6
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236 10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA 89 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~ 89 (329)
++++++.+++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++..++||++|+||||+
T Consensus 1 ~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~ 80 (322)
T PRK07476 1 VSLADIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGR 80 (322)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHH
Confidence 47899999999999999999999999999989999999999999999999999999999987766666799999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE 169 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E 169 (329)
|+|++|+.+|++|++|+|+.+++.|+++|+.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|++++++|
T Consensus 81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~~~E 160 (322)
T PRK07476 81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVPPFDDPRIIAGQGTIGLE 160 (322)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcceeechhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCC---Ccc
Q 020236 170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL---GDL 246 (329)
Q Consensus 170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~---~~~ 246 (329)
|++|++++|+||+|+|+||+++|++.+||...|++|||+|||.++++++.++..|.+...+...++++++..+. +..
T Consensus 161 i~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~ 240 (322)
T PRK07476 161 ILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRY 240 (322)
T ss_pred HHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999998777777789999886432 334
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHh
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDS 326 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~ 326 (329)
.++.+++++|+++.|+|+|++++++++++++|+++||+++++++++++..+ + ..+++||+++|||+.|.+.+.++
T Consensus 241 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~~~--~---~~~~~Vvvi~tGg~~~~~~~~~~ 315 (322)
T PRK07476 241 TFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAGKI--A---ARDGPIVVVVSGANIDMELHRRI 315 (322)
T ss_pred HHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhCCc--c---cCCCcEEEEECCCCCCHHHHHHH
Confidence 566777899999999999999999999999999999999999999985421 1 12489999999999999999998
Q ss_pred hhC
Q 020236 327 FRK 329 (329)
Q Consensus 327 ~~~ 329 (329)
+++
T Consensus 316 ~~~ 318 (322)
T PRK07476 316 ING 318 (322)
T ss_pred Hhh
Confidence 753
No 8
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-67 Score=499.71 Aligned_cols=314 Identities=44% Similarity=0.695 Sum_probs=296.5
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236 10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA 89 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~ 89 (329)
++++++..+++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++++.++||++|+||||+
T Consensus 4 ~~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~ 83 (404)
T PRK08198 4 LTLDDIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQ 83 (404)
T ss_pred CCHHHHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHH
Confidence 78999999999999999999999999999989999999999999999999999999999987677788999999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE 169 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E 169 (329)
++|++|+.+|++|+||||+.++..|+++++.+||+|+.++.+++++.+.+++++++.+++|++||+|+.+++||+|+|+|
T Consensus 84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~g~~t~a~E 163 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLE 163 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccH
Q 020236 170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTW 248 (329)
Q Consensus 170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~ 248 (329)
|++|++++|+||+|+||||+++|++.+||+.+|++|+|||||.++++++.+++.|++...+...++++|+... ++...+
T Consensus 164 I~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~ 243 (404)
T PRK08198 164 ILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTF 243 (404)
T ss_pred HHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887777788999999865 566778
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236 249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328 (329)
Q Consensus 249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~ 328 (329)
+++++++|+++.|+|+|++++++++++++|+++||+||+++||+++. .+ +.++++||+++|||+.|.+.+.++++
T Consensus 244 ~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~--~~---~~~~~~vv~vl~ggn~~~~~l~~ii~ 318 (404)
T PRK08198 244 EIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSG--KL---DVKGKKVVAVLSGGNIDVLLLSRVIE 318 (404)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhc--hh---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999876 32 24689999999999999999998775
No 9
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3.5e-67 Score=481.03 Aligned_cols=313 Identities=33% Similarity=0.546 Sum_probs=288.6
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236 10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA 89 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~ 89 (329)
++++++.++++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||+
T Consensus 1 ~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 1 VTLQDIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGR 80 (317)
T ss_pred CCHHHHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCeEEEECCCHHHH
Confidence 47899999999999999999999999999888999999999999999999999999998875455567899999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE 169 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E 169 (329)
|+|++|+.+|++|++|||+..++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||++++|++|+++|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~a~E 160 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQGTLGLE 160 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEeeCCCCChHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999988899999999999999999999999
Q ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCcc
Q 020236 170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGDL 246 (329)
Q Consensus 170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~~ 246 (329)
|++|++++|+||+|+|+||+++|++++||+.+|.++||+|||+++++++.++..|+....+..+++++|+..+ .+..
T Consensus 161 i~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~ 240 (317)
T TIGR02991 161 VVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRV 240 (317)
T ss_pred HHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999877766778899988533 2345
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHh
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDS 326 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~ 326 (329)
.++.+++++|+++.|+|+|+++++++|++++|+++||++|+++|++++. . +.++++||+|+||||.|.+.+.++
T Consensus 241 ~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~--~----~~~~~~vvvvltG~n~~~~~~~~~ 314 (317)
T TIGR02991 241 TFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAG--K----IKNPGPCAVIVSGRNIDMDLHKRI 314 (317)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcC--c----cccCCcEEEEeCCCCCCHHHHHHH
Confidence 6778889999999999999999999999999999999999999999854 1 224679999999999999999998
Q ss_pred hh
Q 020236 327 FR 328 (329)
Q Consensus 327 ~~ 328 (329)
+.
T Consensus 315 ~~ 316 (317)
T TIGR02991 315 ID 316 (317)
T ss_pred Hc
Confidence 74
No 10
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-67 Score=481.11 Aligned_cols=314 Identities=27% Similarity=0.401 Sum_probs=289.3
Q ss_pred CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc-cCCeEEEECCchH
Q 020236 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ-AIKGVVTHSSGNH 87 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~-~~~~vv~~ssGN~ 87 (329)
+++++++.+++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++ +.++|+++|+|||
T Consensus 2 ~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~ 81 (322)
T PRK06110 2 MFTLAELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNH 81 (322)
T ss_pred CCCHHHHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHH
Confidence 468999999999999999999999999999988999999999999999999999999999886554 3567999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcch
Q 020236 88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTIS 167 (329)
Q Consensus 88 g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~ 167 (329)
|+|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++++++|++|| |+..++||.|++
T Consensus 82 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~G~~t~~ 160 (322)
T PRK06110 82 GQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPSF-HPDLVRGVATYA 160 (322)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCCC-CChHHhccchHH
Confidence 9999999999999999999999999999999999999999999999999999999888899999998 567789999999
Q ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcc
Q 020236 168 LEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDL 246 (329)
Q Consensus 168 ~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~ 246 (329)
+||++|++++|+||+|+|+||+++|++.++|..+|++|||+|||.+++++++++..|+....+...++++|+... +++.
T Consensus 161 ~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 240 (322)
T PRK06110 161 LELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPE 240 (322)
T ss_pred HHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHH
Confidence 999999999999999999999999999999999999999999999999999999999877666678999998764 4456
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHh
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDS 326 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~ 326 (329)
.++++++++|+++.|+|+|++++++++++++|+++||+++++++++++. .+. .++++||+|+|||++|++.+.++
T Consensus 241 ~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~--~~~---~~~~~Vv~i~tGgn~d~~~~~~~ 315 (322)
T PRK06110 241 ALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQE--RER---LAGKRVGLVLSGGNIDRAVFARV 315 (322)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhC--hhh---hCCCcEEEEECCCCCCHHHHHHH
Confidence 7888899999999999999999999999999999999999999999986 332 26789999999999999999987
Q ss_pred hh
Q 020236 327 FR 328 (329)
Q Consensus 327 ~~ 328 (329)
+.
T Consensus 316 ~~ 317 (322)
T PRK06110 316 LA 317 (322)
T ss_pred Hh
Confidence 64
No 11
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=7.1e-67 Score=495.91 Aligned_cols=315 Identities=33% Similarity=0.560 Sum_probs=292.8
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236 10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA 89 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~ 89 (329)
+++++|..+++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||.
T Consensus 7 ~~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~~Vv~aSsGN~g~ 86 (420)
T PRK08639 7 VSAKDIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCASAGNHAQ 86 (420)
T ss_pred CCHHHHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHH
Confidence 79999999999999999999999999999988999999999999999999999999999875554568899999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE---EEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcc
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ---VIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTI 166 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~---v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~ 166 (329)
++|++|+.+|++|+||||+.+++.|++.++.+||+ |+..+.+++++.+.+.+++++.+++|++||+|+.+++|++|+
T Consensus 87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g~~~~~~~~~~~~~~G~~ti 166 (420)
T PRK08639 87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIPPFDDPDVIAGQGTV 166 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcCCcccCCCCChhHhcchhHH
Confidence 99999999999999999999999999999999996 444567899999999999998899999999999999999999
Q ss_pred hHHHHhhCCC---CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-
Q 020236 167 SLEFLEQVPL---LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF- 242 (329)
Q Consensus 167 ~~Ei~~ql~~---~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~- 242 (329)
++||++|++. ||+||+|+|+||+++|++.++|..+|+++||||||.++++++.+++.|++...+...++++|+...
T Consensus 167 g~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~ 246 (420)
T PRK08639 167 AVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVAR 246 (420)
T ss_pred HHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCC
Confidence 9999999984 999999999999999999999999999999999999999999999999988777888999999865
Q ss_pred CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHH
Q 020236 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGV 322 (329)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~ 322 (329)
++...++++++++|+++.|+|+|+.++++++++++|+++||+||+++||+++. .+. + ++++||+++||||+|++.
T Consensus 247 ~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~--~~~--~-~~~~vv~v~sGgn~d~~~ 321 (420)
T PRK08639 247 VGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELY--KDE--I-KGKTVVCVISGGNNDIER 321 (420)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhh--hhh--c-CCCeEEEEeCCCCCCHHH
Confidence 66778888899999999999999999999999999999999999999999875 332 2 678999999999999999
Q ss_pred HHHhhhC
Q 020236 323 LWDSFRK 329 (329)
Q Consensus 323 ~~~~~~~ 329 (329)
+.++++|
T Consensus 322 ~~~~~~~ 328 (420)
T PRK08639 322 MPEIKER 328 (420)
T ss_pred HHHHHHH
Confidence 9998764
No 12
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=7.7e-67 Score=493.33 Aligned_cols=312 Identities=32% Similarity=0.538 Sum_probs=289.2
Q ss_pred HHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHH
Q 020236 13 SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALS 92 (329)
Q Consensus 13 ~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A 92 (329)
++|..+++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++.+.++||++|+||||.++|
T Consensus 1 ~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A 80 (409)
T TIGR02079 1 QDIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFA 80 (409)
T ss_pred ChHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHH
Confidence 47889999999999999999999999989999999999999999999999999998865555567899999999999999
Q ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE---EEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236 93 LAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ---VIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE 169 (329)
Q Consensus 93 ~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~---v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E 169 (329)
++|+++|++|+||||+.+++.|++.++.+||+ |+.++++++++.+.+++++++.+++|++||+||.+++|++|+++|
T Consensus 81 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~~g~~ti~~E 160 (409)
T TIGR02079 81 YACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGTFIPPFDDPRIIEGQGTVAAE 160 (409)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCHhHhhhhHHHHHH
Confidence 99999999999999999999999999999996 555677899999999999998899999999999999999999999
Q ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236 170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT 247 (329)
Q Consensus 170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~ 247 (329)
|++|++ .||+||+|+|+||+++|++.++|..+|+++||||||.++++++.+++.|++...+...++++|+... ++...
T Consensus 161 i~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~ 240 (409)
T TIGR02079 161 ILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLN 240 (409)
T ss_pred HHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHH
Confidence 999998 5999999999999999999999999999999999999999999999999887777778999999875 66677
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236 248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~ 327 (329)
|+.+.+++|+++.|+|+|+.++++++++++|+++||+||+++||+++. .++ .++++||+|+||||+|++.+.+++
T Consensus 241 ~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~--~~~---~~~~~Vv~ilsGgn~d~~~~~~~~ 315 (409)
T TIGR02079 241 FKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERL--GEE---IKGKTVVCVVSGGNNDIERTEEIR 315 (409)
T ss_pred HHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhh--hhh---cCCCeEEEEECCCCCCHHHHHHHH
Confidence 888899999999999999999999999999999999999999999876 332 268899999999999999999987
Q ss_pred hC
Q 020236 328 RK 329 (329)
Q Consensus 328 ~~ 329 (329)
+|
T Consensus 316 ~~ 317 (409)
T TIGR02079 316 ER 317 (409)
T ss_pred HH
Confidence 64
No 13
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=8.4e-67 Score=501.05 Aligned_cols=307 Identities=34% Similarity=0.542 Sum_probs=287.8
Q ss_pred HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236 20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
.++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+..+.+.++||++|+||||.++|++|+.+|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha~gvA~aA~~lG 108 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQGVALAAARLG 108 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHHHHHHHHHHHhC
Confidence 36778999999999999999999999999999999999999999999998765556788999999999999999999999
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCC
Q 020236 100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLD 178 (329)
Q Consensus 100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d 178 (329)
++|+||||+.+|..|++.++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||+|+++||++|++ .||
T Consensus 109 i~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~pfdd~~viaGqgTig~EI~eQ~~~~~D 188 (521)
T PRK12483 109 VKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVPPFDDPDVIAGQGTVAMEILRQHPGPLD 188 (521)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeCCCCChHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 599
Q ss_pred EEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCc
Q 020236 179 TIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDD 257 (329)
Q Consensus 179 ~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~ 257 (329)
+||+|+|+||+++|++.++|...|++|||||||.+++++..++..|++...+...++++|+... ++...|+++++++|+
T Consensus 189 ~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~ 268 (521)
T PRK12483 189 AIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDE 268 (521)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999988777888999999865 778889999999999
Q ss_pred EEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236 258 VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK 329 (329)
Q Consensus 258 ~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~ 329 (329)
++.|+|+|+.++++++++++|+++||+||+++||++++ .+++.+ ++++||+|+||||+|++.+.+++++
T Consensus 269 vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~--~~~~~~-~g~~VV~IlsGgNid~~~l~~i~~r 337 (521)
T PRK12483 269 VVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKY--AEREGI-EGQTLVAIDSGANVNFDRLRHVAER 337 (521)
T ss_pred EEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHH--HHhcCC-CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 444333 5789999999999999999998764
No 14
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-66 Score=475.30 Aligned_cols=311 Identities=37% Similarity=0.586 Sum_probs=287.3
Q ss_pred HHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHH
Q 020236 12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAAL 91 (329)
Q Consensus 12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~ 91 (329)
++++.++++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++++++|+||||+|+
T Consensus 4 ~~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~vv~aSsGN~g~al 83 (317)
T PRK06815 4 FDAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSGNHGQGV 83 (317)
T ss_pred HHHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCceEEEECCChHHHHH
Confidence 68999999999999999999999999988899999999999999999999999999977554456789999999999999
Q ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHH
Q 020236 92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFL 171 (329)
Q Consensus 92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~ 171 (329)
|++|+.+|++|++|||+..++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+|++.++|++++++||+
T Consensus 84 A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 163 (317)
T PRK06815 84 ALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELV 163 (317)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecCCCChhhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred hhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC--CCcccHH
Q 020236 172 EQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF--LGDLTWP 249 (329)
Q Consensus 172 ~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~--~~~~~~~ 249 (329)
+|+++||+||+|+|+||+++|++.+|+++.|+++||||||.++++++++++.|+..+.+..+++++|+... ++...++
T Consensus 164 ~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~ 243 (317)
T PRK06815 164 EQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFP 243 (317)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877777777888888543 3344566
Q ss_pred HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~ 327 (329)
.+.+++|+++.|+|+|++++++++++++|+++||+||+++++++++ .++ .++++||+|+|||+.+.+.+.+++
T Consensus 244 ~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~--~~~---~~~~~vv~i~tG~~~~~~~~~~~~ 316 (317)
T PRK06815 244 LCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKL--APR---YQGKKVAVVLCGKNIVLEKYLEAV 316 (317)
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhC--chh---cCCCcEEEEECCCCCCHHHHHHHh
Confidence 7789999999999999999999999999999999999999999987 433 257899999999999999998876
No 15
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=4.5e-66 Score=474.37 Aligned_cols=307 Identities=32% Similarity=0.484 Sum_probs=281.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE
Q 020236 2 EANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT 81 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~ 81 (329)
|.|..+..++++++.++++++.+++++|||++++.+ +||+|+|++|||||||||++.+++..+.+++..++||+
T Consensus 13 ~~~~~~~~~~~~~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~ 86 (349)
T PRK08813 13 EPDVGDVAVSVADVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVIC 86 (349)
T ss_pred CCCcccccCCHHHHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 345555668899999999999999999999998765 49999999999999999999999999877666668999
Q ss_pred ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCccccc
Q 020236 82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIIS 161 (329)
Q Consensus 82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~ 161 (329)
+|+||||.|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++
T Consensus 87 aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~~~~a~~~a~~la~~~g~~~v~~~~np~~i~ 166 (349)
T PRK08813 87 ASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNSYDEAYAFARELADQNGYRFLSAFDDPDVIA 166 (349)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCccCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred ccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccccc
Q 020236 162 GQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA 241 (329)
Q Consensus 162 g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~ 241 (329)
||+|+++||++|. ||+||+|+|+||+++|++.++|+ +.++||+|||+++++++.++. |.....+...|+++|+..
T Consensus 167 G~~Tig~EI~e~~--pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~-g~~~~~~~~~tiadgl~~ 241 (349)
T PRK08813 167 GQGTVGIELAAHA--PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIR-GDLREIAPVATLADGVKV 241 (349)
T ss_pred HHHHHHHHHHcCC--CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHc-CCCcccCCCCceeccccc
Confidence 9999999999984 79999999999999999999995 579999999999999999998 665555566799999986
Q ss_pred C-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCCh
Q 020236 242 F-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDL 320 (329)
Q Consensus 242 ~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~ 320 (329)
. ++...+.+..+++|+++.|+|+|+.+++++|++++|+++||+||+++||++++ ++++|++|+||||.|.
T Consensus 242 ~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~---------~~~~v~~vlsGgN~d~ 312 (349)
T PRK08813 242 KIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV---------SGKRKCAVVSGGNIDA 312 (349)
T ss_pred CCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh---------CCCCEEEEECCCCCCH
Confidence 5 56677888889999999999999999999999999999999999999998764 4578999999999999
Q ss_pred HHHHHhhh
Q 020236 321 GVLWDSFR 328 (329)
Q Consensus 321 ~~~~~~~~ 328 (329)
+.+.+++.
T Consensus 313 ~~~~~~~~ 320 (349)
T PRK08813 313 TVLATLLS 320 (349)
T ss_pred HHHHHHHH
Confidence 99998775
No 16
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2.6e-66 Score=500.05 Aligned_cols=305 Identities=30% Similarity=0.471 Sum_probs=287.5
Q ss_pred HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.++.+.++||++|+||||+++|++|+++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAqgvA~aA~~lGi 181 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQRLGC 181 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 56788999999999999999999999999999999999999999999988666677889999999999999999999999
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCCE
Q 020236 101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDT 179 (329)
Q Consensus 101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~ 179 (329)
+|+||||+.++..|++.++.+||+|+.++.+++++.+.+++++++.+++|++||+||.+++||+|+|+||++|++ .+|+
T Consensus 182 ka~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~la~e~g~~fi~pfddp~viaGqgTig~EI~eQl~~~~D~ 261 (591)
T PLN02550 182 DAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIPPFDHPDVIAGQGTVGMEIVRQHQGPLHA 261 (591)
T ss_pred CEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEECCCCChHHHHHHHHHHHHHHHHcCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 4999
Q ss_pred EEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcE
Q 020236 180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDV 258 (329)
Q Consensus 180 vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~ 258 (329)
||+|+|+||+++|++.++|..+|++|||||||.++++++.+++.|+++..+...++++|+... ++...++++++++|++
T Consensus 262 VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~v 341 (591)
T PLN02550 262 IFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGV 341 (591)
T ss_pred EEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEE
Confidence 999999999999999999999999999999999999999999999988888888999999975 7888999999999999
Q ss_pred EEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236 259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328 (329)
Q Consensus 259 ~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~ 328 (329)
+.|+|+|+.+|++.+++++|+++||+||+++||++++ .+++.+ ++++||+|+||||+|++.+.++.+
T Consensus 342 V~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~--~~~~~~-~g~~Vv~vlsGgNid~~~l~~v~~ 408 (591)
T PLN02550 342 VLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAY--CKYYGL-KDENVVAITSGANMNFDRLRIVTE 408 (591)
T ss_pred EEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHH--HHhcCC-CCCeEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999986 443334 678999999999999999998865
No 17
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=6.4e-66 Score=495.58 Aligned_cols=306 Identities=32% Similarity=0.538 Sum_probs=288.8
Q ss_pred HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
++.+.+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+.++.+.++||++|+||||.++|++|+++|+
T Consensus 10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha~~vA~aa~~~Gi 89 (499)
T TIGR01124 10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHAQGVAFSAARLGL 89 (499)
T ss_pred HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 68899999999999999999999999999999999999999999999987666667889999999999999999999999
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCCE
Q 020236 101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDT 179 (329)
Q Consensus 101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~ 179 (329)
+|+||||+.+|..|++.++.+||+|+.++.+++++.+.+++++++.+++|++||+||.+++|++|+|+||++|++ ++|+
T Consensus 90 ~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~la~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~~~~D~ 169 (499)
T TIGR01124 90 KALIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFIHPFDDPLVIAGQGTLALEILRQVANPLDA 169 (499)
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHHHHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcE
Q 020236 180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDV 258 (329)
Q Consensus 180 vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~ 258 (329)
||+|+||||+++|++.++|..+|++|||||||.++++++.++..|++...+...++++|+... ++...|+++++++|++
T Consensus 170 vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~v 249 (499)
T TIGR01124 170 VFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDI 249 (499)
T ss_pred EEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999988888889999999875 7788999999999999
Q ss_pred EEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236 259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK 329 (329)
Q Consensus 259 ~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~ 329 (329)
+.|+|+|+.+|++.+++++|+++||+||+++||++++ .+++.+ ++++||+|+||||+|++++.+++++
T Consensus 250 v~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~--~~~~~~-~~~~vv~i~sG~n~~~~~l~~~~~r 317 (499)
T TIGR01124 250 VTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKY--VALHGI-RGQTLVAILSGANMNFHRLRYVSER 317 (499)
T ss_pred EEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHh--hhhcCC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 444433 5789999999999999999998764
No 18
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2.2e-65 Score=483.98 Aligned_cols=313 Identities=39% Similarity=0.612 Sum_probs=287.3
Q ss_pred CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g 88 (329)
.++++++.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||
T Consensus 4 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~aSsGN~g 83 (403)
T PRK07334 4 MVTLADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMSAGNHA 83 (403)
T ss_pred CcCHHHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcEEEECCcHHH
Confidence 46899999999999999999999999999988899999999999999999999999999987666566789999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236 89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL 168 (329)
Q Consensus 89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~ 168 (329)
+|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||+|+++
T Consensus 84 ~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~g~~t~~~ 163 (403)
T PRK07334 84 QGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVHPYDDPAVIAGQGTVAL 163 (403)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEecCCCCCHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT 247 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~ 247 (329)
||++|+++||+||+|+|+||+++|++++||..+|++|||+|||.++++++.++..+.. ....+++++|++.+ ++...
T Consensus 164 Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~--~~~~~~~~~gi~~~~~~~~~ 241 (403)
T PRK07334 164 EMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVAL--PCGGSTIAEGIAVKQPGQLT 241 (403)
T ss_pred HHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCc--cCCCCCccceecCCCccHHH
Confidence 9999999999999999999999999999999999999999999999999988866432 12456888998864 45556
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236 248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~ 327 (329)
+.+++.++|+++.|+|+|++++++.|++++|+++||+||++++|+++. .+. .++++||+++|||+.|.+.+++++
T Consensus 242 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~--~~~---~~~~~vv~i~~ggn~d~~~l~~il 316 (403)
T PRK07334 242 LEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAY--PER---FRGRKVGLVLSGGNIDTRLLANVL 316 (403)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhC--chh---cCCCeEEEEECCCCCCHHHHHHHH
Confidence 677788999999999999999999999999999999999999999876 332 267899999999999999999887
Q ss_pred h
Q 020236 328 R 328 (329)
Q Consensus 328 ~ 328 (329)
+
T Consensus 317 ~ 317 (403)
T PRK07334 317 L 317 (403)
T ss_pred H
Confidence 5
No 19
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2e-65 Score=494.18 Aligned_cols=307 Identities=34% Similarity=0.558 Sum_probs=288.1
Q ss_pred HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236 20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
.++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.+.++||++|+||||.++|++|+.+|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha~avA~aa~~lG 91 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHAQGVALSAARLG 91 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHHHHHHHHHHHcC
Confidence 37889999999999999999999999999999999999999999999998765556788999999999999999999999
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCC-CC
Q 020236 100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPL-LD 178 (329)
Q Consensus 100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~-~d 178 (329)
++|+||||+.+|..|++.++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|++|+++||++|+++ ||
T Consensus 92 i~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~~~~D 171 (504)
T PRK09224 92 IKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPHPLD 171 (504)
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 99
Q ss_pred EEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCc
Q 020236 179 TIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDD 257 (329)
Q Consensus 179 ~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~ 257 (329)
+||+|+||||+++|++.++|..+|++|||||||.++++++.+++.|++...+...++++|+... ++...|+++++++|+
T Consensus 172 ~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~ 251 (504)
T PRK09224 172 AVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDD 251 (504)
T ss_pred EEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCe
Confidence 9999999999999999999999999999999999999999999999988777888999999865 677889999999999
Q ss_pred EEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236 258 VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK 329 (329)
Q Consensus 258 ~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~ 329 (329)
++.|+|+|+.+|++++++++|+++||+||+++||++++ .+++.+ ++++||+|+||||+|++.+.+++++
T Consensus 252 ~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~--~~~~~~-~g~~vv~i~sG~n~~~~~l~~~~~r 320 (504)
T PRK09224 252 VITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKY--VAQHGI-EGETLVAILSGANMNFDRLRYVAER 320 (504)
T ss_pred EEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHh--hhhcCC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 444444 4789999999999999999998764
No 20
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=5.8e-65 Score=469.21 Aligned_cols=313 Identities=38% Similarity=0.567 Sum_probs=283.5
Q ss_pred CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc-CCeEEEECCchH
Q 020236 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA-IKGVVTHSSGNH 87 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~-~~~vv~~ssGN~ 87 (329)
.+++++|.++++++.+.+++|||+++++|++.+|.+||+|+|++||+||||||++.+++.++.+++. .++|+++|+|||
T Consensus 4 ~~~~~~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~ 83 (338)
T PRK06608 4 LQNPQNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNH 83 (338)
T ss_pred CCCHHHHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHH
Confidence 4689999999999999999999999999999999999999999999999999999999999866544 268999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcch
Q 020236 88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTIS 167 (329)
Q Consensus 88 g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~ 167 (329)
|+++|++|+.+|++|++|||+..++.|+++++.+||+|+.++. .+++.+.+++ .+++++||++||+|+.+++|+++++
T Consensus 84 g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~-~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~g~~t~a 161 (338)
T PRK06608 84 GQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT-RQEAEEKAKE-DEEQGFYYIHPSDSDSTIAGAGTLC 161 (338)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC-HHHHHHHHHH-HHhCCCEEcCCCCCHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999975 4677777777 6667899999999999999999999
Q ss_pred HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccC-CC
Q 020236 168 LEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAF-LG 244 (329)
Q Consensus 168 ~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~-~~ 244 (329)
+||++|++ +||+||+|+|+||+++|++.++|..+|.++||+|||.++++++.+++.|+..... ...++++|+..+ ++
T Consensus 162 ~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~ 241 (338)
T PRK06608 162 YEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVS 241 (338)
T ss_pred HHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCC
Confidence 99999998 8999999999999999999999999999999999999999999999999876554 457899999864 55
Q ss_pred cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHH
Q 020236 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLW 324 (329)
Q Consensus 245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~ 324 (329)
...|+.++. +|+++.|+|+|++++++++++++|+++||+||++++|++++ .++. .++++||+|+|||++|...+.
T Consensus 242 ~~~~~~~~~-~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~--~~~~--~~~~~Vv~v~tgg~~d~~~~~ 316 (338)
T PRK06608 242 ARTFEYLKK-LDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNW--LKTQ--SKPQKLLVILSGGNIDPILYN 316 (338)
T ss_pred HHHHHHHHh-CCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhh--chhh--cCCCeEEEEeCCCccCHHHHH
Confidence 666776665 68999999999999999999999999999999999999986 4432 367899999999999999999
Q ss_pred Hhhh
Q 020236 325 DSFR 328 (329)
Q Consensus 325 ~~~~ 328 (329)
++++
T Consensus 317 ~~~~ 320 (338)
T PRK06608 317 ELWK 320 (338)
T ss_pred HHHH
Confidence 8765
No 21
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=5.2e-65 Score=465.56 Aligned_cols=305 Identities=34% Similarity=0.515 Sum_probs=277.6
Q ss_pred CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236 9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g 88 (329)
.+++++|.++++++.+.+++|||+++++++.. +.+||+|+|++|||||||||++.+++..+.+ +.++|+++|+||||
T Consensus 4 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~--~~~~vv~aSsGN~g 80 (310)
T PRK08246 4 MITRSDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV--PAAGVVAASGGNAG 80 (310)
T ss_pred CCCHHHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc--cCCeEEEeCCCHHH
Confidence 57899999999999999999999999998765 7899999999999999999999999987643 56789999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236 89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL 168 (329)
Q Consensus 89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~ 168 (329)
+|+|++|+.+|++|+||+|+..++.|+.+++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|++|+++
T Consensus 81 ~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~t~~~ 160 (310)
T PRK08246 81 LAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHAYDQPEVLAGAGTLGL 160 (310)
T ss_pred HHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCCCCChhhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT 247 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~ 247 (329)
||++|++.||+||+|+|+||+++|++.+|+. .++|++|||.++++++.+++.|+....+...+..++++.+ ++...
T Consensus 161 Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 237 (310)
T PRK08246 161 EIEEQAPGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIA 237 (310)
T ss_pred HHHHhcCCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHH
Confidence 9999999999999999999999999999965 4899999999999999999999877665445555666654 66677
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHH
Q 020236 248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVL 323 (329)
Q Consensus 248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~ 323 (329)
|++.+++.|+++.|+|+|++++++++++++|+++||++|++++++++. ..+ ..++++||+|+||||.|++++
T Consensus 238 ~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~--~~~--~~~~~~vv~i~~g~n~d~~~~ 309 (310)
T PRK08246 238 FALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSG--AYV--PAPGERVAVVLCGANTDPATL 309 (310)
T ss_pred HHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhC--Ccc--ccCCCeEEEEECCCCCChhhc
Confidence 888899999999999999999999999999999999999999999765 222 236789999999999998865
No 22
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=5.7e-65 Score=478.99 Aligned_cols=295 Identities=44% Similarity=0.704 Sum_probs=277.4
Q ss_pred CCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcC
Q 020236 29 TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPK 108 (329)
Q Consensus 29 TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~ 108 (329)
|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+++..++|+++|+||||.++|++|+++|++|++|||+
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~ 80 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPE 80 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 89999999999999999999999999999999999999999977766678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCCh
Q 020236 109 NAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGG 188 (329)
Q Consensus 109 ~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg 188 (329)
.++..|+++++.+||+|+.++.+++++.+.+++++++.+++|++||+|+..++|++|+++||++|+++||+||+|+||||
T Consensus 81 ~~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg 160 (380)
T TIGR01127 81 SAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGG 160 (380)
T ss_pred CCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCChhhhhhhHHHHHHHHHhCCCCCEEEEEeChHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHH
Q 020236 189 LISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEII 267 (329)
Q Consensus 189 ~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~ 267 (329)
+++|++.++|...|++|||||||.++++++.++..|++.+.+...++++|+... ++...++++.+++|+++.|+|+|+.
T Consensus 161 ~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~ 240 (380)
T TIGR01127 161 LISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIA 240 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHH
Confidence 999999999999999999999999999999999999988877888999999864 5666777888999999999999999
Q ss_pred HHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236 268 EAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328 (329)
Q Consensus 268 ~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~ 328 (329)
+|+++|++++|+++||++|++++++++. ... .++++||+++||||+|.+.+..+++
T Consensus 241 ~a~~~l~~~~gi~~e~s~a~~laa~~~~--~~~---~~~~~vv~i~sGGn~d~d~l~~vi~ 296 (380)
T TIGR01127 241 NAIYLLLERHKILAEGAGAAGVAALLEQ--KVD---VKGKKIAVVLSGGNIDLNLLNKIIE 296 (380)
T ss_pred HHHHHHHHhcCeEechHHHHHHHHHHhC--ccc---cCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999875 221 2678999999999999999998875
No 23
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=9.8e-65 Score=464.62 Aligned_cols=303 Identities=48% Similarity=0.768 Sum_probs=280.4
Q ss_pred HHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHH
Q 020236 12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAAL 91 (329)
Q Consensus 12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~ 91 (329)
+++|.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++..++|+++|+||||+|+
T Consensus 1 ~~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~al 80 (304)
T cd01562 1 LEDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGV 80 (304)
T ss_pred ChHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHH
Confidence 47899999999999999999999999988899999999999999999999999999998766556789999999999999
Q ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHH
Q 020236 92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFL 171 (329)
Q Consensus 92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~ 171 (329)
|++|+.+|++|++|+|++.++.|+++|+.+||+|+.++++++++.+.+++++++.+++|++||+|+.++.|+.++++||+
T Consensus 81 A~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~la~~~~~~~~~~~~n~~~~~g~~~~~~Ei~ 160 (304)
T cd01562 81 AYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIHPFDDPDVIAGQGTIGLEIL 160 (304)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHH
Q 020236 172 EQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPI 250 (329)
Q Consensus 172 ~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~ 250 (329)
+|++.||+||+|+|||||++|++++||..+|.+|||+|+|.++++++.++..|.....+...++++|++.. +....+.+
T Consensus 161 ~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (304)
T cd01562 161 EQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEI 240 (304)
T ss_pred HhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHH
Confidence 99988999999999999999999999999999999999999999999999888776655567888888764 34445667
Q ss_pred HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCC
Q 020236 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD 319 (329)
Q Consensus 251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~ 319 (329)
.+++.|.++.|+|+|+++++++|+++||+++||+||+++++++++ .+++ ++++||+++|||+.|
T Consensus 241 ~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~--~~~~---~~~~vv~i~tGG~~~ 304 (304)
T cd01562 241 IRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSG--KLDL---KGKKVVVVLSGGNID 304 (304)
T ss_pred HHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhC--cccc---CCCeEEEEecCCCCC
Confidence 788999999999999999999999999999999999999999987 4443 678999999999864
No 24
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.1e-64 Score=464.36 Aligned_cols=301 Identities=26% Similarity=0.391 Sum_probs=274.7
Q ss_pred CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc--CCeEEEECCchHHHHHHHHHHHcCCCEEEE
Q 020236 28 KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA--IKGVVTHSSGNHAAALSLAAKLRGIPAYIV 105 (329)
Q Consensus 28 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~--~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~ 105 (329)
+|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++. .++|+++|+||||.|+|++|+.+|++|++|
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv 80 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIV 80 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence 699999999998889999999999999999999999999999876653 678999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHcCCEEEEECCC-HHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCCC---CCEE
Q 020236 106 IPKNAPKCKVENVVRYGGQVIWSEAT-MHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVPL---LDTI 180 (329)
Q Consensus 106 ~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~---~d~v 180 (329)
+|+..++.|+++|+.+||+|+.++++ ++++.+.+++++++. +++|++||+||.+++||.++++||++|++. ||+|
T Consensus 81 ~p~~~~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~~D~v 160 (316)
T cd06448 81 VPESTKPRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIAQQLQSQEKVDAI 160 (316)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHHHHccccCCCCEE
Confidence 99999999999999999999999988 777777888888775 899999999999999999999999999985 9999
Q ss_pred EEeCCCChHHHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcE
Q 020236 181 IVPISGGGLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDV 258 (329)
Q Consensus 181 v~~~GtGg~~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~ 258 (329)
|+|+|+||+++|++.+|++.+ |++++|+|||.+++++..+++.|+....+..+|+++|++.+ +++..|+.+++..|++
T Consensus 161 v~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~ 240 (316)
T cd06448 161 VCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKS 240 (316)
T ss_pred EEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeE
Confidence 999999999999999999996 99999999999999999999999876666667999999876 5566788888889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccc---cccCCCCCCCCeEEEEeCCCCC-ChHHHHHhhh
Q 020236 259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDG---FRKNPAWQDSKKIGIVLSGGNV-DLGVLWDSFR 328 (329)
Q Consensus 259 ~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~---~~~~~~~~~~~~vv~v~tgg~~-~~~~~~~~~~ 328 (329)
+.|+|+|+++++++|++++|+++||+||++++|+++.. +.+++.+.++++||+++||||. |++.+.++++
T Consensus 241 v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~~~~~~~ 314 (316)
T cd06448 241 EVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQLKEYKK 314 (316)
T ss_pred EEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998641 2333456689999999999997 9999999886
No 25
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=9e-65 Score=425.69 Aligned_cols=313 Identities=58% Similarity=0.921 Sum_probs=299.5
Q ss_pred CCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCch
Q 020236 7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGN 86 (329)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN 86 (329)
.+.++++|+++++.|+.+++..||++.++.|.+..|.+||+|+|++|-+||||.|+|.+.++.+..+++.+++++.||||
T Consensus 4 ~~~~t~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvithSSGN 83 (323)
T KOG1251|consen 4 KYKITYEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVITHSSGN 83 (323)
T ss_pred eecCCHHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEeecCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999887677889999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcc
Q 020236 87 HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTI 166 (329)
Q Consensus 87 ~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~ 166 (329)
||.|+|++|+..|+|++|+||.++|..|+..++.||++|++++.+.+++.+.++++.++.+++.++||++|..+.|++|+
T Consensus 84 HaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTi 163 (323)
T KOG1251|consen 84 HAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTI 163 (323)
T ss_pred HHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCc
Q 020236 167 SLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGD 245 (329)
Q Consensus 167 ~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~ 245 (329)
+.|+++|.+..|.+|+|+|+||+++|++...+.+.|+++|++|||++.+.-.+++..|...+++.+.||++|.... +|+
T Consensus 164 A~ElleqVg~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~ 243 (323)
T KOG1251|consen 164 ALELLEQVGEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGP 243 (323)
T ss_pred HHHHHHhhCccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHH
Q 020236 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLW 324 (329)
Q Consensus 246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~ 324 (329)
..|+++++++|++++|+|+|+.++++.++++-.+.+||+++.++||++....+ ...++|.+|+||||.|+..+.
T Consensus 244 ~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~-----~~~K~igIiLsGGNVD~~~~~ 317 (323)
T KOG1251|consen 244 LTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA-----LNIKRIGIILSGGNVDLNSWA 317 (323)
T ss_pred cchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH-----hccCceEEEEeCCcccccchh
Confidence 99999999999999999999999999999999999999999999999876322 136899999999999998743
No 26
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-64 Score=450.81 Aligned_cols=313 Identities=39% Similarity=0.594 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHH
Q 020236 12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAAL 91 (329)
Q Consensus 12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~ 91 (329)
+.++..++.++.+.+-.|||.+...|++..|.++|+|+|++||+||||.||+.+++..+.+++++.+|+++|.||||.|+
T Consensus 50 ~~~~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~ 129 (457)
T KOG1250|consen 50 FYDISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAA 129 (457)
T ss_pred cchhhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHH
Confidence 66777888899999999999999899999999999999999999999999999999998777779999999999999999
Q ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHH
Q 020236 92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFL 171 (329)
Q Consensus 92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~ 171 (329)
|++|+++|+|++||||..+|..|.+.++.+||+|+..+.+++++...+.++++++++.|++|||+|+.++|++|++.||.
T Consensus 130 Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke~gl~yI~pfDhP~I~aGqgTig~EIl 209 (457)
T KOG1250|consen 130 AYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGEDWDEAKAFAKRLAKENGLTYIPPFDHPDIWAGQGTIGLEIL 209 (457)
T ss_pred HHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecccHHHHHHHHHHHHHhcCceecCCCCCchhhcCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCC-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHH
Q 020236 172 EQVPLLD-TIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWP 249 (329)
Q Consensus 172 ~ql~~~d-~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~ 249 (329)
+|++.|| +|+||||+||+++|++.++|+..|.++|||||+.+|+++..+++.|+++..+...++++|++.. +|...++
T Consensus 210 ~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~ 289 (457)
T KOG1250|consen 210 EQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFE 289 (457)
T ss_pred HhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHH
Confidence 9999666 9999999999999999999999999999999999999999999999999999999999999986 9999999
Q ss_pred HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328 (329)
Q Consensus 250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~ 328 (329)
....+.|+++.|+|+|+..++.++.+.|..++||++|+++||.+..++ . ..+++++|.+++|||++.+.+..+++
T Consensus 290 ~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~~~--~--~lk~~~vv~ilsG~n~~~~~L~~vie 364 (457)
T KOG1250|consen 290 LAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSGKL--N--HLKGKKVVSILSGGNIDFDSLGRVIE 364 (457)
T ss_pred HHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhccc--c--ccCCceEEeecccCCCCcccccceeE
Confidence 999999999999999999999999999999999999999999988732 2 23789999999999999999876543
No 27
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=4.6e-63 Score=467.57 Aligned_cols=327 Identities=18% Similarity=0.214 Sum_probs=285.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhccc----------------cCCCCCccchhhhhhcC--------CeEEEEecCCCC-CC
Q 020236 2 EANGEKYAANFSSIKEAQKRISLY----------------IHKTPVLSSETLNSMSG--------RSLFFKCECFQK-GG 56 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----------------i~~TPl~~~~~l~~~~g--------~~i~~K~E~~np-tG 56 (329)
|..-|...++++|+..+++++..+ +++|||++++.|++.+| .+||+|+|++|| ||
T Consensus 33 ~~~~~~~~~~~~di~~A~~~i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tG 112 (441)
T PRK02991 33 AEGLPYVGLTEADVQDAEARLKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISG 112 (441)
T ss_pred hhccccCCCCHHHHHHHHHHHHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcC
Confidence 444566778999999999999987 89999999999988775 699999999999 99
Q ss_pred ccchhhHHHHHhcCc-----hhcc--------------------CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC
Q 020236 57 AFKFRGASNAVLSLD-----EDQA--------------------IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP 111 (329)
Q Consensus 57 S~KdR~a~~~l~~a~-----~~~~--------------------~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~ 111 (329)
|||||++.+++..+. +.+. ..+||++|+||||.|+|++|+.+|++|+||||++++
T Consensus 113 SFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~ 192 (441)
T PRK02991 113 SIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADAR 192 (441)
T ss_pred ChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 999999999987642 1211 137999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC----C-----CCEEE
Q 020236 112 KCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP----L-----LDTII 181 (329)
Q Consensus 112 ~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~----~-----~d~vv 181 (329)
+.|++.++.+||+|+.++++++++.+.+++++++. +++|++++++++.++||+|+++||++|++ + ||+||
T Consensus 193 ~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~~~~~~~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~Vv 272 (441)
T PRK02991 193 QWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDPNCYFIDDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVY 272 (441)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCeEeCCCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEE
Confidence 99999999999999999999999999999998875 68899999899999999999999999996 2 66899
Q ss_pred EeCCCChHHHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhh
Q 020236 182 VPISGGGLISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRD 253 (329)
Q Consensus 182 ~~~GtGg~~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~ 253 (329)
+|+|+||+++|++.+||+. .|+++||+|||.++++++.++..|+....+ ...|+++|+.++ ++...|+++++
T Consensus 273 vpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~ 352 (441)
T PRK02991 273 LPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMER 352 (441)
T ss_pred EEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHH
Confidence 9999999999999999997 688999999999999999999999754332 256899999986 67778999999
Q ss_pred cCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccc----cccCCCCC---CCCeEEEEeCCC-CCChHHHHH
Q 020236 254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDG----FRKNPAWQ---DSKKIGIVLSGG-NVDLGVLWD 325 (329)
Q Consensus 254 ~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~----~~~~~~~~---~~~~vv~v~tgg-~~~~~~~~~ 325 (329)
++|+++.|+|+|+.++++.|++++|+++||+||+++|+++++. +.++..++ ++++||++.||| .++.+.+.+
T Consensus 353 ~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~~~~~ 432 (441)
T PRK02991 353 LLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEEEMEQ 432 (441)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999997641 11111233 579999999998 568888877
Q ss_pred hhh
Q 020236 326 SFR 328 (329)
Q Consensus 326 ~~~ 328 (329)
.+.
T Consensus 433 ~~~ 435 (441)
T PRK02991 433 YLA 435 (441)
T ss_pred HHH
Confidence 765
No 28
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=2.5e-62 Score=460.83 Aligned_cols=320 Identities=23% Similarity=0.288 Sum_probs=284.2
Q ss_pred CCCHHHHHHHHHHh--ccccCCCCCccchhhhhhcC-CeEEEEecCC-CCCCccchhhHHHHHhcCchhccC--------
Q 020236 9 AANFSSIKEAQKRI--SLYIHKTPVLSSETLNSMSG-RSLFFKCECF-QKGGAFKFRGASNAVLSLDEDQAI-------- 76 (329)
Q Consensus 9 ~~~~~~~~~~~~~~--~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~-nptGS~KdR~a~~~l~~a~~~~~~-------- 76 (329)
.++++++..+++++ .+.+++|||+++++|++.+| .+||+|+|++ |||||||||++.+.+..+..+...
T Consensus 23 ~~~~~~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~ 102 (399)
T PRK08206 23 LLSQEEAKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSF 102 (399)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCH
Confidence 47899999999999 66999999999999999999 6999999997 599999999999888776432211
Q ss_pred --------------CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHH
Q 020236 77 --------------KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKV 142 (329)
Q Consensus 77 --------------~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~ 142 (329)
.+|+++|+||||+|+|++|+.+|++|+||||+.+++.|+..|+.+||+|+.++++++++.+.++++
T Consensus 103 ~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~ 182 (399)
T PRK08206 103 EELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQE 182 (399)
T ss_pred HHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH
Confidence 159999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEeeC-----CCCC--cccccccCcchHHHHhhCCC----CCEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEE
Q 020236 143 LEETGAVLVH-----PYND--GRIISGQGTISLEFLEQVPL----LDTIIVPISGGGLISGVALAAKSIK--PAIRILAA 209 (329)
Q Consensus 143 ~~~~~~~~~~-----~~~n--~~~~~g~~t~~~Ei~~ql~~----~d~vv~~~GtGg~~~Gi~~~~k~~~--~~~~vi~v 209 (329)
+++.+++|++ ||+| ++.++||.|+++||++|++. ||+||+|+|+||+++|++.++++++ +.+++|+|
T Consensus 183 ~~~~g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~V 262 (399)
T PRK08206 183 AQENGWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV 262 (399)
T ss_pred HHHcCCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 8888999887 6765 66899999999999999974 9999999999999999999999984 47999999
Q ss_pred ecCCCchHHHHHHcCCeeecCC-CCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHH----HcCceeCc
Q 020236 210 EPIGANDAAQSKAAGRIITLLE-TNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYE----ILKVAVEP 283 (329)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~-~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~----~egi~~~p 283 (329)
||.+++++++++..|++...+. ..|+++|+.++ ++...++++++.+|+++.|+|+|+++++++|++ ++|+++||
T Consensus 263 ep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vep 342 (399)
T PRK08206 263 EPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGE 342 (399)
T ss_pred CCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecc
Confidence 9999999999999998776653 46899999765 556778888999999999999999999999996 78999999
Q ss_pred chHHHHHHHhccc-------cccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236 284 SGAIGLAAVLSDG-------FRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328 (329)
Q Consensus 284 ssa~alaa~~~~~-------~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~ 328 (329)
+||++++|++++. +.+++.+.++++||+|+|||++|++.+.+++.
T Consensus 343 sgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltgG~~d~~~~~~~~~ 394 (399)
T PRK08206 343 SGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLISTEGDTDPDRYREIVW 394 (399)
T ss_pred hHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEECCCCCCHHHHHHHhc
Confidence 9999999998651 12225566789999999999999999998774
No 29
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=5.6e-62 Score=461.84 Aligned_cols=303 Identities=22% Similarity=0.295 Sum_probs=274.9
Q ss_pred hccccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 22 ISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
+....|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+.+ .+.++|+++|+||||+|+|++|+++|+
T Consensus 83 v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~-~g~~~vv~aSsGN~g~alA~~aa~~Gl 161 (421)
T PRK07591 83 VDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARE-LGFTTVACASTGNLANSVAAHAARAGL 161 (421)
T ss_pred CcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHcCC
Confidence 445678999999999999999 599999999999999999999999998854 466889999999999999999999999
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC-C-C
Q 020236 101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP-L-L 177 (329)
Q Consensus 101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~-~ 177 (329)
+|+||+|+++++.|+.+++.+||+|+.++++++++.+.+++++++. +++++|++.||+.++|++|+++||++|++ + |
T Consensus 162 ~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ieG~~Tia~Ei~eQl~~~~p 241 (421)
T PRK07591 162 DSCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYYAEGSKTLGYEVAEQLGWRLP 241 (421)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCcccccchHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999998886 89999998899999999999999999997 4 9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHh-------CCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccC---CCcc
Q 020236 178 DTIIVPISGGGLISGVALAAKSI-------KPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAF---LGDL 246 (329)
Q Consensus 178 d~vv~~~GtGg~~~Gi~~~~k~~-------~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~---~~~~ 246 (329)
|+||+|+|+||+++|++.+|+++ .+.+|||+|||+++++++++++.|.....+ ...++++++..+ .+..
T Consensus 242 D~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~ 321 (421)
T PRK07591 242 DQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPY 321 (421)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHH
Confidence 99999999999999999999998 578999999999999999999988654332 367899998754 2345
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHH
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWD 325 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~ 325 (329)
.++.++++.+.++.|+|+|+++++++|++++|+++||+||+++|+++++ .+++.+.++++||+++|| |++|++.+.+
T Consensus 322 ~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l--~~~g~i~~~~~VV~i~tG~G~kd~~~~~~ 399 (421)
T PRK07591 322 ALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKL--VEAGKIDPDEETVVYITGNGLKTLEAVAG 399 (421)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHH--HHhCCCCCCCeEEEEeCCCccCCHHHHHH
Confidence 6788899999999999999999999999999999999999999999987 676777789999999999 9999998876
Q ss_pred hh
Q 020236 326 SF 327 (329)
Q Consensus 326 ~~ 327 (329)
.+
T Consensus 400 ~~ 401 (421)
T PRK07591 400 YV 401 (421)
T ss_pred hc
Confidence 54
No 30
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-62 Score=432.99 Aligned_cols=285 Identities=26% Similarity=0.323 Sum_probs=249.2
Q ss_pred HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHH
Q 020236 21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKL 97 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~ 97 (329)
++.+.+|+|||++++++....+++||+|+|++||+||.|||.+.+|+.+|++++. ..+||++||||+|+++|+.|+.
T Consensus 4 ~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~ 83 (300)
T COG0031 4 SILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAA 83 (300)
T ss_pred chHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHH
Confidence 4567789999999999988778999999999999999999999999999977653 4689999999999999999999
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C-HHHHHHHHHHHHHHc-C-CEeeCCCCCccc-ccccCcchHHHH
Q 020236 98 RGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--T-MHSRESVASKVLEET-G-AVLVHPYNDGRI-ISGQGTISLEFL 171 (329)
Q Consensus 98 ~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~-~~~~~~~a~~~~~~~-~-~~~~~~~~n~~~-~~g~~t~~~Ei~ 171 (329)
+|+++++|||+.+|.+|+++|+.+||+|+.++. . +..+.+++++++++. + .++++||+||.+ ..|+.++++||+
T Consensus 84 ~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~ 163 (300)
T COG0031 84 KGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIW 163 (300)
T ss_pred cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHH
Confidence 999999999999999999999999999999986 3 777888999998874 5 788889999985 567889999999
Q ss_pred hhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHH
Q 020236 172 EQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI 250 (329)
Q Consensus 172 ~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~ 250 (329)
+|++ .+|+||+++|||||++|++++||+.+|++++++|||.+++.+. .|. .+...+||+.+.-+ ...
T Consensus 164 ~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~----~G~------g~~~i~GIG~~~ip--~~~ 231 (300)
T COG0031 164 QQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLS----GGE------GPHKIEGIGAGFVP--ENL 231 (300)
T ss_pred HHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccC----CCC------CCcccCCCCCCcCC--ccc
Confidence 9998 5999999999999999999999999999999999999987432 132 23344666654212 123
Q ss_pred HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChH
Q 020236 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLG 321 (329)
Q Consensus 251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~ 321 (329)
..+.+|+++.|+|+|+++++|+|+++||+++++|||++++|++++ +++. .++++||+|+|+ |++|++
T Consensus 232 ~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~--a~~~--~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 232 DLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKL--AKEL--PAGKTIVTILPDSGERYLS 299 (300)
T ss_pred ccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHH--HHhc--CCCCeEEEEECCCcccccC
Confidence 356799999999999999999999999999999999999999998 5553 368999999998 899986
No 31
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.8e-61 Score=454.74 Aligned_cols=303 Identities=24% Similarity=0.276 Sum_probs=272.2
Q ss_pred hccccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 22 ISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
+....|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+.+ .+.++|+++|+||||+|+|++|+.+|+
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~-~g~~~vv~aSsGN~g~alA~~aa~~G~ 151 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKE-LGVKHLAMPTNGNAGAAWAAYAARAGI 151 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHH-cCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 344568999999999998888 699999999999999999999999998854 467899999999999999999999999
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CCC
Q 020236 101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLD 178 (329)
Q Consensus 101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~d 178 (329)
+|+||+|++.++.|+++++.+||+|+.++++++++.+.+++++++.+++++++++||++++|++|+++||++|++ .||
T Consensus 152 ~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~~~np~~ieG~~t~a~Ei~eQl~~~~pD 231 (394)
T PRK08197 152 RATIFMPADAPEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVSTLKEPYRIEGKKTMGLELAEQLGWRLPD 231 (394)
T ss_pred cEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCCCCccchhcHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999998888899999999999999999999999999998 399
Q ss_pred EEEEeCCCChHHHHHHHHHHHh-------CCCCEEEEEecCCCchHHHHHHcCCeee--cCCCCccccccccCC---Ccc
Q 020236 179 TIIVPISGGGLISGVALAAKSI-------KPAIRILAAEPIGANDAAQSKAAGRIIT--LLETNTVADGLRAFL---GDL 246 (329)
Q Consensus 179 ~vv~~~GtGg~~~Gi~~~~k~~-------~~~~~vi~v~~~~~~~~~~~~~~g~~~~--~~~~~t~~~gl~~~~---~~~ 246 (329)
+||+|+|+||+++|++++|+++ .+.+|+|+|||.++++++++++.|.... ....+++++|+..+. ...
T Consensus 232 ~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~ 311 (394)
T PRK08197 232 VILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFL 311 (394)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHH
Confidence 9999999999999999999997 3889999999999999999999886432 335678888887542 124
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHH
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWD 325 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~ 325 (329)
.++.++++.+..+.|+|+|+++++++|++++|+++||+||++++|++++ .+++.+.++++||+++|| |.+|++.+..
T Consensus 312 ~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l--~~~~~~~~~~~Vv~v~tG~g~k~~~~~~~ 389 (394)
T PRK08197 312 VLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQL--RESGWLKGDERVVLFNTGSGLKYPDTVPV 389 (394)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHH--HHcCCcCCCCcEEEEeCCCCcCchhhhhh
Confidence 5677788999999999999999999999999999999999999999987 666666778999999998 6789998876
Q ss_pred hh
Q 020236 326 SF 327 (329)
Q Consensus 326 ~~ 327 (329)
.+
T Consensus 390 ~~ 391 (394)
T PRK08197 390 VV 391 (394)
T ss_pred hc
Confidence 54
No 32
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.3e-60 Score=445.64 Aligned_cols=308 Identities=20% Similarity=0.240 Sum_probs=270.9
Q ss_pred CCHHHHHHHHHHhccc----------------cCCCCCccchhhhhhcC--------CeEEEEecCCCC-CCccchhhHH
Q 020236 10 ANFSSIKEAQKRISLY----------------IHKTPVLSSETLNSMSG--------RSLFFKCECFQK-GGAFKFRGAS 64 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~----------------i~~TPl~~~~~l~~~~g--------~~i~~K~E~~np-tGS~KdR~a~ 64 (329)
++++|+..+++++..+ +++|||+++++|++.+| .+||+|+|++|| |||||||++.
T Consensus 18 ~~~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~ 97 (404)
T cd06447 18 LSREDIFDAEARLKRFAPYIAKVFPETAASHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGI 97 (404)
T ss_pred CCHHHHHHHHHHHhhcchhhhhhCccccccCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHH
Confidence 6799999999999988 99999999999988765 799999999999 9999999999
Q ss_pred HHHhcC-----chhcc--------------------CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH
Q 020236 65 NAVLSL-----DEDQA--------------------IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV 119 (329)
Q Consensus 65 ~~l~~a-----~~~~~--------------------~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~ 119 (329)
+++..+ .+.+. .++||++||||||+|+|++|+.+|++|+||||+++++.|++.|+
T Consensus 98 ~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ir 177 (404)
T cd06447 98 YEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLR 177 (404)
T ss_pred HHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH
Confidence 998653 12111 24899999999999999999999999999999999999999999
Q ss_pred HcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC----C-----CCEEEEeCCCChH
Q 020236 120 RYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP----L-----LDTIIVPISGGGL 189 (329)
Q Consensus 120 ~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~----~-----~d~vv~~~GtGg~ 189 (329)
.+||+|+.++++++++.+.+++++++. +++|++|+++++.++||+|+++||++|++ + ||+||+|+|+||+
T Consensus 178 a~GAeVv~v~~~~~~a~~~a~~la~~~~~~~~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGl 257 (404)
T cd06447 178 SKGVTVVEYETDYSKAVEEGRKQAAADPMCYFVDDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGA 257 (404)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHCCCeEeCCCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHH
Confidence 999999999999999999999998886 67899998888899999999999999996 3 4589999999999
Q ss_pred HHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhhcCCcEEEe
Q 020236 190 ISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITV 261 (329)
Q Consensus 190 ~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V 261 (329)
++|++++||+. .|+++||+|||.++++++.+++.|...+.. ...|+++|+.++ ++...++++++.+|+++.|
T Consensus 258 i~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~V 337 (404)
T cd06447 258 PGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTV 337 (404)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEE
Confidence 99999999997 788999999999999898888888664432 257899999986 6677788888999999999
Q ss_pred CHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC---------CCCCCCCeEEEEeCCCCCC
Q 020236 262 EDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN---------PAWQDSKKIGIVLSGGNVD 319 (329)
Q Consensus 262 ~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~---------~~~~~~~~vv~v~tgg~~~ 319 (329)
+|+|+.+++++|++++|+++|||||++++|++++ .++ +---++.+.++..|||.+-
T Consensus 338 sd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
T cd06447 338 EDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQV--LSEAEGKRYVRLGYRMENATHIVWATGGSMV 402 (404)
T ss_pred CHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHH--HHhhhHHHhcCccccccCceEEEEccCCCCC
Confidence 9999999999999999999999999999999987 322 1111456778888888653
No 33
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=2.6e-60 Score=442.72 Aligned_cols=315 Identities=21% Similarity=0.308 Sum_probs=278.1
Q ss_pred HHHHHHHHHHhccccCCCCCccchhhhhhcC-CeEEEEecCCCC-CCccchhhHHHHHhcCchh----------------
Q 020236 12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQK-GGAFKFRGASNAVLSLDED---------------- 73 (329)
Q Consensus 12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~np-tGS~KdR~a~~~l~~a~~~---------------- 73 (329)
+.+...++.++..+ .+|||++++.|++.+| .+||+|+|++|+ +||||+|++.+.+..+..+
T Consensus 7 ~~~~~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~ 85 (376)
T TIGR01747 7 AKLALAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKN 85 (376)
T ss_pred HHHHHHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhh
Confidence 45667788888766 8999999999999999 699999999985 8999999999998876442
Q ss_pred ------ccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcC
Q 020236 74 ------QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG 147 (329)
Q Consensus 74 ------~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~ 147 (329)
.+..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++++++.+.+++++++.+
T Consensus 86 ~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~~g 165 (376)
T TIGR01747 86 DAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHG 165 (376)
T ss_pred hHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcC
Confidence 12568999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CEeeC-----CCCC--cccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhC-C-CCEEEEEecCC
Q 020236 148 AVLVH-----PYND--GRIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIK-P-AIRILAAEPIG 213 (329)
Q Consensus 148 ~~~~~-----~~~n--~~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~-~-~~~vi~v~~~~ 213 (329)
+++++ +|+| |+.++||+|+++||++|++ .||+||+|+|+||+++|++.++++.. + .+++|+|||.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g 245 (376)
T TIGR01747 166 WVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK 245 (376)
T ss_pred cEEeccccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 88887 4665 6679999999999999996 69999999999999999999998765 3 36999999999
Q ss_pred CchHHHHHHc--CCeeecC-CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHc----CceeCcch
Q 020236 214 ANDAAQSKAA--GRIITLL-ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEIL----KVAVEPSG 285 (329)
Q Consensus 214 ~~~~~~~~~~--g~~~~~~-~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~e----gi~~~pss 285 (329)
++++++++.. |++.+.+ ...|+++|+.++ ++...|+++++..+.++.|+|+|+.+|+++|++.. ++++||++
T Consensus 246 a~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epag 325 (376)
T TIGR01747 246 ADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESG 325 (376)
T ss_pred CCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCch
Confidence 9999999977 8887776 368999999986 67789999999999999999999999999999855 59999999
Q ss_pred HHHHHHHhcc-------ccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236 286 AIGLAAVLSD-------GFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 286 a~alaa~~~~-------~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~ 327 (329)
|+++|++... .+.+++.+.++++||+++||||.|++.|++++
T Consensus 326 a~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~d~~~~~~~~ 374 (376)
T TIGR01747 326 AVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTEGDTDPDHYREIV 374 (376)
T ss_pred HHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCCCCCCHHHHHHHh
Confidence 9999887732 11334456678999999999999999999986
No 34
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.7e-60 Score=449.82 Aligned_cols=300 Identities=22% Similarity=0.291 Sum_probs=268.6
Q ss_pred hccccCCCCCccchhhhhhcCC-eEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 22 ISLYIHKTPVLSSETLNSMSGR-SLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~~g~-~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
+...+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.+. +.++|+++||||||+|+|++|+.+|+
T Consensus 61 v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~-g~~~vv~aSsGN~g~alA~~aa~~G~ 139 (397)
T PRK06260 61 VSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALEL-GVKTVACASTGNTSASLAAYAARAGL 139 (397)
T ss_pred ccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHc-CCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 5567899999999999988886 999999999999999999999999988554 56899999999999999999999999
Q ss_pred CEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CC
Q 020236 101 PAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LL 177 (329)
Q Consensus 101 ~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~ 177 (329)
+|+||+|++ ++..|+.+++.+||+|+.++++++++.+.+++++++.++|+++++ ||++++||+|+++||++|++ .|
T Consensus 140 ~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~~-np~~~~G~~t~a~Ei~eQl~~~~p 218 (397)
T PRK06260 140 KCYVLLPAGKVALGKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNSI-NPFRLEGQKTIGFEIADQLGWEVP 218 (397)
T ss_pred cEEEEEeCCCccHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecCC-CchhhcchhhHHHHHHHHhCCCCC
Confidence 999999997 789999999999999999999999999999999888889999987 89999999999999999998 59
Q ss_pred CEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCee--ecCCCCccccccccC---CCcc
Q 020236 178 DTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRII--TLLETNTVADGLRAF---LGDL 246 (329)
Q Consensus 178 d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~~--~~~~~~t~~~gl~~~---~~~~ 246 (329)
|+||+|+|+||+++|++++|+++. +.+|+|+||+.+++++++++..|... +.+...|+++++..+ ..+.
T Consensus 219 d~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~~ 298 (397)
T PRK06260 219 DRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAPK 298 (397)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHHH
Confidence 999999999999999999999876 34799999999999999999988653 334577888888753 2334
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC-CCChHHHHH
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG-NVDLGVLWD 325 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg-~~~~~~~~~ 325 (329)
.++.++++.+.++.|+|+|+++++++|++++|+++||+||++++|++++ .+++.+.++++||+++||+ .+|.+.+.+
T Consensus 299 ~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l--~~~g~i~~~~~VV~i~tG~glK~~~~~~~ 376 (397)
T PRK06260 299 ALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKL--VEEGVIDKDERVVCITTGHLLKDPDAAIK 376 (397)
T ss_pred HHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHH--HHcCCCCCCCeEEEEeCCCccCchHHHHh
Confidence 5667788889999999999999999999999999999999999999987 6677677889999999995 568887753
No 35
>PLN02565 cysteine synthase
Probab=100.00 E-value=7.2e-61 Score=439.22 Aligned_cols=290 Identities=20% Similarity=0.253 Sum_probs=248.2
Q ss_pred HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHH
Q 020236 19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLA 94 (329)
Q Consensus 19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~ 94 (329)
.+++.+.+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.+++. .+.||++||||||.|+|++
T Consensus 6 ~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~ 85 (322)
T PLN02565 6 AKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFM 85 (322)
T ss_pred hhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHH
Confidence 345777899999999988765556799999999999999999999999998866543 2459999999999999999
Q ss_pred HHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEeeCCCCCccc-ccccCcchHHH
Q 020236 95 AKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEET-GAVLVHPYNDGRI-ISGQGTISLEF 170 (329)
Q Consensus 95 a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei 170 (329)
|+.+|++|+||||+++++.|+++|+.+||+|+.++. +++++.+.+++++++. ++++++||+|+.+ ..||+|+++||
T Consensus 86 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 86 AAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986 4577788899988774 8999999999864 57899999999
Q ss_pred HhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHH
Q 020236 171 LEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP 249 (329)
Q Consensus 171 ~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~ 249 (329)
++|++ +||+||+|+||||+++|++.+||+.+|.+|||+|||.+++++. .+.+. ....+|++....+..+.
T Consensus 166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~----~g~~~-----~~~~~glg~~~~~~~~~ 236 (322)
T PLN02565 166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFIPGVLD 236 (322)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCcccc----CCCCC-----CccCCCCCCCCCCCcCC
Confidence 99997 8999999999999999999999999999999999999998762 34331 12336666531111121
Q ss_pred HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV 322 (329)
Q Consensus 250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~ 322 (329)
.+.+|+.+.|+|+|+++++++|++++|+++|||||+++++++++ ++.+. .++++||+++|| |.+|+++
T Consensus 237 --~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~--a~~~~-~~~~~vV~v~~d~G~ky~~~ 305 (322)
T PLN02565 237 --VDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKI--AKRPE-NAGKLIVVIFPSFGERYLSS 305 (322)
T ss_pred --HhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHH--HHhcC-CCCCeEEEEECCCccccCCc
Confidence 25789999999999999999999999999999999999999988 55443 467899999998 7899886
No 36
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=2e-60 Score=439.48 Aligned_cols=295 Identities=27% Similarity=0.371 Sum_probs=264.5
Q ss_pred HhccccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236 21 RISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
++...+++|||+++++|++..| .+||+|+|++|||||||||++.+++.++.++ +.++|+++|+||||+|+|++|+.+|
T Consensus 15 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~-g~~~vv~~SsGN~g~alA~~a~~~G 93 (324)
T cd01563 15 IVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKEL-GVKAVACASTGNTSASLAAYAARAG 93 (324)
T ss_pred cccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHc-CCCEEEEeCCCHHHHHHHHHHHHcC
Confidence 4667889999999999998777 8999999999999999999999999998654 5778999999999999999999999
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CC
Q 020236 100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LL 177 (329)
Q Consensus 100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~ 177 (329)
++|++|+|++.++.|+++|+.+||+|+.++++++++.+.+++++++. ++|++||+|+.+++||.++++||++|++ .|
T Consensus 94 ~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~~~~~-~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~ 172 (324)
T cd01563 94 IKCVVFLPAGKALGKLAQALAYGATVLAVEGNFDDALRLVRELAEEN-WIYLSNSLNPYRLEGQKTIAFEIAEQLGWEVP 172 (324)
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHhc-CeeccCCCCcceecchhhhHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999998877 8999999999999999999999999997 69
Q ss_pred CEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCe--eecCCCCccccccccCC---Ccc
Q 020236 178 DTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRI--ITLLETNTVADGLRAFL---GDL 246 (329)
Q Consensus 178 d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~--~~~~~~~t~~~gl~~~~---~~~ 246 (329)
|+||+|+||||+++|++.+||... +.++||+|||.++++++++++.|.. ...+...++++|++.+. .+.
T Consensus 173 d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~ 252 (324)
T cd01563 173 DYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPK 252 (324)
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHH
Confidence 999999999999999999999875 5799999999999999999988854 44556788889887642 233
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCC
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVD 319 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~ 319 (329)
.++.++++.++++.|+|+|++++++++++++|+++||+||+++++++++ .+++.+.++++||+++|| |.+|
T Consensus 253 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l--~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 253 ALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKL--REEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHH--HHcCCCCCCCcEEEEeCCCccCC
Confidence 4567778889999999999999999999999999999999999999987 555545578899999999 5543
No 37
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=7e-60 Score=444.18 Aligned_cols=320 Identities=18% Similarity=0.173 Sum_probs=277.6
Q ss_pred CCCCCCCCHHHHHHHHHHhcc----------------ccCCCCCccchhhhhhc--------CCeEEEEecCCCC-CCcc
Q 020236 4 NGEKYAANFSSIKEAQKRISL----------------YIHKTPVLSSETLNSMS--------GRSLFFKCECFQK-GGAF 58 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~----------------~i~~TPl~~~~~l~~~~--------g~~i~~K~E~~np-tGS~ 58 (329)
..+...++++|+.++..++.. .+++|||++++++++.+ +.+||+|+|++|| ||||
T Consensus 30 ~~~~~~~~~~~i~~a~~~~~~~~~~~~~~fp~~~~~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSf 109 (431)
T TIGR02035 30 YLPKVGLKAQEVAEAEARLQRFAPYIAKVFPETAATGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSI 109 (431)
T ss_pred ccccCCCCHHHHHHHHHHHHhhhhhHHHhCccccccCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCc
Confidence 345667999999999999988 89999999999998854 4799999999999 9999
Q ss_pred chhhHHHHHhcC-----chhcc--------------------CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHH
Q 020236 59 KFRGASNAVLSL-----DEDQA--------------------IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC 113 (329)
Q Consensus 59 KdR~a~~~l~~a-----~~~~~--------------------~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~ 113 (329)
|||++.+++..+ .+.+. .++|+++||||||.|+|++|+.+|++|+||||+++++.
T Consensus 110 KdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~ 189 (431)
T TIGR02035 110 KARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQW 189 (431)
T ss_pred HHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 999999998652 22221 25799999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC---------CCCEEEEe
Q 020236 114 KVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP---------LLDTIIVP 183 (329)
Q Consensus 114 ~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~---------~~d~vv~~ 183 (329)
|++.++.+||+|+.++++++++.+.+++++++. +++|+++.+.++..+||+|+++||++|++ .||+|++|
T Consensus 190 K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~~~~~d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp 269 (431)
T TIGR02035 190 KKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPMCYFVDDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLP 269 (431)
T ss_pred HHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEECCCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEE
Confidence 999999999999999999999999999998875 57788886555678999999999999994 36799999
Q ss_pred CCCChHHHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhhcC
Q 020236 184 ISGGGLISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRDLV 255 (329)
Q Consensus 184 ~GtGg~~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~~~ 255 (329)
+|+||+++|++.+||+. +|+++||+|||.+++++..++..|.....+ ...|+++||+++ ++...++++++++
T Consensus 270 ~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~v 349 (431)
T TIGR02035 270 CGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLL 349 (431)
T ss_pred eCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhC
Confidence 99999999999999997 789999999999999999999888643322 347899999986 6777888888899
Q ss_pred CcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC--------C---CCCCCCeEEEEeCCCCCChHHHH
Q 020236 256 DDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN--------P---AWQDSKKIGIVLSGGNVDLGVLW 324 (329)
Q Consensus 256 ~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~--------~---~~~~~~~vv~v~tgg~~~~~~~~ 324 (329)
|+++.|+|+|+.+++++|++++|+++|||||++++++.++ .+. + .+.++.++++..|||.+-++..+
T Consensus 350 d~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~p~~~~ 427 (431)
T TIGR02035 350 SGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRL--LKYEDSYRYIEGRIGKNLNNATHVVWATGGGMVPEEEM 427 (431)
T ss_pred CeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHH--HhhhhhHHHHcCccccccCCCeEEEEecCCCCCCHHHH
Confidence 9999999999999999999999999999999999998875 222 1 11247899999999877666654
Q ss_pred H
Q 020236 325 D 325 (329)
Q Consensus 325 ~ 325 (329)
+
T Consensus 428 ~ 428 (431)
T TIGR02035 428 E 428 (431)
T ss_pred H
Confidence 4
No 38
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.6e-60 Score=444.66 Aligned_cols=299 Identities=21% Similarity=0.254 Sum_probs=249.8
Q ss_pred HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236 19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA 95 (329)
Q Consensus 19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a 95 (329)
+.++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+++. ...|+++||||||+++|++|
T Consensus 44 ~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~a 123 (423)
T PLN02356 44 RNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVA 123 (423)
T ss_pred hhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHH
Confidence 455677899999999999988888999999999999999999999999998866443 23577799999999999999
Q ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC-------CH-HHHH---HHHHHHHHH-------------------
Q 020236 96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA-------TM-HSRE---SVASKVLEE------------------- 145 (329)
Q Consensus 96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~-------~~-~~~~---~~a~~~~~~------------------- 145 (329)
+.+|++|+||||+++++.|+++|+.+||+|+.+++ ++ ..++ +.+.+++++
T Consensus 124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~ 203 (423)
T PLN02356 124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI 203 (423)
T ss_pred HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 99999999999999999999999999999999964 12 1111 223444332
Q ss_pred --------------cCCEeeCCCCCccc-ccccCcchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236 146 --------------TGAVLVHPYNDGRI-ISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA 209 (329)
Q Consensus 146 --------------~~~~~~~~~~n~~~-~~g~~t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v 209 (329)
++++|+|||+|+.+ ..|+..+|+||++|++ ++|+||+|+||||+++|++++||+.+|++||++|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV 283 (423)
T PLN02356 204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI 283 (423)
T ss_pred ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 46789999999885 3343446999999997 8999999999999999999999999999999999
Q ss_pred ecCCCc---------hHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCce
Q 020236 210 EPIGAN---------DAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVA 280 (329)
Q Consensus 210 ~~~~~~---------~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~ 280 (329)
||.++. .++++++.|+....+ .+++++|++.+ ...+......+|+++.|+|+|++++++++++++|++
T Consensus 284 ep~~s~~~~~~~~~~~~~~s~~~G~~~~~~-~~tia~Gig~~--~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~ 360 (423)
T PLN02356 284 DPPGSGLFNKVTRGVMYTREEAEGRRLKNP-FDTITEGIGIN--RLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLF 360 (423)
T ss_pred ecCCCccccccccchhhhhhhhcCCccCCC-CCeecCcCcCC--CCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCee
Confidence 999876 455667777665443 36899999864 233344567899999999999999999999999999
Q ss_pred eCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHH
Q 020236 281 VEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLW 324 (329)
Q Consensus 281 ~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~ 324 (329)
+|||||++++|++++ ++. +.++++||+|+|| |.+|+++++
T Consensus 361 vg~Ssaa~laaa~~l--a~~--~~~g~~VV~Il~d~G~kyl~~~~ 401 (423)
T PLN02356 361 VGSSSAMNCVGAVRV--AQS--LGPGHTIVTILCDSGMRHLSKFH 401 (423)
T ss_pred EeECHHHHHHHHHHH--HHH--hCCCCeEEEEECCCCcchhhhhc
Confidence 999999999999986 433 3468899999998 899998864
No 39
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=4.6e-60 Score=439.39 Aligned_cols=296 Identities=27% Similarity=0.344 Sum_probs=255.7
Q ss_pred HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
++...+|+|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.++ +.++||++|+||||+|+|++|+.+|+
T Consensus 21 ~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~-g~~~vV~aSsGN~G~AlA~~aa~~G~ 99 (351)
T PRK06352 21 MISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEE-GAEAVICASTGNTSAAAAAYATRAGL 99 (351)
T ss_pred ccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHC-CCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 35567899999999999988889999999999999999999999999998654 56789999999999999999999999
Q ss_pred CEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCC
Q 020236 101 PAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLD 178 (329)
Q Consensus 101 ~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d 178 (329)
+|+||||++ .++.|+++|+.+||+|+.++++++++.+.+++++++.++++.++ .||.+++||.++++||++|++ .||
T Consensus 100 ~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~n~~~~~G~~t~~~EI~~Q~~~~~D 178 (351)
T PRK06352 100 KAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNS-VNPYRLEGQKTAAFEICEQLGSAPD 178 (351)
T ss_pred cEEEEEeCCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccccC-CCccceeeHHHHHHHHHHHcCCCCC
Confidence 999999998 58999999999999999999999999999999988877777664 589999999999999999998 799
Q ss_pred EEEEeCCCChHHHHHHHHHHHhCCC-----CEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHH--
Q 020236 179 TIIVPISGGGLISGVALAAKSIKPA-----IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV-- 251 (329)
Q Consensus 179 ~vv~~~GtGg~~~Gi~~~~k~~~~~-----~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~-- 251 (329)
+||+|+|+||+++|++++||+++|. ++||+|||.+++++. .|++. +...++++++..+. +..|...
T Consensus 179 ~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~----~g~~~--~~~~~ia~~l~~~~-~~~~~~~~~ 251 (351)
T PRK06352 179 VLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIV----QGKPI--DNPETIATAIRIGN-PASWGLAEA 251 (351)
T ss_pred EEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHH----hCCCc--CCCCcceeEEEeCC-CCcHHHHHH
Confidence 9999999999999999999998876 899999999997643 44443 23557777776432 2234332
Q ss_pred --hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhh
Q 020236 252 --RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSF 327 (329)
Q Consensus 252 --~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~ 327 (329)
+...+.++.|+|+|++++++++++++|+++||+||+++||++++ .+++.+.++++||+++|| |++|++++....
T Consensus 252 ~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~--~~~~~~~~~~~Vv~v~tg~G~~~~~~~~~~~ 328 (351)
T PRK06352 252 ARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQH--VANGTIKKGETVVCVFTGNGLKDPDTAMSVH 328 (351)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHH--HHcCCCCCCCcEEEEeCCCCcCChHHHHhhc
Confidence 33445699999999999999999999999999999999999986 444445578899999999 899999986543
No 40
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=3.3e-60 Score=430.86 Aligned_cols=281 Identities=19% Similarity=0.233 Sum_probs=243.4
Q ss_pred HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236 19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA 95 (329)
Q Consensus 19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a 95 (329)
++++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+++. .++|+++|+||||+|+|++|
T Consensus 3 ~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a 82 (296)
T PRK11761 3 YPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIA 82 (296)
T ss_pred cccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHH
Confidence 456777899999999999988788999999999999999999999999999866543 25699999999999999999
Q ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHcCCEeeCCCCCcccc-cccCcchHHHHh
Q 020236 96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEETGAVLVHPYNDGRII-SGQGTISLEFLE 172 (329)
Q Consensus 96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~ 172 (329)
+.+|++|+||||+..++.|+++|+.+||+|+.++. +++++.+.+++++++.+++|++||+|+.++ .||.|+++||++
T Consensus 83 ~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~e 162 (296)
T PRK11761 83 AIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWR 162 (296)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHH
Confidence 99999999999999999999999999999999996 688888899999888889999999998854 568999999999
Q ss_pred hCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHH
Q 020236 173 QVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV 251 (329)
Q Consensus 173 ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~ 251 (329)
|++ ++|+||+|+||||+++|++.+||+.+|++|||+|||.+++++. |- .+......+.. ..
T Consensus 163 q~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~-----g~-----------~~~~~~~~~~~--~~ 224 (296)
T PRK11761 163 QTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIP-----GI-----------RRWPEEYLPKI--FD 224 (296)
T ss_pred hcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCc-----CC-----------CCCCCCcCCcc--cC
Confidence 997 7999999999999999999999999999999999999886541 10 00000000111 12
Q ss_pred hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236 252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV 322 (329)
Q Consensus 252 ~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~ 322 (329)
...+|+++.|+|+|+++++++|++++|+++|||||+++++++++ ++. .++++||+|+|| |.+|+++
T Consensus 225 ~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~--~~~---~~~~~vV~v~~d~g~ky~~~ 291 (296)
T PRK11761 225 ASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRI--ARE---NPNAVIVAIICDRGDRYLST 291 (296)
T ss_pred hhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHH--HHH---CCCCeEEEEECCCCcccCCh
Confidence 45789999999999999999999999999999999999999986 433 256899999998 8999986
No 41
>PLN03013 cysteine synthase
Probab=100.00 E-value=8.6e-60 Score=439.84 Aligned_cols=293 Identities=19% Similarity=0.238 Sum_probs=251.6
Q ss_pred HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHH
Q 020236 18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSL 93 (329)
Q Consensus 18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~ 93 (329)
.++++.+.+++|||++++.+++..+.+||+|+|++|||||||||++.+++..+++++. ..+||++||||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 5677888999999999999987777899999999999999999999999999866543 145999999999999999
Q ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHH-cCCEeeCCCCCcccc-cccCcchHH
Q 020236 94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEE-TGAVLVHPYNDGRII-SGQGTISLE 169 (329)
Q Consensus 94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~-~g~~t~~~E 169 (329)
+|+.+|++++||||+++++.|+++|+.+||+|+.+++. ++++.+.+++++++ ++++|++||+||.++ .||+|+++|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875 55778889998877 479999999999976 599999999
Q ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccH
Q 020236 170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTW 248 (329)
Q Consensus 170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~ 248 (329)
|++|++ +||+||+|+||||+++|+++++|+.+|+++||+|||.+++.+ ..|.+. .+..+|++.+ ...+
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l----~~g~~~-----~~~i~Glg~~--~ip~ 341 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDIL----SGGKPG-----PHKIQGIGAG--FIPK 341 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchh----hCCCCC-----CcccCcccCC--cCCH
Confidence 999997 899999999999999999999999999999999999999765 234331 2334566543 2233
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeC--CCCCChHHHH
Q 020236 249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLS--GGNVDLGVLW 324 (329)
Q Consensus 249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~t--gg~~~~~~~~ 324 (329)
.+...++|+++.|+|+|+++++++|++++|+++||+||++++|++++ ++... .++++||++++ ||++|.++..
T Consensus 342 ~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkl--a~~~~-~~g~~IVv~i~~d~g~~Y~~~~~ 416 (429)
T PLN03013 342 NLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKV--AKRPE-NAGKLIAVSLFASGRDIYTPRCS 416 (429)
T ss_pred hHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHH--hhhcc-CCCCEEEEEEcCCCchhchhhhh
Confidence 44567899999999999999999999999999999999999999987 44322 24667656553 5899999863
No 42
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=3.3e-60 Score=438.42 Aligned_cols=297 Identities=21% Similarity=0.305 Sum_probs=252.4
Q ss_pred HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236 19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA 95 (329)
Q Consensus 19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a 95 (329)
++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++. ..+|+++|+||||+|+|++|
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a 83 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVA 83 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 456777899999999999998889999999999999999999999999998866543 25699999999999999999
Q ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-HH-------HHHHHHHHHHHH--cCCEeeCCCCCccc-ccccC
Q 020236 96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-MH-------SRESVASKVLEE--TGAVLVHPYNDGRI-ISGQG 164 (329)
Q Consensus 96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~-------~~~~~a~~~~~~--~~~~~~~~~~n~~~-~~g~~ 164 (329)
+++|++|+||+|+..++.|+++++.+||+|+.++++ ++ .+.+.++++.++ .+++|++||+||.+ ..||.
T Consensus 84 ~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (330)
T PRK10717 84 AARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYE 163 (330)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHH
Confidence 999999999999999999999999999999999874 22 223344444443 47899999999985 57899
Q ss_pred cchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCC
Q 020236 165 TISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL 243 (329)
Q Consensus 165 t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~ 243 (329)
++++||++|++ +||+||+|+||||+++|++.+||+.+|+++||+|||.++ +++.++..|+.. ....++++|++.+.
T Consensus 164 t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~-~~~~~~~~g~~~--~~~~~~~~gl~~~~ 240 (330)
T PRK10717 164 TTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGS-ALYSYYKTGELK--AEGSSITEGIGQGR 240 (330)
T ss_pred hHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCC-ccccccccCCcC--CCCCcccCcCCCCc
Confidence 99999999998 799999999999999999999999999999999999998 566677666543 24557888887642
Q ss_pred CcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236 244 GDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV 322 (329)
Q Consensus 244 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~ 322 (329)
.. +......+++++.|+|+|++++++++++++|+++||+||+++++++++ ++. +.++++||+|+|| |.+|++.
T Consensus 241 ~~--~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l--~~~--~~~~~~Vv~v~~g~g~ky~~~ 314 (330)
T PRK10717 241 IT--ANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRL--ARE--LGPGHTIVTILCDSGERYQSK 314 (330)
T ss_pred CC--cccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHH--HHh--cCCCCEEEEEECCCchhhccc
Confidence 12 222344678999999999999999999999999999999999999987 433 2467899999998 7899887
Q ss_pred HH
Q 020236 323 LW 324 (329)
Q Consensus 323 ~~ 324 (329)
+.
T Consensus 315 ~~ 316 (330)
T PRK10717 315 LF 316 (330)
T ss_pred cc
Confidence 64
No 43
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=5.7e-59 Score=436.48 Aligned_cols=315 Identities=22% Similarity=0.305 Sum_probs=270.2
Q ss_pred HHHHHHHHHHhccccCCCCCccchhhhhhcC-CeEEEEecCCC-CCCccchhhHHHHHhcCch-----------------
Q 020236 12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQ-KGGAFKFRGASNAVLSLDE----------------- 72 (329)
Q Consensus 12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~n-ptGS~KdR~a~~~l~~a~~----------------- 72 (329)
+.++.+++.++. .+.+|||++++.|++.+| .+||+|+|++| ||||||+|++.+.+..+.+
T Consensus 26 ~~~~~~~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~ 104 (396)
T TIGR03528 26 AEKVRAFHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKS 104 (396)
T ss_pred HHHHHHHHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhh
Confidence 344445566654 558999999999999999 69999999988 5999999999999886422
Q ss_pred hc-----cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcC
Q 020236 73 DQ-----AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG 147 (329)
Q Consensus 73 ~~-----~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~ 147 (329)
+. ...+||++|+||||+|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++.+
T Consensus 105 ~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~~g 184 (396)
T TIGR03528 105 NEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLNYDDAVRLAWKMAQENG 184 (396)
T ss_pred HHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcC
Confidence 10 1238999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CEeeC-----CCCC--cccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHh-CCC-CEEEEEecCC
Q 020236 148 AVLVH-----PYND--GRIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSI-KPA-IRILAAEPIG 213 (329)
Q Consensus 148 ~~~~~-----~~~n--~~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~-~~~-~~vi~v~~~~ 213 (329)
++|++ +|+| ++.++||+|+++||++|++ .||+||+|+|+||+++|++.++++. .+. ++||+|||.+
T Consensus 185 ~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~ 264 (396)
T TIGR03528 185 WVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDA 264 (396)
T ss_pred cEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCC
Confidence 88886 5765 5568999999999999997 6999999999999999999989654 344 5999999999
Q ss_pred CchHHHHHHc--CCeeecC-CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHH----HcCceeCcch
Q 020236 214 ANDAAQSKAA--GRIITLL-ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYE----ILKVAVEPSG 285 (329)
Q Consensus 214 ~~~~~~~~~~--g~~~~~~-~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~----~egi~~~pss 285 (329)
++++++++.. +++...+ ...|+++|+.++ ++...|+++++++|+++.|+|+|+.++++++++ ++++++||++
T Consensus 265 a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsg 344 (396)
T TIGR03528 265 ADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESG 344 (396)
T ss_pred CchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcH
Confidence 9999999987 7777776 578999999875 666778899999999999999999999999998 6799999999
Q ss_pred HHHHHHH---hcc----ccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236 286 AIGLAAV---LSD----GFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 286 a~alaa~---~~~----~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~ 327 (329)
|+++|++ +.. .+.+++.+.++++||+|+||||.|++.|++++
T Consensus 345 a~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~tggn~d~~~~~~~~ 393 (396)
T TIGR03528 345 AVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLISTEGDTDPDNYRKIV 393 (396)
T ss_pred HHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEECCCCCCHHHHHHHh
Confidence 9999544 431 01333445568999999999999999999886
No 44
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=3.1e-59 Score=435.33 Aligned_cols=297 Identities=23% Similarity=0.312 Sum_probs=257.8
Q ss_pred hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236 22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP 101 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~ 101 (329)
+...+|+|||+++++|+...|.+||+|+|++|||||||||++.+++..+.++ +.++||++||||||+++|++|+.+|++
T Consensus 25 ~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~-g~~~iv~aSsGN~g~alA~~a~~~G~~ 103 (353)
T PRK07409 25 VTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEE-GAKAVICASTGNTSASAAAYAARAGLK 103 (353)
T ss_pred ccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHC-CCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 4557899999999999988889999999999999999999999999998654 567999999999999999999999999
Q ss_pred EEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCCE
Q 020236 102 AYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDT 179 (329)
Q Consensus 102 ~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~ 179 (329)
|+||||++ .++.|+++++.+||+|+.++++++++.+.++++.++.+++++++ .||.+++||.|+++||++|++ .||+
T Consensus 104 ~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~~~~~~~~~~~-~n~~~~~g~~t~~~EI~~q~~~~~d~ 182 (353)
T PRK07409 104 AFVLIPEGKIALGKLAQAVMYGAEIIQIDGNFDDALEIVRELAEKYPVTLVNS-VNPYRIEGQKTAAFEIVDALGDAPDY 182 (353)
T ss_pred EEEEEcCCCCchhhHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCceecCC-CCchhhhhHHHHHHHHHHHhCCCCCE
Confidence 99999998 68899999999999999999999999999999988877777776 589999999999999999997 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc---ccHHH
Q 020236 180 IIVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD---LTWPI 250 (329)
Q Consensus 180 vv~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~---~~~~~ 250 (329)
||+|+||||+++|++.+|+...+ .+|+|+|||.++++++ .+... +...++++++..+.+. ..+..
T Consensus 183 iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~----~g~~~--~~~~ti~~~l~~~~~~~~~~~~~~ 256 (353)
T PRK07409 183 HCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIV----RGEPV--KNPETIATAIRIGNPASWDKAVAA 256 (353)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHh----hCCcC--CCCcceeeeeecCCCCCHHHHHHH
Confidence 99999999999999999998743 4899999999987764 34332 2346788887654221 12344
Q ss_pred HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
++++.+..+.|+|+|++++++++++++|+++||+||++++++++. .+++.+.++++||+++|| |++|++++.+.+.
T Consensus 257 ~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~--~~~~~~~~~~~VV~i~tg~g~k~~~~~~~~~~ 333 (353)
T PRK07409 257 RDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKA--IRAGKIPEGSTVVCTLTGNGLKDPDTAIKQAD 333 (353)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHH--HHcCCCCCCCcEEEEecCccccchHHHHhhcc
Confidence 567788999999999999999999999999999999999999876 455445578899999999 9999999876543
No 45
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=6.5e-59 Score=428.21 Aligned_cols=289 Identities=21% Similarity=0.309 Sum_probs=253.3
Q ss_pred cccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCE
Q 020236 24 LYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPA 102 (329)
Q Consensus 24 ~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~ 102 (329)
..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.++.+ .+.++|+++|+||||+|+|++|+.+|++|
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~-~g~~~lv~aSsGN~g~alA~~aa~~G~~~ 89 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMR-LGYSGITVGTCGNYGASIAYFARLYGLKA 89 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHH-cCCCEEEEeCCcHHHHHHHHHHHHcCCcE
Confidence 4589999999999998888 699999999999999999999999999855 46789999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC-Cc-ccccccCcchHHHHhhCC-CCCE
Q 020236 103 YIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN-DG-RIISGQGTISLEFLEQVP-LLDT 179 (329)
Q Consensus 103 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-n~-~~~~g~~t~~~Ei~~ql~-~~d~ 179 (329)
++|||+..++.|+++|+.+||+|+.++++++++.+.++++++++++|++++++ |+ ..++||.++++||++|++ .||+
T Consensus 90 ~ivvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~ 169 (319)
T PRK06381 90 VIFIPRSYSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDA 169 (319)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHHHHcCcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCE
Confidence 99999999999999999999999999999999999999998888899999985 76 589999999999999998 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHh------CCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccc-cccC-------CC
Q 020236 180 IIVPISGGGLISGVALAAKSI------KPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADG-LRAF-------LG 244 (329)
Q Consensus 180 vv~~~GtGg~~~Gi~~~~k~~------~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~g-l~~~-------~~ 244 (329)
||+|+||||+++|++++|++. .|.+++++|||.+++++..++..|...... ...++.+. +..+ .+
T Consensus 170 vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 249 (319)
T PRK06381 170 VAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDG 249 (319)
T ss_pred EEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCH
Confidence 999999999999999999998 789999999999999999999888654222 11233321 1111 11
Q ss_pred cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCC
Q 020236 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN 317 (329)
Q Consensus 245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~ 317 (329)
...++.+.++.+..+.|+|+|+++++++|++++||++||++|+++|+++++ .+++.+ +++||+++|||-
T Consensus 250 ~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~--~~~~~~--~~~vv~i~tGg~ 318 (319)
T PRK06381 250 DNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKY--LKKNGV--NDNVVAVITGRR 318 (319)
T ss_pred HHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHH--HHcCCC--CCcEEEEecCCC
Confidence 234667888999999999999999999999999999999999999999987 555543 489999999984
No 46
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.8e-59 Score=428.06 Aligned_cols=287 Identities=22% Similarity=0.250 Sum_probs=246.9
Q ss_pred ccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc-C--CeEEEECCchHHHHHHHHHHHcC
Q 020236 23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA-I--KGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 23 ~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~-~--~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
.+++++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+++. . ++|+++|+||||+|+|++|+.+|
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G 81 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKG 81 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcC
Confidence 46789999999999998888999999999999999999999999998865543 2 56999999999999999999999
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEeeCCCCCccc-ccccCcchHHHHhhCC
Q 020236 100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEET-GAVLVHPYNDGRI-ISGQGTISLEFLEQVP 175 (329)
Q Consensus 100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~ql~ 175 (329)
++|+||||+..++.|+++|+.+||+|+.++++ ++++.+.+++++++. ++++++||+|+.+ ..||+++++||++|++
T Consensus 82 ~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~ 161 (299)
T TIGR01136 82 YKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTD 161 (299)
T ss_pred CcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999986 588888999998885 7889999999875 7889999999999998
Q ss_pred -CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhc
Q 020236 176 -LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDL 254 (329)
Q Consensus 176 -~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~ 254 (329)
+||+||+|+|+||+++|++.+|+..+|.+||++|||.++++++.+ ..... .. .++... ...+.+..++
T Consensus 162 ~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~----~~~~~-~~----~~i~~~--~~~~~~~~~~ 230 (299)
T TIGR01136 162 GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGG----EPGPH-KI----QGIGAG--FIPKILDLSL 230 (299)
T ss_pred CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCC----CCCCc-cC----CCCCCC--CCCccCChhh
Confidence 799999999999999999999999999999999999999877543 11100 11 233322 1122233567
Q ss_pred CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236 255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL 323 (329)
Q Consensus 255 ~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~ 323 (329)
+|+++.|+|+|+++++++|++++|+++||+||+++++++++ .++. ..++++||+++|| |.+|++++
T Consensus 231 ~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~--~~~~-~~~~~~vv~i~~d~g~ky~~~~ 297 (299)
T TIGR01136 231 IDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKL--AKRL-ENADKVIVAILPDTGERYLSTG 297 (299)
T ss_pred CCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHH--HHhc-CCCCCEEEEEECCCCccccCcc
Confidence 89999999999999999999999999999999999999987 4442 2357899999998 89998863
No 47
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=5.3e-59 Score=428.89 Aligned_cols=274 Identities=24% Similarity=0.314 Sum_probs=241.4
Q ss_pred hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236 22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP 101 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~ 101 (329)
+....|+|||++.+ +||+|+|++|||||||||++.++++.+.+ .+.++|+++||||+|.|+|++|+.+|++
T Consensus 52 vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~-~g~~~vv~aSsGN~g~slA~~aa~~G~~ 122 (338)
T PRK06450 52 ISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAE-KGIKQISEDSSGNAGASIAAYGAAAGIE 122 (338)
T ss_pred CCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 45678999999865 69999999999999999999999998855 4678999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CCCE
Q 020236 102 AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLDT 179 (329)
Q Consensus 102 ~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~d~ 179 (329)
|+||||+++++.|+++++.+||+|+.++++++++.+. +++.+++|++++.||++++|++|+++||++|++ .||+
T Consensus 123 ~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~~~~~~~~----a~~~g~~~~~~~~np~~ieG~kTia~EI~eql~~~~pD~ 198 (338)
T PRK06450 123 VKIFVPETASGGKLKQIESYGAEVVRVRGSREDVAKA----AENSGYYYASHVLQPQFRDGIRTLAYEIAKDLDWKIPNY 198 (338)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHH----HHhcCeEeccCCCCccHHHHHHHHHHHHHHHcCCCCCCE
Confidence 9999999999999999999999999999998876554 455678899999999999999999999999997 5999
Q ss_pred EEEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCcccHHH
Q 020236 180 IIVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGDLTWPI 250 (329)
Q Consensus 180 vv~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~~~~~~ 250 (329)
||+|+|+||+++|++++|+++.+ .+|+|+|||.++++++.++..+...+.+...|+++++..+ .....++.
T Consensus 199 vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p~~~~~~~~~ 278 (338)
T PRK06450 199 VFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKA 278 (338)
T ss_pred EEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCCCCHHHHHHH
Confidence 99999999999999999999864 4799999999999999999865544445678999998754 22345667
Q ss_pred HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCC
Q 020236 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVD 319 (329)
Q Consensus 251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~ 319 (329)
+++. +..+.|+|+|+++++++|++ +|+++||+||+++||++++ ++++||+++|| |.++
T Consensus 279 i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l---------~~~~vv~vltG~glK~ 337 (338)
T PRK06450 279 LSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY---------SVNDSVLVLTGSGLKV 337 (338)
T ss_pred HHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC---------CCCCEEEEeCCCCccC
Confidence 7776 89999999999999999986 6999999999999999875 34789999999 5554
No 48
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.6e-58 Score=429.63 Aligned_cols=294 Identities=25% Similarity=0.314 Sum_probs=253.6
Q ss_pred HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
++...+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++ +.++||++||||||+|+|++|+.+|+
T Consensus 21 ~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~-g~~~vV~aSsGN~G~alA~~aa~~G~ 99 (352)
T PRK06721 21 DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEE-GSEAIICASTGNTSASAAAYAARLGM 99 (352)
T ss_pred ccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHC-CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 34556899999999999988889999999999999999999999999998544 56899999999999999999999999
Q ss_pred CEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCC
Q 020236 101 PAYIVIPKNA-PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLD 178 (329)
Q Consensus 101 ~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d 178 (329)
+|++|||+.. ++.|+++|+.+||+|+.++++++++.+.+++++++.++++.+ +.||.+++||.|+++||++|++ .||
T Consensus 100 ~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~n~~~~~G~~t~~~Ei~eq~~~~~D 178 (352)
T PRK06721 100 KCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVN-SVNPYRIEGQKTAAFEICDQLQRAPD 178 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceecc-CCCchhhhhhhhHHHHHHHHhCCCCC
Confidence 9999999974 789999999999999999999999999999998888887776 4689999999999999999998 799
Q ss_pred EEEEeCCCChHHHHHH----HHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC-c--ccHHH
Q 020236 179 TIIVPISGGGLISGVA----LAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG-D--LTWPI 250 (329)
Q Consensus 179 ~vv~~~GtGg~~~Gi~----~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~-~--~~~~~ 250 (329)
+||+|+||||+++|++ +++|..+ |.++||+|||.+++++. .+.. .+..+++++++..+.+ . ..+..
T Consensus 179 ~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~----~g~~--~~~~~tia~~l~~~~~~~~~~~~~~ 252 (352)
T PRK06721 179 VLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIV----KGHV--IDEPETIATAIRIGNPASWSYAVEA 252 (352)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHh----hCCc--CCCCCceeeccccCCCCCHHHHHHH
Confidence 9999999999999854 4455554 89999999999998754 3332 2345677788775421 1 22344
Q ss_pred HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHH
Q 020236 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLW 324 (329)
Q Consensus 251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~ 324 (329)
++.++|.++.|+|+|++++++++++++|+++||++|+++++++++ .+++.+.++++||+++|| |.+|++.+.
T Consensus 253 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~--~~~~~~~~~~~Vv~v~~g~g~k~~~~~~ 325 (352)
T PRK06721 253 AEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKH--VQSGKIKKGETVVAVLTGNGLKDPDIAI 325 (352)
T ss_pred HHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHH--HHcCCCCCCCeEEEEeCCCCcCchHHHh
Confidence 567899999999999999999999999999999999999999987 555555678999999998 689998885
No 49
>PLN02569 threonine synthase
Probab=100.00 E-value=1.9e-58 Score=440.82 Aligned_cols=298 Identities=20% Similarity=0.207 Sum_probs=263.7
Q ss_pred hccccCCCCCccchhhhhh-cC-CeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHHH
Q 020236 22 ISLYIHKTPVLSSETLNSM-SG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLAA 95 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~-~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~a 95 (329)
+....|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.+. ...|+++||||||.|+|++|
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 3456699999999999887 78 599999999999999999999999988754322 25699999999999999999
Q ss_pred HHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhC
Q 020236 96 KLRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV 174 (329)
Q Consensus 96 ~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql 174 (329)
+.+|++|+||+|++ .+..|+.+++.+||+|+.++++++++.+.+++++++.++|+++++ ||++++||+|+++||++|+
T Consensus 207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~~~~~~~~~n~~-Np~~ieG~kT~a~EI~eQl 285 (484)
T PLN02569 207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRLIREVTAELPIYLANSL-NSLRLEGQKTAAIEILQQF 285 (484)
T ss_pred HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEecCCC-CcchhHhHHHHHHHHHHHc
Confidence 99999999999997 788999999999999999999999999999999888889999998 8999999999999999999
Q ss_pred C-C-CCEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCe--eecCCCCccccccccCCC
Q 020236 175 P-L-LDTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRI--ITLLETNTVADGLRAFLG 244 (329)
Q Consensus 175 ~-~-~d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~--~~~~~~~t~~~gl~~~~~ 244 (329)
+ + ||+||+|+|+||+++|++++|+++. +.+|+|+||+.+++++++++..|.. .+....+|+++++..+.+
T Consensus 286 ~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~P 365 (484)
T PLN02569 286 DWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGDP 365 (484)
T ss_pred CCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCCC
Confidence 8 4 9999999999999999999999874 4579999999999999999998864 344467889999886522
Q ss_pred c---ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCCh
Q 020236 245 D---LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDL 320 (329)
Q Consensus 245 ~---~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~ 320 (329)
. ..+..+++..+.++.|+|+|+++++++ ++++|+++||+||++++|++++ .+++.+.++++||+++|| |.+|.
T Consensus 366 ~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl--~~~g~i~~~~~VV~i~Tg~GlK~~ 442 (484)
T PLN02569 366 VSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKL--RASGVIGPTDRTVVVSTAHGLKFT 442 (484)
T ss_pred ccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHH--HHcCCCCCCCcEEEEeCCCcccCh
Confidence 2 345566777778899999999999999 8999999999999999999987 677767788999999999 78888
Q ss_pred HHH
Q 020236 321 GVL 323 (329)
Q Consensus 321 ~~~ 323 (329)
+..
T Consensus 443 ~~~ 445 (484)
T PLN02569 443 QSK 445 (484)
T ss_pred hHH
Confidence 754
No 50
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=5.7e-59 Score=423.48 Aligned_cols=280 Identities=24% Similarity=0.314 Sum_probs=246.4
Q ss_pred CCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236 27 HKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLRGIPAY 103 (329)
Q Consensus 27 ~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~G~~~~ 103 (329)
|+|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+++. ..+|+++|+||||+|+|++|+++|++|+
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 80 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI 80 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence 6899999999998888999999999999999999999999999865543 2679999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHcCCEEEEECCCH----HHHHHHHHHHHHHc-CCEeeCCCCCcccccccC-cchHHHHhhCC-C
Q 020236 104 IVIPKNAPKCKVENVVRYGGQVIWSEATM----HSRESVASKVLEET-GAVLVHPYNDGRIISGQG-TISLEFLEQVP-L 176 (329)
Q Consensus 104 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~-t~~~Ei~~ql~-~ 176 (329)
+|+|++.++.|+++++.+||+|+.+++++ +++.+.+++++++. +++|++||+||.+++|+. ++++||++|++ .
T Consensus 81 i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~ 160 (291)
T cd01561 81 IVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGK 160 (291)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999876 78888899988876 899999999999989876 99999999998 7
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCC
Q 020236 177 LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVD 256 (329)
Q Consensus 177 ~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~ 256 (329)
||+||+|+|+||+++|++.+|+...|.++||+|||.+++++ .+ .....++++|++.+. ..+.....+++
T Consensus 161 ~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~-----~~----~~~~~~~~~gi~~~~--~~~~~~~~~~~ 229 (291)
T cd01561 161 VDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLF-----SG----GPPGPHKIEGIGAGF--IPENLDRSLID 229 (291)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCccc-----CC----CCCCCCcCCCCCCCC--CCCccCchhCc
Confidence 99999999999999999999999999999999999999865 11 112345667776541 12223455889
Q ss_pred cEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChH
Q 020236 257 DVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLG 321 (329)
Q Consensus 257 ~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~ 321 (329)
.++.|+|+|++++++.+++++|+++||+||+++++++++ .++. .++++||+|+|| |.+|+|
T Consensus 230 ~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~--~~~~--~~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 230 EVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKL--AKRL--GPGKTIVTILPDSGERYLS 291 (291)
T ss_pred eeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHH--HHhc--CCCCeEEEEECCCccccCC
Confidence 999999999999999999999999999999999999987 4443 267899999998 788864
No 51
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=7.2e-59 Score=431.85 Aligned_cols=291 Identities=21% Similarity=0.253 Sum_probs=247.1
Q ss_pred HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc----cCCeEEEECCchHHHHHHH
Q 020236 18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ----AIKGVVTHSSGNHAAALSL 93 (329)
Q Consensus 18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~----~~~~vv~~ssGN~g~a~A~ 93 (329)
.++++...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++++++ +..+||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 346777889999999999998878899999999999999999999999999987654 2467999999999999999
Q ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHH-cCCEeeCCCCCcccc-cccCcchHH
Q 020236 94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEE-TGAVLVHPYNDGRII-SGQGTISLE 169 (329)
Q Consensus 94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~-~g~~t~~~E 169 (329)
+|+.+|++|++|+|++++..|+++|+.+||+|+.++.. .....+.+++++++ ++++|++||+||.+. .||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999753 33566777777766 478999999999987 599999999
Q ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccH
Q 020236 170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTW 248 (329)
Q Consensus 170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~ 248 (329)
|++|+. .+|+||+|+|||||++|+++++|+.+|++|||+|||.+++.+ ..+... .+. ..|++.+..+..
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~----~~g~~~----~~~-i~g~g~~~~p~~- 278 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVL----NGGKPG----PHH-ITGNGVGFKPDI- 278 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccc----cCCCCC----Cee-eeeccCCCCccc-
Confidence 999985 799999999999999999999999999999999999998653 334321 112 244443311222
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236 249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV 322 (329)
Q Consensus 249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~ 322 (329)
+..+++|+++.|+|+|++++++++++++|+++||+||+++++++++ +++. ..++++||+|+|| |.+|+++
T Consensus 279 -~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~--a~~~-~~~~~~IV~v~~d~g~kY~~~ 349 (368)
T PLN02556 279 -LDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRL--AKMP-ENKGKLIVTVHPSFGERYLSS 349 (368)
T ss_pred -cchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHH--hhhc-cCCcCEEEEEECCCCcccCCh
Confidence 2356889999999999999999999999999999999998888876 4443 2367899999998 8999987
No 52
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.2e-58 Score=419.67 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=241.3
Q ss_pred hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHc
Q 020236 22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLR 98 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~ 98 (329)
+.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+++. .++|+++|+||||.|+|++|+.+
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~ 81 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALK 81 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHc
Confidence 346689999999999988888999999999999999999999999999866543 26799999999999999999999
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHcCCEeeCCCCCccccc-ccCcchHHHHhhCC
Q 020236 99 GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEETGAVLVHPYNDGRIIS-GQGTISLEFLEQVP 175 (329)
Q Consensus 99 G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~ql~ 175 (329)
|++|++|+|++.++.|+++|+.+||+|+.+++ +++++.+.+++++++.+.+|++||+|+.++. ||.++++||++|++
T Consensus 82 G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~ 161 (290)
T TIGR01138 82 GYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTG 161 (290)
T ss_pred CCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcC
Confidence 99999999999999999999999999999986 4788888999998887767899999988665 57999999999998
Q ss_pred -CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhc
Q 020236 176 -LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDL 254 (329)
Q Consensus 176 -~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~ 254 (329)
++|+||+|+||||+++|++.+||+.+|++|||+|||.+++++. + ..++..++.+. .++ ...
T Consensus 162 ~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~-----g-------~~~~~~~~~~~----~~~--~~~ 223 (290)
T TIGR01138 162 GRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIP-----G-------IRRWPTEYLPG----IFD--ASL 223 (290)
T ss_pred CCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCcc-----C-------CCCCCCCcCCc----ccC--hhh
Confidence 7999999999999999999999999999999999999886531 1 11222222221 122 456
Q ss_pred CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236 255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV 322 (329)
Q Consensus 255 ~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~ 322 (329)
+|+++.|+|+|+++++++|++++|+++|||||+++++++++ +++ + ++++||+|+|| |.+|+++
T Consensus 224 ~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~--~~~--~-~~~~vv~v~~d~g~ky~~~ 287 (290)
T TIGR01138 224 VDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRL--ARE--L-PDAVVVAIICDRGDRYLST 287 (290)
T ss_pred CcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHH--HHH--C-CCCeEEEEECCCCccccCc
Confidence 89999999999999999999999999999999999999986 433 2 56899999998 8999885
No 53
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=4.4e-58 Score=425.79 Aligned_cols=277 Identities=25% Similarity=0.326 Sum_probs=247.2
Q ss_pred cccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236 24 LYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAY 103 (329)
Q Consensus 24 ~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~ 103 (329)
..-|.|||+++. .+||+|+|++|||||||||++.+++..+.+ .+.++|+++|+||||+|+|++|+++|++|+
T Consensus 60 l~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~-~g~~~vv~aSsGN~g~alA~~aa~~G~~~~ 131 (347)
T PRK08329 60 LTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKE-EGINEVVIDSSGNAALSLALYSLSEGIKVH 131 (347)
T ss_pred CCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHH-cCCCEEEEECCCcHHHHHHHHHHHcCCcEE
Confidence 345889999873 489999999999999999999999998854 466899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEe
Q 020236 104 IVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183 (329)
Q Consensus 104 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~ 183 (329)
||||+++++.|+.+++.+||+|+.++++++++.+.+++++++.+++|++++.||++++|++|+++||++|++.||+||+|
T Consensus 132 v~vp~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~~pD~vvvp 211 (347)
T PRK08329 132 VFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIGVPDYAFVP 211 (347)
T ss_pred EEECCCChHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHHcCCCCEEEEe
Confidence 99999999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC---cccHHHHhhc
Q 020236 184 ISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG---DLTWPIVRDL 254 (329)
Q Consensus 184 ~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~---~~~~~~~~~~ 254 (329)
+|+||+++|++++|+++. +.+|+|+|||.++++++..+ ....++++|+..+.. ...+++++++
T Consensus 212 vG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~--------~~~~t~a~gi~i~~~~~~~~~~~~l~~~ 283 (347)
T PRK08329 212 VGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS--------KSENKLADGIAIPEPPRKEEMLRALEES 283 (347)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc--------CCCCceeeeEEeCCCCCHHHHHHHHHHh
Confidence 999999999999999974 56899999999998876421 245688888886522 2356788899
Q ss_pred CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCC-CC
Q 020236 255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN-VD 319 (329)
Q Consensus 255 ~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~-~~ 319 (329)
.+..+.|+|+|++++++++++ +|+++||+||+++|+++++ .+++.+.++++||+++||++ +|
T Consensus 284 ~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l--~~~g~i~~~~~Vv~~~TG~glK~ 346 (347)
T PRK08329 284 NGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKL--LEEGLIEGGSKVLLPLSGSGLKN 346 (347)
T ss_pred CCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHH--HHhCCCCCCCeEEEEeCCCCccC
Confidence 999999999999999999985 8999999999999999987 77887888999999999954 54
No 54
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.9e-58 Score=424.58 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=248.9
Q ss_pred HHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHH
Q 020236 14 SIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAA 89 (329)
Q Consensus 14 ~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~ 89 (329)
|.....+++.+.+++|||+++++++...|.+||+|+|++|||||||||++.+++..+.+++. .++||++|+||||+
T Consensus 3 ~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~ 82 (323)
T PLN00011 3 DRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGI 82 (323)
T ss_pred chhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHH
Confidence 33445566777899999999999886666899999999999999999999999999876642 47899999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH--HHHHHHHHHHHHH-cCCEeeCCCCCccc-ccccCc
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM--HSRESVASKVLEE-TGAVLVHPYNDGRI-ISGQGT 165 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~a~~~~~~-~~~~~~~~~~n~~~-~~g~~t 165 (329)
|+|++|+.+|++|++|+|+++++.|+++++.+||+|+.++.+. +++.+.+++++++ +++++++||+|+.+ ..||.+
T Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t 162 (323)
T PLN00011 83 GLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRT 162 (323)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHH
Confidence 9999999999999999999999999999999999999998753 3456678888777 47899999998864 458999
Q ss_pred chHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC
Q 020236 166 ISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG 244 (329)
Q Consensus 166 ~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~ 244 (329)
+++||++|++ +||+||+|+||||+++|+++++|+.+|++|||+|||.+++++. .+++ ..++++|++.+..
T Consensus 163 ~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (323)
T PLN00011 163 TGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLS----GGQP-----GPHLIQGIGSGII 233 (323)
T ss_pred HHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccC----CCCC-----CCCCCCCCCCCCC
Confidence 9999999987 7999999999999999999999999999999999999997652 3332 2345667665311
Q ss_pred cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeC-CCCCChHH
Q 020236 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLS-GGNVDLGV 322 (329)
Q Consensus 245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~t-gg~~~~~~ 322 (329)
+..+ ..+.+|+++.|+|+|++++++++++++|+++||+||++++++++. .++.. .++++||+|+| ||++|+|+
T Consensus 234 ~~~~--~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~--~~~~~-~~~~~vv~i~~d~G~ky~~~ 307 (323)
T PLN00011 234 PFNL--DLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKV--AKRPE-NAGKLIVVIFPSGGERYLST 307 (323)
T ss_pred Cccc--ChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHH--HHhcc-CCCCeEEEEECCCccccCCh
Confidence 2222 245788999999999999999999999999999999999999986 44332 25778999995 58999986
No 55
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=8.9e-59 Score=423.40 Aligned_cols=283 Identities=24% Similarity=0.293 Sum_probs=241.7
Q ss_pred ccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHcC
Q 020236 23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 23 ~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
.+.+++|||+++++ ....|.+||+|+|++|||||||||++.+++..+.+++. ..+|+++|+||||+|+|++|+++|
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G 80 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARG 80 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcC
Confidence 45789999999998 45567899999999999999999999999998865543 256999999999999999999999
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH--HHHHHHHHHHHHHcC--CEeeCCCCCcc-cccccCcchHHHHhhC
Q 020236 100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM--HSRESVASKVLEETG--AVLVHPYNDGR-IISGQGTISLEFLEQV 174 (329)
Q Consensus 100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~~--~~~~~~~~n~~-~~~g~~t~~~Ei~~ql 174 (329)
++|+||+|+++++.|+++|+.+||+|+.+++++ .++.+.+++++++.+ +++++||+||. ...||.++++||++|+
T Consensus 81 l~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~ 160 (298)
T TIGR01139 81 YKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDT 160 (298)
T ss_pred CeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999874 567778888888765 66899999998 5779999999999999
Q ss_pred C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHh
Q 020236 175 P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVR 252 (329)
Q Consensus 175 ~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~ 252 (329)
+ .||+||+|+|+||+++|++.+|++.+|++|+|+|||.++++++.+ +. ..+..+|++.+ ++. .+..
T Consensus 161 ~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~----~~-----~~~~~~gl~~~~~~~---~~~~ 228 (298)
T TIGR01139 161 DGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGG----KP-----GPHKIQGIGAGFIPK---NLNR 228 (298)
T ss_pred CCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCC----CC-----CCCCCCCCCCCCCCC---ccCh
Confidence 8 799999999999999999999999999999999999998765422 11 12233455432 121 2224
Q ss_pred hcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236 253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV 322 (329)
Q Consensus 253 ~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~ 322 (329)
+.+|+++.|+|+|++++++++++++|+++||+||+++++++++ .+. +.++++||+++|| |.+|+++
T Consensus 229 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~--~~~--~~~~~~vv~v~~d~G~ky~~~ 295 (298)
T TIGR01139 229 SVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKL--AKR--PEPDKLIVVILPSTGERYLST 295 (298)
T ss_pred hhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHH--HHh--cCCCCEEEEEECCCCccccCc
Confidence 5788999999999999999999999999999999999999987 433 2367899999998 7899875
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=3.9e-58 Score=439.13 Aligned_cols=290 Identities=22% Similarity=0.284 Sum_probs=257.9
Q ss_pred hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236 22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP 101 (329)
Q Consensus 22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~ 101 (329)
+...+|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.++.+. +.++|+++||||||+|+|++|+.+|++
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~-g~~~vv~aSsGN~g~alA~~aa~~G~~ 137 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPY-AANGFIVASDGNAAASVAAYSARAGKE 137 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHc-CCCEEEEeCCChHHHHHHHHHHHcCCC
Confidence 44578999999994 7777888999999999999999999999999988554 678899999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEE
Q 020236 102 AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTII 181 (329)
Q Consensus 102 ~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv 181 (329)
|+||||+++++.|+++++.+||+|+.++++++++.+.+++++++.++|++++++||++++|++|+++||++|++ ||+||
T Consensus 138 ~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~~~~~~~~~~np~~~eG~~t~a~Ei~eq~~-pD~vv 216 (442)
T PRK05638 138 AFVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLYNVTPEYNIIGLEGQKTIAFELWEEIN-PTHVI 216 (442)
T ss_pred EEEEEeCCCCHHHHHHHHhcCcEEEEECCCHHHHHHHHHHHHHhCCeEecCCCCChhHhhhHHHHHHHHHHHHC-cCEEE
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999997 99999
Q ss_pred EeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCcccHHHHh
Q 020236 182 VPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGDLTWPIVR 252 (329)
Q Consensus 182 ~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~~~~~~~~ 252 (329)
+|+|+||+++|++++|+++.+ .+|||+|||.+++++.+++..+... ...+++.|+... .+...++.++
T Consensus 217 ~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~---~~~t~a~gl~~~~p~~~~~~~~~i~ 293 (442)
T PRK05638 217 VPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTK---CNETKALGLYVKNPVMKEYVSEAIK 293 (442)
T ss_pred EeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCC---CCCceeeeEeeCCCCCHHHHHHHHH
Confidence 999999999999999999865 3799999999999999998876432 356777777543 2334567778
Q ss_pred hcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCCh
Q 020236 253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDL 320 (329)
Q Consensus 253 ~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~ 320 (329)
++.+..+.|+|+++.++++.++ ++||++||+||+++||++++ .+++.+.++++||+++|| |.++.
T Consensus 294 ~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~--~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 294 ESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKL--GEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HhCCEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHH--HHcCCCCCCCeEEEEeCCCCCCCC
Confidence 8889999999999999988876 58999999999999999987 677767789999999999 55663
No 57
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=3.9e-57 Score=418.25 Aligned_cols=297 Identities=22% Similarity=0.243 Sum_probs=257.0
Q ss_pred HhccccCCCCCccchhhhhhcCC-eEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236 21 RISLYIHKTPVLSSETLNSMSGR-SLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g~-~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
.+...+++|||+++++|+..+|. +||+|+|++|||||||||++.+++.++.+ .+..+|+++||||||+|+|++|+.+|
T Consensus 16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~-~g~~~vv~aSsGN~g~a~A~~a~~~g 94 (328)
T TIGR00260 16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALE-LGNDTVLCASTGNTGAAAAAYAGKAG 94 (328)
T ss_pred hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHH-cCCCEEEEeCCcHHHHHHHHHhccCC
Confidence 34556799999999999888886 99999999999999999999999998854 45678999999999999999999999
Q ss_pred CCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCC-cccccccCcchHHHHhhCC--
Q 020236 100 IPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYND-GRIISGQGTISLEFLEQVP-- 175 (329)
Q Consensus 100 ~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n-~~~~~g~~t~~~Ei~~ql~-- 175 (329)
++|+|++|++ .++.|++.++.+||+|+.++++++++.+.++++.++.++++.+++++ |.+++||.++++||++|++
T Consensus 95 ~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~t~~~Ei~~q~~~~ 174 (328)
T TIGR00260 95 VKVVILYPAGKISLGKLAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSIPYRLEGQKTYAFEAVEQLGWE 174 (328)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCcEEEEecCCHHHHHHHHHHHHhhcCeeecccCCCCCeEeeeehhHHHHHHHHhCCC
Confidence 9999999998 89999999999999999999999999999999888766666665432 8899999999999999997
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHhCC-----CCEEEEEecCCCchHHHHHH-cCCeeecCCCCccccccccCC---Ccc
Q 020236 176 LLDTIIVPISGGGLISGVALAAKSIKP-----AIRILAAEPIGANDAAQSKA-AGRIITLLETNTVADGLRAFL---GDL 246 (329)
Q Consensus 176 ~~d~vv~~~GtGg~~~Gi~~~~k~~~~-----~~~vi~v~~~~~~~~~~~~~-~g~~~~~~~~~t~~~gl~~~~---~~~ 246 (329)
.||+||+|+|+||+++|++.+|+.... .+++++|||.+++++..++. .++........|++++++.+. .+.
T Consensus 175 ~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~p~~~~~ 254 (328)
T TIGR00260 175 APDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGNPANWER 254 (328)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCCCCCHHH
Confidence 699999999999999999999998510 23999999999988877764 455555555578888886542 234
Q ss_pred cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC-CCCh
Q 020236 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG-NVDL 320 (329)
Q Consensus 247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg-~~~~ 320 (329)
.+++++++.++.+.|+|+|++++++++++++|+++||+||+++++++++ .+++.+.++++||+++||+ .++.
T Consensus 255 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~--~~~~~~~~~~~vv~i~tG~~~k~~ 327 (328)
T TIGR00260 255 ALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKL--VEKGTADPAERVVCALTGNGLKDP 327 (328)
T ss_pred HHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHH--HhCCCCCCCCcEEEEecCCCCCCC
Confidence 6677788999999999999999999999999999999999999999987 5555566789999999984 5654
No 58
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=2e-56 Score=431.04 Aligned_cols=295 Identities=23% Similarity=0.316 Sum_probs=246.5
Q ss_pred HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHH
Q 020236 20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAK 96 (329)
Q Consensus 20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~ 96 (329)
+++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||+|+|++|+
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~ 82 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAA 82 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 34566789999999999998778899999999999999999999999999866543 267999999999999999999
Q ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HH---HHHHHHHHHHHH-cCCEeeCCCCCcccc-cccCcchHH
Q 020236 97 LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MH---SRESVASKVLEE-TGAVLVHPYNDGRII-SGQGTISLE 169 (329)
Q Consensus 97 ~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~---~~~~~a~~~~~~-~~~~~~~~~~n~~~~-~g~~t~~~E 169 (329)
.+|++|++|+|+++++.|+++++.+||+|+.++++ ++ ...+.+++++++ .+++|++||+|+.+. .||.++++|
T Consensus 83 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~E 162 (454)
T TIGR01137 83 IKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPE 162 (454)
T ss_pred HcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHH
Confidence 99999999999999999999999999999999864 33 235567777776 478889999998864 789999999
Q ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeec-CCCCccccccccCCCccc
Q 020236 170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL-LETNTVADGLRAFLGDLT 247 (329)
Q Consensus 170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~-~~~~t~~~gl~~~~~~~~ 247 (329)
|++|++ .||+||+|+||||+++|++.++|+.+|.++|++|||.+++ +..+..... ....+..+|++.+. ..
T Consensus 163 i~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~--~~ 235 (454)
T TIGR01137 163 ILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-----LAQPENLNKTGRTPYKVEGIGYDF--IP 235 (454)
T ss_pred HHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-----ccCCCcccCCCCCCccCCCCCCCC--CC
Confidence 999998 7999999999999999999999999999999999999875 223322211 11134556665431 11
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHH
Q 020236 248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLW 324 (329)
Q Consensus 248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~ 324 (329)
+.+..+++|+.+.|+|+|++++++++++++|+++||+||++++|++++ +++ .+.++++||+++|| |.+|++++.
T Consensus 236 ~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~--~~~-~~~~~~~vv~~~~d~g~~y~~~~~ 310 (454)
T TIGR01137 236 TVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKA--AED-ELTEDQVIVVLLPDSIRNYMTKFL 310 (454)
T ss_pred CcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHH--HHh-hcCCCCEEEEEECCCCccccCccc
Confidence 122356789999999999999999999999999999999999999987 443 34568899999997 789998763
No 59
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.3e-55 Score=413.66 Aligned_cols=294 Identities=19% Similarity=0.154 Sum_probs=252.1
Q ss_pred ccCCCCCccchhhhhhcCC-eEEEE-------ecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHH
Q 020236 25 YIHKTPVLSSETLNSMSGR-SLFFK-------CECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAK 96 (329)
Q Consensus 25 ~i~~TPl~~~~~l~~~~g~-~i~~K-------~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~ 96 (329)
..+.|||++.++|++.+|. +||+| +|++|||||||||++.+++..+.+. +.++|+++|+||||.|+|++|+
T Consensus 59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~-g~~~Vv~aSsGN~g~alA~~aa 137 (398)
T TIGR03844 59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKER-GGKTLVVASAGNTGRAFAEVSA 137 (398)
T ss_pred CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHH
Confidence 3467999999999999996 99995 5559999999999999999988655 5788999999999999999999
Q ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCC
Q 020236 97 LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPL 176 (329)
Q Consensus 97 ~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~ 176 (329)
++|++|+||||++.++.+...++.+|++|+.++++++++.+.+++++++.+++..++++||+.++|++|+++||++|+++
T Consensus 138 ~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~~d~a~~~a~~~a~~~g~~~~~~~~~p~~ieG~~Ti~~Ei~eql~~ 217 (398)
T TIGR03844 138 ITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGDYTDAIALADRIATLPGFVPEGGARNVARRDGMGTVMLDAAVTIGS 217 (398)
T ss_pred HcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHhCCccccCCCCCHHHHhhHHHHHHHHHHHcCC
Confidence 99999999999986543333357899999999999999999999998887876566778999999999999999999985
Q ss_pred -CCEEEEeCCCChHHHHHHHHHHHhC-------CCCEEEEEecCCCchHHHHHHcCCeeecCC---C-------Cccccc
Q 020236 177 -LDTIIVPISGGGLISGVALAAKSIK-------PAIRILAAEPIGANDAAQSKAAGRIITLLE---T-------NTVADG 238 (329)
Q Consensus 177 -~d~vv~~~GtGg~~~Gi~~~~k~~~-------~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~---~-------~t~~~g 238 (329)
||+||+|+|+|+.+.|++.+++++. .-+++++||++++++++++++.|.....+. + .+++++
T Consensus 218 ~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~ 297 (398)
T TIGR03844 218 LPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDV 297 (398)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecce
Confidence 9999999999988999999988842 337889999999999999999987542211 1 578888
Q ss_pred cccC-C-Cc---ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEe
Q 020236 239 LRAF-L-GD---LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVL 313 (329)
Q Consensus 239 l~~~-~-~~---~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~ 313 (329)
+... + .. ..++.++++.+.++.|+|+|+.+|++.|++++|+++||+||+++||++++ .+++.+.++++||+++
T Consensus 298 l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~--~~~g~i~~~~~Vv~vl 375 (398)
T TIGR03844 298 LTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKA--VESGFIGPDDDILLNI 375 (398)
T ss_pred eeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHH--HHhCCCCCCCeEEEEE
Confidence 8654 2 11 24788899999999999999999999999999999999999999999987 6677777889999999
Q ss_pred CCCC-CChH
Q 020236 314 SGGN-VDLG 321 (329)
Q Consensus 314 tgg~-~~~~ 321 (329)
||++ +++.
T Consensus 376 TG~glK~~~ 384 (398)
T TIGR03844 376 TGGGYKRLR 384 (398)
T ss_pred CCcchhhHH
Confidence 9954 4443
No 60
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=7.2e-55 Score=408.78 Aligned_cols=316 Identities=21% Similarity=0.209 Sum_probs=252.6
Q ss_pred CCCCCCHHHHHHHHHHhccccC-CCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEEC
Q 020236 6 EKYAANFSSIKEAQKRISLYIH-KTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHS 83 (329)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~-~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~s 83 (329)
++...+.+.+.+..+.+..+++ +|||+++++|++.+| .+||+|+|++|||||||||.+..++..+.+.+....|+++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~s 106 (385)
T TIGR00263 27 EDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETG 106 (385)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3344555555555555666775 999999999999888 89999999999999999999999998775544333455689
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcCC-CCH--HHHHHHHHcCCEEEEECC---CHHHHH-HHHHHHHHH-cCCEee-CCC
Q 020236 84 SGNHAAALSLAAKLRGIPAYIVIPKN-APK--CKVENVVRYGGQVIWSEA---TMHSRE-SVASKVLEE-TGAVLV-HPY 154 (329)
Q Consensus 84 sGN~g~a~A~~a~~~G~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~---~~~~~~-~~a~~~~~~-~~~~~~-~~~ 154 (329)
+||||+|+|++|+.+|++|+||||+. .+. .++++|+.+||+|+.++. .++++. +.+++++++ .+.+|+ +++
T Consensus 107 sGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~ 186 (385)
T TIGR00263 107 AGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSA 186 (385)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCc
Confidence 99999999999999999999999986 443 578899999999999974 366653 445555655 455565 455
Q ss_pred CC--cc---cccccCcchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC----chHHHH
Q 020236 155 ND--GR---IISGQGTISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA----NDAAQS 220 (329)
Q Consensus 155 ~n--~~---~~~g~~t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~----~~~~~~ 220 (329)
.| |+ ...|++|+++||++|+ + .||+||+|+|+||+++|++.++.. .|+++||+|||.++ ..+..+
T Consensus 187 ~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~ 265 (385)
T TIGR00263 187 VGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAAT 265 (385)
T ss_pred CCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhh
Confidence 43 23 2488999999999997 2 489999999999999999998855 69999999999986 334555
Q ss_pred HHcCCee----------e-----cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc
Q 020236 221 KAAGRII----------T-----LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS 284 (329)
Q Consensus 221 ~~~g~~~----------~-----~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps 284 (329)
+..|.+. . .+...|++.|++.. +++..+.+.....++.+.|+|+|+++++++|+++|||+++|+
T Consensus 266 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~s 345 (385)
T TIGR00263 266 LAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALE 345 (385)
T ss_pred hhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechH
Confidence 6666542 1 33456888888765 667777777778889999999999999999999999999999
Q ss_pred hHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHh
Q 020236 285 GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDS 326 (329)
Q Consensus 285 sa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~ 326 (329)
||+++++++++ +++ +.++++||+++|| |++|++.+.+.
T Consensus 346 saaalaa~~~~--~~~--l~~~~~Vv~i~~g~G~~d~~~~~~~ 384 (385)
T TIGR00263 346 SSHALAHLEKI--APT--LPKDQIVVVNLSGRGDKDIFTIAKY 384 (385)
T ss_pred HHHHHHHHHHH--HHh--CCCCCeEEEEeCCCCcCCHHHHHhh
Confidence 99999999986 333 4478999999999 99999998764
No 61
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=5.7e-55 Score=407.51 Aligned_cols=310 Identities=17% Similarity=0.212 Sum_probs=249.0
Q ss_pred CHHHHHHHHHHhccccC-CCCCccchhhhhhc------CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEE-EE
Q 020236 11 NFSSIKEAQKRISLYIH-KTPVLSSETLNSMS------GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVV-TH 82 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~i~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv-~~ 82 (329)
+.+...+....+.+++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+..++..+.+. +.+.+| ++
T Consensus 48 ~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~-g~~~vIaes 126 (410)
T PLN02618 48 DPEFQEELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRL-GKKRIIAET 126 (410)
T ss_pred ChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHc-CCCEEEEEc
Confidence 33444455556678886 99999999999877 48999999999999999999999988876544 455555 55
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEE---CCCHHHHH-HHHHHHHHH-cCCEee-CC
Q 020236 83 SSGNHAAALSLAAKLRGIPAYIVIPKNA---PKCKVENVVRYGGQVIWS---EATMHSRE-SVASKVLEE-TGAVLV-HP 153 (329)
Q Consensus 83 ssGN~g~a~A~~a~~~G~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~---~~~~~~~~-~~a~~~~~~-~~~~~~-~~ 153 (329)
|+||||.|+|++|+.+|++|+||||+.. +..++.+|+.+||+|+.+ +++++++. +.+++++++ .+.+|+ ++
T Consensus 127 gaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs 206 (410)
T PLN02618 127 GAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGS 206 (410)
T ss_pred CcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecC
Confidence 6999999999999999999999999863 346677999999999999 56777776 455667765 444555 33
Q ss_pred CC--Cc---ccccccCcchHHHHhhC-----CCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC----chHHH
Q 020236 154 YN--DG---RIISGQGTISLEFLEQV-----PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA----NDAAQ 219 (329)
Q Consensus 154 ~~--n~---~~~~g~~t~~~Ei~~ql-----~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~----~~~~~ 219 (329)
.. +| +..+++++++.||.+|+ +.||+||+|+|+||+++|++.+|+. .|+++||||||.++ +.+..
T Consensus 207 ~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a 285 (410)
T PLN02618 207 VAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAA 285 (410)
T ss_pred cCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCccccccccc
Confidence 22 23 24589999999998776 3699999999999999999999975 68999999999987 22334
Q ss_pred HHHcCCee---------------ecCCCCccccccccC-CCcccHHHHhh-cCCcEEEeCHHHHHHHHHHHHHHcCceeC
Q 020236 220 SKAAGRII---------------TLLETNTVADGLRAF-LGDLTWPIVRD-LVDDVITVEDKEIIEAMKLCYEILKVAVE 282 (329)
Q Consensus 220 ~~~~g~~~---------------~~~~~~t~~~gl~~~-~~~~~~~~~~~-~~~~~~~V~d~e~~~a~~~l~~~egi~~~ 282 (329)
++..|++. +....++++.||+.+ +++. +..+++ ..++.+.|+|+|+++++++|+++|||+++
T Consensus 286 ~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~-~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~ 364 (410)
T PLN02618 286 TLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPE-HSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPA 364 (410)
T ss_pred chhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHH-HHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEc
Confidence 45555431 133567899999875 6666 455555 67899999999999999999999999999
Q ss_pred cchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhh
Q 020236 283 PSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSF 327 (329)
Q Consensus 283 pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~ 327 (329)
++|++++++++++ +++ +.++++||+++|| |.+|++++.+.+
T Consensus 365 ~sSa~a~a~a~~~--a~~--l~~~~~iVv~lsgrG~Kd~~~v~~~~ 406 (410)
T PLN02618 365 LETSHALAYLEKL--CPT--LPDGTKVVVNCSGRGDKDVNTAIKYL 406 (410)
T ss_pred hhHHHHHHHHHHH--hHh--cCCCCEEEEEeCCCCcCCHHHHHHHh
Confidence 9999999999987 443 4578999999999 899999998865
No 62
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.3e-54 Score=405.18 Aligned_cols=303 Identities=19% Similarity=0.210 Sum_probs=245.6
Q ss_pred HhccccC-CCCCccchhhhhhc-CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHc
Q 020236 21 RISLYIH-KTPVLSSETLNSMS-GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLR 98 (329)
Q Consensus 21 ~~~~~i~-~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~ 98 (329)
-+.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+..++..+.+.+..+.|+++|+||||+|+|++|+.+
T Consensus 54 ~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~ 133 (402)
T PRK13028 54 LLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALF 133 (402)
T ss_pred HHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHc
Confidence 3346776 89999999999988 489999999999999999999999998875554444455689999999999999999
Q ss_pred CCCEEEEEcCCCCH---HHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHH-cCCEeeC-CCC--Ccc---cccccC
Q 020236 99 GIPAYIVIPKNAPK---CKVENVVRYGGQVIWSEA---TMHSRESVASK-VLEE-TGAVLVH-PYN--DGR---IISGQG 164 (329)
Q Consensus 99 G~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~-~~~~~~~-~~~--n~~---~~~g~~ 164 (329)
|++|+||||+..++ .++.+|+.+||+|+.++. +++++.+.+.+ ++++ .+.+|+. ++. +|+ ...|++
T Consensus 134 Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~ 213 (402)
T PRK13028 134 GLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQS 213 (402)
T ss_pred CCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhH
Confidence 99999999986443 567899999999999974 67788777644 5555 4566663 322 233 246899
Q ss_pred cchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCC----CchHHHHHHcCCeee-------
Q 020236 165 TISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG----ANDAAQSKAAGRIIT------- 228 (329)
Q Consensus 165 t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~----~~~~~~~~~~g~~~~------- 228 (329)
+++.||.+|+ + .||+||+|+|+||+++|++.+|++ .|+++||||||.+ ++.+..++..|++..
T Consensus 214 tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~ 292 (402)
T PRK13028 214 VIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSY 292 (402)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceeccccee
Confidence 9999999886 2 599999999999999999999986 4899999999988 222222344444311
Q ss_pred --------cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcccccc
Q 020236 229 --------LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK 299 (329)
Q Consensus 229 --------~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~ 299 (329)
....++++.|++.+ +++.++.+.....++.+.|+|+|+++++++|+++|||+++++||+++|+++++ ++
T Consensus 293 ~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~--a~ 370 (402)
T PRK13028 293 VLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKL--AP 370 (402)
T ss_pred eccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHh--hh
Confidence 12357899999864 77777777777778999999999999999999999999999999999999987 43
Q ss_pred CCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 300 NPAWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 300 ~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
+ +.++++||+++|| |++|++++.++++
T Consensus 371 ~--l~~~~~VVv~lsG~G~kd~~~~~~~~~ 398 (402)
T PRK13028 371 E--LSKDETILVNLSGRGDKDIDYVAEMLG 398 (402)
T ss_pred h--cCCCCeEEEEECCCCccCHHHHHHHhC
Confidence 3 4578999999999 8999999988764
No 63
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2e-54 Score=403.26 Aligned_cols=302 Identities=20% Similarity=0.237 Sum_probs=245.0
Q ss_pred hccccC-CCCCccchhhhhhc-CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236 22 ISLYIH-KTPVLSSETLNSMS-GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 22 ~~~~i~-~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
+.+++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+..++..+.+.++.+.|+++|+||||.|+|++|+++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~G 130 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLG 130 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcC
Confidence 346777 69999999999988 5899999999999999999999999988755554445565899999999999999999
Q ss_pred CCEEEEEcCCC-C--HHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHHHHH-cCCEee-CCCC--Ccc---cccccCc
Q 020236 100 IPAYIVIPKNA-P--KCKVENVVRYGGQVIWSEA---TMHSRESVA-SKVLEE-TGAVLV-HPYN--DGR---IISGQGT 165 (329)
Q Consensus 100 ~~~~i~~p~~~-~--~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a-~~~~~~-~~~~~~-~~~~--n~~---~~~g~~t 165 (329)
++|+||||+.. + ..++.+|+.+||+|+.++. +++++.+.+ +.+.++ .+.+|+ .++. +|+ ..+||++
T Consensus 131 l~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~t 210 (397)
T PRK04346 131 LECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSV 210 (397)
T ss_pred CcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcch
Confidence 99999999863 3 3577889999999999985 566554444 445655 354554 3333 233 2469999
Q ss_pred chHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc----hHHHHHHcCCee---------
Q 020236 166 ISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN----DAAQSKAAGRII--------- 227 (329)
Q Consensus 166 ~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~----~~~~~~~~g~~~--------- 227 (329)
++.||++|+. .||+||+|+|+||+++|++.+|+. .|.+|||||||.++. ....++..|++.
T Consensus 211 ig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~ 289 (397)
T PRK04346 211 IGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYL 289 (397)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeecccccee
Confidence 9999999974 599999999999999999999975 789999999999862 234455555542
Q ss_pred ------ecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC
Q 020236 228 ------TLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN 300 (329)
Q Consensus 228 ------~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~ 300 (329)
.....++++.|++.+ +++..+.+.....++.+.|+|+|+++++++|+++|||+++++||.|+++++++ ++.
T Consensus 290 ~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kl--a~~ 367 (397)
T PRK04346 290 LQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKL--APT 367 (397)
T ss_pred cccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHh--hhh
Confidence 233468899999875 77777766667778999999999999999999999999999999999999886 433
Q ss_pred CCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 301 PAWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 301 ~~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
+.++++||+++|| |++|++++.+.+.
T Consensus 368 --l~~~~~Vvv~lsGrG~kd~~~~~~~~~ 394 (397)
T PRK04346 368 --LGKDQIIVVNLSGRGDKDVFTVAKLLG 394 (397)
T ss_pred --cCCCCeEEEEeCCCCccCHHHHHHHhc
Confidence 4578999999999 8999999998763
No 64
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.8e-54 Score=402.10 Aligned_cols=307 Identities=20% Similarity=0.216 Sum_probs=242.7
Q ss_pred CHHHHHHHHHHhccccC-CCCCccchhhhhhc-CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE-ECCchH
Q 020236 11 NFSSIKEAQKRISLYIH-KTPVLSSETLNSMS-GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNH 87 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~i~-~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~ 87 (329)
+++.....+....++++ +|||+++++|++.+ +.+||+|+|++|||||||||.+..++..+.++ +...+++ +|+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~-g~~~vv~~~ssGN~ 94 (365)
T cd06446 16 DPDFPEELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRM-GKKRVIAETGAGQH 94 (365)
T ss_pred CcccHHHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHc-CCCeEEEecCchHH
Confidence 33444444444555554 99999999999888 48999999999999999999999999877554 4556666 699999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECCC---HHHHHHHHHH-HHHHc-C-CEeeCCCC--C
Q 020236 88 AAALSLAAKLRGIPAYIVIPKNAP---KCKVENVVRYGGQVIWSEAT---MHSRESVASK-VLEET-G-AVLVHPYN--D 156 (329)
Q Consensus 88 g~a~A~~a~~~G~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~-~~~~~-~-~~~~~~~~--n 156 (329)
|+|+|++|+.+|++|+||+|+..+ +.++.+++.+||+|+.++.. ++++...+.+ ..++. + +|+++++. +
T Consensus 95 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~ 174 (365)
T cd06446 95 GVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPH 174 (365)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCC
Confidence 999999999999999999998643 36788999999999999853 4555543433 34432 4 44444432 2
Q ss_pred c---ccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHH----HHHcC
Q 020236 157 G---RIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQ----SKAAG 224 (329)
Q Consensus 157 ~---~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~----~~~~g 224 (329)
| +..+|++|+++||++|++ .||+||+|+|+||+++|++.+++. .+.++||+|||.+++++.. ++..+
T Consensus 175 ~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g 253 (365)
T cd06446 175 PYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGG 253 (365)
T ss_pred CchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCC
Confidence 2 357899999999999986 599999999999999999998877 4689999999999887752 33333
Q ss_pred Cee---------------ecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHH
Q 020236 225 RII---------------TLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIG 288 (329)
Q Consensus 225 ~~~---------------~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~a 288 (329)
... ......|+++|+... +++..+.+..+++|+++.|+|+|++++++++++++|+++||+||++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaa 333 (365)
T cd06446 254 TAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHA 333 (365)
T ss_pred CcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHH
Confidence 321 123456788888753 5566666777889999999999999999999999999999999999
Q ss_pred HHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236 289 LAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL 323 (329)
Q Consensus 289 laa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~ 323 (329)
+++++++ .+++ .++++||+|+|| |++|++++
T Consensus 334 lAa~~~~--~~~~--~~~~~Vv~i~~g~G~k~~~~~ 365 (365)
T cd06446 334 IAYAIKL--AKKL--GKEKVIVVNLSGRGDKDLQTV 365 (365)
T ss_pred HHHHHHH--HHhc--CCCCeEEEEeCCCCccccccC
Confidence 9999987 4443 367899999999 99998763
No 65
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.1e-53 Score=379.60 Aligned_cols=239 Identities=35% Similarity=0.560 Sum_probs=224.9
Q ss_pred CCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc--CCeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 29 TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA--IKGVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 29 TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~--~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
|||+++++|++..+.+||+|+|++|||||||||++.+++..+.+++. ...|+++|+||||.|+|++|+.+|++|++|+
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~ 80 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVM 80 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 89999999988777999999999999999999999999998866543 6789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHH-cCCEeeCCCCCcccccccCcchHHHHhhCCC--CCEEEEe
Q 020236 107 PKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEE-TGAVLVHPYNDGRIISGQGTISLEFLEQVPL--LDTIIVP 183 (329)
Q Consensus 107 p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~--~d~vv~~ 183 (329)
|++.++.++++|+.+|++|+.++++++++.+.+++++++ .+++|++||+|+.+++|+.++++||++|++. ||+||+|
T Consensus 81 p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp 160 (244)
T cd00640 81 PEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVP 160 (244)
T ss_pred CCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 999999999999999999999999999999999999998 7999999999999999999999999999996 9999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCCcEEEeCH
Q 020236 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVED 263 (329)
Q Consensus 184 ~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d 263 (329)
+|+||+++|++.+|++.+|.++||+|++ .++.|+|
T Consensus 161 ~GtGg~~~G~~~~~~~~~~~~~ii~v~~---------------------------------------------~~~~v~d 195 (244)
T cd00640 161 VGGGGNIAGIARALKELLPNVKVIGVEP---------------------------------------------EVVTVSD 195 (244)
T ss_pred cCccHHHHHHHHHHHHhCCCCEEEEEee---------------------------------------------eEEEECH
Confidence 9999999999999999999999999997 6889999
Q ss_pred HHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC
Q 020236 264 KEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG 316 (329)
Q Consensus 264 ~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg 316 (329)
+|++++++++++++|+++||+||++++++.++ .+++ .++++||+++|||
T Consensus 196 ~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~--~~~~--~~~~~vv~v~tg~ 244 (244)
T cd00640 196 EEALEAIRLLAREEGILVEPSSAAALAAALKL--AKKL--GKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHHHHHHHHcCceECHhHHHHHHHHHHH--HHhc--CCCCEEEEEeCCC
Confidence 99999999999999999999999999999987 4443 3678999999986
No 66
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.2e-54 Score=398.27 Aligned_cols=288 Identities=33% Similarity=0.483 Sum_probs=243.1
Q ss_pred hccccCCCCCccch--hhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236 22 ISLYIHKTPVLSSE--TLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 22 ~~~~i~~TPl~~~~--~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
|.+.+++|||++++ .++...+.+||+|+|++|||||||||++.+++.++.++ +.++|+++|+||||.|+|++|+.+|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~-~~~~vv~assGN~g~a~A~~a~~~g 79 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEK-GGRTVVGASSGNHGRALAYAAARLG 79 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHT-TTSEEEEESSSHHHHHHHHHHHHHT
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccc-ccceeeeeccCCceehhhhhhhhcc
Confidence 45789999999976 45556679999999999999999999999999997544 6788999999999999999999999
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-------CCEeeCCCCCcccccccCcchHHHHh
Q 020236 100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-------GAVLVHPYNDGRIISGQGTISLEFLE 172 (329)
Q Consensus 100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~n~~~~~g~~t~~~Ei~~ 172 (329)
++|++|+|++.++.++++++.+||+|+.++.++++..+.+.+++++. ... ++|++|+....|+.++++||++
T Consensus 80 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~Ei~~ 158 (306)
T PF00291_consen 80 LKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE-LNQYNNPNVIAGYATIGLEIYE 158 (306)
T ss_dssp CEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE-ESTTTSHHHHHHHHHHHHHHHH
T ss_pred ccceeeeccccccccccceeeecceEEEccccccccccccccccccccccccccccc-cCcccchhhhhhhhhcchhccc
Confidence 99999999999999999999999999999987665555555544321 122 6777788899999999999999
Q ss_pred hCCCCC--EEEEeCCCChHHHHHHHHHHH--hCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCc
Q 020236 173 QVPLLD--TIIVPISGGGLISGVALAAKS--IKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGD 245 (329)
Q Consensus 173 ql~~~d--~vv~~~GtGg~~~Gi~~~~k~--~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~ 245 (329)
|++.|| +||+|+||||+++|++.+++. . |++++|+|++.+++++++++..|.....+...++. |+..+ .+.
T Consensus 159 q~~~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~-gl~~~~~~~~~ 236 (306)
T PF00291_consen 159 QLGKPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIA-GLGVPMPFPGE 236 (306)
T ss_dssp HHTTESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSST-GGTSSSCTTTT
T ss_pred ccccccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeee-cccCCccchhh
Confidence 997555 499999999999999999999 7 89999999999999999999999876544333444 77754 345
Q ss_pred ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCC--CCCCeEEEEeCC
Q 020236 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAW--QDSKKIGIVLSG 315 (329)
Q Consensus 246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~--~~~~~vv~v~tg 315 (329)
..+++++++.+.++.|+|+|++++++++++++|+++||++|++++++++. .+++.+ +++++||+|+||
T Consensus 237 ~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~--~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 237 LDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKL--AERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHH--HHHTGCHTTTTSEEEEEE-B
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHH--HHhCCccccCCCeEEEEcCC
Confidence 67888999999999999999999999999999999999999999999987 444433 478999999997
No 67
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.7e-53 Score=401.04 Aligned_cols=302 Identities=23% Similarity=0.251 Sum_probs=238.5
Q ss_pred cccc-CCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHc
Q 020236 23 SLYI-HKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLR 98 (329)
Q Consensus 23 ~~~i-~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~ 98 (329)
...+ ++|||+++++|++.+| .+||+|+|++|||||||||++.+++.++.++ +.+++++ +|+||||.|+|++|+.+
T Consensus 62 ~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~-G~~~~vtetssGN~G~alA~aaa~~ 140 (419)
T TIGR01415 62 YAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIE-GAKRLVTETGAGQWGSALSLAGALF 140 (419)
T ss_pred HHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHc-CCCeEEEecCchHHHHHHHHHHHHc
Confidence 3445 4899999999998887 6999999999999999999999999988655 4556665 68999999999999999
Q ss_pred CCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCHHHH------------------HHHHHHHHHH-c-CCEeeCCCC
Q 020236 99 GIPAYIVIPKNA---PKCKVENVVRYGGQVIWSEATMHSR------------------ESVASKVLEE-T-GAVLVHPYN 155 (329)
Q Consensus 99 G~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~------------------~~~a~~~~~~-~-~~~~~~~~~ 155 (329)
|++|+||||+.. ++.|+.+|+.+||+|+.++++++++ ...+.+.+++ . ..|+++++.
T Consensus 141 Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~ 220 (419)
T TIGR01415 141 GLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVL 220 (419)
T ss_pred CCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 999999999853 5688999999999999999876543 3345555554 3 346666665
Q ss_pred CcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHh----CCCCEEEEEecCCCchHHHHHHc----
Q 020236 156 DGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSI----KPAIRILAAEPIGANDAAQSKAA---- 223 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~----~~~~~vi~v~~~~~~~~~~~~~~---- 223 (329)
| ....|+.++++||++|++ .||+||+|+|+||+++|++.+|+.. .+++|+|+|||.+|+++.++...
T Consensus 221 n-~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~ 299 (419)
T TIGR01415 221 N-HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFG 299 (419)
T ss_pred c-HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCccccccc
Confidence 5 456799999999999997 4999999999999999999988432 25899999999999988765421
Q ss_pred --CCeeecC----------CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHH
Q 020236 224 --GRIITLL----------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLA 290 (329)
Q Consensus 224 --g~~~~~~----------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~ala 290 (329)
+..++.. .+.+++.|+... .++....+.++.+.+.+.|+|+|+++++++|+++|||+++|+||++++
T Consensus 300 ~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~ala 379 (419)
T TIGR01415 300 DTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIA 379 (419)
T ss_pred ccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 1111111 234566666653 333333344555567899999999999999999999999999999999
Q ss_pred HHhccccccCCCC-CCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 291 AVLSDGFRKNPAW-QDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 291 a~~~~~~~~~~~~-~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
|+++. +++..+ +++++||+++|| |++|++.|.+.+.
T Consensus 380 aai~~--a~~~~~~~~~~vvv~~lsG~G~~d~~~y~~~~~ 417 (419)
T TIGR01415 380 AAIDE--ARKCRETGEEKVILFNLSGHGLLDLKAYAKYLH 417 (419)
T ss_pred HHHHH--HHhcCcCCCCeEEEEEcCCCCcCCHHHHHHHhc
Confidence 99987 444332 234578899999 9999999998764
No 68
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-54 Score=379.92 Aligned_cols=294 Identities=21% Similarity=0.243 Sum_probs=246.6
Q ss_pred HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHH
Q 020236 18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSL 93 (329)
Q Consensus 18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~ 93 (329)
......+.+|+|||+.++++...+.++||+|+|++||+||.|||.++.|+.+|+++|. ..+++++||||+|+++|+
T Consensus 42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~ 121 (362)
T KOG1252|consen 42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY 121 (362)
T ss_pred hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence 4455667899999999999877777999999999999999999999999999987763 477999999999999999
Q ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-----HHHHHHHHHHHHHH-cCCEeeCCCCCcc-cccccCcc
Q 020236 94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-----MHSRESVASKVLEE-TGAVLVHPYNDGR-IISGQGTI 166 (329)
Q Consensus 94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~~n~~-~~~g~~t~ 166 (329)
+|+..|++|+++||+.++.+|+..|+.+||+|+.+|.. .+.+...+.++..+ ++.+.++||.||. ...||.++
T Consensus 122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt 201 (362)
T KOG1252|consen 122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT 201 (362)
T ss_pred HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence 99999999999999999999999999999999999862 24477788888777 7899999999987 56899999
Q ss_pred hHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc
Q 020236 167 SLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD 245 (329)
Q Consensus 167 ~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~ 245 (329)
++|||.|+. ++|.||.++|||||++|+++++|+++|+++|++|+|..+. + .++..... ..+. .+|++.+..+
T Consensus 202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~-~----~~~~~~g~-~~~~-I~GIGyg~~p 274 (362)
T KOG1252|consen 202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESI-V----LSGGKPGP-TFHK-IQGIGYGFIP 274 (362)
T ss_pred cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcce-e----ccCCCCCC-Cccc-eeccccCcCc
Confidence 999999997 7999999999999999999999999999999999999986 2 22221110 1122 2455544333
Q ss_pred ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEE-eCCCCCChHHH
Q 020236 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIV-LSGGNVDLGVL 323 (329)
Q Consensus 246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v-~tgg~~~~~~~ 323 (329)
.+ ++...+|..+.+.++|++.+.|+++.+||+++++|||++++++++. +++.. +.++-||++ -++|.+|++++
T Consensus 275 ~~--ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~--a~~~e-n~~kliV~~~pd~ge~Y~st~ 348 (362)
T KOG1252|consen 275 TT--LDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKL--AKRPE-NAGKLIVVTFPDFGERYLSTF 348 (362)
T ss_pred cc--cchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHH--Hhccc-cCCcEEEEECCCcchhhhhhh
Confidence 32 2356788999999999999999999999999999999999999987 55433 456666666 34589999875
No 69
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1e-52 Score=396.20 Aligned_cols=307 Identities=21% Similarity=0.261 Sum_probs=239.3
Q ss_pred HHHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHH
Q 020236 19 QKRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAA 95 (329)
Q Consensus 19 ~~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a 95 (329)
...++..+++|||+++++|++.+| .+||+|+|++||+||||||++..++.++.++ +...+++ .|+||||.|+|++|
T Consensus 68 v~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~-G~~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 68 VREIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKE-GIKRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HHHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHC-CCCEEEEccCchHHHHHHHHHH
Confidence 333446678999999999998887 6999999999999999999999999887555 4556665 57999999999999
Q ss_pred HHcCCCEEEEEcCC---CCHHHHHHHHHcCCEEEEECCCHHH------------------HHHHHHHHHHH-cCCEeeCC
Q 020236 96 KLRGIPAYIVIPKN---APKCKVENVVRYGGQVIWSEATMHS------------------RESVASKVLEE-TGAVLVHP 153 (329)
Q Consensus 96 ~~~G~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~~------------------~~~~a~~~~~~-~~~~~~~~ 153 (329)
+.+|++|+||||+. .++.|+.+|+.+||+|+.+++++++ +...+.+++.+ .+.+|..+
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 4668899999999999999876433 34455556555 35456544
Q ss_pred CCCcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHH---hC-CCCEEEEEecCCCchHHHHHH---
Q 020236 154 YNDGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKS---IK-PAIRILAAEPIGANDAAQSKA--- 222 (329)
Q Consensus 154 ~~n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~---~~-~~~~vi~v~~~~~~~~~~~~~--- 222 (329)
+++.....|+.++++||++|++ .||+||+|+|+||+++|++.+|.. .+ +.+|||+|||.+|+++++++.
T Consensus 227 s~~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~ 306 (427)
T PRK12391 227 SVLNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYD 306 (427)
T ss_pred CCCcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccccc
Confidence 4444577899999999999996 599999999999999999997733 34 889999999999999876543
Q ss_pred cCC---eeecC----------CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHH
Q 020236 223 AGR---IITLL----------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIG 288 (329)
Q Consensus 223 ~g~---~~~~~----------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~a 288 (329)
.|+ .++.. .+.+.+.|+... ..+....+.+....+.+.|+|+|+++++++|+++|||+++|+||++
T Consensus 307 ~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~a 386 (427)
T PRK12391 307 FGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHA 386 (427)
T ss_pred ccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHH
Confidence 221 11111 112233344321 2223333445555688999999999999999999999999999999
Q ss_pred HHHHhccccccCCC-CCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 289 LAAVLSDGFRKNPA-WQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 289 laa~~~~~~~~~~~-~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
+++++++ +++.. .+++++||+++|| |++|++.+.+.++
T Consensus 387 laaa~~~--a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~~l~ 426 (427)
T PRK12391 387 IAAAIDE--ALKAKEEGEEKVILFNLSGHGLLDLAAYDAYLA 426 (427)
T ss_pred HHHHHHH--HHhccccCCCCEEEEEeCCCCCCCHHHHHHHhc
Confidence 9999987 33322 2357899999999 9999999988764
No 70
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=9.6e-54 Score=395.28 Aligned_cols=298 Identities=18% Similarity=0.204 Sum_probs=244.8
Q ss_pred HhccccCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEEEEC--CchHHHHHHHHHH
Q 020236 21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVVTHS--SGNHAAALSLAAK 96 (329)
Q Consensus 21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv~~s--sGN~g~a~A~~a~ 96 (329)
++...+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++..+.++ +.++||++| +||||.|+|++|+
T Consensus 8 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~-g~~~vvt~g~s~gN~g~alA~~a~ 86 (331)
T PRK03910 8 RLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQ-GADTLITAGAIQSNHARQTAAAAA 86 (331)
T ss_pred CccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHc-CCCEEEEcCcchhHHHHHHHHHHH
Confidence 45678899999999999988899999999999997 699999999999987544 567788764 5899999999999
Q ss_pred HcCCCEEEEEcCCCCH--------HHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHHcC--CEeeCCCCCccccccc
Q 020236 97 LRGIPAYIVIPKNAPK--------CKVENVVRYGGQVIWSEAT---MHSRESVASKVLEETG--AVLVHPYNDGRIISGQ 163 (329)
Q Consensus 97 ~~G~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~~~--~~~~~~~~n~~~~~g~ 163 (329)
.+|++|++|||+..++ .++..++.+||+|+.++.+ .+.+.+.++++.++.+ +++.+++.|+....|+
T Consensus 87 ~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g~ 166 (331)
T PRK03910 87 KLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALGALGY 166 (331)
T ss_pred HhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchhHHHH
Confidence 9999999999998775 4568999999999999875 2234455666666543 3345677889888999
Q ss_pred CcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccc
Q 020236 164 GTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGL 239 (329)
Q Consensus 164 ~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl 239 (329)
.+++.||++|++ +||+||+|+|||||++|++.+|++.+|++++|||||.+++.+..+.. .....++++++
T Consensus 167 ~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~------~~~~~~~a~~~ 240 (331)
T PRK03910 167 VACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKV------AKLAQATAELL 240 (331)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHH------HHHHHHHHHHc
Confidence 999999999997 69999999999999999999999999999999999999876543311 11123444555
Q ss_pred ccC--CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCC
Q 020236 240 RAF--LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG 316 (329)
Q Consensus 240 ~~~--~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg 316 (329)
+.+ .++..+.+.+++.|+.+.|+|+|++++++++++++||++||+ ||+++++++++ .+++.+.++++||+|||||
T Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~--~~~~~~~~~~~Vv~i~tGG 318 (331)
T PRK03910 241 GLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDL--IRQGRFKKGGNVLFIHTGG 318 (331)
T ss_pred CCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH--HHcCCCCCCCeEEEEECCC
Confidence 432 344555667889999999999999999999999999999996 99999999987 5555555678999999999
Q ss_pred CCChHHHHHhh
Q 020236 317 NVDLGVLWDSF 327 (329)
Q Consensus 317 ~~~~~~~~~~~ 327 (329)
+.++--+.+.+
T Consensus 319 ~~~~~~~~~~~ 329 (331)
T PRK03910 319 APALFAYADAF 329 (331)
T ss_pred hHhhhhhhhhh
Confidence 98877776544
No 71
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.9e-52 Score=407.59 Aligned_cols=306 Identities=21% Similarity=0.278 Sum_probs=246.5
Q ss_pred HHHHhccccC-CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHH
Q 020236 18 AQKRISLYIH-KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAK 96 (329)
Q Consensus 18 ~~~~~~~~i~-~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~ 96 (329)
...-+..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+..++..+.+.+..+.|+++|+||||+|+|++|+
T Consensus 260 ~~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa 339 (610)
T PRK13803 260 FKRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACA 339 (610)
T ss_pred HHHHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHH
Confidence 3333345666 899999999999889999999999999999999999999887755433334556899999999999999
Q ss_pred HcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHH-HHHHHHHH-cCCEeeCCC-C--Ccc--c-ccc
Q 020236 97 LRGIPAYIVIPKNA---PKCKVENVVRYGGQVIWSEA---TMHSRES-VASKVLEE-TGAVLVHPY-N--DGR--I-ISG 162 (329)
Q Consensus 97 ~~G~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~---~~~~~~~-~a~~~~~~-~~~~~~~~~-~--n~~--~-~~g 162 (329)
.+|++|+||||+.. +..++.+|+.+||+|+.++. ++.++.+ ..+++..+ .+.+|++++ . +|+ . ..|
T Consensus 340 ~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~ 419 (610)
T PRK13803 340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYF 419 (610)
T ss_pred HcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHH
Confidence 99999999999874 35678899999999999984 4555543 34444333 456666543 2 333 2 358
Q ss_pred cCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc----hHHHHHHcCCeee-----
Q 020236 163 QGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN----DAAQSKAAGRIIT----- 228 (329)
Q Consensus 163 ~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~----~~~~~~~~g~~~~----- 228 (329)
+++++.||++|++ .||+||+|+||||+++|++.+|++ .|++++|||||.++. ....++..|.+..
T Consensus 420 ~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~ 498 (610)
T PRK13803 420 QSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSM 498 (610)
T ss_pred hhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccce
Confidence 9999999999985 599999999999999999999964 789999999999862 2344566665421
Q ss_pred ----------cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcccc
Q 020236 229 ----------LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGF 297 (329)
Q Consensus 229 ----------~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~ 297 (329)
....++++.|++.+ +++..+.+.....++.+.|+|+|+++++++|++.|||+++++||+++|+++++
T Consensus 499 ~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~-- 576 (610)
T PRK13803 499 TYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEG-- 576 (610)
T ss_pred eeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHh--
Confidence 23467899999875 77777777676777899999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 298 RKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 298 ~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
+.. +.++++||+++|| |++|.+++.+.+.
T Consensus 577 ~~~--~~~~~~Vvv~lsG~G~kd~~~~~~~~~ 606 (610)
T PRK13803 577 RKK--FKKKDIVIVNLSGRGDKDIPTLKEYFE 606 (610)
T ss_pred chh--cCCCCeEEEEeCCCCcCCHHHHHHHHh
Confidence 332 4468899999999 9999999988765
No 72
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.5e-51 Score=404.10 Aligned_cols=302 Identities=18% Similarity=0.180 Sum_probs=241.2
Q ss_pred HhccccC-CCCCccchhhhhh----cC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHH
Q 020236 21 RISLYIH-KTPVLSSETLNSM----SG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSL 93 (329)
Q Consensus 21 ~~~~~i~-~TPl~~~~~l~~~----~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~ 93 (329)
-+.+++| +|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.+..+.|+++|+||||+|+|+
T Consensus 318 ~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~ 397 (695)
T PRK13802 318 LNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATAT 397 (695)
T ss_pred HHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHH
Confidence 3357898 9999999998753 44 799999999999999999999999998876666667889999999999999
Q ss_pred HHHHcCCCEEEEEcCC---CCHHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHHHHH-c-CCEeeCCCCCc--c---c
Q 020236 94 AAKLRGIPAYIVIPKN---APKCKVENVVRYGGQVIWSEA---TMHSRESVA-SKVLEE-T-GAVLVHPYNDG--R---I 159 (329)
Q Consensus 94 ~a~~~G~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a-~~~~~~-~-~~~~~~~~~n~--~---~ 159 (329)
+|+++|++|+||||+. .+..|+.+|+.+||+|+.++. +++++.+.+ ++++++ . .+|+++++.|+ + .
T Consensus 398 aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v 477 (695)
T PRK13802 398 VCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMV 477 (695)
T ss_pred HHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHH
Confidence 9999999999999985 367899999999999999984 456664444 556665 3 45778888654 2 4
Q ss_pred ccccCcchHHHHhhCC------CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHH----HHHc--CC--
Q 020236 160 ISGQGTISLEFLEQVP------LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQ----SKAA--GR-- 225 (329)
Q Consensus 160 ~~g~~t~~~Ei~~ql~------~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~----~~~~--g~-- 225 (329)
.+|++++|.||++|+. .||+||+|+|+||+++|++.+|+. .|.+|+|||||.++.+... .+.. |.
T Consensus 478 ~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g 556 (695)
T PRK13802 478 RDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELG 556 (695)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCcc
Confidence 5899999999999984 599999999999999999999976 6899999999998743211 1111 22
Q ss_pred -----eeec--------CCCCccccccccC-CCcccHHHHhhcCCcE--EEeCHHHHHHHHHHHHHHcCceeCcchHHHH
Q 020236 226 -----IITL--------LETNTVADGLRAF-LGDLTWPIVRDLVDDV--ITVEDKEIIEAMKLCYEILKVAVEPSGAIGL 289 (329)
Q Consensus 226 -----~~~~--------~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~--~~V~d~e~~~a~~~l~~~egi~~~pssa~al 289 (329)
.... ...++++.||+.+ +++..-. ....+++ +.|+|+|+++++++|++.|||+++|+||+|+
T Consensus 557 ~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~--l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAv 634 (695)
T PRK13802 557 MFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAW--LKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAV 634 (695)
T ss_pred ccccceeecccCCCCCccCccccccccCCCCCCchhHH--HHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHH
Confidence 1111 1236888899864 6654432 2345555 8999999999999999999999999999999
Q ss_pred HHHhccccccCCCC-C-CCCeEEEEeCC-CCCChHHHHHhh
Q 020236 290 AAVLSDGFRKNPAW-Q-DSKKIGIVLSG-GNVDLGVLWDSF 327 (329)
Q Consensus 290 aa~~~~~~~~~~~~-~-~~~~vv~v~tg-g~~~~~~~~~~~ 327 (329)
++++++ +++... . ++++||+++|| |.+|++++.+.+
T Consensus 635 a~a~~~--a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~~~~ 673 (695)
T PRK13802 635 AGAYKA--AADLKAKGYEHPVMIVNISGRGDKDMNTAGKWF 673 (695)
T ss_pred HHHHHH--HHhcccccCCCCEEEEEECCCCcCCHHHHHHHh
Confidence 999987 443211 1 25699999999 899999998865
No 73
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-52 Score=357.42 Aligned_cols=298 Identities=20% Similarity=0.257 Sum_probs=252.9
Q ss_pred ccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHcC
Q 020236 23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLRG 99 (329)
Q Consensus 23 ~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~G 99 (329)
...||+|||++++.|++..|++|+.|.|++||.||.|||.|.++++.|++.++ ...|++.|+||+|+++|..|+.+|
T Consensus 44 ~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~G 123 (391)
T KOG1481|consen 44 EGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALG 123 (391)
T ss_pred HHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcC
Confidence 35789999999999999999999999999999999999999999999976654 356999999999999999999999
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCEEEEECC----CHHHHHHHHHH----HHHHc---CCEeeCCCCCcc-cccccCcch
Q 020236 100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEA----TMHSRESVASK----VLEET---GAVLVHPYNDGR-IISGQGTIS 167 (329)
Q Consensus 100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~----~~~~~~~~a~~----~~~~~---~~~~~~~~~n~~-~~~g~~t~~ 167 (329)
++|+|+||++.+.+|.+.++.+||+|..|+. +.+.-...+++ ...+. ..+|.+||+|+. ...||.++|
T Consensus 124 yk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTG 203 (391)
T KOG1481|consen 124 YKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTG 203 (391)
T ss_pred cceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcC
Confidence 9999999999999999999999999998876 22333333444 33332 247889999988 468999999
Q ss_pred HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCC-CEEEEEecCCCchHHHHHHcC---------CeeecCCCCccc
Q 020236 168 LEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPA-IRILAAEPIGANDAAQSKAAG---------RIITLLETNTVA 236 (329)
Q Consensus 168 ~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~-~~vi~v~~~~~~~~~~~~~~g---------~~~~~~~~~t~~ 236 (329)
+|||.|.+ .+|+|++++|||||++|+.+++|+..+. +.++..+|.++. +|.-...| -..+....+||.
T Consensus 204 PEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSG-lYnkV~~GVmy~~~e~eG~r~r~q~dti~ 282 (391)
T KOG1481|consen 204 PEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSG-LYNKVNYGVMYDHIETEGTRRRNQVDTIT 282 (391)
T ss_pred cHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCc-hhhhhhhhhhhhhhhhcCcccCCCcchhh
Confidence 99999998 8999999999999999999999999876 889999999984 33332222 111223578999
Q ss_pred cccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-
Q 020236 237 DGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG- 315 (329)
Q Consensus 237 ~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg- 315 (329)
+|++...-..++...++++|+.+.|+|++++++.+.|..++|++++.||+.+..|+.++ ++. ++++.+||+++|+
T Consensus 283 EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~v--Ak~--LgpG~~iVtilCDs 358 (391)
T KOG1481|consen 283 EGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRV--AKT--LGPGHTIVTILCDS 358 (391)
T ss_pred hcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHH--HHh--cCCCceEEEEEeCC
Confidence 99987633456777889999999999999999999999999999999999999999987 443 5699999999998
Q ss_pred CCCChHHHHH
Q 020236 316 GNVDLGVLWD 325 (329)
Q Consensus 316 g~~~~~~~~~ 325 (329)
|.++++.++.
T Consensus 359 G~rh~sk~~~ 368 (391)
T KOG1481|consen 359 GSRHLSKLFS 368 (391)
T ss_pred cchHHHHhcC
Confidence 8999988764
No 74
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=7e-52 Score=380.31 Aligned_cols=282 Identities=19% Similarity=0.177 Sum_probs=229.5
Q ss_pred cCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHHHHHHHcCCC
Q 020236 26 IHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALSLAAKLRGIP 101 (329)
Q Consensus 26 i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A~~a~~~G~~ 101 (329)
..+|||+++++|+...|.+||+|+|++||+ ||||||++.+++..+.+ .+.++||++ |+||||+|+|++|+.+|++
T Consensus 5 ~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~-~g~~~vv~~g~ssGN~g~alA~~a~~~G~~ 83 (311)
T TIGR01275 5 PWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALS-KGADTVITVGAIQSNHARATALAAKKLGLD 83 (311)
T ss_pred CCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHH-cCCCEEEEcCCchhHHHHHHHHHHHHhCCc
Confidence 469999999999988889999999999998 99999999999998754 466789997 6699999999999999999
Q ss_pred EEEEEcCCC-CHHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHH----c--CCEeeCCCCCcccccccCcchHHHHhh
Q 020236 102 AYIVIPKNA-PKCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEE----T--GAVLVHPYNDGRIISGQGTISLEFLEQ 173 (329)
Q Consensus 102 ~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~----~--~~~~~~~~~n~~~~~g~~t~~~Ei~~q 173 (329)
|++|||+.. +..+..+++.+||+|+.++. ++++..+.+++++++ . .+++++++.||....|+.++++||++|
T Consensus 84 ~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q 163 (311)
T TIGR01275 84 AVLVLREKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQ 163 (311)
T ss_pred eEEEecCCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999875 45667788999999999985 455555555555432 2 245567888999999998999999999
Q ss_pred CC---CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchH-HHHHHcCCeeecCCCCccccccccCCCcccHH
Q 020236 174 VP---LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDA-AQSKAAGRIITLLETNTVADGLRAFLGDLTWP 249 (329)
Q Consensus 174 l~---~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~-~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~ 249 (329)
++ +||+||+|+|||||++|++.+||+.+|+++||+|++..+.+. ...+ ....+++++++..+. ...++
T Consensus 164 ~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~-~~~~~ 235 (311)
T TIGR01275 164 LESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKF-------VNLVKEIAEGLEVKA-SEVIP 235 (311)
T ss_pred HhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHH-------HHHHHHHHHHhCCCC-CCCEE
Confidence 96 699999999999999999999999999999999998765322 1111 012345566665321 33455
Q ss_pred HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCC
Q 020236 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD 319 (329)
Q Consensus 250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~ 319 (329)
..+++.+..+.|+|+|++++++++++++|+++||+ ||+++++++++ .+++.+ ++++||++||||+.-
T Consensus 236 ~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~--~~~~~~-~~~~vv~i~tGG~~g 303 (311)
T TIGR01275 236 ELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDL--IRKGEL-GEKGILFIHTGGISG 303 (311)
T ss_pred EECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHH--HHhCCC-CCCCEEEEECCCccc
Confidence 66778889999999999999999999999999995 99999999886 444433 367899999999753
No 75
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=9.2e-52 Score=382.98 Aligned_cols=297 Identities=15% Similarity=0.134 Sum_probs=238.4
Q ss_pred HHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCC---CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHH
Q 020236 20 KRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKG---GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALS 92 (329)
Q Consensus 20 ~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~npt---GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A 92 (329)
.++...+++|||++++++++.+| .+||+|+|++||+ ||||||++.+++.++.+ .+..+|+++ |+||||+|+|
T Consensus 7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~-~G~~~vvs~G~s~GN~g~alA 85 (337)
T PRK12390 7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALA-QGADTLVSIGGVQSNHTRQVA 85 (337)
T ss_pred CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHH-cCCCEEEEeCCCccHHHHHHH
Confidence 34566789999999999998888 7999999999987 88899999999998854 466888887 8899999999
Q ss_pred HHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCHH----HHHHHHHHHHHH-cCCEe-eCCCC--C
Q 020236 93 LAAKLRGIPAYIVIPKNAP--------KCKVENVVRYGGQVIWSEATMH----SRESVASKVLEE-TGAVL-VHPYN--D 156 (329)
Q Consensus 93 ~~a~~~G~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~----~~~~~a~~~~~~-~~~~~-~~~~~--n 156 (329)
++|+.+|++|++|+|...+ ..+..+++.+||+|+.++.+++ ++.+.+.+..++ .+..| +..+. +
T Consensus 86 ~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (337)
T PRK12390 86 AVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDH 165 (337)
T ss_pred HHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCC
Confidence 9999999999999876544 2367789999999999988653 555566666555 44444 43332 2
Q ss_pred cccccccCcchHHHHhh---CC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCC
Q 020236 157 GRIISGQGTISLEFLEQ---VP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET 232 (329)
Q Consensus 157 ~~~~~g~~t~~~Ei~~q---l~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~ 232 (329)
+....|+.++++||++| ++ +||+||+|+|||||++|++.+||..+|++|||+|++.++++++.+- ... ..
T Consensus 166 ~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~----~~~--~~ 239 (337)
T PRK12390 166 PLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQ----VLR--IA 239 (337)
T ss_pred CcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHH----HHH--HH
Confidence 45667888899999998 44 6999999999999999999999999999999999999998775441 100 12
Q ss_pred CccccccccC--CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeE
Q 020236 233 NTVADGLRAF--LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKI 309 (329)
Q Consensus 233 ~t~~~gl~~~--~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~v 309 (329)
.+++++++.+ ..+..|.+..++.|+.|.|+|+|++++++++++++|+++||+ ||+++++++++ .+++.+.++++|
T Consensus 240 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~--~~~g~~~~~~~v 317 (337)
T PRK12390 240 RNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDL--VRKGEFPEGSKV 317 (337)
T ss_pred HHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHH--HhcCCCCCCCeE
Confidence 3444555432 222334556789999999999999999999999999999997 99999999987 777778889999
Q ss_pred EEEeCCCCCChHHHHH
Q 020236 310 GIVLSGGNVDLGVLWD 325 (329)
Q Consensus 310 v~v~tgg~~~~~~~~~ 325 (329)
|++||||-.-+..+.+
T Consensus 318 v~~htgg~~~~~~~~~ 333 (337)
T PRK12390 318 LYAHLGGVPALNAYSF 333 (337)
T ss_pred EEEeCCChHhhhcchh
Confidence 9999999544444433
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=2.4e-51 Score=380.00 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=240.9
Q ss_pred HHhccccCCCCCccchhhhhhcCC--eEEEEecCCCCC---CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHH
Q 020236 20 KRISLYIHKTPVLSSETLNSMSGR--SLFFKCECFQKG---GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALS 92 (329)
Q Consensus 20 ~~~~~~i~~TPl~~~~~l~~~~g~--~i~~K~E~~npt---GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A 92 (329)
.++...+++|||+++++|++.+|. +||+|+|++||+ ||||||++.+++..++ +.+..+|+++ |+||||+|+|
T Consensus 6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~-~~G~~~vvs~ggs~gN~g~alA 84 (337)
T TIGR01274 6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQ-AQGCTTLVSIGGIQSNQTRQVA 84 (337)
T ss_pred CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHH-HcCCCEEEECCCCcchHHHHHH
Confidence 455667899999999999988874 999999999986 7789999999999885 4467788876 7799999999
Q ss_pred HHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCHH----HHHHHHHHHHHHc-CC-EeeCCCC--C
Q 020236 93 LAAKLRGIPAYIVIPKNAP--------KCKVENVVRYGGQVIWSEATMH----SRESVASKVLEET-GA-VLVHPYN--D 156 (329)
Q Consensus 93 ~~a~~~G~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~----~~~~~a~~~~~~~-~~-~~~~~~~--n 156 (329)
++|+.+|++|++|+|+..+ ..|+.+++.+||+|+.++.+++ +....+.+..++. +. +++..+. |
T Consensus 85 ~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~ 164 (337)
T TIGR01274 85 AVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDH 164 (337)
T ss_pred HHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCC
Confidence 9999999999999998642 5799999999999999987653 3444444444443 33 5555442 4
Q ss_pred cccccccCcchHHHHhhC---C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCC
Q 020236 157 GRIISGQGTISLEFLEQV---P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET 232 (329)
Q Consensus 157 ~~~~~g~~t~~~Ei~~ql---~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~ 232 (329)
+....|+.++++||++|+ + +||+||+|+|||||++|++.+++...+++|||+||+.+++++..... .+..
T Consensus 165 ~~~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~------~~~~ 238 (337)
T TIGR01274 165 PLGGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQI------LRIA 238 (337)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHH------HHHH
Confidence 667788999999999995 3 69999999999999999999999999999999999999977643311 1112
Q ss_pred CccccccccC--CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeE
Q 020236 233 NTVADGLRAF--LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKI 309 (329)
Q Consensus 233 ~t~~~gl~~~--~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~v 309 (329)
.++++++... ..+..+.+..++.++.|.|+|+|++++++++++++|+++||+ ||++++|++++ .+++.+.++++|
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~--~~~g~~~~~~~v 316 (337)
T TIGR01274 239 RNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEM--IRRGEFKEGSNV 316 (337)
T ss_pred HHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHH--HhcCCCCCCCEE
Confidence 3455555542 111223455678899999999999999999999999999997 99999999987 677778889999
Q ss_pred EEEeCCCCCChHHHHHhh
Q 020236 310 GIVLSGGNVDLGVLWDSF 327 (329)
Q Consensus 310 v~v~tgg~~~~~~~~~~~ 327 (329)
|++||||...+-.+.+.+
T Consensus 317 v~~htGG~~~~~~~~~~~ 334 (337)
T TIGR01274 317 LYAHLGGAPALNAYSFLF 334 (337)
T ss_pred EEEeCCChhhhhhhHHHh
Confidence 999999987776666554
No 77
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.3e-51 Score=377.63 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=224.6
Q ss_pred CCCccchhhhhhc--CCeEEEEecCCCCC---CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHHHHHHHcCCC
Q 020236 29 TPVLSSETLNSMS--GRSLFFKCECFQKG---GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALSLAAKLRGIP 101 (329)
Q Consensus 29 TPl~~~~~l~~~~--g~~i~~K~E~~npt---GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A~~a~~~G~~ 101 (329)
|||+++++|++.+ +.+||+|+|++||+ ||||||++.+++..+.+ .+.+.|+++ |+||||+|+|++|+.+|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~-~g~~~vv~~ggs~GN~g~alA~~a~~~G~~ 79 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALA-KGADTLVTVGGIQSNHTRQVAAVAAKLGLK 79 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHH-cCCCEEEECCCchhHHHHHHHHHHHHcCCe
Confidence 8999999999877 57999999999999 56799999999998754 456788888 6899999999999999999
Q ss_pred EEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCHHH----HH-HHHHHHHHHcC-CEe-eCCC-CCcccccccCc
Q 020236 102 AYIVIPKNAP--------KCKVENVVRYGGQVIWSEATMHS----RE-SVASKVLEETG-AVL-VHPY-NDGRIISGQGT 165 (329)
Q Consensus 102 ~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~~----~~-~~a~~~~~~~~-~~~-~~~~-~n~~~~~g~~t 165 (329)
|++|||+..+ ..|+++++.+||+|+.++.++++ +. +.++++.++.+ .++ .+++ +||...+|+.+
T Consensus 80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~t 159 (307)
T cd06449 80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLGYVG 159 (307)
T ss_pred EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHHHHH
Confidence 9999999876 46899999999999999876432 12 22333333332 343 5555 49999999999
Q ss_pred chHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccccc
Q 020236 166 ISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA 241 (329)
Q Consensus 166 ~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~ 241 (329)
+++||++|++ .||+||+|+|||||++|++.+||+.+|.+|||+|+|.+++++..+.... ... .++ .+.+.
T Consensus 160 ~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~----~~~-~~~-~~~g~ 233 (307)
T cd06449 160 FVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLR----IAQ-AKL-AEEGL 233 (307)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHH----HHH-HHH-HHcCC
Confidence 9999999987 5999999999999999999999999999999999999998765431100 000 111 11111
Q ss_pred CCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCc-chHHHHHHHhccccccCCCCCCCCeEEEEeCCC
Q 020236 242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP-SGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG 316 (329)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~p-ssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg 316 (329)
+.+...+.+..++.|+.+.|+|+|++++++++++++|+++|| +||++++++.++ .+++.+.++++||++||||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~--~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 234 EVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDL--VRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred CCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHH--HhcCCCCCCCeEEEEeCCC
Confidence 112234455677899999999999999999999999999999 599999999987 6666667789999999998
No 78
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-50 Score=373.32 Aligned_cols=291 Identities=24% Similarity=0.294 Sum_probs=260.1
Q ss_pred CCCCCccchhhhhhcCC---eEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236 27 HKTPVLSSETLNSMSGR---SLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAY 103 (329)
Q Consensus 27 ~~TPl~~~~~l~~~~g~---~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~ 103 (329)
+.||+++.+++...++. ++|+|.|++|||||||||++..+++.+...++ .+|+++||||+|.|+|+++++.|++|+
T Consensus 75 g~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~ 153 (411)
T COG0498 75 GGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVF 153 (411)
T ss_pred ccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEE
Confidence 68999999888887873 59999999999999999999999998855544 899999999999999999999999999
Q ss_pred EEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CCCEE
Q 020236 104 IVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLDTI 180 (329)
Q Consensus 104 i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~d~v 180 (329)
|++|++ ++..|+.+|..+|++++.+++++|+|++.+++++++.++++.....||.+++|+.|+++||++|++ .||+|
T Consensus 154 Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~~~~~~~~~nsiNp~rlegq~t~~fe~~~ql~~~~p~~v 233 (411)
T COG0498 154 VLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHV 233 (411)
T ss_pred EEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHhhCCceeeccccCHHHhhhhhhhHhHHHHHhCCCCCCeE
Confidence 999999 999999999999999999999999999999999998787777777899999999999999999998 59999
Q ss_pred EEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHH---HH
Q 020236 181 IVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP---IV 251 (329)
Q Consensus 181 v~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~---~~ 251 (329)
++|+|+||++.|++.++++..| -++..+|+++++.++...++.++ +.+.|++++|.++.+.+..+ .+
T Consensus 234 ~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~----~~~~T~a~am~I~~p~n~~r~l~a~ 309 (411)
T COG0498 234 VVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR----ETPETIAPAMDIGNPSNWERALFAL 309 (411)
T ss_pred EEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccccc----ccccccccccccCCCCCHHHHHHHH
Confidence 9999999999999999999875 36889999999999988888775 45779999999864443333 33
Q ss_pred hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHH
Q 020236 252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWD 325 (329)
Q Consensus 252 ~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~ 325 (329)
++..+..+.|||+|++++++++++++|+++||+||++++++++. .++ .++++.++|++.|| |.++++.++.
T Consensus 310 ~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~--~~~-~i~~~~~vV~v~Tg~~~K~~~~v~~ 381 (411)
T COG0498 310 RESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKL--REK-IIDPDETVVLVLTGHGLKFPDTVEE 381 (411)
T ss_pred HhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHH--HHh-hcCCCCeEEEEecCCcccChhHHHh
Confidence 45567799999999999999999999999999999999999988 665 66788999999999 7899998765
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.7e-47 Score=350.75 Aligned_cols=287 Identities=17% Similarity=0.134 Sum_probs=219.8
Q ss_pred HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEE--EECCchHHHHHHH
Q 020236 18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVV--THSSGNHAAALSL 93 (329)
Q Consensus 18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv--~~ssGN~g~a~A~ 93 (329)
.++++....++|||++++++++..|.+||+|+|++||+ ||||||++.+++..+.++ +.++|+ ++|+||||+|+|+
T Consensus 11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~-G~~~vv~~~~ssGN~g~alA~ 89 (329)
T PRK14045 11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSR-GADVVITVGAVHSNHAFVTGL 89 (329)
T ss_pred cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHc-CCCEEEEeCccHHHHHHHHHH
Confidence 44677788899999999999988889999999999997 899999999999987544 556776 4899999999999
Q ss_pred HHHHcCCCEEEEEcCCCCHH-HHHHHHHcCCEEEEECC--C---HHHHHHHHHHHHHHc-CCEe-eCCCCCcccccccCc
Q 020236 94 AAKLRGIPAYIVIPKNAPKC-KVENVVRYGGQVIWSEA--T---MHSRESVASKVLEET-GAVL-VHPYNDGRIISGQGT 165 (329)
Q Consensus 94 ~a~~~G~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~--~---~~~~~~~a~~~~~~~-~~~~-~~~~~n~~~~~g~~t 165 (329)
+|+.+|++|++|+|...+.. +..+++.+||+++.++. + .+.+.+.++++.++. ..++ .+++.|+....|+.+
T Consensus 90 ~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~~ 169 (329)
T PRK14045 90 AAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYVR 169 (329)
T ss_pred HHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHH
Confidence 99999999999999875433 66678999999998863 2 234555666666554 3444 466778988888877
Q ss_pred chHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc-hHHHHHHcCCeeecCCCCccccccc
Q 020236 166 ISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN-DAAQSKAAGRIITLLETNTVADGLR 240 (329)
Q Consensus 166 ~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~-~~~~~~~~g~~~~~~~~~t~~~gl~ 240 (329)
...||++|++ ++|+||+|+|||||++|++.++|..+|++|||+|++.+.. .+.+.+...... .. -..|+.
T Consensus 170 ~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~----~~-~~~g~~ 244 (329)
T PRK14045 170 AVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKK----TK-ELLGVK 244 (329)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHH----HH-HHhCCC
Confidence 7779999986 6999999999999999999999999999999999997632 233222111000 00 001211
Q ss_pred cCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCc-chHHHHHHHhccccccCCCCCCCCeEEEEeCCCC
Q 020236 241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP-SGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN 317 (329)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~p-ssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~ 317 (329)
... ..+.+.+.+.|++..++ +|+++++++++++|||++|| +||+++++++++ .+++. .+++||+|||||-
T Consensus 245 ~~~--~~~~~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~--~~~~~--~~~~iv~ihtGG~ 315 (329)
T PRK14045 245 VKV--QEPELYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDL--AKKGE--LGEKILFIHTGGI 315 (329)
T ss_pred CCc--cceEecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHH--HHcCC--CCCCEEEEECCCc
Confidence 111 01112233446656666 79999999999999999999 899999999987 55543 2689999999984
No 80
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=7.8e-41 Score=317.31 Aligned_cols=301 Identities=12% Similarity=0.073 Sum_probs=249.1
Q ss_pred CCHHHHHHHHHHhccccC---CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHH---HHhcCchhccCCeEEEEC
Q 020236 10 ANFSSIKEAQKRISLYIH---KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN---AVLSLDEDQAIKGVVTHS 83 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~---~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~---~l~~a~~~~~~~~vv~~s 83 (329)
++.+++.++..+.+..+. .+||.++. .++|+...+++||||||||++.. ++.++.+ ++...|+++|
T Consensus 67 i~~~~l~~~i~~ay~~F~~~~~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~AT 138 (462)
T PRK09225 67 IPEDDLKAIIARAYTTFDHPAIAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGAT 138 (462)
T ss_pred CCHHHHHHHHHHHHhcCCCcCccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcC
Confidence 677788877776655333 46776653 26899999999999999999988 7777754 4578899999
Q ss_pred CchHHHHH-HHHHHHcCCCEEEEEcCC-CCHHHHHHHHHc-CCEE--EEECCCHHHHHHHHHHHHHH------cCCEeeC
Q 020236 84 SGNHAAAL-SLAAKLRGIPAYIVIPKN-APKCKVENVVRY-GGQV--IWSEATMHSRESVASKVLEE------TGAVLVH 152 (329)
Q Consensus 84 sGN~g~a~-A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~-Ga~v--~~~~~~~~~~~~~a~~~~~~------~~~~~~~ 152 (329)
|||+|.|+ +.++.+.|++|+|++|++ +|+.|+.+|..+ |++| +.+++++|+|++.++++.++ .+++-.|
T Consensus 139 SGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saN 218 (462)
T PRK09225 139 SGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSAN 218 (462)
T ss_pred CCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEe
Confidence 99999988 788999999999999997 999999999999 8976 79999999999999987654 3566677
Q ss_pred CCCCcccccccCcchHHHHhhCCC----CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeee
Q 020236 153 PYNDGRIISGQGTISLEFLEQVPL----LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIIT 228 (329)
Q Consensus 153 ~~~n~~~~~g~~t~~~Ei~~ql~~----~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~ 228 (329)
+. ||.+++|+.++++|+++|+.+ ||.|+||+|+||++.|.+.+.+...|-.|+|+++ ..++++++.+..|...+
T Consensus 219 Si-N~~Ri~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~ 296 (462)
T PRK09225 219 SI-NIGRLLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDP 296 (462)
T ss_pred cc-CHHHHHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCcc
Confidence 64 899999999999999999973 8999999999999999999955545777999998 55667889999987665
Q ss_pred cCCCCccccccccCCCcccHH------------H---Hh---hcCC---------------cEEEeCHHHHHHHHHHHHH
Q 020236 229 LLETNTVADGLRAFLGDLTWP------------I---VR---DLVD---------------DVITVEDKEIIEAMKLCYE 275 (329)
Q Consensus 229 ~~~~~t~~~gl~~~~~~~~~~------------~---~~---~~~~---------------~~~~V~d~e~~~a~~~l~~ 275 (329)
.+..+|++++|++..+.+..+ . ++ +..+ ..+.|+|+|+.++++++++
T Consensus 297 ~~~~~T~s~amdI~~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~ 376 (462)
T PRK09225 297 RPTVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYE 376 (462)
T ss_pred CCCCCCcCchhhcCCCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHH
Confidence 556789999999876665555 2 11 1222 6799999999999999999
Q ss_pred HcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhh
Q 020236 276 ILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSF 327 (329)
Q Consensus 276 ~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~ 327 (329)
++|+++||+||++++++.+. . .++.++|++.|+ |.++.+.+.+.+
T Consensus 377 ~~G~~~dPhtAva~aa~~~~--~-----~~~~~~V~l~Ta~p~Kf~~~v~~a~ 422 (462)
T PRK09225 377 EYGYLIDPHTAVAYKAAREY--L-----DPGEPGVVLSTAHPAKFPEVVEEAL 422 (462)
T ss_pred hCCEEECchHHHHHHHHHHh--h-----CCCCCEEEEecCCccCCHHHHHHhc
Confidence 99999999999999999764 2 256788999998 789999888764
No 81
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=1.3e-39 Score=309.29 Aligned_cols=304 Identities=14% Similarity=0.075 Sum_probs=246.5
Q ss_pred CCHHHHHHHHHHhccccC---CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHH---HhcCchh-ccCCeEEEE
Q 020236 10 ANFSSIKEAQKRISLYIH---KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA---VLSLDED-QAIKGVVTH 82 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~---~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~---l~~a~~~-~~~~~vv~~ 82 (329)
++-+++.++.++.+..+. .+||.++. .++|++..+++||||||||++..+ +.++.++ .+...|+++
T Consensus 66 i~~~~L~~~i~~ay~~F~~~~~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~A 138 (460)
T cd01560 66 IPEDDLKSLIDRAYSFFRHPDIAPLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVA 138 (460)
T ss_pred CCHHHHHHHHHHHHhcCCCCCccceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEc
Confidence 677777777766554332 36766654 278999999999999999999876 5555432 366789999
Q ss_pred CCchHHHH-HHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCC---EEEEECCCHHHHHHHHHHHHHH------cCCEee
Q 020236 83 SSGNHAAA-LSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGG---QVIWSEATMHSRESVASKVLEE------TGAVLV 151 (329)
Q Consensus 83 ssGN~g~a-~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~a~~~~~~------~~~~~~ 151 (329)
||||+|.| ++.++.+.|++|+|++|++ +|+.|+.+|..+|+ +++.+++++++|++.++++.++ .+++-.
T Consensus 139 TSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~l~sa 218 (460)
T cd01560 139 TSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSA 218 (460)
T ss_pred CCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcceEEEE
Confidence 99999999 4888999999999999997 99999999999997 8999999999999999887654 356666
Q ss_pred CCCCCcccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCe
Q 020236 152 HPYNDGRIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRI 226 (329)
Q Consensus 152 ~~~~n~~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~ 226 (329)
|+ .|+.+++++.++++|+++|+. .|+.|+||+|+||.+.|.+.+.+...|-.|+|+++..+ +.+++.+..|..
T Consensus 219 NS-iN~~Ri~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n-~il~~~~~~G~y 296 (460)
T cd01560 219 NS-INWARILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN-DVLRRFFKTGRY 296 (460)
T ss_pred ec-cCHHHHHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC-hHHHHHHHcCCC
Confidence 66 489999999999999999986 48999999999999999999977666878999976533 235557788865
Q ss_pred eec-CCCCccccccccCCCcccHHHHhhcC---C------------------------------cEEEeCHHHHHHHHHH
Q 020236 227 ITL-LETNTVADGLRAFLGDLTWPIVRDLV---D------------------------------DVITVEDKEIIEAMKL 272 (329)
Q Consensus 227 ~~~-~~~~t~~~gl~~~~~~~~~~~~~~~~---~------------------------------~~~~V~d~e~~~a~~~ 272 (329)
... +..+|++++|++..+.+..++++... + ..+.|+|+|+.+++++
T Consensus 297 ~~~~~~~~T~spamdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~ 376 (460)
T cd01560 297 DRRESLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIRE 376 (460)
T ss_pred cCCCCCCCCcCchhhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHH
Confidence 444 46789999999876666666665322 1 5689999999999999
Q ss_pred HHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 273 CYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 273 l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
+++++|+++||+||++++++.+. .++ ++..+|++.|+ +.++.+.+.+.+.
T Consensus 377 ~~~~~G~~vdPhtAva~aa~~~~--~~~----~~~~~V~l~Ta~p~Kf~~~v~~a~~ 427 (460)
T cd01560 377 VYEETGYLIDPHTAVGVRAAERV--RKS----PGTPGVVLSTAHPAKFPEAVKEALG 427 (460)
T ss_pred HHHhcCEEECchHHHHHHHHHHH--Hhc----cCCCEEEEecCCcccCHHHHHHhhC
Confidence 99999999999999999999875 332 34678999998 7899998887653
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=277.44 Aligned_cols=302 Identities=20% Similarity=0.223 Sum_probs=234.6
Q ss_pred hccccC-CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236 22 ISLYIH-KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI 100 (329)
Q Consensus 22 ~~~~i~-~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 100 (329)
+.++.| +|||...++|++.+|.+||+|+|++|.||++|...+...+.-|.+-++.+.|.+...|.||.|.|.+|+++|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl 128 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGL 128 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCC
Confidence 344554 8999999999999999999999999999999999999888877666566667777889999999999999999
Q ss_pred CEEEEEcCCC---CHHHHHHHHHcCCEEEEECCC---HHHHHHH-HHHHHHH-cCCEeeCCC---CCcc---cccccCcc
Q 020236 101 PAYIVIPKNA---PKCKVENVVRYGGQVIWSEAT---MHSRESV-ASKVLEE-TGAVLVHPY---NDGR---IISGQGTI 166 (329)
Q Consensus 101 ~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~-a~~~~~~-~~~~~~~~~---~n~~---~~~g~~t~ 166 (329)
+|+|||-... ...++-.|+.+||+|+.|... ..++... .+.+... ...+|+-.. .+|+ ...-++.+
T Consensus 129 ~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vI 208 (396)
T COG0133 129 ECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVI 208 (396)
T ss_pred ceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHH
Confidence 9999997542 345677899999999999753 4444443 4445554 345555321 2343 23457889
Q ss_pred hHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc----hHHHHHHcCCe-----------
Q 020236 167 SLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN----DAAQSKAAGRI----------- 226 (329)
Q Consensus 167 ~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~----~~~~~~~~g~~----------- 226 (329)
+.|.-+|+- -||+|+.|+|+|++..|+...|.. .+++++||||+.+.. .-..++..|++
T Consensus 209 G~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyll 287 (396)
T COG0133 209 GEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLL 287 (396)
T ss_pred hHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceee
Confidence 999888853 399999999999999999988754 378999999988731 11112333332
Q ss_pred ----eecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCC
Q 020236 227 ----ITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNP 301 (329)
Q Consensus 227 ----~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~ 301 (329)
.++...++|+.||+.+ +|+.+-.+...-....+.|+|+|+++|.+.|.+.|||+.-..|+.|+|.++++ ++..
T Consensus 288 Qd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kl--a~~~ 365 (396)
T COG0133 288 QDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKL--APKL 365 (396)
T ss_pred EcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHh--chhc
Confidence 1223478899999975 88876555555556788999999999999999999999999999999999987 5443
Q ss_pred CCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 302 AWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 302 ~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
.+++.||+.+|| |++|..++.+.++
T Consensus 366 --~~~~~ivvnlSGRGDKDv~tv~~~l~ 391 (396)
T COG0133 366 --PKDEIIVVNLSGRGDKDVFTVAKLLG 391 (396)
T ss_pred --CCCcEEEEEccCCCcccHHHHHHHhh
Confidence 366788888999 8999999988764
No 83
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=257.44 Aligned_cols=291 Identities=17% Similarity=0.210 Sum_probs=229.4
Q ss_pred HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHHHH
Q 020236 19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALSLA 94 (329)
Q Consensus 19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A~~ 94 (329)
++|+....++||+.+++++++++|.+||+|+||..+. |.+|.|+..+++.++.. ++.+++|++ ..+||.+++|++
T Consensus 6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~-~g~dTlvT~GgiQSNh~r~tAav 84 (323)
T COG2515 6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALR-KGADTLVTYGGIQSNHVRQTAAV 84 (323)
T ss_pred CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhh-cCCcEEEEecccchhHHHHHHHH
Confidence 3456667789999999999999999999999999654 99999999999998854 478899986 559999999999
Q ss_pred HHHcCCCEEEEEcCCC----CHHHHHHHHHcCCEEEEECCCHHH-----HHHHHHHHHHHcC--CEeeCCCCCccccccc
Q 020236 95 AKLRGIPAYIVIPKNA----PKCKVENVVRYGGQVIWSEATMHS-----RESVASKVLEETG--AVLVHPYNDGRIISGQ 163 (329)
Q Consensus 95 a~~~G~~~~i~~p~~~----~~~~~~~~~~~Ga~v~~~~~~~~~-----~~~~a~~~~~~~~--~~~~~~~~n~~~~~g~ 163 (329)
|+++|++|+.++.... ...++...+.+|+++..++...+- ..+.++++.++.+ +..+.+..||....||
T Consensus 85 A~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGy 164 (323)
T COG2515 85 AAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLGALGY 164 (323)
T ss_pred HHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccccccH
Confidence 9999999999996543 234677778899999999874322 2233344444433 3334445688899999
Q ss_pred CcchHHHHhhCC---CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccc
Q 020236 164 GTISLEFLEQVP---LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR 240 (329)
Q Consensus 164 ~t~~~Ei~~ql~---~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~ 240 (329)
...+.||.+|+. ++|.||+++|||||.+|+..++....++.+|||+...+.+..... . ...+ ..+.++-++
T Consensus 165 v~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~---q-v~~L--~~~~a~~~~ 238 (323)
T COG2515 165 VRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKE---Q-VLNL--AQATAELLG 238 (323)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHH---H-HHHH--HHHHHHHcC
Confidence 999999999987 699999999999999999999999999999999998877543211 1 0000 011111122
Q ss_pred cCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCC
Q 020236 241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD 319 (329)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~ 319 (329)
.. ....|....+|....|++..+|.+++++.+++.|||..||. ++++++++++. .+++.++.+..|+++|+||-.-
T Consensus 239 ~~-~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~--~~k~~f~~~~~vLfiHtGG~~g 315 (323)
T COG2515 239 LG-SEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDL--ARKGEFPDGSPVLFIHTGGAPG 315 (323)
T ss_pred CC-CCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHH--HhcccCCCCCceEEEEcCCccc
Confidence 11 23334455678889999999999999999999999999999 99999999998 7888888889999999998543
No 84
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-35 Score=257.31 Aligned_cols=314 Identities=16% Similarity=0.172 Sum_probs=235.9
Q ss_pred CCHHHHHHHHHHhcccc-CCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCch
Q 020236 10 ANFSSIKEAQKRISLYI-HKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGN 86 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~i-~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN 86 (329)
..++|+++.+..++.++ .+|||++.++|.+.++ .+||+|+|++||+||+|...+...+..+.+.++++.|.+...|.
T Consensus 103 ~~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQ 182 (477)
T KOG1395|consen 103 ERDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQ 182 (477)
T ss_pred hccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCc
Confidence 45677888888887655 5999999999998775 89999999999999999999999888876665556666678899
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCC---CCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHH-HHHH-cCCEeeC-CCC--
Q 020236 87 HAAALSLAAKLRGIPAYIVIPKN---APKCKVENVVRYGGQVIWSEAT---MHSRESVASK-VLEE-TGAVLVH-PYN-- 155 (329)
Q Consensus 87 ~g~a~A~~a~~~G~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~-~~~~-~~~~~~~-~~~-- 155 (329)
||.|+|.+|+++|++|+|+|-.. ....++-+||.+||+|+.+... ..++-..+-+ +... .-..|+. +-.
T Consensus 183 hGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gp 262 (477)
T KOG1395|consen 183 HGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGP 262 (477)
T ss_pred cchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCC
Confidence 99999999999999999999654 3456788999999999999763 2222222222 2222 1223332 212
Q ss_pred Cccc---ccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC----chHHHHHHc
Q 020236 156 DGRI---ISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA----NDAAQSKAA 223 (329)
Q Consensus 156 n~~~---~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~----~~~~~~~~~ 223 (329)
+|+. -.=+.+++-|-..|.- .||.||.|+|+|++.+|+..-|..- ..++.++|+..+. +.....+..
T Consensus 263 hp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatlta 341 (477)
T KOG1395|consen 263 HPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTA 341 (477)
T ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeec
Confidence 2221 1335677777665532 4999999999999999999888653 3578888876652 222222333
Q ss_pred CCe---------------eecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHH
Q 020236 224 GRI---------------ITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAI 287 (329)
Q Consensus 224 g~~---------------~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~ 287 (329)
|++ ...-.+++|..||+.+ +++..-.+...-..+++.++|.|++++.+.+++.|||+.-|.+..
T Consensus 342 gd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssH 421 (477)
T KOG1395|consen 342 GDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSH 421 (477)
T ss_pred ccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhh
Confidence 322 1112478899999875 777766666666778999999999999999999999999999999
Q ss_pred HHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 288 GLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 288 alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
|+++..++ .+. +++++.||+.+|| |.+|+..+.+.|.
T Consensus 422 Ava~~~~l--ck~--l~~~k~ivi~~sGrGdkDvqS~~kyL~ 459 (477)
T KOG1395|consen 422 AVAGEAEL--CKT--LPEDKVIVINISGRGDKDVQSVAKYLP 459 (477)
T ss_pred HHHHHHHh--ccc--cCCCcEEEEEecCCCCchHHHHHHhcc
Confidence 99997765 443 4689999999999 9999999988775
No 85
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=238.45 Aligned_cols=301 Identities=22% Similarity=0.260 Sum_probs=222.6
Q ss_pred CCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEE
Q 020236 27 HKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYI 104 (329)
Q Consensus 27 ~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i 104 (329)
.+|||+|..+|.+.+| .+||+|.|+..||||||...|.....++..++-.+.+.+...|.+|.|++.+|+.+|++|+|
T Consensus 77 RPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~~V 156 (432)
T COG1350 77 RPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKATV 156 (432)
T ss_pred CCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCceeEE
Confidence 5999999999999887 89999999999999999999999999886654444444467799999999999999999999
Q ss_pred EEcCC---CCHHHHHHHHHcCCEEEEECCCHHH------------------HHHHHHHHHHH-cCCEeeCCCCCcccccc
Q 020236 105 VIPKN---APKCKVENVVRYGGQVIWSEATMHS------------------RESVASKVLEE-TGAVLVHPYNDGRIISG 162 (329)
Q Consensus 105 ~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~~------------------~~~~a~~~~~~-~~~~~~~~~~n~~~~~g 162 (329)
||-+. ..+.++.+|+.+||+|+..|.+.-+ +...|-+.+-+ .+..|.-..--...+.|
T Consensus 157 ~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhvllh 236 (432)
T COG1350 157 FMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHVLLH 236 (432)
T ss_pred EEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHHHHH
Confidence 99664 4567888999999999988764322 23333333333 22334332111236788
Q ss_pred cCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHh---C-CCCEEEEEecCCCchHHHHHHc---C---Ceee
Q 020236 163 QGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSI---K-PAIRILAAEPIGANDAAQSKAA---G---RIIT 228 (329)
Q Consensus 163 ~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~---~-~~~~vi~v~~~~~~~~~~~~~~---g---~~~~ 228 (329)
+..+|.|.-+|+. .||+++-|||+|++++|+..-|-.. + ...++|+|+|..|+.+.+.... + ...+
T Consensus 237 QTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltP 316 (432)
T COG1350 237 QTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTP 316 (432)
T ss_pred HHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccch
Confidence 9999999966654 5999999999999999998776332 1 2389999999999876543211 1 1111
Q ss_pred cCCCCc----------cccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcccc
Q 020236 229 LLETNT----------VADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGF 297 (329)
Q Consensus 229 ~~~~~t----------~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~ 297 (329)
+-...| -+.||+.- ..+..--+...-+-+....+++|++++.+.|++.|||+.-|.|+.|+.++++.++
T Consensus 317 llKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~ 396 (432)
T COG1350 317 LLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEAL 396 (432)
T ss_pred hhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHH
Confidence 112222 22344431 2232223345566688899999999999999999999999999999999998843
Q ss_pred ccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236 298 RKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR 328 (329)
Q Consensus 298 ~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~ 328 (329)
..+ ..++.++|++.+|| |-.|++.|.+.++
T Consensus 397 ~a~-~~geekvI~fnlSGHGllDL~~Y~~yl~ 427 (432)
T COG1350 397 KAR-EEGEEKVILFNLSGHGLLDLSAYDKYLE 427 (432)
T ss_pred hcc-ccCceeEEEEeccCccccchhhHHHHhh
Confidence 322 23456788999999 8899999998875
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.94 E-value=6.4e-26 Score=196.91 Aligned_cols=319 Identities=18% Similarity=0.173 Sum_probs=250.2
Q ss_pred CCHHHHHHHHHHhc----------------cccCCCCCccchhhh----hhc----CCeEEEEecCCCCC-CccchhhHH
Q 020236 10 ANFSSIKEAQKRIS----------------LYIHKTPVLSSETLN----SMS----GRSLFFKCECFQKG-GAFKFRGAS 64 (329)
Q Consensus 10 ~~~~~~~~~~~~~~----------------~~i~~TPl~~~~~l~----~~~----g~~i~~K~E~~npt-GS~KdR~a~ 64 (329)
+.-.|+.++.+|+. ..|-.+||+.++.+. +++ ..++|+|++++-|- ||+|.|+-.
T Consensus 44 l~~~dv~dA~~Rl~RFAPyiak~FPeT~~~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGI 123 (443)
T COG3048 44 LTEQDVQDAEARLQRFAPYIAKAFPETAATGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGI 123 (443)
T ss_pred CchhHHHHHHHHHHHhhHHHHHhCccccccCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccH
Confidence 45566666665553 234578999987743 333 25899999999995 999999987
Q ss_pred HHHhc-Cc----hhc--------------------cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH
Q 020236 65 NAVLS-LD----EDQ--------------------AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV 119 (329)
Q Consensus 65 ~~l~~-a~----~~~--------------------~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~ 119 (329)
|-+.. |+ +.+ ..-.|.+.|+||.|.++...++.+|+++++-|..++.+.|.+.+|
T Consensus 124 YEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LR 203 (443)
T COG3048 124 YEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLR 203 (443)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHH
Confidence 76553 21 111 023588899999999999999999999999999999999999999
Q ss_pred HcCCEEEEECCCHHHHHHHHHHHHHH-cCCEeeCCCCCcccccccCcchHHHHhhCC---------CCCEEEEeCCCChH
Q 020236 120 RYGGQVIWSEATMHSRESVASKVLEE-TGAVLVHPYNDGRIISGQGTISLEFLEQVP---------LLDTIIVPISGGGL 189 (329)
Q Consensus 120 ~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~---------~~d~vv~~~GtGg~ 189 (329)
..|.+|+..+.||..+.+.-++-++. +..||++.-++.....||...+..+-.|+. .|-.|..|+|-||.
T Consensus 204 s~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiDDE~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGg 283 (443)
T COG3048 204 SHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFIDDENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGG 283 (443)
T ss_pred hcCceEEEecchhhHHHHHhhhhhccCCceEEecccchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCC
Confidence 99999999999999998888887766 578888875555567899999999988875 26689999999999
Q ss_pred HHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhhcCCcEEEe
Q 020236 190 ISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITV 261 (329)
Q Consensus 190 ~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V 261 (329)
-.|++.++|..+ .++.++-+||..+|||.-.+..|....+. ...|-++|+..+ ++...-+.+++..+..++|
T Consensus 284 PGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~Tv 363 (443)
T COG3048 284 PGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTV 363 (443)
T ss_pred cchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEe
Confidence 999999999986 78999999999999999888887433221 355778898876 4455566788999999999
Q ss_pred CHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC------C---CCCCCCeEEEEeCCCC-CChHHHHHhhh
Q 020236 262 EDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN------P---AWQDSKKIGIVLSGGN-VDLGVLWDSFR 328 (329)
Q Consensus 262 ~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~------~---~~~~~~~vv~v~tgg~-~~~~~~~~~~~ 328 (329)
+|+..++..++|++.||+.++||+-+++++-.+.--... + .--.+.+.++.-|||. +.-+..+..++
T Consensus 364 dD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MVPeeeM~~yl~ 440 (443)
T COG3048 364 DDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMVPEEEMEAYLA 440 (443)
T ss_pred chHHHHHHHHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcCCHHHHHHHHh
Confidence 999999999999999999999998888887666510010 0 1113568889999864 55555665554
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.011 Score=50.31 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=67.5
Q ss_pred HhC-CCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccCCCcccHHHHhhc----------------------
Q 020236 199 SIK-PAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAFLGDLTWPIVRDL---------------------- 254 (329)
Q Consensus 199 ~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~~~~~~~~~~~~~---------------------- 254 (329)
.++ |.-+++.....+ +-+++.++.|+....+ ...|+++.|++-++.++.+.++-.
T Consensus 55 kmGlPirklviAtNeN-dIl~rf~ktG~yelsekvaaT~spamDIlvssN~ER~lwlla~~d~qi~~~l~nefe~~~~~q 133 (266)
T KOG2616|consen 55 KMGLPIRKLVIATNEN-DILHRFVKTGDYELSEKVAATLSPAMDILVSSNFERVLWLLAGSDSQITRALMNEFERTGSVQ 133 (266)
T ss_pred HcCCchhheeeecccc-HHHHHHHHcCchhhhHHHHhhcCcchhhcccccHHHHHHHHhCChHHHHHHHHHHHhhCCcee
Confidence 444 544466555554 5689999999765433 345777777765554444433200
Q ss_pred -----------CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcc
Q 020236 255 -----------VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSD 295 (329)
Q Consensus 255 -----------~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~ 295 (329)
-.....||++|+.++++.+++..+++++|++|+++-...+.
T Consensus 134 v~kel~ekls~dftse~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~ 185 (266)
T KOG2616|consen 134 VPKELHEKLSEDFTSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQ 185 (266)
T ss_pred cCHHHHHHHHHhhhhhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHH
Confidence 01367899999999999999999999999999999887765
No 88
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=94.33 E-value=0.16 Score=42.35 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCCCEE-EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcc
Q 020236 88 AAALSLAAKLRGIPAY-IVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTI 166 (329)
Q Consensus 88 g~a~A~~a~~~G~~~~-i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~ 166 (329)
|..+.++++.+|.++. -+.+.+.-..-.+.+...|-.|.+++++.+...+.++.+.++....-+..+.++.. ...-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f---~~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF---DEEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC---Chhh
Confidence 5788999999998883 33333333455667777899999999988777777777777742222222223222 1223
Q ss_pred hHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236 167 SLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA 209 (329)
Q Consensus 167 ~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v 209 (329)
-.+|.+++. .||.|+++.|+.--=. .....+...+..-+++|
T Consensus 90 ~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 EEAIINRINASGPDIVFVGLGAPKQER-WIARHRQRLPAGVIIGV 133 (172)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEE
Confidence 345666665 6999999999964322 23334444444444444
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=90.33 E-value=1.6 Score=36.38 Aligned_cols=117 Identities=16% Similarity=0.059 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHH-cCCEeeCCCCCcccccccCc
Q 020236 88 AAALSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEE-TGAVLVHPYNDGRIISGQGT 165 (329)
Q Consensus 88 g~a~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~g~~t 165 (329)
|..+.++++.+|.+..--++.. .-..-.+.+...+..|.+++++.+...+.++.+.++ ++.-.+..++.+.....
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~--- 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEE--- 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhh---
Confidence 5788999999999832222221 123345556667899999998887777777777776 34333321121211111
Q ss_pred chHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236 166 ISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA 209 (329)
Q Consensus 166 ~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v 209 (329)
-.++.+++. .||.|+++.|+---=. .....+...+..-+++|
T Consensus 88 -~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 -EEEIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred -HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 123555555 6999999999964322 23334444444555555
No 90
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.07 E-value=39 Score=33.72 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=67.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
+.+++.+..|+.|+.+|..-+..|.+++++=+ .+.+.+.++..|..++.-|.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~~----------------------- 470 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAAN----------------------- 470 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCCC-----------------------
Confidence 46799999999999999998888988876643 2455666666666655543321
Q ss_pred CcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236 156 DGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE 210 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~ 210 (329)
.|++++.+ +.|.+++.++.-..-.-+....+..+|+.++++..
T Consensus 471 ------------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 471 ------------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred ------------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 24454444 67888888877555444555667778888888754
No 91
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=85.61 E-value=13 Score=32.03 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=33.9
Q ss_pred CCeEEEE-CCc---hHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCC
Q 020236 76 IKGVVTH-SSG---NHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGG 123 (329)
Q Consensus 76 ~~~vv~~-ssG---N~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga 123 (329)
.+.+|++ |.| .+.++||.||++-|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 3556655 444 36899999999999999999998754 234445554553
No 92
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.33 E-value=16 Score=37.09 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
..+++.+..|..|..+|..-+..|++++++ +.++.+.+.++..|.+++.-|.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat~----------------------- 453 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDATR----------------------- 453 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCCC-----------------------
Confidence 467999999999999999988889988776 233556666677776665544421
Q ss_pred CcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEec
Q 020236 156 DGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEP 211 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~ 211 (329)
.|++++.+ +.|.++++++.--.-.-+....|+.+|+.++++-..
T Consensus 454 ------------~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 454 ------------MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred ------------HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 24444443 567888888775555556677788888888877543
No 93
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=85.06 E-value=5.1 Score=36.22 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=62.6
Q ss_pred eEEEEecCCCC-----CCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcCC-CCHHHHH
Q 020236 44 SLFFKCECFQK-----GGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPKN-APKCKVE 116 (329)
Q Consensus 44 ~i~~K~E~~np-----tGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~~~~~~~ 116 (329)
+-++|.++.-| |-+.---.|+-|+.+..+-...+.||- +..+--|.++-..|+.+|++.+-++.+. ..++..+
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~ 203 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKK 203 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHH
Confidence 46677777554 455566677788887654334455555 4456677888888999999999888665 4456778
Q ss_pred HHHHcCCEEEEECC
Q 020236 117 NVVRYGGQVIWSEA 130 (329)
Q Consensus 117 ~~~~~Ga~v~~~~~ 130 (329)
+++.+||+.++.+.
T Consensus 204 ~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 204 QLKSLGATEVITEE 217 (354)
T ss_pred HHHHcCCceEecHH
Confidence 89999999998754
No 94
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.82 E-value=47 Score=33.56 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
..+++.+..|..|+.+|..-...|++++++=. .+.+.+.++..|..++.-|.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat~----------------------- 453 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDATQ----------------------- 453 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCCC-----------------------
Confidence 46799999999999999998889999877642 2556666666776665543321
Q ss_pred CcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCC
Q 020236 156 DGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~ 213 (329)
.|++++.+ +.|.++++++.--.-.-+....|+.+|+.++++-....
T Consensus 454 ------------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 454 ------------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred ------------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 24555544 57889999888666666777788889999998865443
No 95
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=83.98 E-value=4.3 Score=34.04 Aligned_cols=116 Identities=9% Similarity=0.014 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCEEEEEcC-CCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCc
Q 020236 88 AAALSLAAKLRGIPAYIVIPK-NAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGT 165 (329)
Q Consensus 88 g~a~A~~a~~~G~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t 165 (329)
|..+.++++.+|.+..--++. +.-..-.+.....|..|.+++++.+...+.++.+.++. +.-.. .++.++.. .
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~-g~~g~f~~----~ 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIV-GAFGPLEP----E 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCh----H
Confidence 467889999999764322221 11123344456678899999998877777777777763 33222 12111110 1
Q ss_pred chHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236 166 ISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA 209 (329)
Q Consensus 166 ~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v 209 (329)
--.+|.+++. .||.++|+.|+---=. ...-.+...+..-+++|
T Consensus 88 ~~~~i~~~I~~s~~dil~VglG~PkQE~-~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 88 ERKAALAKIARSGAGIVFVGLGCPKQEI-WMRNHRHLKPDAVMIGV 132 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCcHhHH-HHHHhHHhCCCcEEEEe
Confidence 1134666665 6999999999853111 11223344444555554
No 96
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=83.04 E-value=5.5 Score=34.48 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=41.3
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
+|...+|+.|..++.+....+.++.+++.+. +....+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 5677899999999999888999999998765 45567788889999885443
No 97
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=80.42 E-value=16 Score=34.66 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=68.7
Q ss_pred EEEECCc-hHHHHHHHHHHHcCCCEEEEEc-CCCC----HHHHHHHHHcCC-EEEEECCCHHHHHHHHHHHHHHcCCEee
Q 020236 79 VVTHSSG-NHAAALSLAAKLRGIPAYIVIP-KNAP----KCKVENVVRYGG-QVIWSEATMHSRESVASKVLEETGAVLV 151 (329)
Q Consensus 79 vv~~ssG-N~g~a~A~~a~~~G~~~~i~~p-~~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (329)
|+..|.| ++...+.+...+.+++++.|.- -+.+ +.-.+....+|| +++.++....=+.+.+....+. +..|-
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~a-nA~Ye 79 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKA-NALYE 79 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHT-T--BT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHH-HHHhC
Confidence 4556666 7777888888888899987773 2333 334455678999 9999876322222222222222 33443
Q ss_pred CCCCCcccccccCcchH---HHHhhCCCCCEEEE-eCCCChHHHHHHHHHHHhCCCCEEEE
Q 020236 152 HPYNDGRIISGQGTISL---EFLEQVPLLDTIIV-PISGGGLISGVALAAKSIKPAIRILA 208 (329)
Q Consensus 152 ~~~~n~~~~~g~~t~~~---Ei~~ql~~~d~vv~-~~GtGg~~~Gi~~~~k~~~~~~~vi~ 208 (329)
+.|-.. .....--++. |++++. ..++|.- ++|-|-...=+-.+++.+.|+.++++
T Consensus 80 g~YpL~-tsl~RplIa~~~v~~A~~~-ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 80 GRYPLS-TSLARPLIAKKLVEVAREE-GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp TTB--C-CCCHHHHHHHHHHHHHHHH-T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred CCcccc-ccchHHHHHHHHHHHHHHc-CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 333110 1111112333 344433 4677777 46888888888889999999999876
No 98
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.61 E-value=34 Score=33.74 Aligned_cols=52 Identities=17% Similarity=0.043 Sum_probs=41.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
...|++-..|..|.+.+..|+.+|-.++++ +..+.++++.+.+|++.+.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEecc
Confidence 456899999999999999999999853333 4567889999999999765543
No 99
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=78.39 E-value=6.3 Score=30.46 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=22.9
Q ss_pred HHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236 169 EFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE 210 (329)
Q Consensus 169 Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~ 210 (329)
++.+..+ .+|.+|-++|++.++.- +++...+.=+++.+-
T Consensus 49 ~i~~~~~~~~~d~vid~~g~~~~~~~---~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 49 QIRELTGGRGVDVVIDCVGSGDTLQE---AIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHTTTSSEEEEEESSSSHHHHHH---HHHHEEEEEEEEEES
T ss_pred ccccccccccceEEEEecCcHHHHHH---HHHHhccCCEEEEEE
Confidence 4444443 48999999988766543 344444444555544
No 100
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=77.79 E-value=10 Score=35.19 Aligned_cols=50 Identities=20% Similarity=0.390 Sum_probs=37.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..++....|..|...+..++.+|.+++++.....++.|++.++.+|++.+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 34555567889988888899999876666555556778888888999853
No 101
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.68 E-value=20 Score=31.31 Aligned_cols=57 Identities=18% Similarity=0.017 Sum_probs=36.9
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+++.+|+..+|..|.++|......|.+++++-.... .....+.++..|.++..+..|
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 345688888999999999998888998665533211 112233455557676655443
No 102
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.59 E-value=24 Score=31.47 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
.+.|+....|..|..++..|+.+|.+.++++ +.++.+.+..+.+|++.+.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 3455666678999999999999999855555 3456788888899986543
No 103
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=76.20 E-value=11 Score=33.29 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=52.6
Q ss_pred HHHHHHHHHc--CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCc-
Q 020236 89 AALSLAAKLR--GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGT- 165 (329)
Q Consensus 89 ~a~A~~a~~~--G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t- 165 (329)
..+.++++.+ |.+..-+...+.-..-++.....|..|.+++++.....+.++.+.++.+.-.+. +.+ ||-.
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g-~~~-----Gyf~~ 143 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVG-SQD-----GYFTP 143 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEE-EeC-----CCCCH
Confidence 4667777666 433111111111123344455678899999998877777777776654322221 111 2211
Q ss_pred -chHHHHhhCC--CCCEEEEeCCCCh
Q 020236 166 -ISLEFLEQVP--LLDTIIVPISGGG 188 (329)
Q Consensus 166 -~~~Ei~~ql~--~~d~vv~~~GtGg 188 (329)
-..+|.+++. .||.++|+.|+-=
T Consensus 144 ~e~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 144 EQRQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcH
Confidence 1234666665 6999999999853
No 104
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=76.19 E-value=15 Score=33.64 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHhcccc-CCCCCccc-hhhhhhcCCeEEEEec--CCCCCCccchhhHHHHHhcCchhccCCeEEEECC--
Q 020236 11 NFSSIKEAQKRISLYI-HKTPVLSS-ETLNSMSGRSLFFKCE--CFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSS-- 84 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~i-~~TPl~~~-~~l~~~~g~~i~~K~E--~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ss-- 84 (329)
++.|......+..+.+ -+||-... ..+.+..++.|.==.. ..+||-..=|- +.+....-...+.+|.....
T Consensus 84 si~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl---~Ti~e~~g~l~g~~va~vGD~~ 160 (301)
T TIGR00670 84 TLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDL---YTIYEEFGRLDGLKIALVGDLK 160 (301)
T ss_pred CHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHH---HHHHHHhCCCCCCEEEEEccCC
Confidence 4455555555555543 34554333 2344445555553322 24565333332 22221101112234555544
Q ss_pred -chHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHHcCCEEEEECC
Q 020236 85 -GNHAAALSLAAKLRGIPAYIVIPKNA--PKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 85 -GN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~ 130 (329)
+|.+.|+..+++++|+++++..|++. ++..++.++..|+++...+.
T Consensus 161 ~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 161 YGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES 209 (301)
T ss_pred CCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence 69999999999999999999999873 55556667778988876643
No 105
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.95 E-value=24 Score=30.49 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=44.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+++.+|+..+|.-|.++|......|..++++... ......+.++..+.++..+..| .++..+..++..+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3456888888999999999988899987766542 2233345566677766655554 33444444444433
No 106
>PRK07324 transaminase; Validated
Probab=75.50 E-value=31 Score=32.30 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=39.7
Q ss_pred CCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 55 GGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 55 tGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
.|.-..|.+..-... ......|+..+++..+..++..+- .+-.-.|+++...-..-....+.+|++++.++-+
T Consensus 62 ~G~~~lr~~ia~~~~---~~~~~~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~ 134 (373)
T PRK07324 62 EGSPEFKEAVASLYQ---NVKPENILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLK 134 (373)
T ss_pred CCCHHHHHHHHHHhc---CCChhhEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecc
Confidence 366555554443221 112245666666666666555443 2222334555443344456778899999988753
No 107
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=74.99 E-value=20 Score=30.90 Aligned_cols=78 Identities=15% Similarity=0.035 Sum_probs=49.7
Q ss_pred hhccCCe-EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEe
Q 020236 72 EDQAIKG-VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVL 150 (329)
Q Consensus 72 ~~~~~~~-vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~ 150 (329)
.++|-+. =|+.+|-...-++...++.++ ++.|=.-.-.++.+.++....||+.++.|+-..+..+ ++...+..+
T Consensus 35 i~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~----~a~~~~ip~ 109 (211)
T COG0800 35 IEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAK----AANRYGIPY 109 (211)
T ss_pred HHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHH----HHHhCCCcc
Confidence 3444433 245577777788888888887 5555333335778888888899999988875444333 344445555
Q ss_pred eCCC
Q 020236 151 VHPY 154 (329)
Q Consensus 151 ~~~~ 154 (329)
+...
T Consensus 110 ~PG~ 113 (211)
T COG0800 110 IPGV 113 (211)
T ss_pred cCCC
Confidence 5543
No 108
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=74.87 E-value=42 Score=31.56 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=33.4
Q ss_pred eEEEECCchHHHHHHHHHH-HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAK-LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~-~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+..++..+- .-|=...|++|.-.-..-....+..|++++.++-
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 145 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC 145 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeec
Confidence 4666677777766655432 2343345777764444345567889999998864
No 109
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=74.84 E-value=23 Score=31.18 Aligned_cols=56 Identities=11% Similarity=-0.088 Sum_probs=37.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+..+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+..|
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 456888899999999999988889987666322111 12233455567777655543
No 110
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.62 E-value=20 Score=25.26 Aligned_cols=48 Identities=19% Similarity=0.084 Sum_probs=36.3
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-----H----HHHHHHHHcCCEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-----K----CKVENVVRYGGQVI 126 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-----~----~~~~~~~~~Ga~v~ 126 (329)
++.-.+|..|.-+|.+.+.+|.+++++.+.+.. + .-.+.++..|.+++
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 677789999999999999999999999876421 1 22445666676665
No 111
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=74.30 E-value=72 Score=29.38 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=34.8
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEEecCCCchHHHHHHcCC
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIK--PAIRILAAEPIGANDAAQSKAAGR 225 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~--~~~~vi~v~~~~~~~~~~~~~~g~ 225 (329)
+++++-+++|+|++ +.....|+..++++.+ .++.|+|. ...+.+.+.++.|.
T Consensus 224 ~~l~~~~~~~ai~~---~d~~A~ga~~al~~~g~~~di~Vvg~--~~~p~~~~~i~~G~ 277 (343)
T PRK10936 224 ELLERHPDIDYIAG---SAVAAEAAIGELRGRNLTDKIKLVSF--YLSHQVYRGLKRGK 277 (343)
T ss_pred HHHHhCCCccEEEe---CCHHHHHHHHHHHhcCCCCCeEEEEe--CCCHHHHHHHHcCC
Confidence 34444346888873 3567778888888876 35778887 34556777777775
No 112
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=72.69 E-value=24 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.074 Sum_probs=24.3
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
.+|+.++|.-|.++|......|.++++.-
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 57888999999999999888898866654
No 113
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=71.91 E-value=14 Score=31.11 Aligned_cols=63 Identities=24% Similarity=0.228 Sum_probs=38.9
Q ss_pred EEE-ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCC
Q 020236 79 VVT-HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGA 148 (329)
Q Consensus 79 vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~ 148 (329)
+++ .|||-+|.++|.++..+|-.++++.....-+. -.+.+++.+.. .++..+.+.+...+.+.
T Consensus 22 ~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s-a~em~~~~~~~~~~~Di 85 (185)
T PF04127_consen 22 FITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES-AEEMLEAVKELLPSADI 85 (185)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS-HHHHHHHHHHHGGGGSE
T ss_pred EecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc-hhhhhhhhccccCccee
Confidence 444 69999999999999999999998885532111 24778887764 55666666655544433
No 114
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=69.95 E-value=7.7 Score=31.59 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=27.1
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
|....+||+|.|+|......|.+++++.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6678999999999999999998888887653
No 115
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.63 E-value=33 Score=30.94 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 130 (329)
...+|+..+|.-|.++|......|.+++++...... +...+.+...|.++..+..
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~ 96 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPC 96 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 346888889999999999988889987776543211 1122334445656555444
No 116
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=68.97 E-value=89 Score=30.90 Aligned_cols=51 Identities=18% Similarity=0.025 Sum_probs=40.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..++.-..|..|.+.+..++.+|..++++- ....++++.+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEeccc
Confidence 467778899999999999999998755543 245578888899999877763
No 117
>PRK12743 oxidoreductase; Provisional
Probab=67.85 E-value=30 Score=30.19 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=46.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
..+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..| .+...+...++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45788888999999999998899988776544322 22345566778877765543 44455555555554
No 118
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=67.74 E-value=34 Score=29.83 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=44.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..| .++..+..++..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 45688889999999999998889998776644321122334455667777655443 44455555555544
No 119
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=66.95 E-value=47 Score=31.27 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=31.8
Q ss_pred eEEEECCchHHHHHHHHHHH-c-CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKL-R-GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~-~-G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+..++..+-. - |-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~ 146 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNC 146 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEecc
Confidence 57766667777665544322 2 11234555544444445667889999998875
No 120
>PRK07814 short chain dehydrogenase; Provisional
Probab=66.81 E-value=37 Score=29.82 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=26.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+...+|+.++|--|.+++......|.+++++..
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 345688888999999999988888997766654
No 121
>PRK12939 short chain dehydrogenase; Provisional
Probab=66.73 E-value=44 Score=28.73 Aligned_cols=56 Identities=18% Similarity=0.072 Sum_probs=35.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
...+|+..+|.-|.++|......|.+++++..... .......++..+.++..+..|
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAAD 64 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 45578888999999999998888988666532211 112233445556666655443
No 122
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=66.63 E-value=42 Score=30.52 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=33.1
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
+|...+|-.|.+++..|+.+|.+++++.. ++.+.+.++.+|++.++
T Consensus 143 LI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 143 MVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred EEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 44455788888888889999987555433 45677788888886544
No 123
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.26 E-value=46 Score=29.00 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=45.9
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|.-|.++|..-...|.+++++......+...+.+...|.++..+..| .++..+..++..+.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 455688888999999999998889999887765421122334455567776655443 34444455555444
No 124
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=66.12 E-value=15 Score=34.37 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=45.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+.+.++..+||..+..+|..+-..+=.-.|++|.-........+...|++++++|-+
T Consensus 39 g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 39 GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 567899999999999999988444444788889888888899999999999999753
No 125
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=65.79 E-value=45 Score=29.07 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=46.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..++.-|.++|......|.+++++-... .+...+.++..|.++..+..| .++..+..++..++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 34568888999999999999888999987764322 233345566678777655443 44555555555444
No 126
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=65.60 E-value=56 Score=26.06 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=46.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH----HHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK----CKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
.+|+..++.-|.++|..-...|-..++++..+.+. ...+.++..|.++..+..| .++..+..++..++
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 47778899999999999777777666666655222 2344567788988877653 55556666666544
No 127
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.42 E-value=54 Score=28.32 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+..+|+..+|..|.+++..-...|.+++++...... ......++..+.++..+..|
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 61 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMD 61 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 346788889999999999977889988776543322 12233455567776555443
No 128
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=64.96 E-value=51 Score=23.91 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=46.7
Q ss_pred CccchhhHHHHHhcCchhccCCeEEEECCchHHHHH--HHHHHHcCCCEEEEEcCCCCHHHHHHHHHc-CCEEEEECC
Q 020236 56 GAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAAL--SLAAKLRGIPAYIVIPKNAPKCKVENVVRY-GGQVIWSEA 130 (329)
Q Consensus 56 GS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~--A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~-Ga~v~~~~~ 130 (329)
|....-.+..+............++.+++-|+.-++ +..|.+.+.|.+++- ...+......++.+ ..+|+.+++
T Consensus 5 G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg 81 (92)
T PF04122_consen 5 GADRYETSAKVAKKFYPDNKSDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYIIGG 81 (92)
T ss_pred CCCHHHHHHHHHHHhcccCCCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEECC
Confidence 544444555555543222355667777766655444 445777888776665 77888888888887 455777765
No 129
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=64.85 E-value=17 Score=29.69 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcCC--CCH--HHH----HHHHHcCCEEEEEC
Q 020236 84 SGNHAAALSLAAKLRGIPAYIVIPKN--APK--CKV----ENVVRYGGQVIWSE 129 (329)
Q Consensus 84 sGN~g~a~A~~a~~~G~~~~i~~p~~--~~~--~~~----~~~~~~Ga~v~~~~ 129 (329)
-+|.+.|++..+.++|..++++.|++ .+. ..+ +.....|.++...+
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999998 444 222 34455688888884
No 130
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=63.51 E-value=70 Score=27.80 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=46.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|.-|.++|......|.+++++-. .......+.++..+.++..+..| .++..+..++..++
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 345688889999999999998889998776532 22344455666667777665543 44455555555444
No 131
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=63.21 E-value=1.2e+02 Score=29.63 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCEEEEE-----------cCCCCHHHHHHHHHcCCEEEEECCC------HHHHHHHHHHHHHHc-CCE-e
Q 020236 90 ALSLAAKLRGIPAYIVI-----------PKNAPKCKVENVVRYGGQVIWSEAT------MHSRESVASKVLEET-GAV-L 150 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~------~~~~~~~a~~~~~~~-~~~-~ 150 (329)
-+..+|+..|+++++.. |..+....+......|++.+...++ .-++.+...+.+++- ..+ +
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 34567899999988865 3334456677777789998877542 334555555544331 111 1
Q ss_pred eCCCCCccc--------ccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236 151 VHPYNDGRI--------ISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA 214 (329)
Q Consensus 151 ~~~~~n~~~--------~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~ 214 (329)
..-+..+.. .+.....+.++.+.+ +.+.||+.+-||.+.--++ ...|...|+++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~-~akaIVv~T~SG~TA~~vS----r~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL-DAKAIVVLTESGRTARLLS----KYRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc-CCCEEEEEcCChHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 000111100 011111122333333 5789999999999876544 4578999999998653
No 132
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=62.93 E-value=1e+02 Score=26.71 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=24.5
Q ss_pred CCCCEEEEeCCCChHHHHHHHHHHHhC----CCCEEEEEec
Q 020236 175 PLLDTIIVPISGGGLISGVALAAKSIK----PAIRILAAEP 211 (329)
Q Consensus 175 ~~~d~vv~~~GtGg~~~Gi~~~~k~~~----~~~~vi~v~~ 211 (329)
+.||+||++. +..+.|+..++++.+ .++.|++...
T Consensus 176 ~~~~ai~~~~--d~~a~g~~~~l~~~g~~ip~di~v~g~d~ 214 (268)
T cd06270 176 APFTAVFCAN--DEMAAGAISALREHGISVPQDVSIIGFDD 214 (268)
T ss_pred CCCCEEEEcC--cHHHHHHHHHHHHcCCCCCCceeEEEecC
Confidence 3588888774 456678888888876 2466777764
No 133
>PRK07550 hypothetical protein; Provisional
Probab=62.41 E-value=41 Score=31.51 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=35.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
..|+..+++..+..++..+- .+-.-.|++|+-.-..-...++..|++++.++.+
T Consensus 91 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 144 (386)
T PRK07550 91 EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCD 144 (386)
T ss_pred ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecC
Confidence 45777666677776655443 3334567777654444456778899999988753
No 134
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=62.36 E-value=83 Score=28.73 Aligned_cols=117 Identities=19% Similarity=0.078 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHhccccC--CCCCccchhhhhhcCCeEEEEecCC-CCCCccchhhHHHHHhcCchhccCCe-EEEECCch
Q 020236 11 NFSSIKEAQKRISLYIH--KTPVLSSETLNSMSGRSLFFKCECF-QKGGAFKFRGASNAVLSLDEDQAIKG-VVTHSSGN 86 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~i~--~TPl~~~~~l~~~~g~~i~~K~E~~-nptGS~KdR~a~~~l~~a~~~~~~~~-vv~~ssGN 86 (329)
++.|-...+.|+.+.|. ...-..+..|.++.+++||==+=+. +|+-..=|. ..++.-....+..+ +.+.-..|
T Consensus 88 si~DTArVLsr~~D~I~~R~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl---~Ti~E~~g~l~g~k~a~vGDgNN 164 (310)
T COG0078 88 SIKDTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADL---MTIKEHFGSLKGLKLAYVGDGNN 164 (310)
T ss_pred cHHHHHHHHHhhhheEEEecccHHHHHHHHHhCCCceEcccccccCcHHHHHHH---HHHHHhcCcccCcEEEEEcCcch
Confidence 45666667777776552 2333445667777787777433333 465322222 11211100012233 44445578
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHH----HHHcCCEEEEECC
Q 020236 87 HAAALSLAAKLRGIPAYIVIPKNAP--KCKVEN----VVRYGGQVIWSEA 130 (329)
Q Consensus 87 ~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~----~~~~Ga~v~~~~~ 130 (329)
-+.|+-.+|.++|+++.+..|++.. +.-+.. ....|+++..+..
T Consensus 165 v~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 165 VANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred HHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 9999999999999999999999842 222222 2344888887754
No 135
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.05 E-value=1.1e+02 Score=29.76 Aligned_cols=133 Identities=11% Similarity=0.082 Sum_probs=67.8
Q ss_pred EEEECCchHH-----HHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHHHHHcCC
Q 020236 79 VVTHSSGNHA-----AALSLAAKLRGIPAYIVIPKN--APKCKVENVVRYGGQVIWSEA---TMHSRESVASKVLEETGA 148 (329)
Q Consensus 79 vv~~ssGN~g-----~a~A~~a~~~G~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~~~~~~~~ 148 (329)
+|+++.++.| .+++.+-++.|+++..|-|.. ..+... ....|......+. +.+...+..++++++.+.
T Consensus 7 ~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~--~~~~g~~~~~ld~~~~~~~~v~~~~~~~~~~~D~ 84 (451)
T PRK01077 7 VIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYH--TAATGRPSRNLDSWMMGEELVRALFARAAQGADI 84 (451)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHH--HHHhCCCcccCCceeCCHHHHHHHHHHhcccCCE
Confidence 4555544333 344455577899888887632 222111 1233433222222 233344444444433344
Q ss_pred EeeCCCC---CcccccccCcchHHHHhhCCCCCEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEEecCC
Q 020236 149 VLVHPYN---DGRIISGQGTISLEFLEQVPLLDTIIVPISG-GGLISGVALAAKSIKPAIRILAAEPIG 213 (329)
Q Consensus 149 ~~~~~~~---n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~Gt-Gg~~~Gi~~~~k~~~~~~~vi~v~~~~ 213 (329)
..+...- ++....-......+|.+.++-|-.+|+.... +.+++.+..++....++.++.||-...
T Consensus 85 vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~ 153 (451)
T PRK01077 85 AVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNR 153 (451)
T ss_pred EEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 4432210 1000000123345889888777777766554 567778888887776677887875444
No 136
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.64 E-value=57 Score=30.10 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=35.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
.+|+....|..|.+++.+|+.+|.+++++ ..++.+++.++.+|++.++
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTL 215 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEe
Confidence 45555555999999999999999864443 2356678888889987554
No 137
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.33 E-value=1.1e+02 Score=27.95 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=50.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEE-cCCCCHHHHHHHHHcC-CEEEEECC-CHHHHHHHHHHHHHHcCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVI-PKNAPKCKVENVVRYG-GQVIWSEA-TMHSRESVASKVLEETGA 148 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~-p~~~~~~~~~~~~~~G-a~v~~~~~-~~~~~~~~a~~~~~~~~~ 148 (329)
...+|+.+++-.|+++|.--+++|-+.++.= -.....+..+.++..| +.-..++- +.++..+.+++..++.|.
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 4457888888899999999888888444332 2223456777888777 33345553 577888888888888653
No 138
>PRK08589 short chain dehydrogenase; Validated
Probab=61.20 E-value=50 Score=29.20 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=44.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|--|.++|..-...|.+++++..........+.++..|.++..+..| .++..+..++..++
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 45688888899999999998888998887754421122344555567666555443 34444555555544
No 139
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=61.08 E-value=1.5e+02 Score=28.11 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=76.3
Q ss_pred eEEEECCchHHHHHHHHHHHc--CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLR--GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~--G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
-.|..|+|+-|.+..-..+.. .++++.+.-....+.-.++.+.++.+.+.+... .. +.++.+.. .+ .
T Consensus 4 VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~-~~----~~~l~~~l-----~~-~ 72 (385)
T PRK05447 4 ITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE-EA----AKELKEAL-----AA-A 72 (385)
T ss_pred EEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH-HH----HHHHHHhh-----cc-C
Confidence 356678999998877666655 566666665555556677889999998888542 11 12222210 11 0
Q ss_pred CcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC-----------------------CCCEEEEEecC
Q 020236 156 DGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIK-----------------------PAIRILAAEPI 212 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~-----------------------~~~~vi~v~~~ 212 (329)
+.....|... ..++. ..+++|.|+.++++...+.-...+++... .+.+++-|+++
T Consensus 73 ~~~v~~G~~~-~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSE 150 (385)
T PRK05447 73 GIEVLAGEEG-LCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSE 150 (385)
T ss_pred CceEEEChhH-HHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHH
Confidence 1111122111 11222 23468999999877544444555554322 24678888877
Q ss_pred CCchHHHHHHcC
Q 020236 213 GANDAAQSKAAG 224 (329)
Q Consensus 213 ~~~~~~~~~~~g 224 (329)
.+ .+++.+..+
T Consensus 151 h~-ai~q~l~~~ 161 (385)
T PRK05447 151 HS-AIFQCLPGE 161 (385)
T ss_pred HH-HHHHHhcCC
Confidence 75 377777766
No 140
>PRK08628 short chain dehydrogenase; Provisional
Probab=61.03 E-value=70 Score=27.73 Aligned_cols=56 Identities=16% Similarity=0.059 Sum_probs=39.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+.-+|+..+|--|.++|..-...|.+++++..........+.++..|.++..+..|
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVD 63 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEcc
Confidence 45688888899999999998889999877654332223345556667777666554
No 141
>PRK08226 short chain dehydrogenase; Provisional
Probab=60.77 E-value=55 Score=28.52 Aligned_cols=70 Identities=9% Similarity=0.007 Sum_probs=43.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..| .++..+...+..++
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45688889999999999998888998766643321122233444456676555443 33444444444443
No 142
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=60.68 E-value=39 Score=29.39 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=40.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
++.-+|+..+|.-|.+++......|.+++++..... .....+.++..|.++..+..|
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 345688889999999999999999998776654321 123344566678888766554
No 143
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=60.52 E-value=54 Score=30.16 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=34.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
+.|+...+|..|.+....++.+|.+.++++. .++.+++..+.+||+.+.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 4455555688888888888988886554443 246777888888887543
No 144
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=60.49 E-value=1.1e+02 Score=26.15 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=63.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH---------------HHcCCEEEEECCCHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENV---------------VRYGGQVIWSEATMHSRESVAS 140 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~---------------~~~Ga~v~~~~~~~~~~~~~a~ 140 (329)
.+.++..+.|+.|...+..-...|.+++++-|+-.+. -.+.. ...++.+++.-.+.++.-+...
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~-l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i~ 88 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTEN-LVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQVK 88 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHH-HHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHHH
Confidence 4567777889999888887777888888777653322 11111 1235555544333333333444
Q ss_pred HHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHh
Q 020236 141 KVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200 (329)
Q Consensus 141 ~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~ 200 (329)
+.+++.. ++|-.++|... -.+.+-+.. -+-+.++++|+|..-.+++.++..
T Consensus 89 ~~a~~~~--lvn~~d~~~~~---~f~~Pa~~~----~g~l~iaIsT~G~sP~la~~lr~~ 139 (202)
T PRK06718 89 EDLPENA--LFNVITDAESG---NVVFPSALH----RGKLTISVSTDGASPKLAKKIRDE 139 (202)
T ss_pred HHHHhCC--cEEECCCCccC---eEEEeeEEE----cCCeEEEEECCCCChHHHHHHHHH
Confidence 4444332 33333443211 111122222 245888888888887888887764
No 145
>PRK07774 short chain dehydrogenase; Provisional
Probab=60.49 E-value=67 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=26.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+.-+|+..+|--|.+++......|.+++++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADI 38 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888999999999998888998777654
No 146
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=60.48 E-value=1.1e+02 Score=26.33 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=63.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcC---------------CEEEEECCCHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG---------------GQVIWSEATMHSRESVAS 140 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~G---------------a~v~~~~~~~~~~~~~a~ 140 (329)
.+.|+...+|.-|.-=+..-...|-+++++-|+- .++-..+.+..+ +.+++...+..+.-+...
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i~ 90 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERIA 90 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHHH
Confidence 3467777888887776777777788888888877 333222222222 444444333223333344
Q ss_pred HHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHh
Q 020236 141 KVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200 (329)
Q Consensus 141 ~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~ 200 (329)
+.+++.+ .++|-.++|.. ...+.+-+.+ ..-+.++++|||..--+++.+++.
T Consensus 91 ~~a~~~~-i~vNv~D~p~~---~~f~~Pa~~~----r~~l~iaIsT~G~sP~la~~ir~~ 142 (210)
T COG1648 91 KAARERR-ILVNVVDDPEL---CDFIFPAIVD----RGPLQIAISTGGKSPVLARLLREK 142 (210)
T ss_pred HHHHHhC-CceeccCCccc---Cceecceeec----cCCeEEEEECCCCChHHHHHHHHH
Confidence 4444433 23444444432 1111122221 233888888888777777777764
No 147
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=59.98 E-value=74 Score=28.68 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=34.3
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
+|...+|..|.++...|+.+|.+++++. .++.+.+.++.+|++-+.
T Consensus 148 lI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 148 VVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred EEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 4555689999999999999999755543 345678888889986443
No 148
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=59.57 E-value=81 Score=28.90 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=29.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
..|+...+|..|.+++..|+.+|.+.++++. .++.+...++.+|++
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 222 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGAD 222 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCc
Confidence 4444446688888888888888885444442 235566666777764
No 149
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=59.55 E-value=1.5e+02 Score=27.55 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=42.6
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH-cCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR-YGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~~ 130 (329)
+++....|.-|...+..++.+|-..++++ +.++.++++.+. .|++++..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 79999999999999999999999999888 456788888877 7777776544
No 150
>PRK07109 short chain dehydrogenase; Provisional
Probab=59.54 E-value=51 Score=30.37 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=45.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
...+|+..+|--|.++|......|.+++++...... +...+.++..|.++..+..| .++..+.+++..++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346888889999999999988899987776543211 12344566778887766543 34444445554444
No 151
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.50 E-value=1.3e+02 Score=26.89 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=29.5
Q ss_pred chHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC----CCCEEEEEec
Q 020236 166 ISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIK----PAIRILAAEP 211 (329)
Q Consensus 166 ~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~----~~~~vi~v~~ 211 (329)
...+++++-+++|.||+. +.....|+..++++.+ .++.|+|.+-
T Consensus 192 ~~~~~l~~~~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~ 239 (305)
T cd06324 192 QAENLLKRYPDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNW 239 (305)
T ss_pred HHHHHHHHCCCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCC
Confidence 334455544578988864 4566678999998876 2567777764
No 152
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=59.37 E-value=76 Score=29.50 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=33.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
+.|+...+|..|.+++..|+.+|...++.+. .++.+++.++.+|++.+.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 4444445788898888889999985444442 245677777888886443
No 153
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=58.77 E-value=52 Score=30.40 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=30.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCC-CEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGI-PAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
..|+...+|..|.+++..|+.+|. +++++. .++.+...++.+|++-
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADA 225 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCe
Confidence 344444578888888888999998 444332 2455667777788753
No 154
>PRK06836 aspartate aminotransferase; Provisional
Probab=58.51 E-value=40 Score=31.78 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=33.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
..|+..+++..+..++..+- ..-.-.|++|...-..-...++.+|++++.++.+
T Consensus 97 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 97 DHIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150 (394)
T ss_pred CcEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC
Confidence 45777677777766554332 2222345556544444556778899999988653
No 155
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.30 E-value=1.4e+02 Score=27.51 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=28.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
++|..-.+|..|.++|..+...|++++++=+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 457777999999999999999999999987653
No 156
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=58.12 E-value=41 Score=31.48 Aligned_cols=52 Identities=12% Similarity=-0.008 Sum_probs=29.9
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+..++..+- .+-.-.|++|.-.-..-....+..|++++.++-
T Consensus 93 ~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 93 EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 4555555566666554432 222234555544333344567889999998764
No 157
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=58.07 E-value=1.6e+02 Score=27.48 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=45.8
Q ss_pred EEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCCcEE
Q 020236 180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVI 259 (329)
Q Consensus 180 vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~ 259 (329)
=|++.++|-..-|++.+.+.++ ++-+-|-|...|... ++..+.+..+++
T Consensus 76 gViaaSaGNHaQGvA~aa~~lG--i~a~IvMP~~tp~~K-----------------------------v~a~r~~GaeVi 124 (347)
T COG1171 76 GVIAASAGNHAQGVAYAAKRLG--IKATIVMPETTPKIK-----------------------------VDATRGYGAEVI 124 (347)
T ss_pred ceEEecCCcHHHHHHHHHHHhC--CCEEEEecCCCcHHH-----------------------------HHHHHhcCCEEE
Confidence 3666778899999999988876 455556666665321 222334444443
Q ss_pred Ee--CHHHHHHHHHHHHHHcCc
Q 020236 260 TV--EDKEIIEAMKLCYEILKV 279 (329)
Q Consensus 260 ~V--~d~e~~~a~~~l~~~egi 279 (329)
-+ +-+|+.++.+++++++|.
T Consensus 125 l~g~~~dda~~~a~~~a~~~G~ 146 (347)
T COG1171 125 LHGDNFDDAYAAAEELAEEEGL 146 (347)
T ss_pred EECCCHHHHHHHHHHHHHHcCC
Confidence 33 457888999999999887
No 158
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=57.76 E-value=75 Score=29.01 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=34.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH-cCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR-YGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~-~Ga~v~ 126 (329)
..+|.+.+|..|.+++..|+.+|.++++.. .++.+.+.++. +|++-+
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDA 201 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCcee
Confidence 445556679999999999999999755543 23567777777 888644
No 159
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=57.28 E-value=1.1e+02 Score=25.28 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCC
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPY 154 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (329)
..++|..-..|+-|.++|..++.+|++++.+-|...+.. .....+.+.. +.++ +.++-+...++-
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~~----~l~e-------ll~~aDiv~~~~- 99 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEYV----SLDE-------LLAQADIVSLHL- 99 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEES----SHHH-------HHHH-SEEEE-S-
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hcccccceee----ehhh-------hcchhhhhhhhh-
Confidence 356788889999999999999999998888877653322 3344444221 3433 233334333331
Q ss_pred CCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHH
Q 020236 155 NDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191 (329)
Q Consensus 155 ~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~ 191 (329)
|...+-...+..+.+++++ ++.+++-+|-|+.+-
T Consensus 100 --plt~~T~~li~~~~l~~mk-~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 100 --PLTPETRGLINAEFLAKMK-PGAVLVNVARGELVD 133 (178)
T ss_dssp --SSSTTTTTSBSHHHHHTST-TTEEEEESSSGGGB-
T ss_pred --ccccccceeeeeeeeeccc-cceEEEeccchhhhh
Confidence 2233334566778898885 688999999998764
No 160
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=57.14 E-value=1.2e+02 Score=25.82 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=28.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA 110 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~ 110 (329)
.+.++...+|.-|..-+......|-+++++-|+-.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 34678889999998888888888998888877654
No 161
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=57.13 E-value=31 Score=30.30 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=29.6
Q ss_pred cCCeEEEECCchHH--HHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCE-EEEECCCHHH
Q 020236 75 AIKGVVTHSSGNHA--AALSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGGQ-VIWSEATMHS 134 (329)
Q Consensus 75 ~~~~vv~~ssGN~g--~a~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~-v~~~~~~~~~ 134 (329)
+++.+|..-.-|.. -++|..++..|-....-.-.. .......+.+.+|.. |+.+|-..++
T Consensus 6 GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~ 69 (259)
T COG0623 6 GKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDE 69 (259)
T ss_pred CceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHH
Confidence 45566665555544 345555666676655544322 222223334555554 3456554443
No 162
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=57.02 E-value=43 Score=30.70 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=32.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+.|+....|..|.+++..|+.+|.+++++.+ ++.|++.++.+||+.+
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASA 213 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCcee
Confidence 4455555588888888888889986444322 3567888888998754
No 163
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=56.98 E-value=99 Score=28.78 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+.|+...+|..|..++..|+.+|.+.++.+. .++.+++..+.+|++.+
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATAT 240 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceE
Confidence 3444445678888888888888875333332 34567777777887543
No 164
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=56.88 E-value=1.9e+02 Score=27.98 Aligned_cols=48 Identities=6% Similarity=0.096 Sum_probs=33.7
Q ss_pred chHHHHhhCCCCCEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEEecCC
Q 020236 166 ISLEFLEQVPLLDTIIVPISG-GGLISGVALAAKSIKPAIRILAAEPIG 213 (329)
Q Consensus 166 ~~~Ei~~ql~~~d~vv~~~Gt-Gg~~~Gi~~~~k~~~~~~~vi~v~~~~ 213 (329)
...++.++++.|-.+|+...+ ..++..+..+++...+..++.||-...
T Consensus 101 s~adlAk~l~~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~ 149 (449)
T TIGR00379 101 STASVAKALDAPIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNR 149 (449)
T ss_pred cHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEEC
Confidence 356899999888788887765 456666666666655677777775443
No 165
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.60 E-value=56 Score=27.95 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=35.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH--HHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK--CKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~~ 131 (329)
.-+|+..+|.-|..+|......|.++++++..+... .....+...+.++..+..|
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457888899999999998777898877663433211 1223344456666655544
No 166
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.34 E-value=83 Score=27.03 Aligned_cols=56 Identities=23% Similarity=0.125 Sum_probs=37.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 131 (329)
..-+|+.++|--|.+++......|.++++....... ......++..|.++..+..|
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLAD 64 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEec
Confidence 456778888999999999888889987665532211 22344566667776655443
No 167
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.33 E-value=80 Score=29.14 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=37.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS 128 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 128 (329)
+..-+|.+.+|.-|..+...|+.+|..+++.+. +..|.+.++.+||+.+.-
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 344577778999999999999999984444432 346666889999986654
No 168
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.06 E-value=1.3e+02 Score=25.89 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=27.4
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC----CCCEEEEEec
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIK----PAIRILAAEP 211 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~----~~~~vi~v~~ 211 (329)
+++++-++||+||+. +..+..|+..++++.+ .++.+++.+.
T Consensus 168 ~~l~~~~~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 212 (265)
T cd06285 168 KLLRSDSPPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYND 212 (265)
T ss_pred HHHcCCCCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeecC
Confidence 344333468998887 4556678999999876 3456777653
No 169
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=55.90 E-value=1.1e+02 Score=28.87 Aligned_cols=77 Identities=17% Similarity=0.052 Sum_probs=44.8
Q ss_pred CCCCCCccchhhHHHHHhcCchhc---cCCeE--EEECCchHHHHHHHHHH---HcCCCEEEEEcCCCCHHHHHHHHHcC
Q 020236 51 CFQKGGAFKFRGASNAVLSLDEDQ---AIKGV--VTHSSGNHAAALSLAAK---LRGIPAYIVIPKNAPKCKVENVVRYG 122 (329)
Q Consensus 51 ~~nptGS~KdR~a~~~l~~a~~~~---~~~~v--v~~ssGN~g~a~A~~a~---~~G~~~~i~~p~~~~~~~~~~~~~~G 122 (329)
+..+.|....|-+..-.... ..+ ....+ +..+++..|..++..+- .-| -.|++|+-.-+.-...++.+|
T Consensus 65 Y~~~~G~~~lR~aia~~~~~-~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pG--d~Vlv~~P~y~~~~~~~~~~g 141 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELLFG-ADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPD--AKVWVSDPTWPNHRAIFEAAG 141 (396)
T ss_pred cCCCCCCHHHHHHHHHHhcC-CCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCC--CeEEECCCCcccHHHHHHHcC
Confidence 33345877777665433221 111 12334 56666677777765322 234 346666655555677888999
Q ss_pred CEEEEECC
Q 020236 123 GQVIWSEA 130 (329)
Q Consensus 123 a~v~~~~~ 130 (329)
++++.++-
T Consensus 142 ~~~v~v~~ 149 (396)
T PRK09257 142 LEVKTYPY 149 (396)
T ss_pred CcEEEEec
Confidence 99998863
No 170
>PRK07478 short chain dehydrogenase; Provisional
Probab=55.70 E-value=74 Score=27.57 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|.-|.++|..-...|.+++++...... +.....++..|.++..+..| .++..+..++..++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356788888999999999988889987766532211 12234456667777666543 44455555555554
No 171
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=55.65 E-value=75 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=31.7
Q ss_pred hhHHHHHhcCchh------ccCCeEEEECCchHHHHHHHHHHHcCCCEEE
Q 020236 61 RGASNAVLSLDED------QAIKGVVTHSSGNHAAALSLAAKLRGIPAYI 104 (329)
Q Consensus 61 R~a~~~l~~a~~~------~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i 104 (329)
++..+.+..+.+. -..++++.-..||.|..+|......|.++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 5555555554433 1246688888899999999998889987774
No 172
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=55.63 E-value=1.1e+02 Score=28.45 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
...|+...+|..|.+++..++.+|...++.+.. ++.+++.++.+|++.+.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 345555567899988888899999843333322 35677888889986443
No 173
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=55.53 E-value=93 Score=28.36 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=30.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..++....|-.|.+++..++.+|.+-++++. .++.+.+.++.+|++.+
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~ 212 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFV 212 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEE
Confidence 3444445678888888888888887233332 23556677777887544
No 174
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=55.45 E-value=1.3e+02 Score=25.47 Aligned_cols=49 Identities=31% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHh-CCCCEEEE
Q 020236 155 NDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI-KPAIRILA 208 (329)
Q Consensus 155 ~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~-~~~~~vi~ 208 (329)
+|....+|. ++|.+.++++||++|+.- |+.+-++.....+. .|.-++|.
T Consensus 84 ~n~~vv~g~---Ap~~L~~~~~~daiFIGG--g~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 84 DNLEVVEGD---APEALPDLPSPDAIFIGG--GGNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred CcEEEEecc---chHhhcCCCCCCEEEECC--CCCHHHHHHHHHHHcCcCCeEEE
Confidence 444444443 577888888899998763 47788888877665 45455554
No 175
>PRK12937 short chain dehydrogenase; Provisional
Probab=55.42 E-value=97 Score=26.48 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=45.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..| .++..+..++..++
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456888889999999999988899987766543321 22344556678888776654 33444444444443
No 176
>PRK07832 short chain dehydrogenase; Provisional
Probab=55.33 E-value=56 Score=28.79 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=23.8
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
.+|+.++|.-|.+++......|.+++++-
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 47888889999999999888898866554
No 177
>PRK06128 oxidoreductase; Provisional
Probab=55.32 E-value=1.1e+02 Score=27.45 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=46.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC-C--CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN-A--PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~--~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|--|.++|..-...|.++++..... . .....+.++..|.++..+..| .+++.+...+..+.
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34578888999999999999888899887655322 1 123345667778887766554 34445555555443
No 178
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=55.24 E-value=50 Score=31.95 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC-----CCHHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN-----APKCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~ 127 (329)
.+.+++-.+||.|.-+|..+.++|.+++++.... ......+.++..|.+++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 4678888999999999999999999998887653 122334556667777663
No 179
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=54.85 E-value=84 Score=25.86 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=18.8
Q ss_pred CCeEEEECCchHH---HHHHHHHHHcCCCEEEEE
Q 020236 76 IKGVVTHSSGNHA---AALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 76 ~~~vv~~ssGN~g---~a~A~~a~~~G~~~~i~~ 106 (329)
.+.++-+++||.| .++|..-+..|+++++++
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 3446667777766 344444566799988844
No 180
>PRK06348 aspartate aminotransferase; Provisional
Probab=54.80 E-value=85 Score=29.42 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=33.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
..|+..+++.++..++..+-. +-.-.|++|.-.-..-...++..|++++.++
T Consensus 90 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 457777788888766655432 2223456665544455677788899998875
No 181
>PRK07326 short chain dehydrogenase; Provisional
Probab=54.68 E-value=90 Score=26.55 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=25.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
...+|+..+|..|.+++......|.+++++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 4457788899999999999888899876665
No 182
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=54.66 E-value=67 Score=26.18 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcC---------CCCHHHHHHHHHcCC
Q 020236 54 KGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPK---------NAPKCKVENVVRYGG 123 (329)
Q Consensus 54 ptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~---------~~~~~~~~~~~~~Ga 123 (329)
|+--+-++.....+.+| ++.+.++++. +|+|.++.-++-+... .++++++... ...++-.+.++..|+
T Consensus 7 pG~eNT~~tle~a~erA-~elgik~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 7 PGKENTDETLEIAVERA-KELGIKHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred CcccchHHHHHHHHHHH-HhcCcceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 55567788888888887 5556666555 4678888766655443 3888877632 145677888999999
Q ss_pred EEEEECC
Q 020236 124 QVIWSEA 130 (329)
Q Consensus 124 ~v~~~~~ 130 (329)
+|..-..
T Consensus 85 ~v~~~sH 91 (186)
T COG1751 85 KVLTQSH 91 (186)
T ss_pred eeeeehh
Confidence 9986543
No 183
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=54.65 E-value=1.1e+02 Score=25.96 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=35.1
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+|+.++|-.|..+|..-...|.+++++.....+ ....+.++..|+++..+..|
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 56 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCD 56 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEec
Confidence 677888999999999888889887666533211 12334456667776655443
No 184
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=54.41 E-value=53 Score=29.07 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=23.0
Q ss_pred CeEEEECCchHH---HHHHHHHHHcCCCEEEEEcCC
Q 020236 77 KGVVTHSSGNHA---AALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 77 ~~vv~~ssGN~g---~a~A~~a~~~G~~~~i~~p~~ 109 (329)
+.+|.+..||.| .++|..-+..|+++.+++++.
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 446667777665 455555666799999999654
No 185
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=54.28 E-value=1.5e+02 Score=25.86 Aligned_cols=116 Identities=10% Similarity=-0.050 Sum_probs=62.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH---------------HHcCCEEEEECCCHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENV---------------VRYGGQVIWSEATMHSRESVAS 140 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~---------------~~~Ga~v~~~~~~~~~~~~~a~ 140 (329)
.+.|+.-.+|.-|..=+..-...|-+++|+-|+-.++.+ .+. ...|+.+++.-.+-.+.-+...
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~-~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~ 103 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL-DLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIR 103 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH-HHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHH
Confidence 345777777777755455555577777787777543321 111 1246665555444344444555
Q ss_pred HHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHh
Q 020236 141 KVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200 (329)
Q Consensus 141 ~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~ 200 (329)
+.+++.+.+ +|-.++|... ..+.+-+.. -+.+.++++|||..-.+++.++..
T Consensus 104 ~~a~~~~~l-vn~vd~p~~~---dFi~PAiv~----rg~l~IaIST~G~sP~lar~lR~~ 155 (223)
T PRK05562 104 KHCDRLYKL-YIDCSDYKKG---LCIIPYQRS----TKNFVFALNTKGGSPKTSVFIGEK 155 (223)
T ss_pred HHHHHcCCe-EEEcCCcccC---eEEeeeEEe----cCCEEEEEECCCcCcHHHHHHHHH
Confidence 566554432 2223333211 111122222 245888888888777777777764
No 186
>PRK06114 short chain dehydrogenase; Provisional
Probab=54.13 E-value=1.2e+02 Score=26.24 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=44.6
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|--|.++|..-...|.++++....... ....+.++..|.++..+..| .++..+...+..++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3456888888999999999988899988776643321 22344566667776655443 33444444444443
No 187
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=54.12 E-value=46 Score=25.45 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHcCCEEEEECC-CH----HHHHHHHHHHHHHcCCEeeC-CCCCcccccccCcchHHHHhhCCCCCEEE
Q 020236 108 KNAPKCKVENVVRYGGQVIWSEA-TM----HSRESVASKVLEETGAVLVH-PYNDGRIISGQGTISLEFLEQVPLLDTII 181 (329)
Q Consensus 108 ~~~~~~~~~~~~~~Ga~v~~~~~-~~----~~~~~~a~~~~~~~~~~~~~-~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv 181 (329)
.-.++..+..+...|-+.+..-. +. +-.....++.+++.|.-|++ |............-..++++++++|-.++
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~h 92 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAH 92 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 34567778888888888766533 11 11222344556666766654 22211111112222345677777787777
Q ss_pred EeCCC
Q 020236 182 VPISG 186 (329)
Q Consensus 182 ~~~Gt 186 (329)
|.+|+
T Consensus 93 C~sG~ 97 (110)
T PF04273_consen 93 CRSGT 97 (110)
T ss_dssp -SCSH
T ss_pred CCCCh
Confidence 77665
No 188
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.08 E-value=1.2e+02 Score=26.77 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=43.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-HHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-MHSRESVASKVLE 144 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~a~~~~~ 144 (329)
..+|+..+|.-|.++|......|.+++++... ..+.+.+...|.+.+.++-. .++..+..++..+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 45888889999999999988889987776542 34455566667777666643 4444444454434
No 189
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=53.64 E-value=1.1e+02 Score=28.88 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=33.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
+.|+...+|..|..++..|+.+|.+.+++.. .++.+++..+.+|++.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 4455567788888888888888887666432 2466788888888874
No 190
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=53.63 E-value=1.8e+02 Score=26.76 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=77.3
Q ss_pred HHHhcCchhccCCeEEEEC-CchHHHHHHHHHHHcCCCEEEEEcCCC-----------CH---HHH--HH-HHHcC---C
Q 020236 65 NAVLSLDEDQAIKGVVTHS-SGNHAAALSLAAKLRGIPAYIVIPKNA-----------PK---CKV--EN-VVRYG---G 123 (329)
Q Consensus 65 ~~l~~a~~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~i~~p~~~-----------~~---~~~--~~-~~~~G---a 123 (329)
..+..+.. .+...|+... ..+.-...-..++..|+|++.+-.... .. ... +. .+.+| .
T Consensus 71 ~~i~~li~-~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~g 149 (336)
T PRK15408 71 QLINNFVN-QGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGKDKA 149 (336)
T ss_pred HHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCCCCC
Confidence 34444433 4566766654 333334444557788999888743210 11 111 11 22333 5
Q ss_pred EEEEECCC-----HHHHHHHHHHHH-HH-cCCEeeC-CCCCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHH
Q 020236 124 QVIWSEAT-----MHSRESVASKVL-EE-TGAVLVH-PYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVAL 195 (329)
Q Consensus 124 ~v~~~~~~-----~~~~~~~a~~~~-~~-~~~~~~~-~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~ 195 (329)
+|..+.+. ...+.+-.++.. ++ ++.-.+. ++.+.....++ ....++++.-+++|.||++ +...+.|+..
T Consensus 150 ki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~~~a~-~~~~~lL~~~pdi~aI~~~--~~~~~~Ga~~ 226 (336)
T PRK15408 150 KVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSL-QTAEGILKAYPDLDAIIAP--DANALPAAAQ 226 (336)
T ss_pred EEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcHHHHH-HHHHHHHHHCCCCcEEEEC--CCccHHHHHH
Confidence 66655442 112222222222 22 3444433 22222222222 2445566666789999987 3344557888
Q ss_pred HHHHhCC-CCEEEEEecCCCchHHHHHHcCC
Q 020236 196 AAKSIKP-AIRILAAEPIGANDAAQSKAAGR 225 (329)
Q Consensus 196 ~~k~~~~-~~~vi~v~~~~~~~~~~~~~~g~ 225 (329)
++++.+. ++.|+|... .+.+.++++.|.
T Consensus 227 Al~~~g~~~v~VvG~D~--~~~~~~~i~~G~ 255 (336)
T PRK15408 227 AAENLKRDKVAIVGFST--PNVMRPYVKRGT 255 (336)
T ss_pred HHHhCCCCCEEEEEeCC--cHHHHHHHhcCC
Confidence 8888763 677888762 334555666553
No 191
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=53.61 E-value=32 Score=34.42 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=40.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC------------------CCHHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN------------------APKCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~------------------~~~~~~~~~~~~Ga~v~~ 127 (329)
.+.|++-.+|-.|.+.|.+++++|.+++++=... ....+++.++.+|++++.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4678899999999999999999999977764221 123566778889998764
No 192
>PRK12744 short chain dehydrogenase; Provisional
Probab=53.55 E-value=95 Score=26.96 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=43.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC--CC---HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN--AP---KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~--~~---~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|..-...|.+++++.... .. +...+.++..|.++..+..| .++..+...+..++
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 4568888889999999999888899977665322 11 12234455667777666544 34444444444443
No 193
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.53 E-value=66 Score=29.37 Aligned_cols=46 Identities=33% Similarity=0.307 Sum_probs=31.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..+|...+|..|.+++..|+.+|.+++++... . +...++.+|++.+
T Consensus 180 ~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 180 TVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 33555566889999888999999886555432 2 5666677887633
No 194
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=53.18 E-value=1.1e+02 Score=28.16 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHc-CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHH---HHHHHHHHHH-cCCEe
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLR-GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSR---ESVASKVLEE-TGAVL 150 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~a~~~~~~-~~~~~ 150 (329)
..+++.++||-.|.-.|..=-.. |=++.++.-..-+..-.++.+.+|++|..++.+..+. .....++++. ++.++
T Consensus 68 ~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 68 AQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred CceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEE
Confidence 35688888887776655442222 3333333333335666778888999998887654322 3334444443 46666
Q ss_pred eCCCC
Q 020236 151 VHPYN 155 (329)
Q Consensus 151 ~~~~~ 155 (329)
+-+.+
T Consensus 148 v~hgd 152 (385)
T KOG2862|consen 148 VTHGD 152 (385)
T ss_pred EEecC
Confidence 66544
No 195
>PLN00175 aminotransferase family protein; Provisional
Probab=52.93 E-value=62 Score=30.83 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=32.4
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+..++..+- ++-.-.|++++-.-..-...++..|++++.++-
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 4666666677766555543 332334555554445556778889999998864
No 196
>PRK08303 short chain dehydrogenase; Provisional
Probab=52.90 E-value=1e+02 Score=27.95 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=44.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-----------CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-----------PKCKVENVVRYGGQVIWSEA---TMHSRESVASK 141 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-----------~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~ 141 (329)
+..+|+..++--|.++|..-...|.+++++..... -....+.+...|.+++.+.. +.++..+.+.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45577888888999999998889998777653211 11223455667777665543 35555666666
Q ss_pred HHHH
Q 020236 142 VLEE 145 (329)
Q Consensus 142 ~~~~ 145 (329)
..++
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 5554
No 197
>PRK06139 short chain dehydrogenase; Provisional
Probab=52.81 E-value=68 Score=29.57 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=44.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..||--|.++|......|.+++++..... -+...+.++..|+++..+..| .++..+.+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 34578888899999999998889998776653221 112234566778887655443 34444444444443
No 198
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=52.79 E-value=81 Score=29.39 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=32.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
+.|+...+|..|.+++..|+.+|...++.+ ..++.+++.++.+|++.+.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 344444568888888888888888433333 2346677777888886443
No 199
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=52.60 E-value=72 Score=29.04 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=31.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
..|+...+|..|.+++..++.+|+..++++ ..++.+...++.+|+.+
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 444444678999999999999997434444 23356667777788764
No 200
>PRK05839 hypothetical protein; Provisional
Probab=52.60 E-value=1.4e+02 Score=27.85 Aligned_cols=77 Identities=10% Similarity=-0.015 Sum_probs=40.6
Q ss_pred CCCccchhhHHHHHhcCchhc---cCCeEEEECCchHHHHHHHHHHHc-CCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 54 KGGAFKFRGASNAVLSLDEDQ---AIKGVVTHSSGNHAAALSLAAKLR-GIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 54 ptGS~KdR~a~~~l~~a~~~~---~~~~vv~~ssGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
|.|....|.+..-...- ..+ ....|+..+++..+..+...+-.. +-.-.|++|.-.-..-...++.+|++++.++
T Consensus 59 ~~G~~~lr~aia~~l~~-~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~ 137 (374)
T PRK05839 59 SAGEESLREAQRGFFKR-RFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMP 137 (374)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEee
Confidence 34766777554322110 111 234576666666665444333222 1223455555444444566788999999886
Q ss_pred CC
Q 020236 130 AT 131 (329)
Q Consensus 130 ~~ 131 (329)
-+
T Consensus 138 ~~ 139 (374)
T PRK05839 138 LT 139 (374)
T ss_pred cc
Confidence 53
No 201
>PRK08643 acetoin reductase; Validated
Probab=52.51 E-value=1.1e+02 Score=26.56 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=42.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH-HHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
..+|+..+|.-|.++|......|.+++++....... .....+...|.++..+..| .+...+..++..++
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDT 76 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457888899999999999888898776664332111 2223445567777666554 33444445555443
No 202
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=52.45 E-value=95 Score=27.34 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|......|.+++++..... .+...+.++..|.++..+..| .++..+..++..++
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 44578888899999999998889998777654321 122234455567777666554 33444444444443
No 203
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=52.38 E-value=1.1e+02 Score=25.96 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=38.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 131 (329)
..-+|+.++|..|.+++......|.+++++.....+ ....+.++..+.++..+..|
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 346888899999999999988889987666643321 12233455567787777654
No 204
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=52.29 E-value=1.1e+02 Score=28.10 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=27.8
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
.|+...+|..|.+++..|+.+|.+.++++. .++.+.+.++.+|++.+
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~ 221 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIV 221 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEE
Confidence 344444577777777777777775444432 24555666666676543
No 205
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=52.22 E-value=44 Score=32.05 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=38.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..+++++...|.-|..+|..++.+|.+++++ +.++.+....+.+|++++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 3578999999999999999999999975553 234556777778898765
No 206
>PRK08862 short chain dehydrogenase; Provisional
Probab=52.18 E-value=87 Score=26.94 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=42.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECC---CHHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEA---TMHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~~~~~ 145 (329)
+.-+|+..++.-|.++|......|.+++++-. +.. +...+.++..|.+++.+.- +.++..+..++..++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r-~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQ-DQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcC-CHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 34577788888999999998889998666533 222 1223445566777654432 344455555555544
No 207
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=51.98 E-value=1e+02 Score=28.70 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=25.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+.|+...+|.-|..++..|+.+|.+++++.... ..+....+.+|++-+
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~v 232 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSF 232 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEE
Confidence 344445567777777777777776644433221 222334455676533
No 208
>PRK05872 short chain dehydrogenase; Provisional
Probab=51.90 E-value=87 Score=28.11 Aligned_cols=31 Identities=26% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
+..+|+..+|.-|.++|......|.+++++-
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4568888899999999999888998766554
No 209
>PRK06182 short chain dehydrogenase; Validated
Probab=51.87 E-value=1.5e+02 Score=25.99 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=44.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~ 145 (329)
...+|+.++|.-|.++|......|.+++++... ..+++.+...+.+++.++- +.++..+..+++.++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 345788888999999999988889988776532 3344555556777776664 344445555555444
No 210
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=51.79 E-value=88 Score=28.97 Aligned_cols=53 Identities=6% Similarity=-0.101 Sum_probs=35.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
..|+..+++..+..++..+-.-| + .|++|.-.-..-...++.+|++++.++-+
T Consensus 75 ~~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 127 (360)
T PRK07392 75 EWILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPLP 127 (360)
T ss_pred hhEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEecc
Confidence 45777777777777665442223 3 45556555566678888899999988653
No 211
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.47 E-value=2.3e+02 Score=27.14 Aligned_cols=50 Identities=4% Similarity=0.042 Sum_probs=34.6
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH-cCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR-YGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~~ 130 (329)
+++....|+.|..+|..-...|.+++++-+ ++.+.+.++. .|.+++.-+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~---~~~~~~~~~~~~~~~~~~gd~ 52 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDT---DEERLRRLQDRLDVRTVVGNG 52 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEEC---CHHHHHHHHhhcCEEEEEeCC
Confidence 466667899999999998888998876643 2444555544 5666665443
No 212
>PLN02740 Alcohol dehydrogenase-like
Probab=51.38 E-value=86 Score=29.37 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=30.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+.|+....|.-|.+++..|+.+|.+-++.+ +.++.+++..+.+|++.+
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 247 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDF 247 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEE
Confidence 445554568888888888888887433333 224566777777887643
No 213
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=51.36 E-value=84 Score=28.19 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=46.5
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
+...+|+..|+.-|.++|..-++.|.+++++-..... ..+.+.-+.+|.++...+-| .++..+...++..
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 3456899999999999999999999999999865321 22223334467777666554 3444444444444
No 214
>PRK08354 putative aminotransferase; Provisional
Probab=51.16 E-value=1.2e+02 Score=27.46 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=35.1
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHH
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHS 134 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 134 (329)
.|+..+++..+..+....-..| -.|++|.-.-..-...++.+|++++.++.+.+.
T Consensus 56 ~I~vt~G~~~al~~~~~~~~~g--d~vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~ 110 (311)
T PRK08354 56 PIVITAGITEALYLIGILALRD--RKVIIPRHTYGEYERVARFFAARIIKGPNDPEK 110 (311)
T ss_pred CEEECCCHHHHHHHHHHhhCCC--CeEEEeCCCcHHHHHHHHHcCCEEeecCCCHHH
Confidence 4666666777766554322234 245556555566677888999999988766544
No 215
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=51.12 E-value=72 Score=31.13 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPK 108 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~ 108 (329)
+.|..+..|-.+.-++.+|+.+|++++++.++
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~ 34 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSE 34 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 46788899999999999999999998887654
No 216
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.10 E-value=1e+02 Score=23.03 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=33.1
Q ss_pred HHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEec
Q 020236 168 LEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEP 211 (329)
Q Consensus 168 ~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~ 211 (329)
.+++++.+ +.+.+++.++.=..-.-++..+|+.+|..++++.-.
T Consensus 52 ~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 52 PEVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 35666665 678999998886666667778898899999887643
No 217
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=50.91 E-value=1.2e+02 Score=28.08 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=32.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH-HcCCEEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV-RYGGQVIW 127 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~ 127 (329)
.+|.+.+|..|..+...|+.+|.+++++. .++.+.+.++ .+|++-+.
T Consensus 162 VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 162 VFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred EEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 34555668899888888999998754432 2456777776 68886544
No 218
>PRK14030 glutamate dehydrogenase; Provisional
Probab=50.84 E-value=58 Score=31.52 Aligned_cols=47 Identities=23% Similarity=0.053 Sum_probs=36.0
Q ss_pred hhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 60 FRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 60 dR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
-|+..+.+..+.+..+ ..+|++-..||-|..+|.....+|.+++.+-
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3666676666544332 4678888999999999999999999888854
No 219
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=50.84 E-value=1.7e+02 Score=26.30 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=33.6
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS 128 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 128 (329)
.+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|++.+..
T Consensus 144 vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 144 VLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILIR 191 (334)
T ss_pred EEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEe
Confidence 35555679999999999999998765543 2355666677788864443
No 220
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=50.76 E-value=87 Score=28.53 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=28.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
+.|+...+|..|.+++..|+.+|.+++++.+ ++.++..++.+|++
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 209 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAH 209 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCc
Confidence 3444444788888888888888876544432 34456666777764
No 221
>PRK07454 short chain dehydrogenase; Provisional
Probab=50.69 E-value=93 Score=26.61 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=42.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+.-+|+.++|..|.+++......|.+++++...... ....+.+...+.++..+..| .++..+..++..++
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345788889999999999998899987776532211 12223344556666555443 44444444444443
No 222
>PRK06108 aspartate aminotransferase; Provisional
Probab=50.53 E-value=1e+02 Score=28.62 Aligned_cols=75 Identities=20% Similarity=0.088 Sum_probs=40.6
Q ss_pred CCCccchhhHHHHHhcCchh--ccCCeEEEECCchHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 54 KGGAFKFRGASNAVLSLDED--QAIKGVVTHSSGNHAAALSLAAKL-RGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 54 ptGS~KdR~a~~~l~~a~~~--~~~~~vv~~ssGN~g~a~A~~a~~-~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
+.|....|.+.......... -....|+..++|..+..++..+-. .|= .|+++...-..-...++.+|++++.++.
T Consensus 60 ~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~v~~ 137 (382)
T PRK06108 60 NLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGD--EVVAVTPLWPNLVAAPKILGARVVCVPL 137 (382)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCC--EEEEeCCCccchHHHHHHCCCEEEEeeC
Confidence 34666666554432210000 123457777778888776665432 232 3444433323334567889999988765
No 223
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=50.52 E-value=55 Score=24.99 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=35.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
+.|+.+.+|-.+.-+..+++.+|++++++..+..+. ..-..+--+++..+
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~---s~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTV---STHVDMADEAYFEP 52 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTT---GHHHHHSSEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcc---cccccccccceecC
Confidence 468889999999999999999999999887543211 11223345677776
No 224
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=50.29 E-value=61 Score=32.24 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=32.4
Q ss_pred CeEEEECCchHH---HHHHHHHHHcCCCEEEEEcCCCCHH----HHHHHHHcCCEE
Q 020236 77 KGVVTHSSGNHA---AALSLAAKLRGIPAYIVIPKNAPKC----KVENVVRYGGQV 125 (329)
Q Consensus 77 ~~vv~~ssGN~g---~a~A~~a~~~G~~~~i~~p~~~~~~----~~~~~~~~Ga~v 125 (329)
+.+|.+..||.| ..+|......|+++.|++|...... ..++++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 456777888766 4555556677999999998754332 345566667554
No 225
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=50.28 E-value=74 Score=29.96 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=34.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+.+.++..++|..+..++..+-..+=.-.|++|...-......+...|+++++++-+
T Consensus 45 g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 45 GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 345566667776665555443322222456667665555666667788888888653
No 226
>PRK05826 pyruvate kinase; Provisional
Probab=50.05 E-value=1.7e+02 Score=28.59 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCEEEEE-----------cCCCCHHHHHHHHHcCCEEEEECC------CHHHHHHHHHHHHHH-cCCEee
Q 020236 90 ALSLAAKLRGIPAYIVI-----------PKNAPKCKVENVVRYGGQVIWSEA------TMHSRESVASKVLEE-TGAVLV 151 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~-----------p~~~~~~~~~~~~~~Ga~v~~~~~------~~~~~~~~a~~~~~~-~~~~~~ 151 (329)
-+...|+..|.++++-. |..+.-.-+...-..|++-+...+ ...++.+...+.+++ +..++-
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 45566899999988742 333333345556667999665543 244555555554443 111111
Q ss_pred CCCC----Cc--ccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236 152 HPYN----DG--RIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA 214 (329)
Q Consensus 152 ~~~~----n~--~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~ 214 (329)
..+. +. .........+.++..+++..+.||+.+-+|.+.-.+ ....|...|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~i----sk~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 343 NLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLI----SRFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHH----HhhCCCCCEEEEcCCHH
Confidence 1010 00 011222223345555664467899999999876544 44678999999987643
No 227
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=49.95 E-value=1.3e+02 Score=27.77 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=31.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
+.|+...+|-.|.+++..|+.+|.+.++.+. .++.+.+.++.+|++-
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~ 224 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATH 224 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCce
Confidence 3444445688888888888888886444442 2456777777888753
No 228
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=49.83 E-value=1.1e+02 Score=27.76 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=28.2
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
+|...+|..|.+++..|+.+|.+++++... +.+.+.++.+|++-
T Consensus 170 lV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 213 (341)
T cd08297 170 VISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADA 213 (341)
T ss_pred EEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 444455668888888888888866555332 34555666677553
No 229
>PRK08912 hypothetical protein; Provisional
Probab=49.80 E-value=86 Score=29.36 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=33.1
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+..++..+-. +-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 89 ~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 89 EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 57777777887765555432 22234555554444556677899999987764
No 230
>PRK05876 short chain dehydrogenase; Provisional
Probab=49.74 E-value=1.1e+02 Score=27.02 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=43.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|..-...|.+++++..... -....+.++..|.++..+..| .++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45688888999999999998889998665542211 112233455667777655543 44444455554444
No 231
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=49.73 E-value=1.3e+02 Score=27.60 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
...|+...+|..|.+++..|+.+|...++.+.. ++.+.+.++.+|++.+
T Consensus 175 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 175 DDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 344555667888888888899999876666543 3566777788887544
No 232
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.68 E-value=68 Score=27.60 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=44.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
..-+|+..+|.-|..++..-...|.+++++...+.. +...+.++..|.++..+..| .++..+..++..+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDE 78 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 356888889999999999988889987765443322 22334566678887766554 3333344444433
No 233
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=49.62 E-value=1.3e+02 Score=27.82 Aligned_cols=48 Identities=15% Similarity=-0.000 Sum_probs=28.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..++...+|-.|.+++..|+.+|.+++++... ++.+...++.+|++.+
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 34444456888888888888888875554432 1222334456887643
No 234
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.59 E-value=67 Score=34.45 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
.+.|++-.+|-.|.+.|+..++.|++++||=.....-..+. +| +.--.-..+..+.-.+..++.|.-+...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~----yG---IP~~rlp~~vi~~~i~~l~~~Gv~f~~n-- 376 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR----YG---IPEFRLPNQLIDDVVEKIKLLGGRFVKN-- 376 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE----cc---CCCCcChHHHHHHHHHHHHhhcCeEEEe--
Q ss_pred CcccccccCcchHHHHhhCCCCCEEEEeCCCC
Q 020236 156 DGRIISGQGTISLEFLEQVPLLDTIIVPISGG 187 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtG 187 (329)
...|...+..++.++ .+|+||+++|++
T Consensus 377 ---~~vG~dit~~~l~~~--~yDAV~LAtGA~ 403 (944)
T PRK12779 377 ---FVVGKTATLEDLKAA--GFWKIFVGTGAG 403 (944)
T ss_pred ---EEeccEEeHHHhccc--cCCEEEEeCCCC
No 235
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=49.48 E-value=20 Score=30.79 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=52.4
Q ss_pred EEEEe--CCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCC
Q 020236 179 TIIVP--ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVD 256 (329)
Q Consensus 179 ~vv~~--~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~ 256 (329)
.|+|= +-||.|+-+..+.++...|+--+++| |-.+....+.+.+ .++.+-+-..+..|.....++.
T Consensus 127 VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV-PV~p~~a~~~l~s-----------~~D~vvc~~~P~~F~AVg~~Y~ 194 (220)
T COG1926 127 VILVDDGIATGATMKAAVRALRAKGPKEIVIAV-PVAPEDAAAELES-----------EADEVVCLYMPAPFEAVGEFYR 194 (220)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc-ccCCHHHHHHHHh-----------hcCeEEEEcCCccHHHHHHHHH
Confidence 44443 56799999999999988876555555 4443334443332 1122222123444677777888
Q ss_pred cEEEeCHHHHHHHHHHH
Q 020236 257 DVITVEDKEIIEAMKLC 273 (329)
Q Consensus 257 ~~~~V~d~e~~~a~~~l 273 (329)
++..+||+|..+-++..
T Consensus 195 dF~q~sdeEV~~lL~~a 211 (220)
T COG1926 195 DFRQVSDEEVRALLRRA 211 (220)
T ss_pred HHhhcCHHHHHHHHHhc
Confidence 89999999988777654
No 236
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.46 E-value=85 Score=27.88 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=33.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..++...+|..|.+++..|+.+|.+++...+ ++.+...++.+|+...
T Consensus 135 ~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 181 (305)
T cd08270 135 RVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEV 181 (305)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 3355556689999999999999987555432 3567777777887633
No 237
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=49.31 E-value=65 Score=26.41 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=40.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
...++.-.+||.|.+.+..+..+|.+++++ + ....+++..+..++..+.++
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d-~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVP--D-ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEE--E-SSHHHHHHHHHTTTEESEET
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEec--c-CCHHHHHhhhcccCceEEEc
Confidence 356888899999999999999999886665 2 34667788889999988885
No 238
>PTZ00376 aspartate aminotransferase; Provisional
Probab=49.20 E-value=1.8e+02 Score=27.55 Aligned_cols=76 Identities=18% Similarity=0.088 Sum_probs=43.6
Q ss_pred CCCCccchhhHHHHHhcCchhc----cCCeEEE--ECCchHHHHHHHHH--HHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 53 QKGGAFKFRGASNAVLSLDEDQ----AIKGVVT--HSSGNHAAALSLAA--KLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 53 nptGS~KdR~a~~~l~~a~~~~----~~~~vv~--~ssGN~g~a~A~~a--~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
.+.|.-..|.+...... ... ....|+. ...|+.+..++..+ ...+-.-.|++|+-.-..-...++..|++
T Consensus 70 ~~~G~~~lR~aia~~~~--~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~ 147 (404)
T PTZ00376 70 PIEGLQSFIEAAQKLLF--GEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLN 147 (404)
T ss_pred CCCCCHHHHHHHHHHhc--CCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCc
Confidence 34587778876654321 111 1223552 44566666665432 22322245666665555667788999999
Q ss_pred EEEECC
Q 020236 125 VIWSEA 130 (329)
Q Consensus 125 v~~~~~ 130 (329)
++.++-
T Consensus 148 ~~~v~l 153 (404)
T PTZ00376 148 VKEYRY 153 (404)
T ss_pred eeeccc
Confidence 998874
No 239
>PRK06194 hypothetical protein; Provisional
Probab=49.13 E-value=1.3e+02 Score=26.62 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
...+|+..+|.-|.++|......|.+++++-.... .......+...|.++..+..| .++..+...+..++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34688888999999999998888998766543211 112233444557787766654 34444444444443
No 240
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.05 E-value=1.8e+02 Score=28.01 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=39.5
Q ss_pred CCCCCccchhhHHHHHhcCchhccCCeEEEECCch--HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH----cCCEE
Q 020236 52 FQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGN--HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR----YGGQV 125 (329)
Q Consensus 52 ~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN--~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~----~Ga~v 125 (329)
.+|+|+=|.-.+..+...+..++....++++-+.. ..-.+..++...|+++++.. .+..-.+.++. .+.++
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L~~aL~~lk~~~~~Dv 323 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDY 323 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHHHHHHHHHHhccCCCE
Confidence 56777778777776665543332233344443322 23345566777787766432 11222223322 25677
Q ss_pred EEECC
Q 020236 126 IWSEA 130 (329)
Q Consensus 126 ~~~~~ 130 (329)
+++|.
T Consensus 324 VLIDT 328 (436)
T PRK11889 324 ILIDT 328 (436)
T ss_pred EEEeC
Confidence 77764
No 241
>PRK07201 short chain dehydrogenase; Provisional
Probab=48.90 E-value=77 Score=32.07 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=40.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
.-+|+..+|.-|.+++..-...|.+++++...... ....+.++..|.++..+..| .++..+..++..++
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 34777888999999998877789887776543211 12233345556666655443 33444444444443
No 242
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=48.78 E-value=74 Score=30.26 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=53.4
Q ss_pred CccchhhHHHHHhcCchhcc----CCe-EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 56 GAFKFRGASNAVLSLDEDQA----IKG-VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 56 GS~KdR~a~~~l~~a~~~~~----~~~-vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
|.-..|-+..--.. ++.+ ... |+...++..|..++..+-.-.=+- |++|+-.-+.-...++..|++++.++-
T Consensus 66 G~~~LReaia~~~~--~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDe-Vlip~P~Y~~y~~~~~~~gg~~v~v~l 142 (393)
T COG0436 66 GIPELREAIAEKYK--RRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDE-VLIPDPGYPSYEAAVKLAGGKPVPVPL 142 (393)
T ss_pred CCHHHHHHHHHHHH--HHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCE-EEEeCCCCcCHHHHHHhcCCEEEEEeC
Confidence 76666665443221 2211 223 777777778777777665433332 333433334456778889999999873
Q ss_pred C-----HH-HHHHHHHHHHHHcCCEeeCCCCCcc
Q 020236 131 T-----MH-SRESVASKVLEETGAVLVHPYNDGR 158 (329)
Q Consensus 131 ~-----~~-~~~~~a~~~~~~~~~~~~~~~~n~~ 158 (329)
+ +. +..+..+....+....++|.-+||-
T Consensus 143 ~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPT 176 (393)
T COG0436 143 DEEENGFKPDLEDLEAAITPKTKAIILNSPNNPT 176 (393)
T ss_pred CcCccCCcCCHHHHHhhcCccceEEEEeCCCCCc
Confidence 2 22 1222222233334567776545553
No 243
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=48.68 E-value=1e+02 Score=28.78 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=40.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.+.|.....|-.|.....+|+.+|.+++.+. .++.|++..+.+||+.+....
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEcC
Confidence 4567777778788877888888897777774 467888888999998876644
No 244
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=48.52 E-value=96 Score=28.78 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=32.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..|+...+|..|.+++..++.+|...++.+.. ++.+++.++.+|++-+
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 44444467888888888899999853433322 4567777788888533
No 245
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=48.52 E-value=96 Score=28.58 Aligned_cols=52 Identities=8% Similarity=-0.061 Sum_probs=30.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCC---EEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIP---AYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~---~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+.-++..+- .+-. -.|++|.-.-..-....+.+|++++.++-
T Consensus 62 ~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~ 116 (350)
T TIGR03537 62 QVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKL 116 (350)
T ss_pred cEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEccc
Confidence 5666555555554433322 2211 25666655445556667889999998764
No 246
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=48.51 E-value=79 Score=29.80 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.8
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
.+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 193 vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 193 VLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVI 239 (398)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEe
Confidence 34555669999999999999999865553 245677788889987654
No 247
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=48.41 E-value=1.3e+02 Score=28.72 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=74.1
Q ss_pred CCCCCccchhhHHHHHhcCchhccC--CeEEEECC---chHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 52 FQKGGAFKFRGASNAVLSLDEDQAI--KGVVTHSS---GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 52 ~nptGS~KdR~a~~~l~~a~~~~~~--~~vv~~ss---GN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..|||-=|.-...-+.....-..+. .++|+--+ |- --.+-.||..+|+|+.++.+...-..-+..|+.+ +++
T Consensus 209 VGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA-~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~--d~I 285 (407)
T COG1419 209 VGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA-VEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC--DVI 285 (407)
T ss_pred ECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH-HHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC--CEE
Confidence 4689888887666555443211222 33444322 22 2357789999999999988654444445566655 888
Q ss_pred EECC---CHHHHHHHHHHHHHHcCCEeeCCCCCccc--ccccCcchHHHHhhCC--CCCEEEEe----CCCChHHHHH
Q 020236 127 WSEA---TMHSRESVASKVLEETGAVLVHPYNDGRI--ISGQGTISLEFLEQVP--LLDTIIVP----ISGGGLISGV 193 (329)
Q Consensus 127 ~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~n~~~--~~g~~t~~~Ei~~ql~--~~d~vv~~----~GtGg~~~Gi 193 (329)
.||. ++.+. ....++.+--... ++-.+.+. .........||++|.. .+|.++.. +.+=|++..+
T Consensus 286 LVDTaGrs~~D~-~~i~el~~~~~~~--~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~ 360 (407)
T COG1419 286 LVDTAGRSQYDK-EKIEELKELIDVS--HSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSL 360 (407)
T ss_pred EEeCCCCCccCH-HHHHHHHHHHhcc--ccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHHHHH
Confidence 8875 22221 1222332211100 11111121 2224456679999988 68888776 5554544433
No 248
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=48.31 E-value=81 Score=28.78 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=29.7
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
.++....|..|.++...|+.+|.+.++++ ..++.+...++.+|++.
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~ 211 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATR 211 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcE
Confidence 33334567788888888888887544444 34456667777777754
No 249
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=48.25 E-value=72 Score=28.37 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=63.9
Q ss_pred HHHHHHHH-HHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccC
Q 020236 88 AAALSLAA-KLRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQG 164 (329)
Q Consensus 88 g~a~A~~a-~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~ 164 (329)
|.++-+++ +.+|-+..--+|.. .-..-.+.+..-|-.|.++++..+-..+.+.++.++. +.-++-. . .||-
T Consensus 72 G~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~-h-----~GYf 145 (253)
T COG1922 72 GIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGS-H-----DGYF 145 (253)
T ss_pred chhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEe-c-----CCCC
Confidence 57788888 67777765333321 1122233333346668999888777677777777663 2322221 1 1333
Q ss_pred cchH--HHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236 165 TISL--EFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA 209 (329)
Q Consensus 165 t~~~--Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v 209 (329)
+--. .|.+.+. +||.++|+.|.-.==-=+.. .+...+..-.+||
T Consensus 146 ~~~e~~~i~~~I~~s~pdil~VgmG~P~QE~wi~~-~~~~~~~~v~igV 193 (253)
T COG1922 146 DPEEEEAIVERIAASGPDILLVGMGVPRQEIWIAR-NRQQLPVAVAIGV 193 (253)
T ss_pred ChhhHHHHHHHHHhcCCCEEEEeCCCchhHHHHHH-hHHhcCCceEEec
Confidence 3333 3666665 69999999998653322222 2233344545555
No 250
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=48.24 E-value=1.9e+02 Score=25.22 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=33.8
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEEecCCCchHHHHHHcCC
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIK--PAIRILAAEPIGANDAAQSKAAGR 225 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~--~~~~vi~v~~~~~~~~~~~~~~g~ 225 (329)
.++++-+++|.||+. .....|+..++++.+ .+++|+|.. .++.+.+.++.|.
T Consensus 177 ~~l~~~~~~~~i~~~---d~~a~~~~~~l~~~g~p~di~vig~~--~~p~~~~~l~~g~ 230 (268)
T cd06306 177 EALEAHPDIDYIVGS---AVAAEAAVGILRQRGLTDQIKIVSTY--LSHAVYRGLKRGK 230 (268)
T ss_pred HHHHhCCCcCEEeec---chhhhHHHHHHHhcCCCCCeEEEecC--CCHHHHHHHHcCc
Confidence 444444568988753 566778899998877 357888763 3444666666554
No 251
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=48.18 E-value=84 Score=28.82 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=31.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
++|+....|..|.+++..|+.+|.+.++.+. .++.+++.++.+|++-+
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 3444445688888888888888887544442 24556666777777533
No 252
>PRK05867 short chain dehydrogenase; Provisional
Probab=47.81 E-value=1.2e+02 Score=26.20 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=43.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|.-|.++|..-...|.+++++..... .+...+.++..|.++..+..| .+...+..++..++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345688888899999999998888998766543211 112233455567676655443 44445555555444
No 253
>PRK07791 short chain dehydrogenase; Provisional
Probab=47.70 E-value=1.3e+02 Score=26.80 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=44.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN----------APKCKVENVVRYGGQVIWSEAT---MHSRESVASKV 142 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~----------~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~ 142 (329)
+..+|+..++.-|.++|......|.+++++.... ......+.++..|.++..+..| .++..+..++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4568888888999999999888999877664221 0112234455567777655443 44555555555
Q ss_pred HHH
Q 020236 143 LEE 145 (329)
Q Consensus 143 ~~~ 145 (329)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 554
No 254
>PRK06720 hypothetical protein; Provisional
Probab=47.65 E-value=1.6e+02 Score=24.22 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=23.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+..+|+..++--|.++|......|.+++++-.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r 48 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDI 48 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 34577777888899999888788887665543
No 255
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=47.63 E-value=83 Score=29.58 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=33.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++.++..++..+- .+-.-.|+++...-..-...++.+|++++.++.
T Consensus 92 ~~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (391)
T PRK07309 92 NEILVTIGATEALSASLTAI-LEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT 144 (391)
T ss_pred CcEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec
Confidence 45777777788877665543 222234555544333345677889999988865
No 256
>PRK04148 hypothetical protein; Provisional
Probab=47.61 E-value=81 Score=25.09 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=40.0
Q ss_pred HHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 63 ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 63 a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
+.++...+ ...+...+++-..| +|.++|..-+..|..++.+ +.++..++.++..+.+++..+
T Consensus 5 ~~~l~~~~-~~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 5 AEFIAENY-EKGKNKKIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred HHHHHHhc-ccccCCEEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECc
Confidence 34444443 22234567887888 8877887777889876665 445556777777777766543
No 257
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.58 E-value=1.9e+02 Score=25.27 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=26.2
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC---C-CCEEEE
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIK---P-AIRILA 208 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~---~-~~~vi~ 208 (329)
+++++.++||+|||+ +.....|+..++++.+ | ++.|+|
T Consensus 171 ~~l~~~~~~~ai~~~--~d~~A~gvl~al~~~gl~vP~dvsvig 212 (269)
T cd06287 171 QLLAQHPDLDALCVP--VDAFAVGAVRAATELGRAVPDQLRVVT 212 (269)
T ss_pred HHHhCCCCCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 344443468999877 5667778899998876 2 456666
No 258
>PRK08068 transaminase; Reviewed
Probab=47.42 E-value=77 Score=29.73 Aligned_cols=52 Identities=13% Similarity=-0.027 Sum_probs=31.8
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..++|..+..++..+ ..+-.-.|++|.-.-..-...++..|++++.++-
T Consensus 96 ~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 147 (389)
T PRK08068 96 EVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMPL 147 (389)
T ss_pred cEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeec
Confidence 466666666776654332 2333345666655444445667889999998865
No 259
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=47.41 E-value=82 Score=29.54 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=35.7
Q ss_pred CeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 77 KGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 77 ~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
..|+. ..+|..|.+++..++.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 34444 4569999999999999999876554 356778888889986543
No 260
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=47.40 E-value=1.6e+02 Score=25.54 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=44.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|.-|.++|......|.++++......+ ....+.++..|.++..+..| .+...+...+..++
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456888889999999999988899887776553322 22344556668777655443 33334444444443
No 261
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=47.33 E-value=91 Score=30.07 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=35.2
Q ss_pred eEEEECC---chHHHHHHHHHHHc-CCCEEEEEcCCC--CHHHHHHHHHcCCEEEEEC
Q 020236 78 GVVTHSS---GNHAAALSLAAKLR-GIPAYIVIPKNA--PKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 78 ~vv~~ss---GN~g~a~A~~a~~~-G~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 129 (329)
+|+.... +|.+.|++.+++.+ |++++++.|++- ++..++.++..|..|...+
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 4444444 68889988885554 999999888873 3444555666677776654
No 262
>PRK07681 aspartate aminotransferase; Provisional
Probab=47.28 E-value=87 Score=29.54 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=31.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+- .+-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 94 ~~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 146 (399)
T PRK07681 94 KEVLLLMGSQDGLVHLPMVY-ANPGDIILVPDPGYTAYETGIQMAGATSYYMPL 146 (399)
T ss_pred CeEEECCCcHHHHHHHHHHh-CCCCCEEEECCCCccchHHHHHhcCCEEEEEec
Confidence 45777677777766554432 222234555544434445667889999998864
No 263
>PTZ00377 alanine aminotransferase; Provisional
Probab=47.28 E-value=98 Score=30.16 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=34.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+-..+=.-.|++|.-.-..-...++.+|++++.++-
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 457777777777776665432111234555655555566778889999998764
No 264
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=47.28 E-value=1.5e+02 Score=28.31 Aligned_cols=70 Identities=13% Similarity=-0.019 Sum_probs=39.4
Q ss_pred cCCeEEEECCchHHHH--HHHHHHHcCCCEEEEEcCCCC-H------------HHHHHHHHcCCEEEEECCC---HHHHH
Q 020236 75 AIKGVVTHSSGNHAAA--LSLAAKLRGIPAYIVIPKNAP-K------------CKVENVVRYGGQVIWSEAT---MHSRE 136 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a--~A~~a~~~G~~~~i~~p~~~~-~------------~~~~~~~~~Ga~v~~~~~~---~~~~~ 136 (329)
++..+|+..|+..|.| +|.+. ..|.+++++.-...+ . ...+.++..|..+..+..| .+...
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~ 119 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQ 119 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 3456788888878877 56666 788887776522111 1 1233456678765544433 33344
Q ss_pred HHHHHHHHH
Q 020236 137 SVASKVLEE 145 (329)
Q Consensus 137 ~~a~~~~~~ 145 (329)
+..+++.++
T Consensus 120 ~lie~I~e~ 128 (398)
T PRK13656 120 KVIELIKQD 128 (398)
T ss_pred HHHHHHHHh
Confidence 445555554
No 265
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=47.10 E-value=2.5e+02 Score=26.43 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=40.7
Q ss_pred CCeEEEEecC-C--CCCCccchhhHHHH--HhcCchhccCCe-EEEECCch--HHHHHHHHHHHcCCCEEEEEcCCC
Q 020236 42 GRSLFFKCEC-F--QKGGAFKFRGASNA--VLSLDEDQAIKG-VVTHSSGN--HAAALSLAAKLRGIPAYIVIPKNA 110 (329)
Q Consensus 42 g~~i~~K~E~-~--nptGS~KdR~a~~~--l~~a~~~~~~~~-vv~~ssGN--~g~a~A~~a~~~G~~~~i~~p~~~ 110 (329)
|.+ ++|++- + ||..++++|....+ +..+.++.+.+. .+..-++. -...-|..++..|.+++.+.|-..
T Consensus 154 GvD-~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~~ 229 (364)
T cd08210 154 GID-IIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGLT 229 (364)
T ss_pred CCC-eeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 344 456664 3 47799999976543 334433334433 44444443 334556678999999998887654
No 266
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=46.99 E-value=77 Score=26.21 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=41.5
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCC-----CCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHH
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKN-----APKCKVENVVRYGGQVIWSEAT---MHSRESVASKVL 143 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~ 143 (329)
+|+...|..|..+|..-...+-.-++++.+. .....++.++..|++|..+..| .++..+...++.
T Consensus 4 litGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~ 76 (181)
T PF08659_consen 4 LITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLR 76 (181)
T ss_dssp EEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSH
T ss_pred EEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHH
Confidence 6777889999999999666666555555443 2335788889999999977654 444444444443
No 267
>PRK12831 putative oxidoreductase; Provisional
Probab=46.88 E-value=81 Score=30.67 Aligned_cols=52 Identities=23% Similarity=0.114 Sum_probs=38.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC---CC--HHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN---AP--KCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~---~~--~~~~~~~~~~Ga~v~~ 127 (329)
.+.|++-.+||.|.-+|..+.++|.+++++..+. .+ ...++.++..|.+++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 4678888999999999999999999988887643 22 2334455666766653
No 268
>PRK08278 short chain dehydrogenase; Provisional
Probab=46.77 E-value=1.7e+02 Score=25.76 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--------KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
+..+|+..+|--|.++|......|.+++++.....+ ....+.++..|.+++.+..| .++..+...+..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 86 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAVE 86 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 345788888999999999988899988777653321 11223456677777665543 3334444444433
No 269
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=46.72 E-value=1.4e+02 Score=25.47 Aligned_cols=70 Identities=21% Similarity=0.144 Sum_probs=43.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|......|.+++++...... ......+...|.+++....| .++..+..++..+.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 345888899999999999988899887665432211 12344455668887755443 34444444444443
No 270
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=46.70 E-value=68 Score=29.40 Aligned_cols=52 Identities=12% Similarity=-0.072 Sum_probs=33.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
..|+..+++..+..++... ++- -.+++++-.-..-....+..|++++.++-+
T Consensus 58 ~~I~it~Gs~~~l~~~~~~--~~~-~~vv~~~P~y~~y~~~~~~~G~~v~~vp~~ 109 (332)
T PRK06425 58 IKVLIGPGLTHFIYRLLSY--INV-GNIIIVEPNFNEYKGYAFTHGIRISALPFN 109 (332)
T ss_pred ceEEECCCHHHHHHHHHHH--hCC-CcEEEeCCChHHHHHHHHHcCCeEEEEeCC
Confidence 4477767777777666542 322 234455444455667788999999988753
No 271
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=46.67 E-value=1.6e+02 Score=23.95 Aligned_cols=117 Identities=19% Similarity=0.127 Sum_probs=63.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHH-----------HHHHHcCCEEEEECCCHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKV-----------ENVVRYGGQVIWSEATMHSRESVASKVL 143 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~-----------~~~~~~Ga~v~~~~~~~~~~~~~a~~~~ 143 (329)
..+.++....|+-|...+..-...|..++++-|+-..+.+. +.-...++.+++.-.+.++.-....+.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQAA 91 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHHHH
Confidence 34568888899999888887777888888886654322110 0011235555554433334334444555
Q ss_pred HHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHh
Q 020236 144 EETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200 (329)
Q Consensus 144 ~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~ 200 (329)
++.. ++|-.++|... ..+.+-+. .. +-+.++++|+|..-.+++.+|+.
T Consensus 92 ~~~~--~vn~~d~~~~~---~f~~pa~v---~~-~~l~iaisT~G~sP~la~~lr~~ 139 (157)
T PRK06719 92 HDFQ--WVNVVSDGTES---SFHTPGVI---RN-DEYVVTISTSGKDPSFTKRLKQE 139 (157)
T ss_pred HHCC--cEEECCCCCcC---cEEeeeEE---EE-CCeEEEEECCCcChHHHHHHHHH
Confidence 5433 33333333211 01111111 12 33778888888888888887764
No 272
>PRK06207 aspartate aminotransferase; Provisional
Probab=46.66 E-value=1.2e+02 Score=28.80 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=32.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+- ..-.-.|+++.-.-..-...++.+|++++.++-
T Consensus 103 ~~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 155 (405)
T PRK06207 103 DELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQL 155 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHHHHHcCCEEEEEec
Confidence 45777777777776555432 222223444444444556788899999987764
No 273
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=46.28 E-value=1.3e+02 Score=27.17 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=23.5
Q ss_pred ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-+
T Consensus 151 ~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 192 (324)
T cd08291 151 AAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYV 192 (324)
T ss_pred cCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 45566666666666666665433322 3445555566666543
No 274
>PRK07806 short chain dehydrogenase; Provisional
Probab=46.09 E-value=1.7e+02 Score=25.09 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=42.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
+..+|+..+|.-|.+++......|.+++++...... ..-...++..|.++..+..| .++..+..+++.+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456788888999999999988889988776543211 11123345557766655543 3444444444433
No 275
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=46.06 E-value=1.7e+02 Score=27.45 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=26.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+.|+...+|..|.+++..|+.+|.+++++.+. ++.+.+.++.+|++.+
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 34444455777777777777777664443322 1223445566676533
No 276
>PLN02527 aspartate carbamoyltransferase
Probab=46.05 E-value=1.2e+02 Score=27.89 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHhcccc-CCCCCccc-hhhhhhcCCeEEEEec--CCCCCCccchhhHHHHHhcCchhccCCeEEEECC--
Q 020236 11 NFSSIKEAQKRISLYI-HKTPVLSS-ETLNSMSGRSLFFKCE--CFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSS-- 84 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~i-~~TPl~~~-~~l~~~~g~~i~~K~E--~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ss-- 84 (329)
++.|......+..+.| -+||-... ..+++...+.|.==.. ..+|+-..=|- +.+....-.....+|+....
T Consensus 85 s~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl---~Ti~e~~g~l~g~kva~vGD~~ 161 (306)
T PLN02527 85 TLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDV---YTIQREIGRLDGIKVGLVGDLA 161 (306)
T ss_pred CHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHH---HHHHHHhCCcCCCEEEEECCCC
Confidence 3444445555555433 34443332 3344444555442222 24565433332 22211100111234444443
Q ss_pred -chHHHHHHHHHHHc-CCCEEEEEcCC--CCHHHHHHHHHcCCEEEEEC
Q 020236 85 -GNHAAALSLAAKLR-GIPAYIVIPKN--APKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 85 -GN~g~a~A~~a~~~-G~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~ 129 (329)
+|.+.+++.++.++ |+.++++.|+. .++...+.++..|.++...+
T Consensus 162 ~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 162 NGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred CChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46899999997776 99999999987 34444555666677766554
No 277
>PRK12827 short chain dehydrogenase; Provisional
Probab=46.04 E-value=1.9e+02 Score=24.63 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=36.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHH----HHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCK----VENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~----~~~~~~~Ga~v~~~~~~ 131 (329)
.+-+|+..+|--|.++|......|.+++++..... ...+ ...+...|.++..+..+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFD 67 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 34588888999999999998888998777653211 1222 23345556676655554
No 278
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=45.85 E-value=45 Score=27.26 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=33.4
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS 128 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 128 (329)
+|...+|+.|..++......|.++++++....+... ..+.+++..
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~ 46 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQG 46 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEES
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----cccccccee
Confidence 566789999999999999999999999976543322 445555443
No 279
>PRK07478 short chain dehydrogenase; Provisional
Probab=45.82 E-value=1e+02 Score=26.66 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=44.0
Q ss_pred CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCC
Q 020236 111 PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISG 186 (329)
Q Consensus 111 ~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~Gt 186 (329)
-..-.+.+...|++|+.+..+.+...+...++.+..+.....+. |............++.++.+.+|++|..+|.
T Consensus 19 G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 19 GRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAG-DVRDEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc-CCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 34556677778999999887665555555444433221111111 1111222334456777777889999999885
No 280
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=45.72 E-value=1.4e+02 Score=25.76 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=42.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|.-|.++|......|.+++++.-.... ......++..+.++..+..| .+...+...++.++
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3456888899999999999988889876665322111 11233445556666655443 34444444444443
No 281
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.72 E-value=1.6e+02 Score=25.05 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=41.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVL 143 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~ 143 (329)
...+|+..+|..|.+++......|.+++++...... ......+...|.+++.+..| .+...+..++..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK 79 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 346888889999999999988889977666543211 12233455567777666544 333344444443
No 282
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.68 E-value=1.7e+02 Score=25.22 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=43.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
.-+|+..+|.-|.++|..-...|.+++++...... ....+.++..+.++..+..| .++..+..+++.++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAA 77 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 35788899999999999988889987776533221 22344455567776665543 34444445555444
No 283
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=45.61 E-value=97 Score=27.88 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=26.7
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
.|+...+|..|.+++..|+.+|.++++ +-...+..+...++.+|++
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 333344677777777778877777433 2222234556666666653
No 284
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=45.55 E-value=1.2e+02 Score=28.22 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=35.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+....-+-.|++|.-.-..-...++.+|++++.++.
T Consensus 92 ~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 92 ANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 347776777777765554433322224666665556667778999999998864
No 285
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=45.48 E-value=2.3e+02 Score=25.49 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=75.5
Q ss_pred HHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcC--------CC-------CH-----HHHHHHHHcCCE
Q 020236 65 NAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPK--------NA-------PK-----CKVENVVRYGGQ 124 (329)
Q Consensus 65 ~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~--------~~-------~~-----~~~~~~~~~Ga~ 124 (329)
..+..+..+.+...|+.+.+.....+++..++..++|++.+... .. +. .-.+.+...|.+
T Consensus 58 ~~~~~l~~~~~v~avig~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 137 (336)
T cd06326 58 ANTRKLIEDDKVFALFGYVGTPTTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLK 137 (336)
T ss_pred HHHHHHHhhcCcEEEEeCCCchhHHHHHHHHHHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCc
Confidence 33444433335566776654444556667778889998875311 00 00 122334445664
Q ss_pred -EEEECCC---HHHHHHHHHHHHHHcCCEeeC--CCCCcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHH
Q 020236 125 -VIWSEAT---MHSRESVASKVLEETGAVLVH--PYNDGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALA 196 (329)
Q Consensus 125 -v~~~~~~---~~~~~~~a~~~~~~~~~~~~~--~~~n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~ 196 (329)
|..+..+ ..++.+..++..++.|.-... .+. .+... +..++.++. .||.||+.. .+....++.+.
T Consensus 138 ~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-----~~~~d-~~~~~~~l~~~~~dav~~~~-~~~~a~~~i~~ 210 (336)
T cd06326 138 RIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYE-----RNTAD-VAAAVAQLAAARPQAVIMVG-AYKAAAAFIRA 210 (336)
T ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeec-----CCccc-HHHHHHHHHhcCCCEEEEEc-CcHHHHHHHHH
Confidence 3333222 223334444444544432221 111 11111 223333332 589888875 34467788999
Q ss_pred HHHhCCCCEEEEEecCCCchH
Q 020236 197 AKSIKPAIRILAAEPIGANDA 217 (329)
Q Consensus 197 ~k~~~~~~~vi~v~~~~~~~~ 217 (329)
+++.+-..+++++.......+
T Consensus 211 ~~~~G~~~~~~~~~~~~~~~~ 231 (336)
T cd06326 211 LRKAGGGAQFYNLSFVGADAL 231 (336)
T ss_pred HHhcCCCCcEEEEeccCHHHH
Confidence 999888888888876655443
No 286
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=45.21 E-value=41 Score=30.84 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=27.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
-|+.-.+|-.|.+.|.++.+.|++++++.-..
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~ 36 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGG 36 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEecC
Confidence 36777999999999999999999977776554
No 287
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=45.11 E-value=1.6e+02 Score=25.05 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=42.4
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+|+..+|.-|.++|......|.+++++.....+ ....+.++..+.++..+..| .++..+..++..++
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAE 73 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678888999999999988899987766533221 22344556667777766554 33434444444433
No 288
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=45.05 E-value=1.2e+02 Score=27.67 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=32.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHS 134 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 134 (329)
..|+..+++..+..++..+-.-| + ++++...-..-...++..|.+++.++ +.++
T Consensus 65 ~~i~~t~G~~~~i~~~~~~l~~g-~--vl~~~p~y~~~~~~~~~~g~~~~~~~-d~~~ 118 (330)
T TIGR01140 65 ASVLPVNGAQEAIYLLPRLLAPG-R--VLVLAPTYSEYARAWRAAGHEVVELP-DLDR 118 (330)
T ss_pred hhEEECCCHHHHHHHHHHHhCCC-e--EEEeCCCcHHHHHHHHHcCCEEEEeC-CHHH
Confidence 45666666666666643332224 3 44444344455677889999999998 4433
No 289
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=45.03 E-value=1.8e+02 Score=24.67 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=24.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPK 108 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~ 108 (329)
..+|+..+|.-|.++|..-...|.++++....
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 34777889999999999877789877666544
No 290
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=44.85 E-value=1.8e+02 Score=27.09 Aligned_cols=54 Identities=11% Similarity=-0.017 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
..|+..+++..+..++..+- ..=.-.|+++.-.-..-...++..|.+++.++.+
T Consensus 89 ~~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 89 DRIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred HHEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 34666666666665544332 1212234445433344566778899999988653
No 291
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.74 E-value=74 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.032 Sum_probs=27.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPK 108 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~ 108 (329)
++.+|+..+|..|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 456788899999999999999999988877654
No 292
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=44.62 E-value=1.6e+02 Score=25.27 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=42.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
-+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+..| .+...+...+..++
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4778889999999999988899876665432111 12334556678777665544 34444444444443
No 293
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=44.42 E-value=1.4e+02 Score=29.52 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=26.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+.|+.+..|-.+.-+..+|+.+|++++.+.+
T Consensus 3 ~kvLIan~Geia~~iiraar~lGi~~V~v~s 33 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACRELGIKTVAVYS 33 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEec
Confidence 4688889999999999999999999777654
No 294
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=44.42 E-value=1.2e+02 Score=27.24 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=27.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
.|+...+|-.|.+++..|+.+|.+++++. .++.+.+.++.+|+..
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~ 202 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTGPDVVLVG---RHSEKLALARRLGVET 202 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCcE
Confidence 34443467777777777777777743332 2245666666677654
No 295
>PRK06172 short chain dehydrogenase; Provisional
Probab=44.26 E-value=1.4e+02 Score=25.63 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=42.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
+.-+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+..| .++..+..++..+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 455888889999999999988889887766533211 22344556677776655443 3333444444433
No 296
>PRK06181 short chain dehydrogenase; Provisional
Probab=44.21 E-value=1.4e+02 Score=25.84 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=42.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
.-+|+..+|.-|.+++......|.+++++...... ....+.+...|.++..+..| .+...+..++..++
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35788888999999999988899987776543211 12233455567776655443 33444444444433
No 297
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=44.11 E-value=1e+02 Score=27.81 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=28.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
..++...+|..|.+++..++.+|.+++++.+. ..+.+.++.+|++
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 213 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGAD 213 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCc
Confidence 34444457778888888888888766555433 3455666667764
No 298
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=43.98 E-value=1.2e+02 Score=29.63 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=25.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
++|+.+..|-.+.-++.+|+.+|++++.+.
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~ 32 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDLHIKSVAIY 32 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 468888999999999999999999987655
No 299
>PRK12414 putative aminotransferase; Provisional
Probab=43.89 E-value=1e+02 Score=28.95 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=30.1
Q ss_pred eEEEECCchHHHHHHHHHH-HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 78 GVVTHSSGNHAAALSLAAK-LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~-~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
.++..++|..+..++..+- .-|= .|+++.-.-..-...++..|++++.++-+
T Consensus 92 ~i~it~g~~~al~~~~~~l~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 144 (384)
T PRK12414 92 EVTVIASASEGLYAAISALVHPGD--EVIYFEPSFDSYAPIVRLQGATPVAIKLS 144 (384)
T ss_pred cEEEECChHHHHHHHHHHhcCCCC--EEEEeCCCccchHHHHHHcCCEEEEEecC
Confidence 4777777777766555432 2232 34444432233455567789999888643
No 300
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=43.88 E-value=1.9e+02 Score=24.84 Aligned_cols=127 Identities=16% Similarity=0.095 Sum_probs=67.5
Q ss_pred ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCccccc
Q 020236 82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIIS 161 (329)
Q Consensus 82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~ 161 (329)
.++-|.-.++....+.+. ++.+=.-.-.+....+.....||+.+..|+...+..+ .+++.+..++..
T Consensus 41 ~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~----~~~~~~i~~iPG-------- 107 (204)
T TIGR01182 41 LRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAK----HAQDHGIPIIPG-------- 107 (204)
T ss_pred CCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHH----HHHHcCCcEECC--------
Confidence 355555555666665554 3333333334566666677777777766664333332 233334444432
Q ss_pred ccCcchHHHHhhCC-CCCE-EEEeCCCC-hHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCC
Q 020236 162 GQGTISLEFLEQVP-LLDT-IIVPISGG-GLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGR 225 (329)
Q Consensus 162 g~~t~~~Ei~~ql~-~~d~-vv~~~GtG-g~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~ 225 (329)
..+-.|+.+.+. ..|. =+-|.+.. |. ...+.++.-.|+++++.+-=-....+..+++.|-
T Consensus 108 --~~TptEi~~A~~~Ga~~vKlFPA~~~GG~--~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa 170 (204)
T TIGR01182 108 --VATPSEIMLALELGITALKLFPAEVSGGV--KMLKALAGPFPQVRFCPTGGINLANVRDYLAAPN 170 (204)
T ss_pred --CCCHHHHHHHHHCCCCEEEECCchhcCCH--HHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCC
Confidence 244468776665 3443 34565532 22 2345566656888888653333344666677664
No 301
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.87 E-value=96 Score=26.37 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=38.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH--HHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK--CKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~~ 131 (329)
+.+|+..+|..|.+++......|.+++++....... ...+.++..+.++..+..+
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 468888999999999999888999887766554321 2233445567677666554
No 302
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=43.78 E-value=96 Score=29.04 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=40.6
Q ss_pred eEEEECCchHHHHHHHHHH-HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHH-----HHHHHHHHHHHHcCCEee
Q 020236 78 GVVTHSSGNHAAALSLAAK-LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMH-----SRESVASKVLEETGAVLV 151 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~-~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~~~~~ 151 (329)
.|+..+++..+..++..+- .-| + .|+++.-.-..-...++..|++++.++-+.+ +..+..+....+...+++
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~g-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l 171 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPG-D-FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVL 171 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCC-C-EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEE
Confidence 4666666677766554432 123 2 3344443333345667789999998865321 111222222223456777
Q ss_pred CCCCCcc
Q 020236 152 HPYNDGR 158 (329)
Q Consensus 152 ~~~~n~~ 158 (329)
+..+||-
T Consensus 172 ~~p~NPT 178 (388)
T PRK07366 172 SYPHNPT 178 (388)
T ss_pred eCCCCCC
Confidence 6555654
No 303
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=43.71 E-value=1e+02 Score=28.85 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=30.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
+.++..++|..|..++..+...+-.-.|++|...-......++..|++++.++-
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 456666666666555443322222235666665555556666777777777654
No 304
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=43.67 E-value=1.1e+02 Score=28.50 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhcccc-CCCCCccc-hhhhhhcCCeEEEEec--CCCCCCccchhhHHHHHhcCc-hhc---cCCeEEEE
Q 020236 11 NFSSIKEAQKRISLYI-HKTPVLSS-ETLNSMSGRSLFFKCE--CFQKGGAFKFRGASNAVLSLD-EDQ---AIKGVVTH 82 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~i-~~TPl~~~-~~l~~~~g~~i~~K~E--~~nptGS~KdR~a~~~l~~a~-~~~---~~~~vv~~ 82 (329)
+++|....+.+..+.| -.||-... ..+.+...+.|.==.. ..+||-+.=|-.. +.... ..+ ...+|+..
T Consensus 89 sl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~T---i~e~~~~~g~~l~g~kia~v 165 (338)
T PRK08192 89 SLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFT---IQKELAHAGRGIDGMHIAMV 165 (338)
T ss_pred CHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHH---HHHHhhccCCCcCCCEEEEE
Confidence 3445555555555543 35555443 3344444555543222 2456643333322 22110 001 12345544
Q ss_pred CC---chHHHHHHHH-HHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEECC
Q 020236 83 SS---GNHAAALSLA-AKLRGIPAYIVIPKN--APKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 83 ss---GN~g~a~A~~-a~~~G~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.. +|.+.+++.+ ++.+|+.++++.|++ .++.-.+.++..|.++..++.
T Consensus 166 GD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 166 GDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred CcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 44 6889998876 667799999999987 345555666777888776643
No 305
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.65 E-value=1.5e+02 Score=25.26 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=42.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
..-+|+..+|.-|.++|......|.+++++..... .....+.++..|+++..+..| .+...+..++..+
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 34577788899999999998888987666543321 122334456668877655443 3333444444433
No 306
>PRK07683 aminotransferase A; Validated
Probab=43.60 E-value=89 Score=29.33 Aligned_cols=53 Identities=6% Similarity=0.103 Sum_probs=32.7
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
.|+..+++..+..++..+- .+-.-.|++|...-..-...++..|++++.++.+
T Consensus 91 ~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 143 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTI-LEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR 143 (387)
T ss_pred cEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCccchHHHHHHcCCEEEEeecC
Confidence 5676666677666554432 2222456666654444456677889999988653
No 307
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=43.55 E-value=93 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=26.4
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
++...++ .|.+++..++..|.+++++.+. +.+.+.++.+|++
T Consensus 139 li~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 180 (271)
T cd05188 139 LVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGAD 180 (271)
T ss_pred EEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCc
Confidence 4444444 8888888888888666555432 3455556666654
No 308
>PRK07035 short chain dehydrogenase; Provisional
Probab=43.54 E-value=1.7e+02 Score=25.18 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=42.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.+++......|.+++++...... +...+.+...|.++..+..+ .++..+..++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888899999999999988899987766542211 12233444556665544433 34444444554443
No 309
>PRK07074 short chain dehydrogenase; Provisional
Probab=43.45 E-value=1.8e+02 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=24.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
..+|+..+|.-|.+++......|.+++++.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEe
Confidence 457888889999999999888898877665
No 310
>PRK06290 aspartate aminotransferase; Provisional
Probab=43.41 E-value=1.1e+02 Score=29.26 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=32.1
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+..++..+- .+-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 108 ~I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred eEEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 4776666677766555432 222234555554444456678889999998864
No 311
>PRK06949 short chain dehydrogenase; Provisional
Probab=43.34 E-value=1.3e+02 Score=25.91 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=40.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
...+|+..+|.-|.+++......|.+++++...... +.....++..+.++..+..| .++..+..+++.+
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 456788889999999999988899986666443211 11122334445555444333 3444444444443
No 312
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=43.20 E-value=2.2e+02 Score=24.65 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEEec
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKP--AIRILAAEP 211 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~--~~~vi~v~~ 211 (329)
+++++-+++|+|++. +.....|+..++++.+. ++.|+|.+.
T Consensus 175 ~~l~~~~~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~d~ 217 (275)
T cd06320 175 TILQRNPDLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGTDG 217 (275)
T ss_pred HHHHhCCCccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEecCC
Confidence 344443467877665 45556688888888763 567776653
No 313
>PRK08462 biotin carboxylase; Validated
Probab=43.18 E-value=1.4e+02 Score=28.67 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=25.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
+.|..+..|-.+.-+..+|+.+|+.++++.
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~~~v~~~ 34 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGKEAIAIY 34 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEe
Confidence 568888888888888999999998888774
No 314
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=43.17 E-value=1.1e+02 Score=26.07 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=37.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH-HHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 131 (329)
+-+|+..+|..|..++......|.+++++....... .....++..|.++..+..|
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFD 62 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEcc
Confidence 467888899999999999888899865555432221 2234455678787765554
No 315
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.88 E-value=1e+02 Score=29.72 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=53.9
Q ss_pred hhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHH----HHHcCCEEEEECCCHHHH
Q 020236 60 FRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVEN----VVRYGGQVIWSEATMHSR 135 (329)
Q Consensus 60 dR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~----~~~~Ga~v~~~~~~~~~~ 135 (329)
.+.....+..+ + +....+..+||-.+..++..+- ++-.-.|++|...-...... +..+|+++.+++...+ .
T Consensus 63 v~~lE~~la~l--e-g~~~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d-~ 137 (432)
T PRK06702 63 LAAFEQKLAEL--E-GGVGAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLT-A 137 (432)
T ss_pred HHHHHHHHHHH--h-CCCcEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCC-H
Confidence 44455555433 2 3344677889999888887654 33334566676644433333 6889999999976321 1
Q ss_pred HHHHHHHHHHcCCEeeCCCCCcc
Q 020236 136 ESVASKVLEETGAVLVHPYNDGR 158 (329)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~n~~ 158 (329)
.+..+.+..+....|++...||.
T Consensus 138 ~~l~~~I~~~Tk~I~~e~pgnP~ 160 (432)
T PRK06702 138 DEIVALANDKTKLVYAESLGNPA 160 (432)
T ss_pred HHHHHhCCcCCeEEEEEcCCCcc
Confidence 11122222334567776666765
No 316
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=42.88 E-value=2.2e+02 Score=24.50 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHhhC-CCCCEEEEeCCCChHHHHHHHHHHHhCC----CCEEEEEec
Q 020236 168 LEFLEQV-PLLDTIIVPISGGGLISGVALAAKSIKP----AIRILAAEP 211 (329)
Q Consensus 168 ~Ei~~ql-~~~d~vv~~~GtGg~~~Gi~~~~k~~~~----~~~vi~v~~ 211 (329)
.+++++. +.||+|++. +.....|+..++++.+. ++.|++.+.
T Consensus 169 ~~~l~~~~~~~~ai~~~--~d~~A~g~~~al~~~g~~ip~dv~v~g~d~ 215 (264)
T cd06274 169 AELLARLGRLPRALFTT--SYTLLEGVLRFLRERPGLAPSDLRIATFDD 215 (264)
T ss_pred HHHHccCCCCCcEEEEc--ChHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 3445444 458888876 45667788999988762 477777764
No 317
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.79 E-value=2.2e+02 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=25.5
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHhC----CCCEEEEEec
Q 020236 176 LLDTIIVPISGGGLISGVALAAKSIK----PAIRILAAEP 211 (329)
Q Consensus 176 ~~d~vv~~~GtGg~~~Gi~~~~k~~~----~~~~vi~v~~ 211 (329)
.|++||+. +.....|+..++++.+ .++.++|.+.
T Consensus 172 ~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 209 (263)
T cd06280 172 RPEALVAS--NGLLLLGALRAVRAAGLRIPQDLALAGFDN 209 (263)
T ss_pred CCcEEEEC--CcHHHHHHHHHHHHcCCCCCCcEEEEEeCC
Confidence 58888874 5666778999998876 3567887764
No 318
>PRK05717 oxidoreductase; Validated
Probab=42.79 E-value=1.9e+02 Score=24.95 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=41.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|..-...|.+++++-... .......+..+.+++.+..| .++..+..+++.++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568888999999999999888898776653221 11222334456566555543 33444444555444
No 319
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=42.72 E-value=98 Score=28.31 Aligned_cols=46 Identities=28% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHH-HHHcCCEEEEE
Q 020236 83 SSGNHAAALSLAAKLRGIPAYIVIPKNA--PKCKVEN-VVRYGGQVIWS 128 (329)
Q Consensus 83 ssGN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~~-~~~~Ga~v~~~ 128 (329)
-.+|...+++.+++++|++++++.|+.. +...++. .+..|.++...
T Consensus 160 d~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~ 208 (304)
T PRK00779 160 DGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVT 208 (304)
T ss_pred CCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEE
Confidence 3478888888888888888888888762 2222222 45577777655
No 320
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.69 E-value=2.2e+02 Score=24.43 Aligned_cols=132 Identities=16% Similarity=0.140 Sum_probs=83.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHH-cCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVR-YGGQVIWSEATMHSRESVASKVLEETGAVLVHPY 154 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~-~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (329)
-.|+-..+-..+..++.+....|++++=+.-.+. ....++.++. ++ ++..--++.-+. +.+++..+..-.|.+.|.
T Consensus 11 iaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~-~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 11 VPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNP-EQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHHcCCCEEECCC
Confidence 3466678889999999999999999986664442 2233555543 44 544333332221 123334443445777775
Q ss_pred CCcccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHc
Q 020236 155 NDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAA 223 (329)
Q Consensus 155 ~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~ 223 (329)
-|+ |+.+.+.+.+..++| +..|.+=+..++..-..-+|++-....+.+.+..+++.
T Consensus 89 ~~~-----------~v~~~~~~~~i~~iP--G~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~ 144 (204)
T TIGR01182 89 LTP-----------ELAKHAQDHGIPIIP--GVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAG 144 (204)
T ss_pred CCH-----------HHHHHHHHcCCcEEC--CCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhc
Confidence 544 777766666777888 45677777777776667788887776665666666654
No 321
>PRK08862 short chain dehydrogenase; Provisional
Probab=42.67 E-value=1.3e+02 Score=25.82 Aligned_cols=84 Identities=8% Similarity=0.043 Sum_probs=47.7
Q ss_pred EEEEEcCC--CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCC
Q 020236 102 AYIVIPKN--APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLD 178 (329)
Q Consensus 102 ~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d 178 (329)
++++.-.. .-..-.+.+...|++|+.+..+.+...+..+++.+.......-+.+ ....+....+..++.++++ .+|
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~~iD 85 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLK-DFSQESIRHLFDAIEQQFNRAPD 85 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEcc-CCCHHHHHHHHHHHHHHhCCCCC
Confidence 44444322 3345566677789999999877655554444443322211111111 1122333445567788888 899
Q ss_pred EEEEeCCC
Q 020236 179 TIIVPISG 186 (329)
Q Consensus 179 ~vv~~~Gt 186 (329)
.+|...|.
T Consensus 86 ~li~nag~ 93 (227)
T PRK08862 86 VLVNNWTS 93 (227)
T ss_pred EEEECCcc
Confidence 99999864
No 322
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=42.57 E-value=40 Score=31.09 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=36.4
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
.|+..++...+..++..+-..+-...|++|.-....-.+.++..|.+++.++
T Consensus 70 ~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~ 121 (363)
T PF00155_consen 70 NILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVP 121 (363)
T ss_dssp GEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEE
T ss_pred EEEEecccccchhhhhhcccccccccceecCCccccccccccccCceeeecc
Confidence 5777666666666666655433345566676666667888899999999887
No 323
>PLN02827 Alcohol dehydrogenase-like
Probab=42.39 E-value=2.6e+02 Score=26.13 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=31.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+.|+....|--|.+++..|+.+|.+.++.+.. ++.+.+..+.+|++-+
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 44544456888888888888888765544432 4567777777888643
No 324
>PRK05764 aspartate aminotransferase; Provisional
Probab=42.36 E-value=99 Score=28.94 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=31.4
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
.++..+++..+..++..+- ..-.-.|++|+..-..-....+.+|++++.++.+
T Consensus 93 ~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 145 (393)
T PRK05764 93 QVIVTTGAKQALYNAFMAL-LDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTG 145 (393)
T ss_pred HEEEeCCcHHHHHHHHHHh-cCCCCEEEecCCCCcchHHHHHHcCCEEEEEecC
Confidence 4666666666665554432 2222345555544444456678889999988754
No 325
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=42.32 E-value=1.1e+02 Score=30.40 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=40.9
Q ss_pred CeEEEECC---chHHHHHHHHHHHcC-CCEEEEEcCCC--CHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSS---GNHAAALSLAAKLRG-IPAYIVIPKNA--PKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ss---GN~g~a~A~~a~~~G-~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.+|+.... +|.+.|++.+++.+| ++++++.|+.. ++..++.++..|+.+...+.
T Consensus 175 lkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 175 IHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 34555544 799999999999998 99999999874 44555667778988876643
No 326
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=42.32 E-value=2.2e+02 Score=24.76 Aligned_cols=105 Identities=17% Similarity=0.067 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCCEEEEEecCC---CchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCCcEEEeCHHHHHHH
Q 020236 193 VALAAKSIKPAIRILAAEPIG---ANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEA 269 (329)
Q Consensus 193 i~~~~k~~~~~~~vi~v~~~~---~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 269 (329)
++..+...+-+++|.|-.... +.....+.+.|++. .+.-+.-+.+.+..-..-+...+...
T Consensus 40 la~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~----------------~pgrln~l~h~vyk~a~~~wrraR~~ 103 (219)
T PF11775_consen 40 LARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPR----------------YPGRLNDLRHIVYKDADTPWRRARRN 103 (219)
T ss_pred HHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCC----------------CChHHHHHHHHHHHhcCChhhhHHHh
Confidence 455666667778999987662 33333334445431 01111111111111112222233333
Q ss_pred HHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCC
Q 020236 270 MKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNV 318 (329)
Q Consensus 270 ~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~ 318 (329)
+..+. +++++-+---|-|+.-+.+. +..+ .+.++|++|+|+|.-
T Consensus 104 l~~m~-~~~~~~eniDGeAl~~a~~r-L~~r---~e~rkiLiViSDG~P 147 (219)
T PF11775_consen 104 LGLMM-REGLLKENIDGEALRWAAER-LLAR---PEQRKILIVISDGAP 147 (219)
T ss_pred HHHHh-hccccccCCcHHHHHHHHHH-HHcC---CccceEEEEEeCCCc
Confidence 44343 35666666655555543332 1332 256899999998853
No 327
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=42.27 E-value=1.6e+02 Score=26.25 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=25.3
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
+|...+|..|.+++..|+.+|.+++++.. +..+.+.++.+|++
T Consensus 144 lI~g~~g~ig~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~ 186 (324)
T cd08292 144 IQNAAGGAVGKLVAMLAAARGINVINLVR---RDAGVAELRALGIG 186 (324)
T ss_pred EEcccccHHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHhcCCC
Confidence 33345577777777777777776555543 23344455555654
No 328
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.14 E-value=1.6e+02 Score=28.15 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=44.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|.-|.++|......|.+++++-.....+...+.....+.+.+.++-. .+...+......++
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 34577788899999999998889998777654333333333445567777777653 44444444444443
No 329
>PRK07777 aminotransferase; Validated
Probab=42.13 E-value=1.1e+02 Score=28.61 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=29.9
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..++|..+..++..+-.-.-+ .|+++...-..-...++..|++++.++-
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~~gd-~vli~~p~y~~~~~~~~~~g~~~~~~~~ 138 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVEPGD-EVLLIEPYYDSYAAVIAMAGAHRVPVPL 138 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCCC-EEEEeCCCchhhHHHHHHCCCEEEEeec
Confidence 477777777777666554321112 3343433333345667788999887753
No 330
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=42.02 E-value=77 Score=29.58 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=13.5
Q ss_pred ccccCcchHHHHhhCCCCCEEEEeCCCChH
Q 020236 160 ISGQGTISLEFLEQVPLLDTIIVPISGGGL 189 (329)
Q Consensus 160 ~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~ 189 (329)
..+.-+-+.|+.+. +.+|. |+++|+|+.
T Consensus 112 tv~s~~~alefak~-~~fDs-~vaiGGGSa 139 (465)
T KOG3857|consen 112 TVGSVTAALEFAKK-KNFDS-FVAIGGGSA 139 (465)
T ss_pred chhhHHHHHHHHHh-cccce-EEEEcCcch
Confidence 34444455555532 34553 455665543
No 331
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=41.99 E-value=48 Score=33.73 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=39.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC---------C---------HHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA---------P---------KCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~~ 127 (329)
.+.|++-.+|-.|.+.|+..+++|.++++|-.... + ....+.++.+|.+++.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 379 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHL 379 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEc
Confidence 46688889999999999999999999888854321 1 1245677888888763
No 332
>PRK08265 short chain dehydrogenase; Provisional
Probab=41.87 E-value=2.1e+02 Score=24.89 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=40.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|--|.++|......|.+++++-.. . ....+..+..+.++..+..| .++..+..++..++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~-~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDID-A-DNGAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-H-HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 456788888999999999988899977665332 1 11222333446666555443 34444444554444
No 333
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=41.86 E-value=1.9e+02 Score=25.09 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=41.5
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH-HcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV-RYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|.-|.++|......|.+++++- .+ ..+.+.+. ..|.++..+..| .+...+..++..++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~-r~--~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLD-KS--AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEe-CC--HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 34568888889999999999888999877653 22 23333333 345556555443 33444445554444
No 334
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.84 E-value=1.3e+02 Score=27.89 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=37.4
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.+.....|-.|.-.-.+|+.+|++++++-.. +..|.+.++.+||+......
T Consensus 184 ~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 184 WVGIVGLGGLGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred EEEEecCcccchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3444444448877778899999999988543 24678899999999887755
No 335
>PRK10537 voltage-gated potassium channel; Provisional
Probab=41.79 E-value=3.2e+02 Score=26.06 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=61.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
+.+++.+..|+.|..++..-+..|.+++++.++. .+.....|.+++.- |+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-----~~~~~~~g~~vI~G-----------------------D~-- 289 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-----LEHRLPDDADLIPG-----------------------DS-- 289 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECch-----hhhhccCCCcEEEe-----------------------CC--
Confidence 4679999999999999888777889988887641 11111112222111 11
Q ss_pred CcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEec
Q 020236 156 DGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEP 211 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~ 211 (329)
+ =.|.+++.+ +.+.+++....-..-.-+....|+.+|+.++++...
T Consensus 290 ---------t-d~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 290 ---------S-DSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred ---------C-CHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 1 135666655 577888877765444446667888899999888653
No 336
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=41.62 E-value=1.5e+02 Score=27.56 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=36.1
Q ss_pred CeEEEECCc--hHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHH----HHHHcCCEEEEEC
Q 020236 77 KGVVTHSSG--NHAAALSLAAKLRGIPAYIVIPKNA--PKCKVE----NVVRYGGQVIWSE 129 (329)
Q Consensus 77 ~~vv~~ssG--N~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~----~~~~~Ga~v~~~~ 129 (329)
.+|+....+ |.+.+++.+++.+|++++++.|+.. ++..++ ..+..|.++...+
T Consensus 156 ~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 156 LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 344444443 8999999999999999999999873 333332 2345688876654
No 337
>PRK06483 dihydromonapterin reductase; Provisional
Probab=41.54 E-value=2.2e+02 Score=24.16 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=43.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~ 145 (329)
..+|+..+|--|.++|......|.+++++-... ....+.++..|+..+.++- +.++..+..++..+.
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQH 71 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 457888899999999999888899887765332 2234555667777666664 344444445554443
No 338
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.39 E-value=1.6e+02 Score=26.52 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=39.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA--PKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+..+|+..+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..|
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 45688888999999999998888988766543221 123345567778888777654
No 339
>PRK10490 sensor protein KdpD; Provisional
Probab=41.37 E-value=4.1e+02 Score=28.34 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=59.5
Q ss_pred EEEECCchHH----HHHHHHHHHcCCCEEEEE---cC--CCCH-------HHHHHHHHcCCEEEEECCCHHHHHHHHHHH
Q 020236 79 VVTHSSGNHA----AALSLAAKLRGIPAYIVI---PK--NAPK-------CKVENVVRYGGQVIWSEATMHSRESVASKV 142 (329)
Q Consensus 79 vv~~ssGN~g----~a~A~~a~~~G~~~~i~~---p~--~~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~ 142 (329)
+|+-|++-++ +..+..|.+++-+.+++. |. ..+. ..+++.+.+||+++.+.++ +..+...++
T Consensus 254 LV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~--dva~~i~~~ 331 (895)
T PRK10490 254 LLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP--AEEKAVLRY 331 (895)
T ss_pred EEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC--CHHHHHHHH
Confidence 4444444444 344556777888877544 21 1222 1234567799998888763 233445566
Q ss_pred HHHcCC--EeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCC
Q 020236 143 LEETGA--VLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPIS 185 (329)
Q Consensus 143 ~~~~~~--~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~G 185 (329)
+++.+. ..+.+..... +...+++...+....+.+|..++|..
T Consensus 332 A~~~~vt~IViG~s~~~~-~~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 332 AREHNLGKIIIGRRASRR-WWRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred HHHhCCCEEEECCCCCCC-CccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 776554 3333322211 13345788889988888888777643
No 340
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=41.23 E-value=1e+02 Score=28.52 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=33.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+ +. +-.+++|.-.-..-...++..|++++.++-
T Consensus 72 ~~i~it~Ga~~~l~~~~~~--~~-~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~ 122 (354)
T PRK06358 72 ENVILGNGATELIFNIVKV--TK-PKKVLILAPTFAEYERALKAFDAEIEYAEL 122 (354)
T ss_pred hhEEECCCHHHHHHHHHHH--hC-CCcEEEecCChHHHHHHHHHcCCeeEEEeC
Confidence 4577767777777666554 22 235566665555556677889999988864
No 341
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=41.22 E-value=1.9e+02 Score=24.74 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
+.-+|+..+|--|.++|......|..+++....... +.....++..|.++..+..| .+...+..++..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456888889999999999888889887765433211 12234556677788766654 3333444444443
No 342
>PRK06198 short chain dehydrogenase; Provisional
Probab=41.03 E-value=2.4e+02 Score=24.34 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH--HHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK--CKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|.-|..++......|.+.++++...... .....++..|.++..+..| .+...+......++
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3457778889999999999888999844445443221 2233556678887655443 33344444444333
No 343
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=41.01 E-value=1.4e+02 Score=24.68 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
.+.+++..-|+-|+++|...+.+|.+++|+- ..+.+.-+-...|-++.. .++ .+++.+ +++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e---~DPi~alqA~~dGf~v~~----~~~-------a~~~ad-i~v---- 83 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTE---IDPIRALQAAMDGFEVMT----LEE-------ALRDAD-IFV---- 83 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-----HHH-------HTTT-S-EEE----
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEE---CChHHHHHhhhcCcEecC----HHH-------HHhhCC-EEE----
Confidence 5678999999999999999999998776653 234444444455666542 111 111111 111
Q ss_pred CcccccccCc-chHHHHhhCCCCCEEEEeCCCC
Q 020236 156 DGRIISGQGT-ISLEFLEQVPLLDTIIVPISGG 187 (329)
Q Consensus 156 n~~~~~g~~t-~~~Ei~~ql~~~d~vv~~~GtG 187 (329)
...|... +-.|.++|++ .+.|++.+|+.
T Consensus 84 ---taTG~~~vi~~e~~~~mk-dgail~n~Gh~ 112 (162)
T PF00670_consen 84 ---TATGNKDVITGEHFRQMK-DGAILANAGHF 112 (162)
T ss_dssp ---E-SSSSSSB-HHHHHHS--TTEEEEESSSS
T ss_pred ---ECCCCccccCHHHHHHhc-CCeEEeccCcC
Confidence 2234333 4567777775 35677777664
No 344
>PLN02342 ornithine carbamoyltransferase
Probab=40.72 E-value=1e+02 Score=28.79 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=31.7
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHHcCC-EEEEE
Q 020236 84 SGNHAAALSLAAKLRGIPAYIVIPKNA--PKCKVENVVRYGG-QVIWS 128 (329)
Q Consensus 84 sGN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~~~~~~Ga-~v~~~ 128 (329)
..|...+++.+++++|+.++++.|+.. +...++..+..|. ++...
T Consensus 203 ~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 203 GNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT 250 (348)
T ss_pred CchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE
Confidence 357889999999999999999988873 3344555555664 55544
No 345
>PRK05370 argininosuccinate synthase; Validated
Probab=40.70 E-value=3.5e+02 Score=26.25 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=69.6
Q ss_pred cCCeEEEECCc-hHHHHHHHHHHHcCCCEEEEEcC-CCC-----HHHHHHHHHcCC-EEEEECCCHHHHHHHHHHHHHHc
Q 020236 75 AIKGVVTHSSG-NHAAALSLAAKLRGIPAYIVIPK-NAP-----KCKVENVVRYGG-QVIWSEATMHSRESVASKVLEET 146 (329)
Q Consensus 75 ~~~~vv~~ssG-N~g~a~A~~a~~~G~~~~i~~p~-~~~-----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~a~~~~~~~ 146 (329)
+.+.++..|.| ++...+-|.-.. |+.++.|.-+ +.+ ..-.+....+|| +++.++....=+.+.+ ...+ -
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i-~aI~-a 87 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI-AAIQ-C 87 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHH-HHHH-c
Confidence 34445556666 455555666555 9998887732 221 244556778999 5888776321112222 2222 2
Q ss_pred CCEee----CCCCCcccccccCcchHHHHhhCC--CCCEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236 147 GAVLV----HPYNDGRIISGQGTISLEFLEQVP--LLDTIIVP-ISGGGLISGVALAAKSIKPAIRILAA 209 (329)
Q Consensus 147 ~~~~~----~~~~n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~-~GtGg~~~Gi~~~~k~~~~~~~vi~v 209 (329)
+..|. +.|... ...+.--++..+++-.. ..|+|.-. +|-|--..=.-.+++.+.|+.+|++-
T Consensus 88 nA~Y~~~~e~~Y~l~-t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaP 156 (447)
T PRK05370 88 GAFHISTGGVTYFNT-TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKP 156 (447)
T ss_pred CCccccccCccccCC-CcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecc
Confidence 33331 111100 11222334444443322 45666554 45677777777788888899888874
No 346
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=40.69 E-value=2.4e+02 Score=27.57 Aligned_cols=85 Identities=24% Similarity=0.231 Sum_probs=52.7
Q ss_pred cchhhHHHHHhcCchhccCCeEEEEC-CchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC---CHH
Q 020236 58 FKFRGASNAVLSLDEDQAIKGVVTHS-SGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA---TMH 133 (329)
Q Consensus 58 ~KdR~a~~~l~~a~~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~---~~~ 133 (329)
..+..+...+.-+ ...+.+.||+.| ||++++.+|.+ +-..|.+++.|.. ...+++--.+|..-+.++. +.+
T Consensus 357 ~~~~ia~~a~~~a-~~~~akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~--~v~R~L~L~wGV~Pil~~~~~~~~~ 431 (473)
T TIGR01064 357 ITEAIALSAVEAA-EKLDAKAIVVLTESGRTARLLSKY--RPNAPIIAVTPNE--RVARQLALYWGVFPFLVDEEPSDTE 431 (473)
T ss_pred hHHHHHHHHHHHH-hhcCCCEEEEEcCChHHHHHHHhh--CCCCCEEEEcCCH--HHHHHhhccCCcEEEEeCCCCCCHH
Confidence 3445555555433 344566677765 79999888876 5568888888754 2233334457888776654 345
Q ss_pred HHHHHHHHHHHHcC
Q 020236 134 SRESVASKVLEETG 147 (329)
Q Consensus 134 ~~~~~a~~~~~~~~ 147 (329)
+..+.+.+++++.|
T Consensus 432 ~~i~~a~~~l~~~g 445 (473)
T TIGR01064 432 ARVNKALELLKEKG 445 (473)
T ss_pred HHHHHHHHHHHHcC
Confidence 55666666666544
No 347
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=40.64 E-value=3e+02 Score=25.52 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
.++|..-..||.|.++|...+..|++++++.+..... .+..+..|.+
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s--~~~A~~~G~~ 63 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKS--WKKAEADGFE 63 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhh--HHHHHHCCCe
Confidence 3567777899999999999999999888877654222 2234456764
No 348
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=40.56 E-value=2.1e+02 Score=25.04 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc---CCEEEEECCCHHHHHHHHHHHHHHcC--CEeeCCCCCcccccc
Q 020236 88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRY---GGQVIWSEATMHSRESVASKVLEETG--AVLVHPYNDGRIISG 162 (329)
Q Consensus 88 g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~n~~~~~g 162 (329)
|.+.|.+.+.+|+++.++-++..+...+..+..+ |.+|...-+.... ....+.+.. .| ...+.-|.+... .
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r-~~l~~~L~~-~G~~v~~~~~Y~~~~~--~ 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGR-EVLEEKLEE-RGAEVREVEVYRTEPP--P 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCch-HHHHHHHHh-CCCEEEEEeeeeecCC--C
Confidence 4566777888888887765556666777777666 5677665443211 112233333 33 233334433111 1
Q ss_pred cCcchHHH--HhhCCCCCEEEEeCCCChHHHHHHHHHHHhCC----CCEEEEEe
Q 020236 163 QGTISLEF--LEQVPLLDTIIVPISGGGLISGVALAAKSIKP----AIRILAAE 210 (329)
Q Consensus 163 ~~t~~~Ei--~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~----~~~vi~v~ 210 (329)
+. ..++ ..+...+|.|+..+ +.++-.+...+...++ ..+++.+-
T Consensus 162 ~~--~~~~~~~~~~~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG 211 (248)
T COG1587 162 LD--EATLIELLKLGEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIG 211 (248)
T ss_pred cc--HHHHHHHHHhCCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEec
Confidence 11 1111 23334789988875 4555556655555443 24455543
No 349
>PRK12828 short chain dehydrogenase; Provisional
Probab=40.38 E-value=1.6e+02 Score=24.77 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=44.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~ 145 (329)
+.-+|+.++|--|.+++......|.+++++.....+ ......+...+.+++.++- +.++..+..++..++
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 456888899999999999888889987666643221 2233445566777776654 344444444444433
No 350
>PRK05867 short chain dehydrogenase; Provisional
Probab=40.36 E-value=1.3e+02 Score=26.10 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=47.1
Q ss_pred CEEEEEcCC--CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCC
Q 020236 101 PAYIVIPKN--APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLD 178 (329)
Q Consensus 101 ~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d 178 (329)
+.+++.-.. .-..-.+.+...|++|+.+..+.+...+...++....+.....+.| ............++.+.++.+|
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id 88 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCD-VSQHQQVTSMLDQVTAELGGID 88 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEcc-CCCHHHHHHHHHHHHHHhCCCC
Confidence 345555432 3345566777789999998877655554444443322221111111 1111222334445666677899
Q ss_pred EEEEeCCCC
Q 020236 179 TIIVPISGG 187 (329)
Q Consensus 179 ~vv~~~GtG 187 (329)
.+|...|..
T Consensus 89 ~lv~~ag~~ 97 (253)
T PRK05867 89 IAVCNAGII 97 (253)
T ss_pred EEEECCCCC
Confidence 999888753
No 351
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=40.26 E-value=1.2e+02 Score=29.37 Aligned_cols=48 Identities=23% Similarity=0.042 Sum_probs=36.1
Q ss_pred hhhHHHHHhcCchhc----cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 60 FRGASNAVLSLDEDQ----AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 60 dR~a~~~l~~a~~~~----~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
-+++.+.+..+.+.. ..++|++..+||-|..+|.....+|-+++.+..
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 366666666554432 346899999999999999999999988885553
No 352
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=40.07 E-value=1.5e+02 Score=26.59 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=28.9
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
.++...+|..|.+++..|+.+|.+++++.+ ++.+.+.++.+|++-+
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~ 213 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEV 213 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEE
Confidence 333345677888888888888877544432 3455666676776433
No 353
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.04 E-value=2.4e+02 Score=25.63 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=33.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
..++...+|..|.+++..|+.+|.+.++.+... +.+.+.++.+|++
T Consensus 170 ~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 170 STVVVVGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 344445689999999999999999866655433 4567777888884
No 354
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=39.97 E-value=3.7e+02 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=28.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK 112 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~ 112 (329)
..+.++.++.+....+++.+...+|+.+..+.-...++
T Consensus 323 ~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~ 360 (475)
T PRK14478 323 EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTD 360 (475)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCH
Confidence 35667777888899999999999999988665443333
No 355
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.88 E-value=1.5e+02 Score=27.04 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=29.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
+.|+...+|..|.+++..|+.+|...++.+... +.+....+.+|++
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~ 213 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGAT 213 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCc
Confidence 344444567888888888888888654444332 4556666777764
No 356
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=39.83 E-value=1.7e+02 Score=27.10 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=32.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+.|+...+|..|.+++..|+.+|.+.++.+.. ++.|...++.+|++.+
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 44444466888888888899999875554433 3566777777887543
No 357
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=39.73 E-value=2.4e+02 Score=25.48 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=30.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
.++++.-..|+.|.++|..++.+|.+++++-.. ..+......+|.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 466777788999999999988888865554332 2233334445544
No 358
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=39.59 E-value=1.4e+02 Score=27.70 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=32.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
..|+...+|..|.+++..|+.+|...++.+.. ++.+.+.++.+|++
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34444467889999888899999875555432 46677777888874
No 359
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=39.56 E-value=3.8e+02 Score=26.77 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=43.8
Q ss_pred ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHH
Q 020236 82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRE 136 (329)
Q Consensus 82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~ 136 (329)
+...-+-..++.+|-..|....-+=|.....+...+++.-.+++++++.+..+..
T Consensus 79 ~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i 133 (537)
T KOG1176|consen 79 APNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKI 133 (537)
T ss_pred cCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHH
Confidence 3445555777888999999888888888888899999999999999998654433
No 360
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=39.50 E-value=44 Score=28.85 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhC-CCCCEEEEeCCCC
Q 020236 116 ENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV-PLLDTIIVPISGG 187 (329)
Q Consensus 116 ~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql-~~~d~vv~~~GtG 187 (329)
+.+...|++|+.++.+.....+..+++.++.+.-. -.-|.........+..++.++. +++|.+|...|..
T Consensus 14 ~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~--~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~ 84 (241)
T PF13561_consen 14 RALAEEGANVILTDRNEEKLADALEELAKEYGAEV--IQCDLSDEESVEALFDEAVERFGGRIDILVNNAGIS 84 (241)
T ss_dssp HHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEE--EESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESC
T ss_pred HHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCce--EeecCcchHHHHHHHHHHHhhcCCCeEEEEeccccc
No 361
>PRK05693 short chain dehydrogenase; Provisional
Probab=39.45 E-value=2.6e+02 Score=24.42 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=43.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~ 145 (329)
..+|+..+|--|.+++......|.+++++... ..+.+.+...+.+.+.++- +.++..+..++..++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 35788888999999999988889987766532 3344555556777666664 344444445554443
No 362
>PRK09082 methionine aminotransferase; Validated
Probab=39.40 E-value=1.7e+02 Score=27.36 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=31.3
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
.++..++|..+..++..+- .+-.-.|++|...-..-...++..|++++.++-+
T Consensus 93 ~i~~t~G~~~al~~~~~~~-~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~ 145 (386)
T PRK09082 93 EITVTAGATEALFAAILAL-VRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQ 145 (386)
T ss_pred cEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC
Confidence 4666666666666555433 2222245555544444566677889999988753
No 363
>PRK09291 short chain dehydrogenase; Provisional
Probab=39.33 E-value=70 Score=27.67 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=35.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH-HHHHHHHHcCCEEEEECCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 131 (329)
..+|+..+|.-|.+++......|.+++++....... .........|.++..+..|
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 59 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLD 59 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEee
Confidence 458888999999999999888999888776532111 1122334455555554443
No 364
>PRK07677 short chain dehydrogenase; Provisional
Probab=39.27 E-value=1.9e+02 Score=24.93 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=40.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
..+|+..+|.-|.++|......|.+++++...... ....+.++..+.++..+..| .+...+...+..++
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEK 75 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45788888999999999988899976555432111 12223344456666555433 44444445554443
No 365
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=39.19 E-value=1.2e+02 Score=25.93 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=36.8
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 131 (329)
.+|+..+|.-|.+++......|.++++++..+.. ......++..|.++..+..|
T Consensus 4 ~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 59 (247)
T PRK09730 4 ALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQAD 59 (247)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4788889999999999988889987765544322 12234455667776655554
No 366
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.18 E-value=2.4e+02 Score=24.05 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=39.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH-HHHHHHHHcCCEEEEECCC---HHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVVRYGGQVIWSEAT---MHSRESVASKV 142 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~ 142 (329)
..-+|+..+|..|.+++......|.+++++....... .....+.. +.++..+..| .++..+..++.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHH
Confidence 3568888999999999999888899866665432111 11222332 5566555543 33444444444
No 367
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=39.02 E-value=3.4e+02 Score=25.59 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=41.5
Q ss_pred CCeEEEEecCC--CCCCccchhhHHHH--HhcCchhccCCe-EEEECCc--hHHHHHHHHHHHcCCCEEEEEcCCC
Q 020236 42 GRSLFFKCECF--QKGGAFKFRGASNA--VLSLDEDQAIKG-VVTHSSG--NHAAALSLAAKLRGIPAYIVIPKNA 110 (329)
Q Consensus 42 g~~i~~K~E~~--nptGS~KdR~a~~~--l~~a~~~~~~~~-vv~~ssG--N~g~a~A~~a~~~G~~~~i~~p~~~ 110 (329)
|+++..=+|++ +|..+++.|..... +..+.++.+.+. ++...++ +-.+..|..+...|.+++++.|...
T Consensus 159 GvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 159 GIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred CCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 45554344444 36688988877543 333333334433 3444444 4456667779999999999988654
No 368
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=38.98 E-value=2e+02 Score=24.78 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=43.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++..+|+..+|.-|.+++......|.+++++...... +.....++..|.++..+..| .++..+..+.+.++
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4456888889999999999988889987776543211 11223445567666555443 33344444444443
No 369
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=38.98 E-value=2e+02 Score=24.80 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=42.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++.-+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..| ..+..+..++...+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 3456788889999999999888889987776543211 12233455567666555443 33444444444443
No 370
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.93 E-value=1.5e+02 Score=25.72 Aligned_cols=32 Identities=22% Similarity=0.028 Sum_probs=24.0
Q ss_pred CCeEEEECC--chHHHHHHHHHHHcCCCEEEEEc
Q 020236 76 IKGVVTHSS--GNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 76 ~~~vv~~ss--GN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+..+|+..+ +.-|.++|..-.+.|.++++...
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 345666655 68999999998889998776643
No 371
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=38.85 E-value=3.7e+02 Score=26.02 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=39.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH-HHcCCEEEEEC-CCHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENV-VRYGGQVIWSE-ATMHSRESVA 139 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~-~~~~~~~~~a 139 (329)
+.+.++.++.++...+++.+...+|+.++.+.-..........+ ..++.+++.++ .+..+..+..
T Consensus 325 ~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~~d~~e~~~~i 391 (456)
T TIGR01283 325 KGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLDDANPRELLKLL 391 (456)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEeCCCHHHHHHHH
Confidence 34567777888999999999999999988764333233323333 33444444443 4555544433
No 372
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=38.83 E-value=1.3e+02 Score=27.31 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=28.9
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
.++....|..|.+++..++.+|++++++.+. +.+.+.++.+|++-+
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~v 217 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEF 217 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEE
Confidence 3333456888888888888888865444322 345566667776544
No 373
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=38.78 E-value=1.3e+02 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHH----HHHcCCEEEEEC
Q 020236 84 SGNHAAALSLAAKLRGIPAYIVIPKNA--PKCKVEN----VVRYGGQVIWSE 129 (329)
Q Consensus 84 sGN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 129 (329)
.+|...|++.+++++|+.++++.|+.. ++...+. .+..|+++...+
T Consensus 157 ~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 157 GNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 368888888888888888888888762 2222322 244677766553
No 374
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=38.77 E-value=2.1e+02 Score=27.07 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=42.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHH----HHHHHHcCCEEEEECCC-HHHHHHHHHHHHHHcCCEee
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCK----VENVVRYGGQVIWSEAT-MHSRESVASKVLEETGAVLV 151 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~----~~~~~~~Ga~v~~~~~~-~~~~~~~a~~~~~~~~~~~~ 151 (329)
..++..++|-.+..++..+- +.-.-.|+++....... ...++.+|++++.++.+ .++. .+.+..+...+++
T Consensus 77 ~~~v~~ssG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l---~~~i~~~tklV~i 152 (390)
T PRK08133 77 EACVATASGMAAILAVVMAL-LQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAW---RAAVRPNTKLFFL 152 (390)
T ss_pred CcEEEECCHHHHHHHHHHHH-hCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHH---HHhcCcCCeEEEE
Confidence 45666788888777665543 22223455555432221 23467799999999864 2222 1222223456666
Q ss_pred CCCCCcc
Q 020236 152 HPYNDGR 158 (329)
Q Consensus 152 ~~~~n~~ 158 (329)
..-.||.
T Consensus 153 e~p~Npt 159 (390)
T PRK08133 153 ETPSNPL 159 (390)
T ss_pred ECCCCCC
Confidence 4445553
No 375
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=38.71 E-value=1.5e+02 Score=26.86 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=43.1
Q ss_pred hhcC-CeEEEEecCCCCCCccch-hhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 39 SMSG-RSLFFKCECFQKGGAFKF-RGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 39 ~~~g-~~i~~K~E~~nptGS~Kd-R~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
+..| ++-.++.++-...|-+=| .|....+.........+.++.-.+|-.|+|++++...+|++.+.++.++
T Consensus 88 ~~iGAVNTv~~~~~g~l~G~NTD~~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 88 TQLGAVNTVVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred HHhCCceEEEECCCCcEEEEcCCHHHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3456 555444333334455555 3334444321111224567778889999999999999999877776554
No 376
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=38.65 E-value=1.1e+02 Score=26.24 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=37.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~ 131 (329)
.+-+|+..+|.-|.+++..-...|.+++++..... .....+.++..+.++..+..|
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 63 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVD 63 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34578888999999999998888987766654321 123344556667777666554
No 377
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=38.51 E-value=1.6e+02 Score=26.37 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=34.8
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
.+|...+|..|.+++..|+.+|.+++++.. ++.+.+.++.+|++-++
T Consensus 150 vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 150 VLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 344455699999999999999998666543 45677888889985443
No 378
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=38.50 E-value=1.5e+02 Score=28.78 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=38.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC--------------C----HHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA--------------P----KCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~ 126 (329)
+.|++-.+|-.|.+.|...++.|.++++|-.... + ....+.+..+|.+++
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 4688889999999999999999999998864321 1 123566788898876
No 379
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.48 E-value=2.9e+02 Score=24.74 Aligned_cols=68 Identities=13% Similarity=0.310 Sum_probs=44.6
Q ss_pred hhHHHHHhcCchhccCCeEEEEC-CchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcC-CEEEEEC
Q 020236 61 RGASNAVLSLDEDQAIKGVVTHS-SGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG-GQVIWSE 129 (329)
Q Consensus 61 R~a~~~l~~a~~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~G-a~v~~~~ 129 (329)
++....++++ ++-|..+++..- -=.+...+-.+|+++|+..+.+++.+++..+++.+.... .-|+.+.
T Consensus 109 ~Gie~F~~~~-~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 109 YGIEKFLRRA-KEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred hhHHHHHHHH-HHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 5555666665 344666766653 345555677778888888888888887777777776655 4455443
No 380
>PRK08643 acetoin reductase; Validated
Probab=38.44 E-value=1.9e+02 Score=24.91 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=42.3
Q ss_pred CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEee-CCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCC
Q 020236 111 PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLV-HPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGG 187 (329)
Q Consensus 111 ~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtG 187 (329)
-..-.+.+...|++|+.++.+.+...+...++.+.. +..++ -...++ ........++.++.+++|.+|...|..
T Consensus 15 G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~~~~~id~vi~~ag~~ 90 (256)
T PRK08643 15 GFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDR---DQVFAAVRQVVDTFGDLNVVVNNAGVA 90 (256)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH---HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 345566677789999988776544444444443321 11111 112222 223344556777777899999988764
No 381
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=38.44 E-value=1.3e+02 Score=29.03 Aligned_cols=52 Identities=31% Similarity=0.325 Sum_probs=37.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCC-CEEEEEcCC-----CCHHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGI-PAYIVIPKN-----APKCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~-~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~ 127 (329)
.+.|++-.+||.|.-+|..+.++|. +++++.... ......+.++..|.+++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 4678888899999999999999998 677776532 123445566667777653
No 382
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.40 E-value=2.5e+02 Score=24.44 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=39.5
Q ss_pred CCeEEEECC--chHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH-HHc-CCEEEEECC---CHHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSS--GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENV-VRY-GGQVIWSEA---TMHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ss--GN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~-~~~-Ga~v~~~~~---~~~~~~~~a~~~~~~ 145 (329)
+..+|+..+ +.-|.++|..-.+.|.++++.........+++.+ ... |.+++.+.. +.++..+..++..++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 344666644 7899999999888999877654322222333333 222 445554433 344555555555554
No 383
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.40 E-value=1.5e+02 Score=27.56 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHcCCCEEEEEcCCC--CHHHH----HHHHHcCCEEEEEC
Q 020236 85 GNHAAALSLAAKLRGIPAYIVIPKNA--PKCKV----ENVVRYGGQVIWSE 129 (329)
Q Consensus 85 GN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~----~~~~~~Ga~v~~~~ 129 (329)
.|.+.|++.+++.+|+.++++.|+.. ++..+ +..+..|.++...+
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 47888888888888888888888752 22222 22334677766553
No 384
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=38.35 E-value=1.3e+02 Score=27.83 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=32.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
..|+..+++..+..++..+-..+-.-.|++|+-.-..-...++.+|++++.++
T Consensus 81 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~ 133 (357)
T TIGR03539 81 TAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD 133 (357)
T ss_pred CeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC
Confidence 45776666677766543321122224566666554555566788999998885
No 385
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.35 E-value=1.5e+02 Score=28.65 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred hhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH----HHHHHHHHcCCEEEEECCC-HHH
Q 020236 60 FRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK----CKVENVVRYGGQVIWSEAT-MHS 134 (329)
Q Consensus 60 dR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~~~-~~~ 134 (329)
.+.....+..+ + +....+..+||-.+...+..+- ..-.-.|+++...-. .-...++.+|++++.++.. .++
T Consensus 66 ~~~Le~~lA~l--e-g~~~al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~ 141 (431)
T PRK08248 66 TDVFEKRIAAL--E-GGIGALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPEN 141 (431)
T ss_pred HHHHHHHHHHH--h-CCCcEEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHH
Confidence 44444545433 2 2446667788888887776543 222234555553221 2234567899999999863 222
Q ss_pred HHHHHHHHHHHcCCEeeCCCCCcc
Q 020236 135 RESVASKVLEETGAVLVHPYNDGR 158 (329)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~n~~ 158 (329)
.. +.+..+...+|+....||.
T Consensus 142 l~---~ai~~~tklV~l~sp~NPt 162 (431)
T PRK08248 142 FE---AAITDKTKALFAETIGNPK 162 (431)
T ss_pred HH---HhcCCCCeEEEEECCCCCC
Confidence 21 1222223566665545553
No 386
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=38.25 E-value=1.7e+02 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=28.2
Q ss_pred eEEEECCchHHHHHHHHHHHcC-CCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRG-IPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G-~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
.|+...+|..|.+++..|+.+| .+++++.. ++.+.+.++.+|++
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 3333336668888888888888 66655432 34566667777764
No 387
>PRK06701 short chain dehydrogenase; Provisional
Probab=38.18 E-value=2.4e+02 Score=25.18 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=43.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
...+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..| .+...+..++..+
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 456788889999999999988889988766543222 23344556667777665543 3333444444433
No 388
>PRK05650 short chain dehydrogenase; Provisional
Probab=38.18 E-value=2e+02 Score=25.14 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=42.7
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
-+|+..+|.-|.+++..-...|.+++++...... +.....++..|.++..+..| .++..+...+..++
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4788889999999999988889987776543211 22234456667777655543 33444444444443
No 389
>PRK08361 aspartate aminotransferase; Provisional
Probab=38.16 E-value=1.2e+02 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+- .+-.-.|++|...-..-...++..|++++.++-
T Consensus 94 ~~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 146 (391)
T PRK08361 94 DNVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPL 146 (391)
T ss_pred ccEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHHHHHcCCEEEEEec
Confidence 35676677777766554432 222234556554433345677778999988754
No 390
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=38.05 E-value=2.3e+02 Score=24.28 Aligned_cols=64 Identities=8% Similarity=0.086 Sum_probs=39.2
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH-HHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENV-VRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
-+|+..+|..|.++|......|.+++++.. + +.+.+.+ ...+.++..+..| .++..+...++.+
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r-~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGR-R--QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEEC-C--HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHH
Confidence 477888999999999998889998766543 2 2233322 3346566555443 3444444444444
No 391
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=37.85 E-value=1e+02 Score=23.19 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC----CHHHHHHHHHHHHHHcCCEeeCCCCC-cccccc-
Q 020236 89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA----TMHSRESVASKVLEETGAVLVHPYND-GRIISG- 162 (329)
Q Consensus 89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~n-~~~~~g- 162 (329)
..+|.+.++.|+++.++=.......-.+.++....+++.+.. +.....+.++...+. ..+ +...-|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~--------~p~~~iv~GG~ 89 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKER--------NPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTT--------CTTSEEEEEES
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhc--------CCCCEEEEECC
Confidence 455666777899888663332234556678888888886654 233334444442211 111 122333
Q ss_pred cCcchHHHHhhC-CCCCEEEEeCCC
Q 020236 163 QGTISLEFLEQV-PLLDTIIVPISG 186 (329)
Q Consensus 163 ~~t~~~Ei~~ql-~~~d~vv~~~Gt 186 (329)
+.+..+|-+.+. ...|+++..=|-
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~GegE 114 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVRGEGE 114 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEEETTS
T ss_pred chhcChHHHhccCcCcceecCCChH
Confidence 335555543322 567888776554
No 392
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=37.82 E-value=1.4e+02 Score=28.38 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=31.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+-. +-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 105 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred hhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 446666666777666555432 21224445443334446668889999988764
No 393
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=37.79 E-value=2.1e+02 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
.+.++.-..|..|.+++..++.+|.+++++-.. +.+..+.+.+|++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 355666677888888888888888755555332 344556666776643
No 394
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.75 E-value=1.6e+02 Score=22.44 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=35.9
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
.-+.++.+..-.+...+--.|..+|++.+++.|...++.-.+.++..|.+++
T Consensus 55 ~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 55 PIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp T-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 4567888888888888888888889999999998777777777788777765
No 395
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.73 E-value=1e+02 Score=29.09 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=57.4
Q ss_pred EecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 48 KCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 48 K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
|-.+.++ |. +.+-....+. +-.+.+..+..+||-.+..+|..+-..|=.-.|++|.-+-......+...||+.++
T Consensus 26 ~sg~i~~-G~-~v~~FE~~~a---e~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVF 100 (374)
T COG0399 26 KSGWLTG-GP-FVRRFEQAFA---EYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVF 100 (374)
T ss_pred HcCCeec-Ch-HHHHHHHHHH---HHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEE
Confidence 3334444 33 4444444333 22467788889999999999888555676678999998888889999999999999
Q ss_pred ECCC
Q 020236 128 SEAT 131 (329)
Q Consensus 128 ~~~~ 131 (329)
+|-+
T Consensus 101 vDid 104 (374)
T COG0399 101 VDID 104 (374)
T ss_pred EecC
Confidence 9764
No 396
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=37.68 E-value=2.7e+02 Score=24.05 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=30.7
Q ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEEecCC
Q 020236 168 LEFLEQVPLLDTIIVPISGGGLISGVALAAKSIK--PAIRILAAEPIG 213 (329)
Q Consensus 168 ~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~--~~~~vi~v~~~~ 213 (329)
.+++++-+++|+|+++ +.....|+..++++.+ .++.|+|.+...
T Consensus 174 ~~~l~~~~~~~aI~~~--~d~~a~g~~~al~~~g~~~dv~vvg~d~~~ 219 (270)
T cd06308 174 EELLQANPDIDLVYAH--NDPMALGAYLAAKRAGREKEIKFIGIDGLP 219 (270)
T ss_pred HHHHHhCCCCcEEEeC--CcHHHHHHHHHHHHcCCCCCcEEEEecCCc
Confidence 3455554568988776 4455568899998876 468888887654
No 397
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.49 E-value=1.7e+02 Score=26.20 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=25.2
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
.|+...+|..|.+++..|+..|.++++..+ ++.+.+.++.+|++.
T Consensus 163 ~vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~ 207 (336)
T cd08276 163 TVLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADH 207 (336)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 344445666777777777777776444432 234455555555543
No 398
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=37.45 E-value=2.3e+02 Score=26.07 Aligned_cols=53 Identities=9% Similarity=-0.046 Sum_probs=31.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIP-AYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~-~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+...+++.+..++..+- .+-. -.|++|.-.-..-....+.+|++++.++-
T Consensus 75 ~~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~ 128 (351)
T PRK01688 75 EQVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPT 128 (351)
T ss_pred HHEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeec
Confidence 34777666777766665442 2211 23444433333445667889999998864
No 399
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.37 E-value=3e+02 Score=25.57 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=43.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..+++....|--|...-..|+.+|-.=++++. ..+.+++.-+.+||+++.-..
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 56788999999999999999999988777763 457788888889999885544
No 400
>PRK13243 glyoxylate reductase; Reviewed
Probab=37.30 E-value=1.8e+02 Score=26.87 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=58.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYND 156 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n 156 (329)
++|..-..|+-|.++|..++.+|++++++-|.. ... ....+|++. .+.+ ++.++-+...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~----~~l~-------ell~~aDiV~l~l--- 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY----RPLE-------ELLRESDFVSLHV--- 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe----cCHH-------HHHhhCCEEEEeC---
Confidence 567777889999999999999999877665432 221 123345431 1232 2333334444432
Q ss_pred cccccccCcchHHHHhhCCCCCEEEEeCCCChHHH
Q 020236 157 GRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191 (329)
Q Consensus 157 ~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~ 191 (329)
|...+-...+..+.++++ +++.+++-+|.|+.+-
T Consensus 213 P~t~~T~~~i~~~~~~~m-k~ga~lIN~aRg~~vd 246 (333)
T PRK13243 213 PLTKETYHMINEERLKLM-KPTAILVNTARGKVVD 246 (333)
T ss_pred CCChHHhhccCHHHHhcC-CCCeEEEECcCchhcC
Confidence 222222333455777777 4789999999998764
No 401
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=37.29 E-value=2.1e+02 Score=27.73 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=44.2
Q ss_pred eEEEECCchHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHH-HHHHHHHHH--HcCCEeeCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIP-AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSR-ESVASKVLE--ETGAVLVHP 153 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~-~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~-~~~a~~~~~--~~~~~~~~~ 153 (329)
.|+..++...+.. ..++.+--+ -+|++..-.-..-++.++.+|++++.++.+.+.. .+..++..+ +...+|+.|
T Consensus 157 ~IiiT~G~q~al~--l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P 234 (459)
T COG1167 157 QIVITSGAQQALD--LLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTP 234 (459)
T ss_pred eEEEeCCHHHHHH--HHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECC
Confidence 4666555555544 444444334 4555555456677899999999999887652211 112222222 245677765
Q ss_pred -CCCcc
Q 020236 154 -YNDGR 158 (329)
Q Consensus 154 -~~n~~ 158 (329)
+.||.
T Consensus 235 ~~qNPt 240 (459)
T COG1167 235 TFQNPT 240 (459)
T ss_pred CCCCCC
Confidence 45664
No 402
>PRK09134 short chain dehydrogenase; Provisional
Probab=37.28 E-value=1.6e+02 Score=25.55 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=37.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+..+|+..+|.-|..++......|.+++++.-.... ..-...++..|.++..+..|
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQAD 67 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 456888899999999999999999988776543211 12223444557777665543
No 403
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=37.24 E-value=37 Score=26.99 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=26.3
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
++...+|.-+.+++..++.+|++++++=|+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4678899999999999999999999999874
No 404
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.16 E-value=2.8e+02 Score=24.11 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=37.0
Q ss_pred cchHHHHhhCC-CCCE-EEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC--chHHHHHHcCC
Q 020236 165 TISLEFLEQVP-LLDT-IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA--NDAAQSKAAGR 225 (329)
Q Consensus 165 t~~~Ei~~ql~-~~d~-vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~--~~~~~~~~~g~ 225 (329)
.+-.||.+.+. ..|. =+-|.+.+| ....++++.-.|.++++.+---.. ..+.++++.|-
T Consensus 120 ~TpsEi~~A~~~Ga~~vKlFPA~~~G--~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa 182 (222)
T PRK07114 120 GSLSEIGYAEELGCEIVKLFPGSVYG--PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGV 182 (222)
T ss_pred CCHHHHHHHHHCCCCEEEECcccccC--HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCC
Confidence 45568887765 3443 456777776 345666776678888887643332 34666777663
No 405
>PRK07062 short chain dehydrogenase; Provisional
Probab=37.08 E-value=2.4e+02 Score=24.40 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=41.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH-HHHHHHHH-c-CCEEEEECC---CHHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVVR-Y-GGQVIWSEA---TMHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~-~~~~~~~~-~-Ga~v~~~~~---~~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|......|.+++++....... ...+.+.. + +.++..+.. +.++..+..++..++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4568888899999999999888999877665432111 11222322 2 346654443 344445555555444
No 406
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=36.84 E-value=2.5e+02 Score=24.34 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=42.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH--HHHHHHH-HcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK--CKVENVV-RYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~--~~~~~~~-~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..++.-|.++|..-...|.+++++...+... ...+.++ ..|.++..+..| .++..+...+..++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4568888889999999999888999877664433211 1122232 346666655543 44555555555554
No 407
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=36.82 E-value=2.5e+02 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=15.8
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIV 105 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~ 105 (329)
++...+|..|.+++......|.+++++
T Consensus 32 lVlGgtG~iG~~~a~~l~~~g~~V~l~ 58 (194)
T cd01078 32 VVLGGTGPVGQRAAVLLAREGARVVLV 58 (194)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 444445777777777666666544443
No 408
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.81 E-value=1.2e+02 Score=25.89 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCC--CCCcccccccCcchHHHHhhCCCCCEEEEeCCCC
Q 020236 112 KCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHP--YNDGRIISGQGTISLEFLEQVPLLDTIIVPISGG 187 (329)
Q Consensus 112 ~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtG 187 (329)
..-.+.+...|.+|+.+..+.....+...++..........+ ..++. .......++.++++.+|.+|...|..
T Consensus 21 ~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 21 RAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYE---EVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHH---HHHHHHHHHHHHcCCccEEEEcCccc
Confidence 445566777899999988765544444444432221111112 22222 22234456677778899999998764
No 409
>PRK06720 hypothetical protein; Provisional
Probab=36.81 E-value=2e+02 Score=23.52 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=42.2
Q ss_pred CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCC
Q 020236 111 PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISG 186 (329)
Q Consensus 111 ~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~Gt 186 (329)
-..-...+...|++|+.++.+.....+.++++.+........+.+ .........+..++.++.+++|.+|..+|.
T Consensus 29 G~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~v~~~v~~~~~~~G~iDilVnnAG~ 103 (169)
T PRK06720 29 GRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYD-MEKQGDWQRVISITLNAFSRIDMLFQNAGL 103 (169)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 344556667789999988876554444445554322222211222 112233344455666677789999988763
No 410
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=36.79 E-value=1.5e+02 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=26.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+.|.....|..+.-++.+|+++|++++++.+
T Consensus 3 kkili~g~g~~~~~~~~aa~~lG~~vv~~~~ 33 (449)
T TIGR00514 3 DKILIANRGEIALRILRACKELGIKTVAVHS 33 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 3577778999999999999999999998865
No 411
>PRK06138 short chain dehydrogenase; Provisional
Probab=36.78 E-value=2.5e+02 Score=24.00 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|--|.++|..-...|.+++++...... ......+. .+.++..+..| .+...+..++..++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888899999999999877789876665532211 11222233 46666655543 44444445554443
No 412
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=36.76 E-value=1.7e+02 Score=27.03 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCC-EEEEEcCC-----CCHHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIP-AYIVIPKN-----APKCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~-~~i~~p~~-----~~~~~~~~~~~~Ga~v~~ 127 (329)
.+.++...+|+.|.-+|......|.+ ++++.+.. ......+.|+..|.+++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~ 229 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLE 229 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEee
Confidence 35788889999999999887778998 88876532 123345557777777654
No 413
>PRK05942 aspartate aminotransferase; Provisional
Probab=36.72 E-value=1.5e+02 Score=27.90 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=29.3
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.++..+++..|..++..+- ..-.-.|++|.-.-..-...++..|++++.++-
T Consensus 99 ~i~vt~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 150 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAY-VNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIIL 150 (394)
T ss_pred eEEEccChHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHHcCCEEEEeec
Confidence 3666566677776655432 221223444444333344555678999988754
No 414
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=36.70 E-value=1.6e+02 Score=28.69 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=27.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+.|+.+..|-.+..+..+|+.+|++++++.+
T Consensus 6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~s 36 (467)
T PRK12833 6 RKVLVANRGEIAVRIIRAARELGMRTVAACS 36 (467)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEEC
Confidence 5688999999999999999999999988764
No 415
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.61 E-value=3.1e+02 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCC
Q 020236 84 SGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123 (329)
Q Consensus 84 sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga 123 (329)
.|..|.++...|+.+|++++++.. +..+.+.++.+|+
T Consensus 174 ~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~ 210 (345)
T cd08260 174 CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGA 210 (345)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCC
Confidence 677777777777777776555432 2445555566666
No 416
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=36.55 E-value=1.6e+02 Score=26.71 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=24.9
Q ss_pred ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
..+|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++
T Consensus 168 ~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 168 TGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGAT 208 (340)
T ss_pred ECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCc
Confidence 3456677777777777777644444 2345566666666664
No 417
>PRK07985 oxidoreductase; Provisional
Probab=36.52 E-value=2.2e+02 Score=25.43 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=42.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC-CC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN-AP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|......|.++++..... .. +.....++..|.+++.+..| .+...+..++..+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568888899999999999888999887654321 11 12223345567776655443 34444445554443
No 418
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=36.47 E-value=2.2e+02 Score=24.28 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=41.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
..-+|+..+|.-|.+++..-...|..++++...... ....+.++..+.++..+..+ .+...+..+++.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345888889999999999988889887766533211 11223345556666655554 3344444444443
No 419
>PRK09242 tropinone reductase; Provisional
Probab=36.39 E-value=2.5e+02 Score=24.16 Aligned_cols=70 Identities=14% Similarity=0.045 Sum_probs=41.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH-HHHHHHHHc--CCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVVRY--GGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~-~~~~~~~~~--Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.+++......|.+++++....... .....++.. +.++..+..| .++..+...+..++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568888899999999999888899876665432111 112233333 6677666554 33444444444443
No 420
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=36.30 E-value=2.1e+02 Score=26.67 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=30.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
..++....|..|.+++..++.+|.+-++++. .++.+++.++.+|++
T Consensus 192 ~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 192 STCAVFGLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 3444446788888888888888884334432 235667777778874
No 421
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=36.23 E-value=4e+02 Score=26.18 Aligned_cols=91 Identities=19% Similarity=0.147 Sum_probs=54.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN 155 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (329)
.++++....|+-|+++|..++.+|.+++++-+ + +.+.......|+++. +.++ +.++-+.+.....
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~-d--p~~a~~A~~~G~~~~----~lee-------ll~~ADIVI~atG- 318 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEI-D--PICALQAAMEGYQVV----TLED-------VVETADIFVTATG- 318 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC-C--chhHHHHHhcCceec----cHHH-------HHhcCCEEEECCC-
Confidence 57789999999999999999999997555422 2 122222233577654 1222 2233333333211
Q ss_pred CcccccccCcchHHHHhhCCCCCEEEEeCCCCh
Q 020236 156 DGRIISGQGTISLEFLEQVPLLDTIIVPISGGG 188 (329)
Q Consensus 156 n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg 188 (329)
....+..+.++++ ++..+++-+|-+-
T Consensus 319 ------t~~iI~~e~~~~M-KpGAiLINvGr~d 344 (476)
T PTZ00075 319 ------NKDIITLEHMRRM-KNNAIVGNIGHFD 344 (476)
T ss_pred ------cccccCHHHHhcc-CCCcEEEEcCCCc
Confidence 1233445666666 4678888888885
No 422
>PRK07069 short chain dehydrogenase; Validated
Probab=36.22 E-value=1.5e+02 Score=25.28 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=24.7
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPK 108 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~ 108 (329)
.+|+..+|.-|.++|..-...|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4778888999999999877789887766643
No 423
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=36.16 E-value=2.2e+02 Score=25.71 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=20.9
Q ss_pred ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCC
Q 020236 82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123 (329)
Q Consensus 82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga 123 (329)
..+|..|.+++..|+.+|.+.++++. .++.+...++.+|+
T Consensus 172 ~g~g~vG~~~~~lak~~G~~~v~~~~--~s~~~~~~~~~~g~ 211 (339)
T cd08232 172 TGAGPIGALVVAAARRAGAAEIVATD--LADAPLAVARAMGA 211 (339)
T ss_pred ECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCC
Confidence 33566666666666767764333332 12344445555555
No 424
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.15 E-value=2.8e+02 Score=23.85 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=43.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|--|.++|..-...|.++++..... +...+.++..+...+.++- +.++..+..++..++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 4568888899999999999888898877654332 3344455555666666654 344555555555444
No 425
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.14 E-value=2.8e+02 Score=23.81 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC----CCCEEEEEec
Q 020236 170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIK----PAIRILAAEP 211 (329)
Q Consensus 170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~----~~~~vi~v~~ 211 (329)
+++..+.||.|+++ +.....|+..++++.+ .++.|++.+.
T Consensus 172 ~l~~~~~~~ai~~~--~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~ 215 (270)
T cd06296 172 LLALPERPTAIFAG--NDLMALGVYEAARERGLRIPEDLSVVGFDD 215 (270)
T ss_pred HHhCCCCCcEEEEc--CcHHHHHHHHHHHHhCCCCCCceEEEEECC
Confidence 33333468888876 4566678899998876 3567777753
No 426
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=36.12 E-value=1.9e+02 Score=24.89 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=47.9
Q ss_pred CEEEEEcCC--CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCC
Q 020236 101 PAYIVIPKN--APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLD 178 (329)
Q Consensus 101 ~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d 178 (329)
+.+++.-.. .-..-.+.+...|++|+.++.+.....+...++..........+.| ............++.++.+.+|
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id 88 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFN-VTHKQEVEAAIEHIEKDIGPID 88 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecC-CCCHHHHHHHHHHHHHhcCCCC
Confidence 344555432 3345566677789999998876555454454544332222222221 1112223334456667777899
Q ss_pred EEEEeCCCC
Q 020236 179 TIIVPISGG 187 (329)
Q Consensus 179 ~vv~~~GtG 187 (329)
.+|...|..
T Consensus 89 ~vi~~ag~~ 97 (254)
T PRK08085 89 VLINNAGIQ 97 (254)
T ss_pred EEEECCCcC
Confidence 999998863
No 427
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.06 E-value=2.8e+02 Score=23.71 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC-----CCCEEEEEec
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIK-----PAIRILAAEP 211 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~-----~~~~vi~v~~ 211 (329)
++++.-+++|+|++. ++....|+..++++.+ .++.+++.+.
T Consensus 167 ~~l~~~~~~~~i~~~--~~~~a~~~~~~l~~~~~~~~p~di~i~~~d~ 212 (266)
T cd06278 167 RLLASRPRPDAIFCA--NDLLAIGVMDAARQEGGLRVPEDVSVIGFDD 212 (266)
T ss_pred HHHhcCCCCCEEEEc--CcHHHHHHHHHHHHhcCCCCccceEEEEeCC
Confidence 334333468888876 3555668888888753 2467777753
No 428
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.99 E-value=1.1e+02 Score=27.11 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=38.4
Q ss_pred CeEEEECC--chHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH-HHcCCE-EEEECC-CHHHHHHHHHHHHHH
Q 020236 77 KGVVTHSS--GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENV-VRYGGQ-VIWSEA-TMHSRESVASKVLEE 145 (329)
Q Consensus 77 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~-~~~Ga~-v~~~~~-~~~~~~~~a~~~~~~ 145 (329)
..+|+..+ +.-|.++|......|.++++.........+++.+ +.+|.. .+.++- +.++..+..+++.++
T Consensus 12 ~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 12 RGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence 44666554 6788999999888999876553221122334433 334532 233443 345555556665554
No 429
>PRK07904 short chain dehydrogenase; Provisional
Probab=35.94 E-value=2.7e+02 Score=24.13 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=38.4
Q ss_pred CeEEEECCchHHHHHHHHHHHc-CCCEEEEEcCCCC--HHHHHHHHHcCC-EEEEECC---CHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLR-GIPAYIVIPKNAP--KCKVENVVRYGG-QVIWSEA---TMHSRESVASKVL 143 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~-G~~~~i~~p~~~~--~~~~~~~~~~Ga-~v~~~~~---~~~~~~~~a~~~~ 143 (329)
..+|+..+|-.|.++|...... |.+++++.....+ ....+.++..|. ++..+.. +.++..+..++..
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 4577788889999999886666 4877776543322 222344555553 4544433 2344444444443
No 430
>PRK08264 short chain dehydrogenase; Validated
Probab=35.94 E-value=1.1e+02 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=26.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCC-CEEEEEc
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGI-PAYIVIP 107 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~-~~~i~~p 107 (329)
..-+|+..+|.-|.++|......|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 4468888999999999999989998 7666653
No 431
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=35.93 E-value=59 Score=27.12 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=59.1
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHH-HHHHHH-cCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCK-VENVVR-YGGQVIWSEATMHSRESVASKVLEETGAVLVHPYND 156 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~-~~~~~~-~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n 156 (329)
|..-.+|..|.++|..+...|++++++-+......+ .+.++. +...+ -.+... .+...... ....+...++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~--~~~~~~--~~~~~~~~--~~i~~~~dl~~ 75 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLV--RKGRLS--QEEADAAL--ARISFTTDLEE 75 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHH--HTTTTT--HHHHHHHH--HTEEEESSGGG
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhh--hhccch--hhhhhhhh--hhcccccCHHH
Confidence 556678999999999999999999998764321111 111111 00000 000000 00111111 12223332221
Q ss_pred ----cccccccC---cchHHHHhhCC---CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCC
Q 020236 157 ----GRIISGQG---TISLEFLEQVP---LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213 (329)
Q Consensus 157 ----~~~~~g~~---t~~~Ei~~ql~---~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~ 213 (329)
.+.++... ..=.++++++. .+|.+++...++-.+.-++..+. .+-|++|+...+
T Consensus 76 ~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~---~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 76 AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALS---RPERFIGMHFFN 139 (180)
T ss_dssp GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSS---TGGGEEEEEE-S
T ss_pred HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccC---cCceEEEEeccc
Confidence 11222211 12235666655 58999999888888777665543 345788887654
No 432
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.91 E-value=1.2e+02 Score=26.20 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=42.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
++.-+|+..+|--|.++|..-...|.+++++...... +...+.++..+.++..+..| .+...+...++.++
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3456888888999999999888889976555432111 12233445567777666554 33333444444443
No 433
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=35.82 E-value=67 Score=32.78 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=38.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC---------C---------HHHHHHHHHcCCEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA---------P---------KCKVENVVRYGGQVI 126 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~ 126 (329)
.+.|++-.+|-.|.+.|...++.|.+++||=.... + ....+.++.+|.++.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEE
Confidence 45688999999999999999999999888853321 1 123556777887765
No 434
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=35.77 E-value=3.9e+02 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=18.1
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVI 106 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~ 106 (329)
|..-.+|..+.+++++++..|+.+.+++
T Consensus 3 iliiG~G~~~~~l~~~~~~~~~~~~~~~ 30 (423)
T TIGR00877 3 VLVIGNGGREHALAWKLAQSPLVKYVYV 30 (423)
T ss_pred EEEECCChHHHHHHHHHHhCCCccEEEE
Confidence 4445666667777777777766655554
No 435
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=35.75 E-value=62 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=28.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
+|-.-..|..|+-++.+|+.+|++++++-|..
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 45666899999999999999999999999865
No 436
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=35.74 E-value=1.9e+02 Score=26.42 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=36.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
...|+..+++..+..++..+ .-.-.|++|.-.-..-....+.+|++++.++.
T Consensus 64 ~~~I~it~Gs~~al~~~~~~---~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~ 115 (330)
T PRK05664 64 APQLLPVAGSQAAIQALPRL---RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE 115 (330)
T ss_pred CCCEEECcCHHHHHHHHHHc---cCCCEEEEcCCChHHHHHHHHHcCCeEEEech
Confidence 35677777788887776432 22234666665556667888999999999975
No 437
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=35.64 E-value=1.1e+02 Score=26.26 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=42.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC--HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP--KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
.-+|+..+|.-|.++|..-.+.|..+++..-.+.. ......++..+.+++.+..| .++..+..+++.+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 45788888999999999988889887665433211 12344556667777666543 3344444444443
No 438
>CHL00194 ycf39 Ycf39; Provisional
Probab=35.63 E-value=1.6e+02 Score=26.59 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=34.7
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
-+|+..+|..|..++......|.+++++.... .+...+...|.+++..+
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~---~~~~~l~~~~v~~v~~D 51 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRNL---RKASFLKEWGAELVYGD 51 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcCh---HHhhhHhhcCCEEEECC
Confidence 47888999999999999888899988887542 12233344566665544
No 439
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=35.62 E-value=1.5e+02 Score=27.30 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=29.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+-.-| +.++..|. -..-...++..|++++.++-
T Consensus 73 ~~i~it~Ga~~~l~~~~~~l~~g-~viv~~P~--y~~~~~~~~~~g~~~~~v~~ 123 (356)
T PRK08056 73 SWILAGNGETESIFAVVSGLKPR-RAMIVTPG--FAEYRRALQQVGCEIRRYSL 123 (356)
T ss_pred hhEEECCCHHHHHHHHHHHhCCC-CEEEeCCC--cHHHHHHHHHcCCeEEEEec
Confidence 34666666666665554432234 43333232 33345567889999998864
No 440
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=35.56 E-value=1.6e+02 Score=26.23 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=32.9
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
.+|...+|..|.+++..|+.+|.+++++.+ ++.+++.++.+|++-+
T Consensus 150 vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 150 VLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred EEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 344455699999999999999988554433 3566777788888544
No 441
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=35.54 E-value=1.8e+02 Score=25.73 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=29.7
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
+|...+|..|.++...|+.+|.+++.+.+. +.+.+.++.+|++-+
T Consensus 147 lV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 147 LIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred EEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 444456888888888888888875554332 345666667777543
No 442
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=35.53 E-value=2.9e+02 Score=23.73 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=27.6
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC----CCCEEEEEe
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIK----PAIRILAAE 210 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~----~~~~vi~v~ 210 (329)
+++++-++||+||++ +.....|+..++++.+ .++.++|.+
T Consensus 171 ~~l~~~~~~~ai~~~--~~~~a~~~~~~l~~~g~~~p~~i~vig~d 214 (268)
T cd06273 171 QLLEQPPRPTAVICG--NDVLALGALYEARRLGLSVPEDLSIVGFD 214 (268)
T ss_pred HHHcCCCCCCEEEEc--ChHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 444433468999874 5666778888888876 256677766
No 443
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=35.50 E-value=3.1e+02 Score=24.15 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH---cCCEeeC--CCC--Cccc
Q 020236 90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE---TGAVLVH--PYN--DGRI 159 (329)
Q Consensus 90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~---~~~~~~~--~~~--n~~~ 159 (329)
+++++-+++|-++.++ .-+.--.+++.+ +|.+-..+-.- .+..-..-+.+.++ ++.+.+. |-. |...
T Consensus 22 nig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQtrdKdalt 98 (272)
T COG2894 22 NIGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQTRDKDALT 98 (272)
T ss_pred HHHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhccccCCceEecccccccCcccCC
Confidence 3444444577776655 444444444544 67774433221 11111223334443 2344332 221 2234
Q ss_pred ccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEEecCCC
Q 020236 160 ISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIK--PAIRILAAEPIGA 214 (329)
Q Consensus 160 ~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~--~~~~vi~v~~~~~ 214 (329)
.++...+..|+.+ ..+|||+|-+ -+||-.||+..- -+--+|.+.|+-+
T Consensus 99 ~E~v~~vv~eL~~--~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvS 148 (272)
T COG2894 99 PEGVKKVVNELKA--MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVS 148 (272)
T ss_pred HHHHHHHHHHHHh--cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCcc
Confidence 4555444334333 3699999865 567777776542 3455666666655
No 444
>PRK08175 aminotransferase; Validated
Probab=35.44 E-value=1.7e+02 Score=27.42 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=29.3
Q ss_pred eEEEECCchHHHHHHHHHH-HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAK-LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~-~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.++..++++.|..+...+- .-| -.|++|+-.-..-....+..|++++.++-
T Consensus 93 ~i~~t~G~~~~l~~~~~~~~~~g--d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 144 (395)
T PRK08175 93 EAIVTIGSKEGLAHLMLATLDHG--DTVLVPNPSYPIHIYGAVIAGAQVRSVPL 144 (395)
T ss_pred cEEEccCcHHHHHHHHHHhCCCC--CEEEEcCCCCcchHHHHHHcCCeEEEEec
Confidence 5776677777776544322 223 34555544333334445678999988764
No 445
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=35.39 E-value=1.2e+02 Score=27.72 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHcCCCEEEEEcCCC-CH-HHH----HHHHHcCCEEEEECC
Q 020236 85 GNHAAALSLAAKLRGIPAYIVIPKNA-PK-CKV----ENVVRYGGQVIWSEA 130 (329)
Q Consensus 85 GN~g~a~A~~a~~~G~~~~i~~p~~~-~~-~~~----~~~~~~Ga~v~~~~~ 130 (329)
-|.+.|++.+++++|+.++++.|+.. +. ..+ ...+..|+++...+.
T Consensus 157 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d 208 (302)
T PRK14805 157 NNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSD 208 (302)
T ss_pred CccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcC
Confidence 46678888888888888888888762 22 222 123556777766553
No 446
>PRK06500 short chain dehydrogenase; Provisional
Probab=35.31 E-value=2.8e+02 Score=23.57 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHH-HHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKV-ENVVRYGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~-~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+.-+|+..+|.-|.+++......|.+++++.. + ..+. ...+.+|.++..+..+ .++..+..++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r-~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGR-D--PASLEAARAELGESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecC-C--HHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 45688889999999999998889987765533 2 2222 2334457776554433 33434444444433
No 447
>PRK08017 oxidoreductase; Provisional
Probab=35.31 E-value=2.4e+02 Score=24.20 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=36.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.-+|+..+|.-|.+++..-...|.+++++... ..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 35777888999999999988889887665432 3455556667877776654
No 448
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=35.00 E-value=1.5e+02 Score=30.84 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=37.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCC-EEEEEcCC---CC--HHHHHHHHHcCCEEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIP-AYIVIPKN---AP--KCKVENVVRYGGQVIW 127 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~-~~i~~p~~---~~--~~~~~~~~~~Ga~v~~ 127 (329)
.+.|++-.+||+|.-+|..+.++|.+ ++++.... .+ ...+..++..|.+++.
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 35788889999999999999999998 88887643 11 2233455666766553
No 449
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=34.95 E-value=1.5e+02 Score=26.77 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=26.1
Q ss_pred EEEECCchHHHHHHHHHHHc-CCCEEEEEcCCCCHHHHHHHHHcCCEE
Q 020236 79 VVTHSSGNHAAALSLAAKLR-GIPAYIVIPKNAPKCKVENVVRYGGQV 125 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~~~~~~~~~Ga~v 125 (329)
+|...+|..|.+++..|+.+ |.+++.+... +.+.+.++.+|++-
T Consensus 153 lV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 153 LIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHH 197 (336)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCE
Confidence 34445677777777777776 7765554322 34555556667643
No 450
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=34.92 E-value=1.6e+02 Score=28.55 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=38.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC---------C---------HHHHHHHHHcCCEEE
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA---------P---------KCKVENVVRYGGQVI 126 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~ 126 (329)
.+.|++-.+|-.|.+.|..+++.|.+++++-.... + ....++++.+|.+++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 209 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFH 209 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEE
Confidence 35688899999999999999999999888743221 1 124566778888775
No 451
>PLN02623 pyruvate kinase
Probab=34.91 E-value=4.2e+02 Score=26.75 Aligned_cols=120 Identities=13% Similarity=0.056 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCCEEEEE---------cCC--CCHHHHHHHHHcCCEEEEECCC------HHHHHHHHHHHHHH-cC-CE
Q 020236 89 AALSLAAKLRGIPAYIVI---------PKN--APKCKVENVVRYGGQVIWSEAT------MHSRESVASKVLEE-TG-AV 149 (329)
Q Consensus 89 ~a~A~~a~~~G~~~~i~~---------p~~--~~~~~~~~~~~~Ga~v~~~~~~------~~~~~~~a~~~~~~-~~-~~ 149 (329)
.-+...|+..|.++.+.. |.. +.-..+......|++.+...++ ..++.+...+.+++ +. ..
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 445667999999998643 322 2224567778889998877653 34555555544433 11 11
Q ss_pred eeCCCC---Cc---ccccccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236 150 LVHPYN---DG---RIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA 214 (329)
Q Consensus 150 ~~~~~~---n~---~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~ 214 (329)
+...+. .. ...+.....+.++.+.++ .. |++.+-+|.+.--+ ....|...|+++.+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~-a~-Ivv~T~sG~tA~~l----Sr~RP~~pI~avT~~~~ 510 (581)
T PLN02623 446 EGTTPPNLGQAFKNHMSEMFAFHATMMANTLG-TS-IIVFTRTGFMAILL----SHYRPSGTIFAFTNEKR 510 (581)
T ss_pred cchhhhhhccccCCChHHHHHHHHHHHHHhcC-Cc-EEEECCCcHHHHHH----HhhCCCCCEEEECCCHH
Confidence 110110 00 011112222334555554 34 88998888876544 44678999999987653
No 452
>PLN02231 alanine transaminase
Probab=34.83 E-value=3.5e+02 Score=26.91 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=32.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+-...-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 192 e~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l 245 (534)
T PLN02231 192 NDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYL 245 (534)
T ss_pred ccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEec
Confidence 457766666776666554432111234555554445556777889999988753
No 453
>PRK07035 short chain dehydrogenase; Provisional
Probab=34.65 E-value=2e+02 Score=24.70 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=46.3
Q ss_pred CEEEEEcCC--CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCC
Q 020236 101 PAYIVIPKN--APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLD 178 (329)
Q Consensus 101 ~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d 178 (329)
+.+++.-.. .-..-.+.+...|++|+.+..+.+...+..+++.+.......-+.+ ............++.++++++|
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id 87 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACH-IGEMEQIDALFAHIRERHGRLD 87 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHHHHHHHHHcCCCC
Confidence 344554322 3345566777789999999876655555555554332211111111 1112222334445666677899
Q ss_pred EEEEeCCC
Q 020236 179 TIIVPISG 186 (329)
Q Consensus 179 ~vv~~~Gt 186 (329)
+++...|.
T Consensus 88 ~li~~ag~ 95 (252)
T PRK07035 88 ILVNNAAA 95 (252)
T ss_pred EEEECCCc
Confidence 99988874
No 454
>PRK07063 short chain dehydrogenase; Provisional
Probab=34.56 E-value=2.8e+02 Score=23.95 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=41.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHH--cCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVR--YGGQVIWSEAT---MHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~--~Ga~v~~~~~~---~~~~~~~a~~~~~~ 145 (329)
+..+|+.++|--|.++|..-...|.+++++...... ....+.++. .+.++..+..| .++..+..++..++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456888888999999999888889987665432111 112233333 45566555443 34444555555444
No 455
>PRK06139 short chain dehydrogenase; Provisional
Probab=34.48 E-value=1.6e+02 Score=27.13 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=47.4
Q ss_pred CEEEEEcCC--CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCC
Q 020236 101 PAYIVIPKN--APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLD 178 (329)
Q Consensus 101 ~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d 178 (329)
+.++++-.+ .-..-.+.+...|++|+.+..+.+...+..+++.+........+.| ....+....+..++.++.+.+|
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD 86 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTD-VTDADQVKALATQAASFGGRID 86 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHHHHHHHHhcCCCC
Confidence 344444332 3345567777889999998877655544444443322222111111 1112223334556666667899
Q ss_pred EEEEeCCCC
Q 020236 179 TIIVPISGG 187 (329)
Q Consensus 179 ~vv~~~GtG 187 (329)
.+|..+|.+
T Consensus 87 ~lVnnAG~~ 95 (330)
T PRK06139 87 VWVNNVGVG 95 (330)
T ss_pred EEEECCCcC
Confidence 999998853
No 456
>PLN02702 L-idonate 5-dehydrogenase
Probab=34.44 E-value=2.2e+02 Score=26.18 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=31.9
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 127 (329)
.++....|..|.++...++.+|.+.++.+.. ++.+...++.+|++...
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 3444356788888888888888876555543 36666777778876543
No 457
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=34.41 E-value=1.2e+02 Score=28.05 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=33.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+-..+-.-.|++|+-.-..-....+.+|++++.++.
T Consensus 87 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~ 140 (364)
T PRK07865 87 AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS 140 (364)
T ss_pred ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC
Confidence 457777777777766543321222345666654444445667789999998863
No 458
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=34.34 E-value=1.6e+02 Score=27.38 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHH----HcCCEEEEEC
Q 020236 85 GNHAAALSLAAKLRGIPAYIVIPKN--APKCKVENVV----RYGGQVIWSE 129 (329)
Q Consensus 85 GN~g~a~A~~a~~~G~~~~i~~p~~--~~~~~~~~~~----~~Ga~v~~~~ 129 (329)
.|.+.|+..+++++|+.++++.|+. .++.-+..++ ..|.++...+
T Consensus 164 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 164 TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 6888888888888888888888876 3333333332 3577776553
No 459
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=34.34 E-value=2.7e+02 Score=24.14 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH-HHcCCEEEEECC---CHHHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENV-VRYGGQVIWSEA---TMHSRESVASKVLEE 145 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~~---~~~~~~~~a~~~~~~ 145 (329)
+..+|+..+|.-|.++|......|.+++++-.. ..+.+.+ ..++.++..+.. +.++..+..++..++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 456888888999999999988899987665432 2233332 334555544433 344455555555444
No 460
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=34.25 E-value=1.4e+02 Score=27.88 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=29.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|+..+++..+..++..+- ..-.-.|++|+-.-..-....+..|++++.++-
T Consensus 95 ~ii~t~G~~~~i~~~~~~~-~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~ 146 (385)
T PRK09276 95 EVISLIGSKEGIAHIPLAF-VNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPL 146 (385)
T ss_pred cEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcChHHHHHHcCCEEEEEec
Confidence 3665555667665554332 222234555554434445567789999987764
No 461
>PLN02253 xanthoxin dehydrogenase
Probab=33.96 E-value=2.2e+02 Score=25.00 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=26.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
+..+|+..+|.-|.++|..-...|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45688889999999999998888988777643
No 462
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=33.94 E-value=2.1e+02 Score=27.51 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=25.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
++|+...+|.++..++.+|+.+|++++++.+
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~~~v~~~~ 33 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIYS 33 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEec
Confidence 4577778899999999999999999888763
No 463
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=33.93 E-value=1.1e+02 Score=29.22 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=35.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
..++|++...|+-|..+|..++.+|.+++++=. + +.+.......|+++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~-d--p~r~~~A~~~G~~v~ 242 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEV-D--PIRALEAAMDGFRVM 242 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeC-C--hhhHHHHHhcCCEeC
Confidence 356899999999999999999999998655422 2 233444455687654
No 464
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.90 E-value=2.6e+02 Score=24.21 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEEecCCCchHHHHHHcCC
Q 020236 169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKP--AIRILAAEPIGANDAAQSKAAGR 225 (329)
Q Consensus 169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~--~~~vi~v~~~~~~~~~~~~~~g~ 225 (329)
+++++-+++|+||+. +.....|+..++++.+. ++.++|.+- ++...+.++.|.
T Consensus 178 ~~l~~~~~~~ai~~~--~d~~a~g~~~al~~~g~~~~~~ivg~d~--~~~~~~~i~~g~ 232 (274)
T cd06311 178 DLLTKFPKIDAVWAH--DDDMAVGVLAAIKQAGRTDIKFVVGGAG--SKDMIKMIMDGD 232 (274)
T ss_pred HHHHhCCCcCEEEEC--CCcHHHHHHHHHHHcCCCCCceEEEeCC--CHHHHHHHHCCC
Confidence 344443468888775 34456788899988763 456666543 444455555553
No 465
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.83 E-value=1.5e+02 Score=26.23 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=27.1
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga 123 (329)
+|...+|..|.+++..|+.+|.+++.+.+. .+.+.++.+|+
T Consensus 148 li~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~ 188 (319)
T cd08267 148 LINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGA 188 (319)
T ss_pred EEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCC
Confidence 444456888888888888888876555431 45555566665
No 466
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=33.79 E-value=63 Score=31.01 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.3
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
||+..+|-.|.+.|.+|++.|.++.++-+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 6788999999999999999999999987654
No 467
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.71 E-value=2.1e+02 Score=23.22 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCC-------------hHHHHHHHHHHHhCCCCEEEEEecC
Q 020236 176 LLDTIIVPISGG-------------GLISGVALAAKSIKPAIRILAAEPI 212 (329)
Q Consensus 176 ~~d~vv~~~GtG-------------g~~~Gi~~~~k~~~~~~~vi~v~~~ 212 (329)
+||.|++.+|+- ..+..+...++..+|..+|+.+.+.
T Consensus 56 ~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 56 PPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred CCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 699999999864 1223333344555588888888764
No 468
>PRK07503 methionine gamma-lyase; Provisional
Probab=33.70 E-value=2e+02 Score=27.29 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=41.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH----HHHHHHHHcCCEEEEECCC-HHHHHHHHHHHHHHcCCEee
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK----CKVENVVRYGGQVIWSEAT-MHSRESVASKVLEETGAVLV 151 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~~~-~~~~~~~a~~~~~~~~~~~~ 151 (329)
...+..++|-.+..++..+- .+-.-.|+++...-. .....++.+|+++..++.+ .++ ..+.+..+...+|+
T Consensus 81 ~~~i~~~sG~~Al~~~l~~l-l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~---l~~~i~~~tklV~l 156 (403)
T PRK07503 81 EAAVALASGMGAITATLWTL-LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAA---LKAAISDKTRMVYF 156 (403)
T ss_pred CcEEEEcCHHHHHHHHHHHH-cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHH---HHHhcCccCcEEEE
Confidence 34566678887777666543 333334555543221 1234567799999999864 222 22222223456666
Q ss_pred CCCCCcc
Q 020236 152 HPYNDGR 158 (329)
Q Consensus 152 ~~~~n~~ 158 (329)
....||.
T Consensus 157 e~p~NPt 163 (403)
T PRK07503 157 ETPANPN 163 (403)
T ss_pred eCCCCCC
Confidence 4444553
No 469
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=33.70 E-value=2.2e+02 Score=26.48 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=29.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
..|+....|..|.+++..++.+|...++++. .+..+.+.++.+|+.
T Consensus 178 ~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~ 223 (375)
T cd08282 178 DTVAVFGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAI 223 (375)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCe
Confidence 3444456688888888888888875444332 246667777778874
No 470
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.66 E-value=1.7e+02 Score=28.47 Aligned_cols=50 Identities=18% Similarity=0.046 Sum_probs=36.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHHcCCEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA--PKCKVENVVRYGGQVI 126 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~~~~~~Ga~v~ 126 (329)
+.++....|..|.++|.+.+..|..++++=..+. .....+.++..|.+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVR 68 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEE
Confidence 4677778899999999999999998777643332 2233456777787665
No 471
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=33.65 E-value=1.9e+02 Score=27.14 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=30.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+-... .-.|++|.-.-..-...++.+|++++.++-
T Consensus 96 ~~i~~t~G~~~al~~~~~~l~~~-gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 96 DDVVLCSGCSHAIEMCIAALANA-GQNILVPRPGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred HHEEECcChHHHHHHHHHHhCCC-CCEEEEeCCCChhHHHHHHHcCCEEEEeec
Confidence 34666666677665555433211 123455544334446678889999987753
No 472
>PRK07775 short chain dehydrogenase; Provisional
Probab=33.63 E-value=3e+02 Score=24.14 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=41.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
+..+|+..+|.-|.+++......|.+++++...... ..-...++..|.++..+..| .+...+..++..+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE 83 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345778888999999999988889977665532211 11223355567787765544 3344444444433
No 473
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.57 E-value=2.3e+02 Score=24.57 Aligned_cols=70 Identities=21% Similarity=0.162 Sum_probs=42.4
Q ss_pred CCeEEEECC--chHHHHHHHHHHHcCCCEEEEEc----CCC----CH----HHHHHHHHcCCEEEEECCC---HHHHHHH
Q 020236 76 IKGVVTHSS--GNHAAALSLAAKLRGIPAYIVIP----KNA----PK----CKVENVVRYGGQVIWSEAT---MHSRESV 138 (329)
Q Consensus 76 ~~~vv~~ss--GN~g~a~A~~a~~~G~~~~i~~p----~~~----~~----~~~~~~~~~Ga~v~~~~~~---~~~~~~~ 138 (329)
+..+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.++..+..| .++..+.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 345666655 48999999998889998777531 110 11 1234466778888766553 4444555
Q ss_pred HHHHHHH
Q 020236 139 ASKVLEE 145 (329)
Q Consensus 139 a~~~~~~ 145 (329)
..+..++
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12859 87 LNKVTEQ 93 (256)
T ss_pred HHHHHHH
Confidence 5555544
No 474
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=33.55 E-value=1.4e+02 Score=26.88 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=31.1
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 126 (329)
.+|...+|..|.+++..|+.+|.++++... ++.+.+.++.+|++-+
T Consensus 150 vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 195 (326)
T cd08289 150 VLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEV 195 (326)
T ss_pred EEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 344455688888888889988987554432 2456677777887433
No 475
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=33.47 E-value=1.7e+02 Score=24.59 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=34.3
Q ss_pred ccCCe-EEEECCchHHH-HHHHHHHHcCCCEEEEEcCCCC------HHHHHHHHHcCCEEE
Q 020236 74 QAIKG-VVTHSSGNHAA-ALSLAAKLRGIPAYIVIPKNAP------KCKVENVVRYGGQVI 126 (329)
Q Consensus 74 ~~~~~-vv~~ssGN~g~-a~A~~a~~~G~~~~i~~p~~~~------~~~~~~~~~~Ga~v~ 126 (329)
.+.++ +++.-..|.+. +.+.-+..+|++++++.....+ ..-++.|+..|++|+
T Consensus 136 ~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 136 RGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred CCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 34444 55666777774 5566688899998888764322 233666777788763
No 476
>PRK06172 short chain dehydrogenase; Provisional
Probab=33.27 E-value=2.4e+02 Score=24.24 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=45.5
Q ss_pred CEEEEEcC--CCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcC-CEee-CCCCCcccccccCcchHHHHhhCCC
Q 020236 101 PAYIVIPK--NAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG-AVLV-HPYNDGRIISGQGTISLEFLEQVPL 176 (329)
Q Consensus 101 ~~~i~~p~--~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~n~~~~~g~~t~~~Ei~~ql~~ 176 (329)
+.++++-. ..-..-.+.+...|++|+.+..+.+...+...++.+... ..++ -...++. .......++.+++++
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDA---EVKALVEQTIAAYGR 84 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHH---HHHHHHHHHHHHhCC
Confidence 34455532 234455667777899999998776554444444433221 1111 1122221 122333455666678
Q ss_pred CCEEEEeCCC
Q 020236 177 LDTIIVPISG 186 (329)
Q Consensus 177 ~d~vv~~~Gt 186 (329)
+|.+|...|.
T Consensus 85 id~li~~ag~ 94 (253)
T PRK06172 85 LDYAFNNAGI 94 (253)
T ss_pred CCEEEECCCC
Confidence 9999998875
No 477
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=33.25 E-value=62 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=25.0
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
|++-.+|..|.+.|..|+..|.+|+++-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 6777899999999999999999988887543
No 478
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=33.24 E-value=2e+02 Score=26.77 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=45.4
Q ss_pred hhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHH----HHHHHHHcCCEEEEECCC-HHH
Q 020236 60 FRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC----KVENVVRYGGQVIWSEAT-MHS 134 (329)
Q Consensus 60 dR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~----~~~~~~~~Ga~v~~~~~~-~~~ 134 (329)
.+.....+... .+.. ..+..++|-.+..++.. .+.-.-.|+++...-.. -...++.+|++++.++.. .++
T Consensus 54 ~~~le~~la~l--~g~~-~~~~~~sG~~ai~~~~~--ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 128 (366)
T PRK08247 54 RGVLEQAIADL--EGGD-QGFACSSGMAAIQLVMS--LFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKA 128 (366)
T ss_pred HHHHHHHHHHH--hCCC-cEEEEcCHHHHHHHHHH--HhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHH
Confidence 44445555443 2233 34666778777776543 33322344455432221 133456799999999863 322
Q ss_pred HHHHHHHHHHHcCCEeeCCCCCc
Q 020236 135 RESVASKVLEETGAVLVHPYNDG 157 (329)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~n~ 157 (329)
.. +.+..+....|+..-+||
T Consensus 129 l~---~~i~~~tklv~le~P~NP 148 (366)
T PRK08247 129 IE---QAITPNTKAIFIETPTNP 148 (366)
T ss_pred HH---HhcccCceEEEEECCCCC
Confidence 22 222223456666444566
No 479
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=33.16 E-value=1.9e+02 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=28.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
.|+....|..|.+++..|+.+|.+.+++. ..++.|....+.+|++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGAD 210 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcc
Confidence 33334457788888888888887544444 2345666666777764
No 480
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=33.16 E-value=2.3e+02 Score=25.22 Aligned_cols=47 Identities=21% Similarity=0.061 Sum_probs=35.4
Q ss_pred hhHHHHHhcCchhc----cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 61 RGASNAVLSLDEDQ----AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 61 R~a~~~l~~a~~~~----~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
|+..+.+..+.+.. ...+++.-..||-|..+|.....+|.+++.+..
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 56666665554332 346799999999999999999999988886654
No 481
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=33.16 E-value=2.5e+02 Score=25.46 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=39.5
Q ss_pred hhcC-CeEEEEecCCCCCCccchh-hHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC
Q 020236 39 SMSG-RSLFFKCECFQKGGAFKFR-GASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109 (329)
Q Consensus 39 ~~~g-~~i~~K~E~~nptGS~KdR-~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~ 109 (329)
+..| ++-.++ ++-.-.|-+=|- |....+.........+.++.-.+|-.++|++++....|++-+.++-++
T Consensus 86 ~~iGAVNTv~~-~~g~l~G~NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 86 KLVGAINTIVN-DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred HHhCceeEEEc-cCCEEEEEecCHHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3456 454433 222233544443 333444322111123467777788889999999888999777666554
No 482
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=33.12 E-value=72 Score=29.99 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=64.4
Q ss_pred hhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcC---------------CCCH-----HHHHHHHHcC-CEEEEECC
Q 020236 72 EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPK---------------NAPK-----CKVENVVRYG-GQVIWSEA 130 (329)
Q Consensus 72 ~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~---------------~~~~-----~~~~~~~~~G-a~v~~~~~ 130 (329)
.+.+.+.|+-+.++..=.++.=.-.+. +..++.|. .+|. .-.-+++.+| .++..++.
T Consensus 65 ~~d~V~~ifGc~TSasRKaVlPvvE~~--~~LL~Yp~~YEG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGS 142 (363)
T PF13433_consen 65 REDGVRAIFGCYTSASRKAVLPVVERH--NALLFYPTQYEGFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGS 142 (363)
T ss_dssp HHS---EEEE--SHHHHHHHHHHHHHC--T-EEEE-S--------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEE
T ss_pred HhCCccEEEecchhhhHHHHHHHHHhc--CceEEeccccccccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEecC
Confidence 444667788777776666665554433 23444442 1111 2233568899 99999998
Q ss_pred CH---HHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhC
Q 020236 131 TM---HSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIK 201 (329)
Q Consensus 131 ~~---~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~ 201 (329)
|| .+.-+.++++.++.|.-.+.. .+...|. +-..+|+++.+ +||.|+..+.+ .+...+++.+++.+
T Consensus 143 dYv~pre~Nri~r~~l~~~GgevvgE---~Y~plg~-td~~~ii~~I~~~~Pd~V~stlvG-~s~~aF~r~~~~aG 213 (363)
T PF13433_consen 143 DYVYPRESNRIIRDLLEARGGEVVGE---RYLPLGA-TDFDPIIAEIKAAKPDFVFSTLVG-DSNVAFYRAYAAAG 213 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-EEEEE---EEE-S-H-HHHHHHHHHHHHHT-SEEEEE--T-TCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHcCCEEEEE---EEecCCc-hhHHHHHHHHHhhCCCEEEEeCcC-CcHHHHHHHHHHcC
Confidence 74 456667888877765433321 1122233 33345555554 79977766554 55667888888875
No 483
>PRK12743 oxidoreductase; Provisional
Probab=33.09 E-value=1.5e+02 Score=25.70 Aligned_cols=75 Identities=7% Similarity=-0.014 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCC
Q 020236 112 KCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGG 187 (329)
Q Consensus 112 ~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtG 187 (329)
..-.+.+...|++|+.+.. +.+...+...++......+...+.| ............++.++++.+|.+|...|.+
T Consensus 16 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (256)
T PRK12743 16 KACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLD-LSDLPEGAQALDKLIQRLGRIDVLVNNAGAM 91 (256)
T ss_pred HHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4556667778999987743 3333333344443322222221211 1122333344567777888899999998764
No 484
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=33.04 E-value=2.2e+02 Score=25.48 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=28.6
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ 124 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~ 124 (329)
.+|...+|..|.+++..++.+|.+++++.. ++.+.+.++.+|++
T Consensus 166 vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~ 209 (332)
T cd08259 166 VLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGAD 209 (332)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 355566788888888888888887665543 23445555666654
No 485
>PRK07568 aspartate aminotransferase; Provisional
Probab=33.03 E-value=1.5e+02 Score=27.72 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=38.4
Q ss_pred CCccchhhHHHHHhcCc-hhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 55 GGAFKFRGASNAVLSLD-EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 55 tGS~KdR~a~~~l~~a~-~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
.|.-..|-+..-..... .......|+..++|..+..++..+- ..-.-.|++|......-....+.+|++++.++.
T Consensus 66 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~ 141 (397)
T PRK07568 66 QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAI-CDPGDEILVPEPFYANYNGFATSAGVKIVPVTT 141 (397)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHh-cCCCCEEEEecCCCccHHHHHHHcCCEEEEeec
Confidence 36655665543322100 0012345777777777766655432 222223444443222334456788999998864
No 486
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=32.94 E-value=1.2e+02 Score=26.33 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC--EEEEEcC
Q 020236 55 GGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP--AYIVIPK 108 (329)
Q Consensus 55 tGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~--~~i~~p~ 108 (329)
|+|.=.-+....++........+.++...+|..|+++|......|++ -+.++.+
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr 59 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDS 59 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeC
Confidence 34433334444443221122346788999999999999999888887 4444433
No 487
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=32.87 E-value=2e+02 Score=26.71 Aligned_cols=52 Identities=25% Similarity=0.382 Sum_probs=32.9
Q ss_pred eEEEECCc--hHHHHHHHHHHHcCCCEEEEEcCCC-C-HHHHH----HHHHcCCEEEEEC
Q 020236 78 GVVTHSSG--NHAAALSLAAKLRGIPAYIVIPKNA-P-KCKVE----NVVRYGGQVIWSE 129 (329)
Q Consensus 78 ~vv~~ssG--N~g~a~A~~a~~~G~~~~i~~p~~~-~-~~~~~----~~~~~Ga~v~~~~ 129 (329)
+|.....+ |.+.++..+++++|++++++.|+.. + +..++ ..+..|+++...+
T Consensus 158 ~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 158 TLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444442 7888888888889998888888763 2 22222 2344677766543
No 488
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.79 E-value=3.2e+02 Score=23.53 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=58.5
Q ss_pred hHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH---HHHHHHHHcCC-EEEEECCCHHHHHH
Q 020236 62 GASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK---CKVENVVRYGG-QVIWSEATMHSRES 137 (329)
Q Consensus 62 ~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~~~~ 137 (329)
...-|+..+ +-.....|.+-.+|. |...|..|+..| .|+.=+..++ .-.+.++.+|- +|...-+|-.
T Consensus 60 ~vA~m~~~L-~~~~g~~VLEIGtGs-GY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~---- 130 (209)
T COG2518 60 MVARMLQLL-ELKPGDRVLEIGTGS-GYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS---- 130 (209)
T ss_pred HHHHHHHHh-CCCCCCeEEEECCCc-hHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc----
Confidence 344444443 222446676654442 333455555555 3333233222 23445777777 3444433211
Q ss_pred HHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCCh
Q 020236 138 VASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGG 188 (329)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg 188 (329)
.||---.|||-.....+..++=.-+++||+.--.+++|+|++.
T Consensus 131 --------~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG~~~ 173 (209)
T COG2518 131 --------KGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGP 173 (209)
T ss_pred --------cCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEccCC
Confidence 1333335666555555565665668899987788999998443
No 489
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.77 E-value=3.1e+02 Score=23.34 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=40.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHH
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLE 144 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~ 144 (329)
+..+|+.++|.-|.++|..-...|.++++...... .........++.++..+..| .++..+..++..+
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE-DAAEALADELGDRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35688889999999999998888998776554332 11122233345555544433 3344444444433
No 490
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=32.63 E-value=4e+02 Score=24.48 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=30.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 130 (329)
..|+..+++..+..++..+- .+-.-.|++|.-.-..-....+..|++++.++-
T Consensus 77 ~~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 129 (351)
T PRK14807 77 TNIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKL 129 (351)
T ss_pred ccEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeec
Confidence 45666665566655544432 222234555544334455567889999998864
No 491
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=32.62 E-value=2.1e+02 Score=26.68 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=32.6
Q ss_pred eEEEECCc--hHHHHHHHHHHHcCCCEEEEEcCCC-CH-HHH----HHHHHcCCEEEEEC
Q 020236 78 GVVTHSSG--NHAAALSLAAKLRGIPAYIVIPKNA-PK-CKV----ENVVRYGGQVIWSE 129 (329)
Q Consensus 78 ~vv~~ssG--N~g~a~A~~a~~~G~~~~i~~p~~~-~~-~~~----~~~~~~Ga~v~~~~ 129 (329)
+|.....+ |.+.|+..+++++|+.++++.|+.. ++ ..+ +..+..|.++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444433 6788888888888888888888762 22 222 22344677766554
No 492
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=32.57 E-value=1.6e+02 Score=26.44 Aligned_cols=27 Identities=33% Similarity=0.285 Sum_probs=19.8
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEE
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIV 105 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~ 105 (329)
+|...+|..|.+++..|+.+|.+++++
T Consensus 167 lI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 167 VVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred EEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 444456888888888888888876554
No 493
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=32.52 E-value=2.4e+02 Score=24.54 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=24.4
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
.+|+..+|.-|.+++......|.++++...
T Consensus 4 ~lITGas~gIG~~~a~~l~~~G~~V~~~~~ 33 (267)
T TIGR02685 4 AVVTGAAKRIGSSIAVALHQEGYRVVLHYH 33 (267)
T ss_pred EEEeCCCCcHHHHHHHHHHhCCCeEEEEcC
Confidence 477788889999999998889998776643
No 494
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.48 E-value=3.3e+02 Score=23.46 Aligned_cols=69 Identities=22% Similarity=0.145 Sum_probs=40.8
Q ss_pred CeEEEECC--chHHHHHHHHHHHcCCCEEEEEcCCC---------CHH---HHHHHHHcCCEEEEECCC---HHHHHHHH
Q 020236 77 KGVVTHSS--GNHAAALSLAAKLRGIPAYIVIPKNA---------PKC---KVENVVRYGGQVIWSEAT---MHSRESVA 139 (329)
Q Consensus 77 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~i~~p~~~---------~~~---~~~~~~~~Ga~v~~~~~~---~~~~~~~a 139 (329)
..+|+..+ |.-|.++|..-...|..++++..... ... ....+...|.+++.+..| .++..+..
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 86 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRVF 86 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 34666555 47999999888888998777654310 111 223455567777777654 33444445
Q ss_pred HHHHHH
Q 020236 140 SKVLEE 145 (329)
Q Consensus 140 ~~~~~~ 145 (329)
.+..++
T Consensus 87 ~~~~~~ 92 (256)
T PRK12748 87 YAVSER 92 (256)
T ss_pred HHHHHh
Confidence 555444
No 495
>PRK06841 short chain dehydrogenase; Provisional
Probab=32.44 E-value=2.9e+02 Score=23.65 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=25.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEc
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p 107 (329)
..-+|+..+|--|.++|......|.+++++..
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 35677888899999999998889998666544
No 496
>PRK06202 hypothetical protein; Provisional
Probab=32.34 E-value=65 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=28.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236 177 LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA 214 (329)
Q Consensus 177 ~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~ 214 (329)
...+=+++|+|....-+...++..++..+++|+++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 34666888888877666666666677789999998764
No 497
>PRK07890 short chain dehydrogenase; Provisional
Probab=32.31 E-value=1.5e+02 Score=25.62 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=36.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC
Q 020236 76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT 131 (329)
Q Consensus 76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 131 (329)
+..+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+..|
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTD 62 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecC
Confidence 456888899999999999988899977666432111 11223344456666555443
No 498
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=32.20 E-value=3.3e+02 Score=24.21 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=22.0
Q ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCC
Q 020236 79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123 (329)
Q Consensus 79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga 123 (329)
+|...+|..|.+++..|+.+|.+++.+.+ ++.+.+.++.+|+
T Consensus 147 lI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~ 188 (324)
T cd08244 147 LVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGA 188 (324)
T ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCC
Confidence 44444667777777777777766433322 1223344444554
No 499
>PLN02397 aspartate transaminase
Probab=32.20 E-value=1.7e+02 Score=27.97 Aligned_cols=27 Identities=19% Similarity=-0.039 Sum_probs=20.1
Q ss_pred EEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236 103 YIVIPKNAPKCKVENVVRYGGQVIWSE 129 (329)
Q Consensus 103 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 129 (329)
.|++|+-.-..-...++..|++++.++
T Consensus 144 ~Vlv~~P~y~~y~~~~~~~g~~~~~v~ 170 (423)
T PLN02397 144 TIYIPNPTWGNHHNIFRDAGVPVRTYR 170 (423)
T ss_pred EEEEeCCCchhHHHHHHHcCCeEEEee
Confidence 466666555566788889999999875
No 500
>PRK08363 alanine aminotransferase; Validated
Probab=32.18 E-value=1.7e+02 Score=27.50 Aligned_cols=51 Identities=22% Similarity=0.101 Sum_probs=30.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236 77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS 128 (329)
Q Consensus 77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 128 (329)
..|+..+++..|..++..+- .+-.-.|++|...-..-...++.+|++++.+
T Consensus 94 ~~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~ 144 (398)
T PRK08363 94 DDVRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPPYTGLVKFYGGVPVEY 144 (398)
T ss_pred hhEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHHcCCEEEEe
Confidence 34666666677766665443 2222345555544444456777889988776
Done!