Query 020237
Match_columns 329
No_of_seqs 133 out of 289
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d7l_A WD repeat and HMG-box D 98.8 4.7E-09 1.6E-13 80.8 4.6 62 28-89 2-63 (81)
2 2eqz_A High mobility group pro 98.8 2.9E-09 1E-13 82.4 3.3 67 27-93 11-78 (86)
3 1aab_A High mobility group pro 98.7 2.4E-09 8.2E-14 82.3 1.5 67 27-93 3-70 (83)
4 2cs1_A PMS1 protein homolog 1; 98.7 9.9E-09 3.4E-13 80.5 4.0 67 26-93 2-68 (92)
5 2crj_A SWI/SNF-related matrix- 98.7 8.1E-09 2.8E-13 81.0 3.4 67 26-93 2-68 (92)
6 1hry_A Human SRY; DNA, DNA-bin 98.7 8.7E-09 3E-13 77.7 2.8 65 28-93 1-65 (76)
7 1hme_A High mobility group pro 98.6 9.4E-09 3.2E-13 77.7 2.5 66 27-93 2-67 (77)
8 1wgf_A Upstream binding factor 98.6 1.7E-08 5.7E-13 78.9 3.7 69 26-95 15-83 (90)
9 1l8y_A Upstream binding factor 98.6 1.1E-08 3.7E-13 80.4 2.6 63 30-94 3-65 (91)
10 1ckt_A High mobility group 1 p 98.6 1.3E-08 4.3E-13 75.7 2.6 63 31-93 1-64 (71)
11 1wz6_A HMG-box transcription f 98.6 2.3E-08 7.8E-13 76.5 3.8 69 26-95 2-70 (82)
12 4a3n_A Transcription factor SO 98.6 1.1E-08 3.6E-13 76.0 1.9 63 30-93 1-63 (71)
13 2co9_A Thymus high mobility gr 98.6 2.5E-08 8.5E-13 79.7 3.9 66 27-93 13-78 (102)
14 3fgh_A Transcription factor A, 98.6 1.4E-08 4.6E-13 74.9 1.6 59 30-93 1-59 (67)
15 1k99_A Upstream binding factor 98.6 1.7E-08 5.9E-13 80.3 2.1 65 27-92 6-70 (99)
16 2e6o_A HMG box-containing prot 98.5 1.9E-08 6.6E-13 78.0 2.1 66 26-92 12-77 (87)
17 1i11_A Transcription factor SO 98.5 4.3E-08 1.5E-12 74.8 3.6 65 29-94 2-66 (81)
18 1j46_A SRY, sex-determining re 98.5 4.9E-08 1.7E-12 75.3 3.9 64 29-93 2-65 (85)
19 3f27_D Transcription factor SO 98.5 3.6E-08 1.2E-12 75.5 2.2 65 28-93 3-67 (83)
20 2lhj_A High mobility group pro 98.5 3.1E-08 1.1E-12 78.3 1.3 68 26-93 17-85 (97)
21 1gt0_D Transcription factor SO 98.5 9.1E-08 3.1E-12 72.8 3.6 63 30-93 1-63 (80)
22 2lef_A LEF-1 HMG, protein (lym 98.5 9.8E-08 3.3E-12 73.7 3.8 63 30-93 1-63 (86)
23 4euw_A Transcription factor SO 98.4 1.2E-07 4E-12 76.4 3.8 73 21-94 19-91 (106)
24 1cg7_A Protein (NON histone pr 98.4 2.1E-08 7.3E-13 78.7 -1.0 67 26-93 15-81 (93)
25 3u2b_C Transcription factor SO 98.4 9.7E-08 3.3E-12 72.3 2.4 63 30-93 1-63 (79)
26 1wxl_A Single-strand recogniti 98.4 1.5E-07 5E-12 70.5 2.8 63 29-94 1-63 (73)
27 1v63_A Nucleolar transcription 98.4 4.1E-07 1.4E-11 72.6 5.6 83 27-125 4-88 (101)
28 1v64_A Nucleolar transcription 98.3 2.8E-07 9.6E-12 74.5 4.0 81 27-123 12-93 (108)
29 2cto_A Novel protein; high mob 98.3 7.1E-08 2.4E-12 76.1 0.3 67 26-95 5-74 (93)
30 3nm9_A HMG-D, high mobility gr 98.3 1.5E-07 5.2E-12 70.4 2.0 61 30-93 2-62 (73)
31 2yrq_A High mobility group pro 98.2 4.1E-07 1.4E-11 79.0 2.9 67 27-93 11-78 (173)
32 2gzk_A Sex-determining region 98.2 4.4E-07 1.5E-11 77.6 2.7 66 27-93 84-149 (159)
33 3tq6_A Transcription factor A, 98.2 6.6E-07 2.2E-11 80.6 3.5 85 26-122 4-88 (214)
34 3tmm_A Transcription factor A, 98.2 8.8E-07 3E-11 81.0 3.8 84 26-121 36-119 (238)
35 2yrq_A High mobility group pro 98.1 8.4E-07 2.9E-11 77.0 2.6 66 27-93 97-162 (173)
36 2yuk_A Myeloid/lymphoid or mix 98.1 1.6E-07 5.4E-12 73.7 -3.0 62 28-93 19-81 (90)
37 3tq6_A Transcription factor A, 97.8 1.2E-06 4.3E-11 78.8 -1.6 62 27-93 110-171 (214)
38 3tmm_A Transcription factor A, 97.7 2.1E-06 7.1E-11 78.5 -2.1 62 27-93 142-203 (238)
39 2gzk_A Sex-determining region 97.6 1.9E-05 6.4E-10 67.4 2.5 63 29-92 2-64 (159)
40 2w9y_A CE-FAR-7, fatty acid/re 36.2 31 0.0011 28.6 3.7 81 44-125 49-133 (140)
No 1
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.7e-09 Score=80.81 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=58.0
Q ss_pred CCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhc
Q 020237 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRV 89 (329)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~ 89 (329)
++|.+||+.++|+.|+.+.+.++++.||....+.++.|.+|..|++||++||.+|...|+..
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998876889999999999999999999999988874
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.9e-09 Score=82.45 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=60.6
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccc-cHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACI-TKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.||+.++||.++|+.|+.+.+.++++.+|...+ ..++.|.+|..|++||++||.+|...|...-..|
T Consensus 11 kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 78 (86)
T 2eqz_A 11 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRY 78 (86)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998875 7899999999999999999999999888744444
No 3
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.73 E-value=2.4e-09 Score=82.27 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccc-cHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACI-TKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.||+.++|+.++|+.|+.+.+.++++.+|...+ ..++.|.+|..|++||++||.+|...|...-..|
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 70 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY 70 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998875 7899999999999999999999999888754444
No 4
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=9.9e-09 Score=80.46 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=60.6
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
+.+++.+||+.++|+.|+.+.+.++++.+|... +.++.|.+|..|++||++||.+|...|...-..|
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y 68 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 68 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999864 6799999999999999999999999888755555
No 5
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.68 E-value=8.1e-09 Score=80.96 Aligned_cols=67 Identities=27% Similarity=0.417 Sum_probs=60.2
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
+.||+.++||.++|+.|+.+.+.++++.+|... +.++.|.+|..|++||++||.+|...|...-..|
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y 68 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQY 68 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999854 7899999999999999999999998888744444
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.66 E-value=8.7e-09 Score=77.65 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=56.7
Q ss_pred CCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
|++.++|+.++|+.|..+.+.++++.+|+. .+.++.|.+|..|++||++||.++...|...-..|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 65 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999975 46789999999999999999999999888754444
No 7
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.64 E-value=9.4e-09 Score=77.66 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=59.0
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.||+.++||.++|+.|+.+.+.++++.+|.. .+.++.+.+|..|++||++||.+|...|...-..|
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 67 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 67 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999974 57899999999999999999999999888754444
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.63 E-value=1.7e-08 Score=78.92 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccccC
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~~ 95 (329)
-.|++.++||.++|+.|+.+.+.++++.+|. ..+.++.|.+|..|++||++||.+|...|...-..|..
T Consensus 15 ~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~ 83 (90)
T 1wgf_A 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSER 83 (90)
T ss_dssp SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999998 45789999999999999999999999999987777754
No 9
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=98.63 E-value=1.1e-08 Score=80.40 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=56.9
Q ss_pred CCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhcccccc
Q 020237 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~ 94 (329)
+.|+||+++|+.|+++|++.|++.+|+ ...++.|.+|..|++||.+||.+|...|...-..|.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYe 65 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYE 65 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999998 679999999999999999999999988887655553
No 10
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=98.61 E-value=1.3e-08 Score=75.68 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=56.3
Q ss_pred CCcccccchhhhhHHHHHHHHhhCCCccc-cHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 31 RKRQCRNGFIRYFGEVVRQIKANDGMACI-TKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
+||||.++|+.|+.+.+.++++.+|...+ ..++.|.+|..|++||++||.++...|+..-..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 64 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY 64 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999998774 6899999999999999999999998887744443
No 11
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.60 E-value=2.3e-08 Score=76.54 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccccC
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~~ 95 (329)
+.|++.++|+.++|+.|..+.+.++++.+|.. .+.++.|.+|..|++||++||.+|...|...-..|..
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~ 70 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMK 70 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999974 5679999999999999999999999998886666643
No 12
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=98.60 E-value=1.1e-08 Score=75.95 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=54.0
Q ss_pred CCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
|+++||.++|+.|..+++.++++.+|... ..++.|.+|..|++||++||.+|...|...-..|
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 63 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH 63 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999876 7899999999999999999999999888755554
No 13
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.59 E-value=2.5e-08 Score=79.74 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=59.6
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.|++.++||.++|+.|+.+.+.++++.+|.. .+.++.|.+|..|++||++||.+|...|...-..|
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y 78 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEY 78 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999986 47899999999999999999999999888754444
No 14
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=98.57 E-value=1.4e-08 Score=74.86 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=53.1
Q ss_pred CCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
|+||||.++|+.|+.+.+.++++.+| .++.|.+|..|++||++||.+|...|...-..|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y 59 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRY 59 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999998877 599999999999999999999998888754444
No 15
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.56 E-value=1.7e-08 Score=80.32 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=59.4
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhcccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKS 92 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~ 92 (329)
.|++.++||.++|+.|+.+.+.++++.+|+. .+.++.|.+|..|++||++||.+|...|...-..
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~ 70 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 70 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999986 4789999999999999999999999988875555
No 16
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.55 E-value=1.9e-08 Score=77.98 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=58.7
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhcccc
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKS 92 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~ 92 (329)
..|++.++||.++||.|+.+.+.++++.+|.. .+.++.|.+|..|++||++||.+|...|...-..
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~ 77 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEE 77 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999974 5779999999999999999999999988774433
No 17
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.53 E-value=4.3e-08 Score=74.81 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=56.8
Q ss_pred CCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhcccccc
Q 020237 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (329)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~ 94 (329)
++.++||.++|+.|..+.+.++++.+|+.. +.++.|.+|..|++||++||.+|...|...-..|.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~ 66 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHL 66 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999764 78999999999999999999999888777555543
No 18
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=98.53 E-value=4.9e-08 Score=75.32 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=57.8
Q ss_pred CCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
|+.++||.++|+.|+.+.+.++++.+|+. .+.++.|.+|..|++||++||.+|...|...-..|
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y 65 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999975 57799999999999999999999999888755444
No 19
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=98.49 E-value=3.6e-08 Score=75.49 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=55.9
Q ss_pred CCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.++.++||+++||.|..+.+.++++.+|+.. ..++.|.+|..|++||++||.+|...|...-..|
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 67 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH 67 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999866 7899999999999999999999999888755554
No 20
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=98.46 E-value=3.1e-08 Score=78.34 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCcc-ccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMAC-ITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
-.|++.++||.++|+.|+.+.+.++++.+|... .+.++.|.+|..|++||++||.+|...|...-..|
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y 85 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRY 85 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999764 47899999999999999999999988887744444
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=98.46 E-value=9.1e-08 Score=72.76 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=56.2
Q ss_pred CCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
+.++||.++|+.|..+.+.++++.+|.. .+.++.+.+|..|++||++||.+|...|...-..|
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y 63 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 63 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999975 47899999999999999999999999888754444
No 22
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.45 E-value=9.8e-08 Score=73.70 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=56.6
Q ss_pred CCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
|.++||.++|+.|+.+.+.++++.+|+. .+.++.+.+|..|++||++||.+|...|...-..|
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y 63 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLH 63 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999985 57899999999999999999999998888754444
No 23
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=98.43 E-value=1.2e-07 Score=76.37 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=57.9
Q ss_pred eeccCCCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhcccccc
Q 020237 21 VGVDASNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (329)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~ 94 (329)
+.....-|++.++||+++|+.|..+.++++++.+|... +.++.|.+|..|++||++||.+|...|...-..|.
T Consensus 19 ~~~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 91 (106)
T 4euw_A 19 LYFQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHK 91 (106)
T ss_dssp ---------CCCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33445667899999999999999999999999999754 57999999999999999999999998887655553
No 24
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=98.40 E-value=2.1e-08 Score=78.74 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=60.0
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
-.|++.++||.++|+.|+.+.+.++++.+|... +.++.|.+|..|++||++||.+|...|...-..|
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y 81 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRY 81 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSC-HHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999865 7899999999999999999999999888755555
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=98.39 E-value=9.7e-08 Score=72.29 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=56.4
Q ss_pred CCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
|..+||+++|+.|..+.+.++++.+|+.. +.++.|.+|..|++||++||.+|...|...-..|
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 63 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKH 63 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999764 6799999999999999999999999888755444
No 26
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=98.37 E-value=1.5e-07 Score=70.46 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=56.0
Q ss_pred CCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhcccccc
Q 020237 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (329)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~ 94 (329)
||.++||.++|+.|+.+.+.++++.+|... +.++.|.+|..|++| +||.+|...|...-..|.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~ 63 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIK-VTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYH 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCC-HHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999854 689999999999999 889999988887555553
No 27
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.37 E-value=4.1e-07 Score=72.61 Aligned_cols=83 Identities=25% Similarity=0.344 Sum_probs=65.5
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCcc--ccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccccCCCCcccccC
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMAC--ITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCA 104 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~~k~~l~tRcS 104 (329)
-.++.+|||.++|+.|+.+++. +|+.. ...++.|.+|..|++||++||.+|...|...-..|.
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~-----~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~---------- 68 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS-----NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYK---------- 68 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH-----HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH----------
T ss_pred CCCCCCCCCCCHHHHHHHHHHh-----CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH----------
Confidence 3456799999999999999753 55543 357999999999999999999999999988666663
Q ss_pred HHHHHHHHHhCCHHHHHHHHH
Q 020237 105 PDRLAAAVLQLTDEQRVVVRE 125 (329)
Q Consensus 105 p~~~~~~i~~Ls~~qk~~I~~ 125 (329)
..+......++++++..+.+
T Consensus 69 -~e~~~Y~~~~~~~~~~~~~~ 88 (101)
T 1v63_A 69 -VHLDLWVKSLSPQDRAAYKE 88 (101)
T ss_dssp -HHHHHHHHHSCTTHHHHHHH
T ss_pred -HHHHHHHhhCCHHHHHHHHH
Confidence 34455567888888876654
No 28
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.34 E-value=2.8e-07 Score=74.47 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCCCC-cccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccccCCCCcccccCH
Q 020237 27 NDGGRK-RQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCAP 105 (329)
Q Consensus 27 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~~k~~l~tRcSp 105 (329)
.|+|+| |||.++|+.|+.+.+.+++ ...+.++.|.+|..|++||++||.+|...|...-..|.
T Consensus 12 kd~~~P~KrP~say~lF~~e~r~~~k-----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~----------- 75 (108)
T 1v64_A 12 KFDGRPTKPPPNSYSLYCAELMANMK-----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYE----------- 75 (108)
T ss_dssp CTTTSCCCCCSSHHHHHHHHHHHHCT-----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-----------
Confidence 478889 9999999999999999988 35678999999999999999999999999988666663
Q ss_pred HHHHHHHHhCCHHHHHHH
Q 020237 106 DRLAAAVLQLTDEQRVVV 123 (329)
Q Consensus 106 ~~~~~~i~~Ls~~qk~~I 123 (329)
..+......+++++++.+
T Consensus 76 ~e~~~Y~~~~~~~~r~~~ 93 (108)
T 1v64_A 76 VELLRFLESLPEEEQQRV 93 (108)
T ss_dssp HHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHH
Confidence 344555568888888765
No 29
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=7.1e-08 Score=76.12 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHh---cCCCCCCChhhhhhhhhhhhhccccccC
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEI---GSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~~~~~sls~~ek~~~~~~~~~~~~~~~~ 95 (329)
+.+++++||++++|+.|+.++++++++. ...+.++.|.+ |..|++||++||.+|...|...-..|.+
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e---~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~k 74 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR---GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGK 74 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH---TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 5677899999999999999999999987 45678899999 9999999999999999998876666655
No 30
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.32 E-value=1.5e-07 Score=70.39 Aligned_cols=61 Identities=11% Similarity=0.241 Sum_probs=54.0
Q ss_pred CCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
+.||||+++|+.|+.+.+.++++.+|+.. +.++.|.+|..|++||+ |.+|...|...-..|
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y 62 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDY 62 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHH
Confidence 57999999999999999999999999875 68999999999999997 888888887754444
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=4.1e-07 Score=79.00 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=60.2
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCc-cccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMA-CITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.|++.++|+.++|+.|+.+.+.++++.+|.. ..+.++.|.+|..|++||++||.+|...|...-..|
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 78 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY 78 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999987 468899999999999999999999998887744444
No 32
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.21 E-value=4.4e-07 Score=77.62 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=58.9
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.|++.++||+++|+.|+.+.+.++++.+|+. .+.++.|.+|..|++||++||.+|...|...-..|
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 149 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 149 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999984 57899999999999999999999998887744444
No 33
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=98.19 E-value=6.6e-07 Score=80.65 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=71.2
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccccCCCCcccccCH
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCAP 105 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~~k~~l~tRcSp 105 (329)
+.+++.++||.++|+.|+.+.+.++++.+|+.. +.++.|.+|..|++||++||.+|...|+..-..|.
T Consensus 4 ~~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~----------- 71 (214)
T 3tq6_A 4 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK----------- 71 (214)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHH-----------
Confidence 445778999999999999999999999999877 89999999999999999999999998888555553
Q ss_pred HHHHHHHHhCCHHHHHH
Q 020237 106 DRLAAAVLQLTDEQRVV 122 (329)
Q Consensus 106 ~~~~~~i~~Ls~~qk~~ 122 (329)
..+......++|.|+..
T Consensus 72 ~e~~~y~~~~tp~q~~~ 88 (214)
T 3tq6_A 72 EEISRFKEQLTPSQIMS 88 (214)
T ss_dssp HHHHHHHHHCCHHHHHH
T ss_pred HHhhhhcccCCHHHHHH
Confidence 34455666778877543
No 34
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=98.17 E-value=8.8e-07 Score=81.05 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccccCCCCcccccCH
Q 020237 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCAP 105 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~~~k~~l~tRcSp 105 (329)
+.|++.++|+.++|+.|+.+.++++++.+|+.. +.++.|.+|..|++||++||.+|...|+.....|.
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~----------- 103 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK----------- 103 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-----------
Confidence 456778999999999999999999999999887 79999999999999999999999999888555553
Q ss_pred HHHHHHHHhCCHHHHH
Q 020237 106 DRLAAAVLQLTDEQRV 121 (329)
Q Consensus 106 ~~~~~~i~~Ls~~qk~ 121 (329)
..+......++|.|+.
T Consensus 104 ~e~~~y~~~~~p~~~~ 119 (238)
T 3tmm_A 104 EEISRFKEQLTPSQIM 119 (238)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHhcCCHHHHH
Confidence 3455566677887743
No 35
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=8.4e-07 Score=77.03 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=59.0
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.|++.++||+++|+.|+.+.+.++++.+|. ..+.++.|.+|..|++||++||.+|...|...-..|
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 162 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 162 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998 457899999999999999999999998887754444
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.06 E-value=1.6e-07 Score=73.69 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=51.9
Q ss_pred CCCCCcccccchhhhhHHHHHHHHhhCCCcc-ccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMAC-ITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
||+.|+|++++||.|.+++++++++.||+.. .+.++. ..|++||++||.+|..+|...-..|
T Consensus 19 DpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h 81 (90)
T 2yuk_A 19 EEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAAL 81 (90)
T ss_dssp HHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999754 234444 9999999999999998887744333
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=97.84 E-value=1.2e-06 Score=78.81 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=54.9
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.|+|.|+||+++|+.|+.+.+.++++.+|. ++.|.+|..|++||++||.+|...|...-..|
T Consensus 110 kdp~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y 171 (214)
T 3tq6_A 110 TLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRY 171 (214)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSSCSSHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccchhhhhHHHHHHhhccCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999887764 89999999999999999999999888855555
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=97.73 E-value=2.1e-06 Score=78.55 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=55.1
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhccccc
Q 020237 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~~ 93 (329)
.|+|.++||+++|+.|+.|.+.++++.+|. ++.|.+|..|++||++||.+|...|...-..|
T Consensus 142 kdp~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y 203 (238)
T 3tmm_A 142 TLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRY 203 (238)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSCCSSHH-----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999887765 89999999999999999999999888855555
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.63 E-value=1.9e-05 Score=67.36 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=55.9
Q ss_pred CCCCcccccchhhhhHHHHHHHHhhCCCccccHHHHHHhcCCCCCCChhhhhhhhhhhhhcccc
Q 020237 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKS 92 (329)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sls~~ek~~~~~~~~~~~~~ 92 (329)
+++++|+.++||.|..+.+.++++.+|. ..+.++.|.+|..|++||++||.+|...|...-..
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~ 64 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAM 64 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHH
Confidence 5689999999999999999999999998 56789999999999999999999998887764333
No 40
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=36.19 E-value=31 Score=28.57 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHHHHHHhhCCCccc-cHHHHHHhcCCCCCCChhhhhhhh---hhhhhccccccCCCCcccccCHHHHHHHHHhCCHHH
Q 020237 44 GEVVRQIKANDGMACI-TKEIRKEIGSTYKNLPPEEKCRYK---SEAKRVGKSKIGKAKFPTRCAPDRLAAAVLQLTDEQ 119 (329)
Q Consensus 44 ~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~sls~~ek~~~~---~~~~~~~~~~~~k~~l~tRcSp~~~~~~i~~Ls~~q 119 (329)
+|++..+|++.|++-. +..++..+-.+=.+|+|+.|...+ ...+..-.++..+... +.-..+.+....+.||++.
T Consensus 49 ~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Peak~Fv~kli~~~r~l~~~~~~G~k~-~~~~lK~~~~~ykaLS~~a 127 (140)
T 2w9y_A 49 GEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAAVEYAKKLIHMVTTTLCSLTVGKPI-DDADAKRLHQEFQSLSSED 127 (140)
T ss_dssp TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCC-CTHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCHHH
Confidence 5678888998885422 225666667888899999888322 2223322232223333 4444667778889999999
Q ss_pred HHHHHH
Q 020237 120 RVVVRE 125 (329)
Q Consensus 120 k~~I~~ 125 (329)
++.+++
T Consensus 128 K~dL~k 133 (140)
T 2w9y_A 128 QAALRK 133 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988875
Done!