Query 020238
Match_columns 329
No_of_seqs 205 out of 3281
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.1E-28 6.8E-33 241.0 19.6 275 10-292 157-463 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-27 4.3E-32 235.3 19.9 289 2-293 172-487 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.7E-26 3.7E-31 201.3 3.3 286 1-294 109-429 (873)
4 KOG4194 Membrane glycoprotein 99.9 2E-25 4.4E-30 194.7 4.1 287 1-291 85-402 (873)
5 PLN03210 Resistant to P. syrin 99.9 1.1E-22 2.4E-27 202.6 22.1 279 10-298 581-910 (1153)
6 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.5E-27 202.4 22.0 282 1-299 618-948 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 4.1E-26 8.9E-31 200.8 -3.0 284 2-297 63-378 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 2.5E-25 5.3E-30 186.2 -3.3 283 2-294 145-541 (565)
9 KOG0444 Cytoskeletal regulator 99.9 5.8E-25 1.2E-29 193.6 -1.4 276 1-288 110-393 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 5.2E-25 1.1E-29 184.2 -7.9 233 2-247 53-308 (565)
11 PRK15387 E3 ubiquitin-protein 99.8 7.8E-20 1.7E-24 171.1 15.2 255 1-299 208-462 (788)
12 KOG0618 Serine/threonine phosp 99.8 2E-20 4.4E-25 171.5 2.9 202 90-294 241-489 (1081)
13 PRK15370 E3 ubiquitin-protein 99.7 1.2E-17 2.6E-22 157.3 12.9 243 18-292 179-426 (754)
14 PRK15370 E3 ubiquitin-protein 99.7 1.6E-17 3.5E-22 156.4 13.4 236 1-269 185-427 (754)
15 KOG0618 Serine/threonine phosp 99.7 2.2E-19 4.9E-24 164.7 -4.0 243 16-270 218-489 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 9.5E-17 2E-21 150.6 11.2 229 1-272 229-460 (788)
17 KOG0617 Ras suppressor protein 99.7 6.4E-19 1.4E-23 131.7 -3.4 164 64-234 30-194 (264)
18 cd00116 LRR_RI Leucine-rich re 99.7 3.2E-17 6.9E-22 142.7 2.5 232 13-247 19-289 (319)
19 KOG4237 Extracellular matrix p 99.7 9.2E-18 2E-22 140.8 -1.1 294 4-306 56-371 (498)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-16 2.3E-21 139.4 4.8 238 7-247 41-318 (319)
21 KOG0617 Ras suppressor protein 99.6 6.2E-18 1.4E-22 126.4 -4.6 175 30-212 20-195 (264)
22 KOG4237 Extracellular matrix p 99.5 9E-16 1.9E-20 129.0 -6.1 241 1-248 74-358 (498)
23 KOG3207 Beta-tubulin folding c 99.4 9.1E-14 2E-18 118.5 1.4 219 7-226 111-339 (505)
24 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.2E-18 120.8 -2.9 191 66-267 74-270 (722)
25 KOG1909 Ran GTPase-activating 99.3 4.5E-13 9.8E-18 111.2 -0.5 229 39-269 26-310 (382)
26 KOG1909 Ran GTPase-activating 99.2 1.2E-12 2.6E-17 108.8 -0.1 236 11-248 24-310 (382)
27 KOG4341 F-box protein containi 99.2 3.4E-13 7.3E-18 114.4 -4.2 286 18-307 139-452 (483)
28 KOG4658 Apoptotic ATPase [Sign 99.2 1.2E-11 2.6E-16 119.0 5.3 152 15-170 521-677 (889)
29 KOG3207 Beta-tubulin folding c 99.2 4.4E-12 9.5E-17 108.4 -0.2 198 42-244 120-334 (505)
30 KOG1259 Nischarin, modulator o 99.1 2.3E-11 4.9E-16 99.5 2.1 219 39-270 178-412 (490)
31 KOG0532 Leucine-rich repeat (L 99.1 6.8E-12 1.5E-16 110.6 -2.6 206 30-246 62-270 (722)
32 COG4886 Leucine-rich repeat (L 99.1 3.3E-10 7.2E-15 101.6 7.8 175 66-249 115-290 (394)
33 COG4886 Leucine-rich repeat (L 99.0 3E-10 6.4E-15 101.9 6.5 191 71-270 97-290 (394)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.6E-15 88.7 5.2 84 136-226 41-126 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 6.6E-10 1.4E-14 86.4 6.1 124 135-268 17-151 (175)
36 KOG4658 Apoptotic ATPase [Sign 99.0 2.3E-10 4.9E-15 110.3 4.3 108 15-123 543-652 (889)
37 KOG1259 Nischarin, modulator o 99.0 9.7E-11 2.1E-15 95.9 0.8 223 13-247 178-410 (490)
38 KOG2120 SCF ubiquitin ligase, 99.0 2.4E-11 5.2E-16 99.2 -3.9 175 114-292 186-374 (419)
39 KOG4341 F-box protein containi 98.8 7.5E-11 1.6E-15 100.4 -5.7 258 11-272 158-441 (483)
40 COG5238 RNA1 Ran GTPase-activa 98.7 2.1E-09 4.6E-14 86.9 0.7 184 86-269 88-315 (388)
41 KOG2120 SCF ubiquitin ligase, 98.7 3E-10 6.5E-15 92.9 -4.9 175 90-269 185-375 (419)
42 PF13855 LRR_8: Leucine rich r 98.7 3.1E-08 6.7E-13 63.3 4.7 60 17-78 1-60 (61)
43 KOG2982 Uncharacterized conser 98.6 8.8E-09 1.9E-13 84.4 0.9 84 40-123 68-156 (418)
44 PF13855 LRR_8: Leucine rich r 98.6 5.5E-08 1.2E-12 62.2 4.1 56 191-246 2-59 (61)
45 PLN03150 hypothetical protein; 98.6 1.5E-07 3.3E-12 88.8 8.6 107 162-274 419-532 (623)
46 PRK15386 type III secretion pr 98.6 6.6E-07 1.4E-11 78.3 11.4 55 90-149 52-106 (426)
47 PLN03150 hypothetical protein; 98.5 3.1E-07 6.8E-12 86.7 8.6 104 69-172 420-526 (623)
48 KOG0531 Protein phosphatase 1, 98.5 2.2E-08 4.7E-13 90.2 0.4 195 16-226 71-268 (414)
49 KOG0531 Protein phosphatase 1, 98.5 1.9E-08 4.1E-13 90.6 -0.9 193 41-247 70-266 (414)
50 KOG1859 Leucine-rich repeat pr 98.4 2.4E-09 5.1E-14 97.5 -8.8 195 16-226 83-292 (1096)
51 KOG1859 Leucine-rich repeat pr 98.4 4.3E-09 9.3E-14 95.9 -7.5 125 114-248 165-291 (1096)
52 PRK15386 type III secretion pr 98.4 3.4E-06 7.4E-11 73.9 10.4 71 65-146 50-121 (426)
53 KOG4579 Leucine-rich repeat (L 98.3 4.6E-08 9.9E-13 71.2 -2.3 104 139-247 29-134 (177)
54 PF12799 LRR_4: Leucine Rich r 98.3 1.3E-06 2.8E-11 51.3 4.0 39 191-229 2-40 (44)
55 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.3E-11 72.4 2.1 83 90-172 71-157 (418)
56 COG5238 RNA1 Ran GTPase-activa 98.0 4.2E-06 9.1E-11 68.2 2.9 163 106-269 85-284 (388)
57 KOG3665 ZYG-1-like serine/thre 97.9 4.3E-06 9.4E-11 79.2 2.2 15 212-226 249-263 (699)
58 KOG1644 U2-associated snRNP A' 97.9 2.8E-05 6E-10 60.7 6.1 124 19-147 21-150 (233)
59 KOG1947 Leucine rich repeat pr 97.9 9.6E-07 2.1E-11 81.3 -2.4 89 209-304 358-450 (482)
60 KOG1947 Leucine rich repeat pr 97.9 2.8E-06 6E-11 78.3 0.0 236 15-271 186-441 (482)
61 KOG3665 ZYG-1-like serine/thre 97.8 7.1E-06 1.5E-10 77.8 2.0 131 43-174 122-263 (699)
62 KOG4579 Leucine-rich repeat (L 97.8 5.1E-06 1.1E-10 60.7 -0.0 111 162-276 28-141 (177)
63 KOG1644 U2-associated snRNP A' 97.8 7.1E-05 1.5E-09 58.5 6.2 106 67-173 42-152 (233)
64 PF12799 LRR_4: Leucine Rich r 97.8 5.3E-05 1.2E-09 44.4 4.2 35 91-125 2-36 (44)
65 KOG2123 Uncharacterized conser 97.2 2.3E-05 5E-10 64.2 -3.2 95 161-263 19-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00042 9E-09 56.5 2.5 80 189-268 64-154 (260)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00048 1E-08 56.1 2.5 106 40-147 40-153 (260)
68 PF13306 LRR_5: Leucine rich r 97.0 0.0061 1.3E-07 45.1 8.4 58 110-169 9-66 (129)
69 KOG2123 Uncharacterized conser 96.8 6.4E-05 1.4E-09 61.7 -3.8 98 43-143 19-123 (388)
70 PF13306 LRR_5: Leucine rich r 96.7 0.013 2.9E-07 43.2 8.1 15 38-52 30-44 (129)
71 KOG3864 Uncharacterized conser 96.3 0.00067 1.5E-08 53.2 -0.8 85 214-298 102-193 (221)
72 smart00367 LRR_CC Leucine-rich 96.2 0.0053 1.2E-07 31.3 2.5 25 280-304 1-25 (26)
73 PF00560 LRR_1: Leucine Rich R 95.8 0.0041 8.8E-08 30.3 0.8 16 215-230 2-17 (22)
74 PF13504 LRR_7: Leucine rich r 95.2 0.013 2.8E-07 26.4 1.4 14 214-227 2-15 (17)
75 PF00560 LRR_1: Leucine Rich R 95.2 0.0084 1.8E-07 29.1 0.8 19 192-210 2-20 (22)
76 KOG3864 Uncharacterized conser 94.3 0.016 3.4E-07 45.7 0.7 79 162-245 102-185 (221)
77 KOG4308 LRR-containing protein 93.4 0.00053 1.2E-08 62.4 -10.4 181 45-226 89-303 (478)
78 KOG4308 LRR-containing protein 93.2 0.0008 1.7E-08 61.3 -9.5 179 69-248 89-302 (478)
79 smart00369 LRR_TYP Leucine-ric 92.3 0.16 3.4E-06 25.6 2.3 18 213-230 2-19 (26)
80 smart00370 LRR Leucine-rich re 92.3 0.16 3.4E-06 25.6 2.3 18 213-230 2-19 (26)
81 PF13516 LRR_6: Leucine Rich r 89.6 0.47 1E-05 23.3 2.5 21 281-302 2-22 (24)
82 smart00364 LRR_BAC Leucine-ric 83.3 0.83 1.8E-05 23.1 1.3 18 213-230 2-19 (26)
83 KOG3763 mRNA export factor TAP 81.8 0.86 1.9E-05 41.8 1.8 75 188-263 216-307 (585)
84 PF07725 LRR_3: Leucine Rich R 80.3 0.96 2.1E-05 21.3 0.9 13 1-13 7-19 (20)
85 KOG0473 Leucine-rich repeat pr 74.8 0.081 1.8E-06 42.9 -6.0 84 64-148 39-122 (326)
86 smart00365 LRR_SD22 Leucine-ri 73.3 3.2 6.9E-05 21.0 1.7 15 213-227 2-16 (26)
87 KOG0473 Leucine-rich repeat pr 72.7 0.093 2E-06 42.5 -6.1 54 192-245 67-120 (326)
88 KOG3763 mRNA export factor TAP 62.2 3.9 8.4E-05 37.7 1.1 37 41-77 216-254 (585)
89 smart00368 LRR_RI Leucine rich 61.8 6.8 0.00015 20.0 1.6 13 191-203 3-15 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.1e-28 Score=240.98 Aligned_cols=275 Identities=22% Similarity=0.220 Sum_probs=123.1
Q ss_pred hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCC
Q 020238 10 WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISS 88 (329)
Q Consensus 10 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 88 (329)
|..+..+++|++|++++|......|. .+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+...+| .+..
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 34444445555555554443333333 34444455555555444444444444444455555555444433333 2333
Q ss_pred CCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEe
Q 020238 89 AGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLN 167 (329)
Q Consensus 89 ~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 167 (329)
+++|+.|++++|.+. .+|..++.+++|++|++++|.+....|..+.++++|++|++++|...+.+|..+.++++|+.|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 345555555544443 3444444455555555554444444444444444555555554444444444444444555555
Q ss_pred ccCccccc-cChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChh-------------
Q 020238 168 AEGTAIRE-VPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPES------------- 231 (329)
Q Consensus 168 l~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~------------- 231 (329)
+++|.+.. .|.. +..+++|+.|++++|.+++ +|..++.+++|+.|++++|+++ .+|..
T Consensus 315 l~~n~~~~~~~~~------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 315 LFSNNFTGKIPVA------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCCCccCCcCChh------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 55444432 1111 2334445555555554442 4444444444444444444443 23333
Q ss_pred -----------hhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 232 -----------IIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 232 -----------l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+..+++|+.|++++|.....+|. .+++|+.|++++|...+.++.....+++|+.|++++|.
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 33334444444444333322331 22344444454444433344434444555666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2e-27 Score=235.29 Aligned_cols=289 Identities=20% Similarity=0.226 Sum_probs=202.6
Q ss_pred CCCchh-hhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 2 PHGNIQ-QLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 2 ~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
++|++. .+|..+..+++|++|++++|......|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR--ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh--HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 455554 4566777888888888888875555554 6777788888888887777777777777788888888777666
Q ss_pred CCCc-ccCCCCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccC
Q 020238 81 KTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG 158 (329)
Q Consensus 81 ~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 158 (329)
+.+| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+...+|..+.++++|+.|++++|...+..|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 5555 4455577777777777665 4566666677777777777666555666666666666666666665555555556
Q ss_pred CCccCcEEeccCcccc-ccChhhhhcc------------------ccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEE
Q 020238 159 NLEALNSLNAEGTAIR-EVPLSIVRLN------------------NFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLEL 218 (329)
Q Consensus 159 ~l~~L~~L~l~~~~l~-~~~~~~~~~~------------------~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L 218 (329)
.+++|+.|++++|.+. .+|..+.... .+..+++|+.|++++|.+.+ +|..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 6666666666666554 2332221100 02234556666666666654 66677889999999
Q ss_pred EcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcc
Q 020238 219 YLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLK 293 (329)
Q Consensus 219 ~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~ 293 (329)
++++|+++ .+|..+..++.|+.+++++|.....++. .+++|+.|++++|...+.+|... ....|+.|++++|..
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l 487 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQF 487 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCcc
Confidence 99999998 7788899999999999999886665553 46899999999999877776654 457899999999854
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-26 Score=201.29 Aligned_cols=286 Identities=21% Similarity=0.183 Sum_probs=171.9
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
|.+|.++.+|.......+|+.|+|.+|. +..... ..+..++-|+.|||+.|.+...--..|..-.++++|++++|.+.
T Consensus 109 l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~s-e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 109 LNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTS-EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred eccchhhhcccccccccceeEEeeeccc-cccccH-HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc
Confidence 3456677777666666667777777665 332221 14555666666666665544322222333355666666665544
Q ss_pred CC-CcccCCCCCccEEEecCccccccchh-hhcCCCCCEEEcCCCC------------------------CcccCCcccc
Q 020238 81 KT-LPEISSAGNIEVMYLNGTAIEELPSS-IECLSGLSALYLDHCK------------------------RLKSLPSSLC 134 (329)
Q Consensus 81 ~~-~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~------------------------~~~~~~~~~~ 134 (329)
.. ...+..+.+|..|.+++|+|+.+|.. |.++++|+.|++..|. +..--..+|.
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 22 12344444555555555555555432 3335555555555543 3222233455
Q ss_pred CCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCC
Q 020238 135 KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLS 213 (329)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~ 213 (329)
.+.+++.|++..|+....-..++.+++.|+.|+++.|.|+.+.... +..++.|+.|++++|.++.+++ .+..+.
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-----WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-----WSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-----hhhcccceeEeccccccccCChhHHHHHH
Confidence 5666666666666555555556667777777777777776554333 4456777777777777777654 355567
Q ss_pred CccEEEcCCCcCccCC-hhhhcCCccceecccccccccccC------CCCCCccEEeccCCCCCcCCC-CCCCCCCCCcE
Q 020238 214 LLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP------KLPCNLSELDAHHCTALESSP-GLVFPSRDPQY 285 (329)
Q Consensus 214 ~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~------~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~ 285 (329)
.|++|+|++|.++.+. .++..+++|++|+|++|..--.+. ..+++|+.|.+.+|. +..++ ..+..+..|++
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccce
Confidence 7777777777777555 345667788888888766432221 346789999998877 56665 45567788999
Q ss_pred EEcCCCccc
Q 020238 286 FDLRNNLKL 294 (329)
Q Consensus 286 L~i~~~~~l 294 (329)
||+.++...
T Consensus 421 LdL~~Naia 429 (873)
T KOG4194|consen 421 LDLGDNAIA 429 (873)
T ss_pred ecCCCCcce
Confidence 999888644
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2e-25 Score=194.67 Aligned_cols=287 Identities=20% Similarity=0.201 Sum_probs=213.9
Q ss_pred CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
+++|.+..+ +.+|.++|+|+.+.+.+|. ++.+|. ......+|+.|+|.+|.+...-.+.+..++.|+.||++.|.+
T Consensus 85 lsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 85 LSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred ccccccccCcHHHHhcCCcceeeeeccch-hhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 467777776 5668899999999999998 888887 455566899999999988777777788899999999999765
Q ss_pred CC-CCcccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc
Q 020238 80 LK-TLPEISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL 157 (329)
Q Consensus 80 ~~-~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 157 (329)
.. ..+.+....++++|+++.|.|+.+. ..|..+.+|..|.++.|.+.+..+..|.++++|+.|++..|++...-...|
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 42 2345666689999999999999664 457788899999999988776666778889999999998876544334456
Q ss_pred CCCccCcEEeccCccccccChhhh-hcc------------------ccCCCCCccEEEcCCCCCCCc-chhhcCCCCccE
Q 020238 158 GNLEALNSLNAEGTAIREVPLSIV-RLN------------------NFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLE 217 (329)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~-~~~------------------~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~ 217 (329)
.++++|+.|.+..|.+..+..... .+. -+-++++|++|++++|.+..+ ++.+..++.|+.
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence 667777777666666654433220 000 044566677777777766663 445667888888
Q ss_pred EEcCCCcCccCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccCCCC---CcCCCCCCCCCCCCcEEEcC
Q 020238 218 LYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTA---LESSPGLVFPSRDPQYFDLR 289 (329)
Q Consensus 218 L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~---l~~~~~~~~~~~~L~~L~i~ 289 (329)
|+|+.|+|++++ .++..+..|+.|+|++|. +..+. ...++|+.|++++|.. +++....+..++.|+.|++-
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 888888888776 567778888888888855 44444 3457999999999875 34444555567889999998
Q ss_pred CC
Q 020238 290 NN 291 (329)
Q Consensus 290 ~~ 291 (329)
|+
T Consensus 401 gN 402 (873)
T KOG4194|consen 401 GN 402 (873)
T ss_pred Cc
Confidence 86
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.1e-22 Score=202.57 Aligned_cols=279 Identities=32% Similarity=0.461 Sum_probs=208.2
Q ss_pred hhhccCCC-CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCC
Q 020238 10 WDSVQHNG-KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISS 88 (329)
Q Consensus 10 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 88 (329)
|.++..+| +|+.|.+.++. +...|. .+ ...+|++|++.++. ...++..+..+++|+.|+++++..+..+|.+..
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~-l~~lP~--~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYP-LRCMPS--NF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred CcchhhcCcccEEEEecCCC-CCCCCC--cC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcccc
Confidence 33444443 46666666654 455554 23 46789999999876 455777788899999999999888888888888
Q ss_pred CCCccEEEecCc-cccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEe
Q 020238 89 AGNIEVMYLNGT-AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLN 167 (329)
Q Consensus 89 ~~~L~~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 167 (329)
+++|+.|++.+| .+..+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. ..+|+.|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeee
Confidence 899999999875 456888889999999999999998888888766 6889999999999877776643 35788888
Q ss_pred ccCccccccChhhh--hccc----------------------cCCCCCccEEEcCCCC-CCCcchhhcCCCCccEEEcCC
Q 020238 168 AEGTAIREVPLSIV--RLNN----------------------FDGLQNLTSLYLTDCG-ITELPENLGQLSLLLELYLEK 222 (329)
Q Consensus 168 l~~~~l~~~~~~~~--~~~~----------------------~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~ 222 (329)
++++.+..+|..+. .+.. ....++|+.|++++|. +..+|..++.+++|+.|++++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 88888877664321 0000 1123578889999884 455888899999999999998
Q ss_pred C-cCccCChhhhcCCccceecccccccccccCCC-----------------------CCCccEEeccCCCCCcCCCCCCC
Q 020238 223 N-NFERLPESIIHLSKLAYLKLSYCERLQSLPKL-----------------------PCNLSELDAHHCTALESSPGLVF 278 (329)
Q Consensus 223 ~-~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~-----------------------~~~L~~L~l~~c~~l~~~~~~~~ 278 (329)
| .+..+|... .+++|+.|++++|..+..+|.. +++|+.|++++|+.++.++....
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 8 566777654 6788888888888776655432 35677777777777777777667
Q ss_pred CCCCCcEEEcCCCcccchhH
Q 020238 279 PSRDPQYFDLRNNLKLDRNE 298 (329)
Q Consensus 279 ~~~~L~~L~i~~~~~l~~~~ 298 (329)
.++.|+.+++++|.+++...
T Consensus 891 ~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cccCCCeeecCCCccccccc
Confidence 77778888888888776543
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-22 Score=202.45 Aligned_cols=282 Identities=27% Similarity=0.420 Sum_probs=216.0
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
|++++++.+|.++..+++|+.|+++++..+...|. +..+++|++|++++|.....+|..+..+++|+.|++++|..+
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 56789999999999999999999999887777774 667899999999999988889999999999999999999888
Q ss_pred CCCcccCCCCCccEEEecCccc-cccchhhhcCCCCCEEEcCCCCCcccCCcc---------------------------
Q 020238 81 KTLPEISSAGNIEVMYLNGTAI-EELPSSIECLSGLSALYLDHCKRLKSLPSS--------------------------- 132 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------------------------- 132 (329)
..+|....+++|+.|++++|.. ..+|.. ..+|+.|++++|.+ ..+|..
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc-ccccccccccccccccccccchhhccccccccc
Confidence 7777655667888888876642 233321 34566666666542 222211
Q ss_pred ---ccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc-cccccChhhhhccccCCCCCccEEEcCCCC-CCCcch
Q 020238 133 ---LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT-AIREVPLSIVRLNNFDGLQNLTSLYLTDCG-ITELPE 207 (329)
Q Consensus 133 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~ 207 (329)
...+++|+.|++++|.....+|..+.++++|+.|++++| .+..+|... .+++|+.|++++|. +..+|.
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCccccccc
Confidence 112357888999988888888988999999999999886 466666432 47899999999984 444554
Q ss_pred hhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCC-------
Q 020238 208 NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLV------- 277 (329)
Q Consensus 208 ~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~------- 277 (329)
. .++|+.|++++|.++.+|..+..+++|+.|++++|+.++.+|. .+++|+.+++++|..+..++-..
T Consensus 844 ~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~ 920 (1153)
T PLN03210 844 I---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAM 920 (1153)
T ss_pred c---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhh
Confidence 2 4689999999999999999999999999999999999998884 45788999999999887553211
Q ss_pred ------CCCCCCcEEEcCCCcccchhHH
Q 020238 278 ------FPSRDPQYFDLRNNLKLDRNEI 299 (329)
Q Consensus 278 ------~~~~~L~~L~i~~~~~l~~~~~ 299 (329)
...+....+.+.+|.++...+.
T Consensus 921 ~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 921 ATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred hcccccccCCchhccccccccCCCchhh
Confidence 1112234568889988875553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.1e-26 Score=200.77 Aligned_cols=284 Identities=24% Similarity=0.315 Sum_probs=165.6
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCC-cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNF-FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
.+|+++++-..++.+|.|+.+++..|+. -+.+|. .+..+..|+.||+++|. ++.+|..+..-+++-+|++++|++-
T Consensus 63 ~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~--diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 63 AHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPT--DIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhhhhHhhhhhhccchhhHHHhhhccccccCCCCc--hhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccc
Confidence 3555555555555666666666655541 223333 56667777777777754 4556666666667777777776543
Q ss_pred CCCc--ccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCC----------
Q 020238 81 KTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS---------- 148 (329)
Q Consensus 81 ~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------- 148 (329)
.+| -+.++..|-.|++++|++..+|+.+..+.+|+.|.+++|.+...--..+..+++|++|.+++.+
T Consensus 140 -tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 140 -TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred -cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 333 2344466667788888887788877778888888888775432211222233344444444322
Q ss_pred --------------CCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCC
Q 020238 149 --------------SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSL 214 (329)
Q Consensus 149 --------------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 214 (329)
....+|..+.++++|+.|++++|.++.+.... ....+|+.|+++.|+++.+|.++..++.
T Consensus 219 d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~------~~W~~lEtLNlSrNQLt~LP~avcKL~k 292 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE------GEWENLETLNLSRNQLTVLPDAVCKLTK 292 (1255)
T ss_pred hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH------HHHhhhhhhccccchhccchHHHhhhHH
Confidence 22233444444445555555555544433222 1124455555555555555555555555
Q ss_pred ccEEEcCCCcCc--cCChhhhcCCccceecccccccccccCCC---CCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcC
Q 020238 215 LLELYLEKNNFE--RLPESIIHLSKLAYLKLSYCERLQSLPKL---PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLR 289 (329)
Q Consensus 215 L~~L~l~~~~i~--~~~~~l~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~ 289 (329)
|++|.+.+|+++ .+|+.++.+..|+.+..++ +.+.-+|+. +..|+.|.++.|. +-.+|+.+--++.|..||+.
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeecc
Confidence 666655555544 5555566666666665555 335556643 3578888887766 44577777777888999999
Q ss_pred CCcccchh
Q 020238 290 NNLKLDRN 297 (329)
Q Consensus 290 ~~~~l~~~ 297 (329)
.++++-.-
T Consensus 371 eNpnLVMP 378 (1255)
T KOG0444|consen 371 ENPNLVMP 378 (1255)
T ss_pred CCcCccCC
Confidence 99988543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2.5e-25 Score=186.15 Aligned_cols=283 Identities=29% Similarity=0.385 Sum_probs=156.4
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
.+|++.++|..+..+.++..+++.+++ +...+. ..-.|+.|++||...|. .+.+|..++.+..|+.|++..|.+ .
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~--~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki-~ 219 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPE--NHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKI-R 219 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccc-hhhCCH--HHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccc-c
Confidence 356677777666667677777777766 444443 22336777777776643 556677777777777777777543 3
Q ss_pred CCcccCCCCCccEEEecCccccccchhhh-cCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 82 TLPEISSAGNIEVMYLNGTAIEELPSSIE-CLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
.+|+|.++..|++++++.|.++.+|.... .++++..|++..|. +++.|..+..+.+|..|++++|. +..+|..++++
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl 297 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL 297 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc
Confidence 44455444444444444444444443332 34444444444433 33344444444444444444422 22334444444
Q ss_pred ccCcEEeccCccc-----------------------------------------------------------------cc
Q 020238 161 EALNSLNAEGTAI-----------------------------------------------------------------RE 175 (329)
Q Consensus 161 ~~L~~L~l~~~~l-----------------------------------------------------------------~~ 175 (329)
.|++|.+.||.+ +.
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence 444444444333 33
Q ss_pred cChhhhhccc--------------------------------------------cCCCCCccEEEcCCCCCCCcchhhcC
Q 020238 176 VPLSIVRLNN--------------------------------------------FDGLQNLTSLYLTDCGITELPENLGQ 211 (329)
Q Consensus 176 ~~~~~~~~~~--------------------------------------------~~~~~~L~~L~l~~~~l~~~~~~~~~ 211 (329)
+|.+++.... +..++.|..|++++|-+.++|..++.
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~ 456 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS 456 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh
Confidence 3322211000 33344555555555555555555555
Q ss_pred CCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC----CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEE
Q 020238 212 LSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK----LPCNLSELDAHHCTALESSPGLVFPSRDPQYFD 287 (329)
Q Consensus 212 ~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 287 (329)
+..|+.|+++.|++..+|+.+-.+..++.+-.+ +..++.+++ .+.+|..|++.+|. ++.+|+.++.+.+|++|+
T Consensus 457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas-~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLAS-NNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLE 534 (565)
T ss_pred hhhhheecccccccccchHHHhhHHHHHHHHhc-cccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEE
Confidence 555555555555555555444333333333322 234444542 35789999998877 788999999999999999
Q ss_pred cCCCccc
Q 020238 288 LRNNLKL 294 (329)
Q Consensus 288 i~~~~~l 294 (329)
++|+|.=
T Consensus 535 L~gNpfr 541 (565)
T KOG0472|consen 535 LDGNPFR 541 (565)
T ss_pred ecCCccC
Confidence 9999754
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=5.8e-25 Score=193.62 Aligned_cols=276 Identities=25% Similarity=0.383 Sum_probs=227.0
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
||+|+++.+|.++.+.+++..|+|++|+ +..+|.. .+-++..|-.||+++|. +..+|..+..+..|++|++++|...
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~-lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNS-LFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCc-cccCCch-HHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhh
Confidence 6889999999999999999999999987 8888874 67788888999999966 6678888899999999999998754
Q ss_pred CC-CcccCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc
Q 020238 81 KT-LPEISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL 157 (329)
Q Consensus 81 ~~-~~~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 157 (329)
.. +..+..+..|+.|.++++.-+ .+|..+..+.+|+.++++.|. +..+|..+.++++|+.|++++|.+. .+.-..
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~ 264 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE 264 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCcee-eeeccH
Confidence 22 234455677888899987654 789999999999999999966 6778888899999999999996554 444455
Q ss_pred CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC--CcchhhcCCCCccEEEcCCCcCccCChhhhcC
Q 020238 158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT--ELPENLGQLSLLLELYLEKNNFERLPESIIHL 235 (329)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~ 235 (329)
..+.+|++|+++.|++..+|..++. ++.|+.|.+.+|+++ ++|..++.+.+|+.+..++|.+.-+|+.+.+|
T Consensus 265 ~~W~~lEtLNlSrNQLt~LP~avcK------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC 338 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTVLPDAVCK------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC 338 (1255)
T ss_pred HHHhhhhhhccccchhccchHHHhh------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh
Confidence 6778999999999999999988754 678899999999766 69999999999999999999999999999999
Q ss_pred CccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEc
Q 020238 236 SKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDL 288 (329)
Q Consensus 236 ~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i 288 (329)
.+|+.|.+++|+.++ +| ..++.|+.|++..|+.+..-|...-..+.++.-+|
T Consensus 339 ~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred HHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 999999999877654 56 45688999999999988766655544455655433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=5.2e-25 Score=184.23 Aligned_cols=233 Identities=25% Similarity=0.348 Sum_probs=159.4
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCc-----------------------ccCcEEeccCCCCCcc
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHL-----------------------DKLVNLNLNNCKSLRI 58 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~~~~~~~ 58 (329)
++|+++.+-+.+..+..+..++++.++ ....|. .++.+ +.++.++.++|.. ..
T Consensus 53 s~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~--aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~-~e 128 (565)
T KOG0472|consen 53 SHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPA--AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL-KE 128 (565)
T ss_pred ccCchhhccHhhhcccceeEEEeccch-hhhCCH--HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-ee
Confidence 455555555555555555555555554 444443 34444 4444444444332 23
Q ss_pred cCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCC
Q 020238 59 LPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKS 138 (329)
Q Consensus 59 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 138 (329)
+++.++.+..++.++..+|++....+++..+.++..+++.++.+.++|+..-.++.|++++... +.++.+|+.++.+.+
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLES 207 (565)
T ss_pred cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhh
Confidence 4444455555555555555555444455555566666666666666665555567777777766 446677777778888
Q ss_pred CcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEE
Q 020238 139 LNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLEL 218 (329)
Q Consensus 139 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L 218 (329)
|..|++..| .+..+| .|.++..|+.++++.|.+..+|.+. .+.++++..||+.+|++++.|+.+.-+++|.+|
T Consensus 208 L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~-----~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 208 LELLYLRRN-KIRFLP-EFPGCSLLKELHVGENQIEMLPAEH-----LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hHHHHhhhc-ccccCC-CCCccHHHHHHHhcccHHHhhHHHH-----hcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 888888774 344556 6778888888888888888777776 567889999999999999999999999999999
Q ss_pred EcCCCcCccCChhhhcCCccceecccccc
Q 020238 219 YLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 219 ~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
|+++|.|+.+|..++++ .|+.|-+.||+
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCc
Confidence 99999999999888888 88888888776
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=7.8e-20 Score=171.13 Aligned_cols=255 Identities=23% Similarity=0.287 Sum_probs=189.9
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
|++++++++|..+. ++|+.|++.+|+ ++.+|. ..++|++|++++|.+. .+|.. .++|+.|++++|.+.
T Consensus 208 Ls~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 208 VGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence 46778888887765 489999999876 666664 2578999999998654 45542 367889999987643
Q ss_pred CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
.+|.+ ..+|+.|++++|.+..+|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+. .+|.. .
T Consensus 276 -~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p 341 (788)
T PRK15387 276 -HLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---P 341 (788)
T ss_pred -hhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---c
Confidence 44432 25788899999988877753 4789999999987543 4432 345778888886554 45532 2
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY 240 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~ 240 (329)
.+|+.|++++|.+..+|.. .++|+.|++++|.++.+|.. ..+|+.|++++|+++.+|.. .++|+.
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l---------p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~ 406 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKE 406 (788)
T ss_pred cccceEecCCCccCCCCCC---------CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCE
Confidence 4789999999998887742 25788889999988887753 35789999999999888743 367899
Q ss_pred ecccccccccccCCCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHH
Q 020238 241 LKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEI 299 (329)
Q Consensus 241 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~ 299 (329)
|++++|. ++.+|..+.+|+.|++++|. ++.+|..+..++.|+.|++++|+ ++....
T Consensus 407 LdLS~N~-LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~-Ls~~~~ 462 (788)
T PRK15387 407 LMVSGNR-LTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP-LSERTL 462 (788)
T ss_pred EEccCCc-CCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC-CCchHH
Confidence 9999975 66788777789999998877 66788888888889999999985 444433
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2e-20 Score=171.45 Aligned_cols=202 Identities=25% Similarity=0.386 Sum_probs=143.1
Q ss_pred CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEecc
Q 020238 90 GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAE 169 (329)
Q Consensus 90 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 169 (329)
.++++++++.+.+..+|.+++.+.+|+.+...+|.+ ..+|..+...++|+.|.+.+| .+..+|....+...|++|++.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 578889999999999998899999999999999775 566666666777777777764 344556666667777788777
Q ss_pred CccccccChhhhhccc--------------------------------------------cCCCCCccEEEcCCCCCCCc
Q 020238 170 GTAIREVPLSIVRLNN--------------------------------------------FDGLQNLTSLYLTDCGITEL 205 (329)
Q Consensus 170 ~~~l~~~~~~~~~~~~--------------------------------------------~~~~~~L~~L~l~~~~l~~~ 205 (329)
.|.+..+|........ +.++.+|+.|++++|.+..+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 7777766653322111 55566777777777777777
Q ss_pred chh-hcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC--CCCCccEEeccCCCCCcCCCCCCCCCCC
Q 020238 206 PEN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK--LPCNLSELDAHHCTALESSPGLVFPSRD 282 (329)
Q Consensus 206 ~~~-~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 282 (329)
|+. +.+++.|+.|+++||.++.+|..+..++.|++|..-+| .+..+|+ ..+.|+.+|++.|..-...-....+.+.
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPN 477 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence 653 55677777777777777777777777777777766553 3555663 3478999999988743322233334478
Q ss_pred CcEEEcCCCccc
Q 020238 283 PQYFDLRNNLKL 294 (329)
Q Consensus 283 L~~L~i~~~~~l 294 (329)
|++||++|+..+
T Consensus 478 LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 478 LKYLDLSGNTRL 489 (1081)
T ss_pred cceeeccCCccc
Confidence 999999999863
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=1.2e-17 Score=157.29 Aligned_cols=243 Identities=24% Similarity=0.298 Sum_probs=114.1
Q ss_pred CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238 18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 97 (329)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 97 (329)
+.+.|+++++. ++..|. .+ .++|+.|++++|.+. .+|..+. .+|++|++++|.+. .+|.. -..+|+.|++
T Consensus 179 ~~~~L~L~~~~-LtsLP~--~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILG-LTTIPA--CI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPAT-LPDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCC-cCcCCc--cc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChh-hhccccEEEC
Confidence 34555555543 444443 12 235556666555433 3443322 35566666655432 23321 0134556666
Q ss_pred cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238 98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP 177 (329)
Q Consensus 98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 177 (329)
++|.+..+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|... .+|..+. ++|+.|++++|.+..+|
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALP 320 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCC
Confidence 6655555554432 35566666554432 3443332 35566666554332 3333221 24555555555555444
Q ss_pred hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCC-C
Q 020238 178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKL-P 256 (329)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~-~ 256 (329)
..+ .++|+.|++++|.++.+|..+ +++|+.|++++|+++.+|..+ .++|+.|++++|. ++.+|+. .
T Consensus 321 ~~l--------~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~ 387 (754)
T PRK15370 321 ETL--------PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPENLP 387 (754)
T ss_pred ccc--------cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCHhHH
Confidence 322 245555555555555554433 245555555555555555433 2455555555543 3344422 2
Q ss_pred CCccEEeccCCCCCcCCCCCC----CCCCCCcEEEcCCCc
Q 020238 257 CNLSELDAHHCTALESSPGLV----FPSRDPQYFDLRNNL 292 (329)
Q Consensus 257 ~~L~~L~l~~c~~l~~~~~~~----~~~~~L~~L~i~~~~ 292 (329)
.+|+.|++++|. +..+|..+ ...+.+..|++.+++
T Consensus 388 ~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 345555555544 23333322 122344555555554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1.6e-17 Score=156.45 Aligned_cols=236 Identities=20% Similarity=0.256 Sum_probs=180.4
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
|++++++.+|..+. ++++.|++++|+ +..+|. .+ .++|++|++++|.+. .+|..+. .+|+.|++++|.+.
T Consensus 185 L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~--~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 185 LKILGLTTIPACIP--EQITTLILDNNE-LKSLPE--NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred eCCCCcCcCCcccc--cCCcEEEecCCC-CCcCCh--hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 45677888886653 589999999987 777775 23 358999999998754 5676543 47999999998765
Q ss_pred CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
.+|... ..+|+.|++++|.+..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|... .+|..+.
T Consensus 255 -~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~-- 324 (754)
T PRK15370 255 -ELPERL-PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP-- 324 (754)
T ss_pred -cCChhH-hCCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc--
Confidence 454321 2589999999999998887553 58999999998754 4555432 47889999987655 4554432
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY 240 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~ 240 (329)
++|+.|++++|.+..+|..+ .++|+.|++++|.++.+|..+ .+.|+.|++++|+++.+|..+. ..|+.
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l--------~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~ 392 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASL--------PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQI 392 (754)
T ss_pred ccceeccccCCccccCChhh--------cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHH
Confidence 68999999999999887654 378999999999999888655 4789999999999999987654 36999
Q ss_pred ecccccccccccCCC-------CCCccEEeccCCCC
Q 020238 241 LKLSYCERLQSLPKL-------PCNLSELDAHHCTA 269 (329)
Q Consensus 241 L~l~~~~~l~~~~~~-------~~~L~~L~l~~c~~ 269 (329)
|++++|. ++.+|.. .+.+..+++.+|+.
T Consensus 393 LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 393 MQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 9999965 4566632 36788999999985
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2.2e-19 Score=164.69 Aligned_cols=243 Identities=23% Similarity=0.238 Sum_probs=179.6
Q ss_pred CCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEE
Q 020238 16 NGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM 95 (329)
Q Consensus 16 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 95 (329)
.++++.|....|....... -..-.+|+.++++++.. ..+|..+..+++|+.++..+|.+......+....+|+.+
T Consensus 218 g~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV----HPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred CcchheeeeccCcceeecc----ccccccceeeecchhhh-hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 4556666666665221111 12234788888888664 346677778888888888887764433455556777777
Q ss_pred EecCccccccchhhhcCCCCCEEEcCCCCCcccCCccc--------------------------cCCCCCcEEeccCCCC
Q 020238 96 YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSL--------------------------CKLKSLNSIYLRWCSS 149 (329)
Q Consensus 96 ~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------------~~l~~L~~L~l~~~~~ 149 (329)
.+..|.++.+|+....+..|++|++..|.+.. +|..+ .....|+.|++.+|..
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 77777777777777777777777777765422 22110 1133477778888777
Q ss_pred CCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238 150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP 229 (329)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~ 229 (329)
....-+.+.+..+|+.|+++.|++..+|... +.++..|++|+++||.++.+|..+..++.|++|...+|++..+|
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~-----~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASK-----LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHH-----HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence 7776667788899999999999999999876 67889999999999999999999999999999999999999999
Q ss_pred hhhhcCCccceecccccccc-cccC-CCC-CCccEEeccCCCCC
Q 020238 230 ESIIHLSKLAYLKLSYCERL-QSLP-KLP-CNLSELDAHHCTAL 270 (329)
Q Consensus 230 ~~l~~~~~L~~L~l~~~~~l-~~~~-~~~-~~L~~L~l~~c~~l 270 (329)
.+..++.|+.+|++.|..- ..++ ..+ ++|++|+++||+.+
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 7889999999999986542 2233 223 79999999999864
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=9.5e-17 Score=150.63 Aligned_cols=229 Identities=22% Similarity=0.223 Sum_probs=160.1
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
+++|+++.+|.. .++|++|++++|+ ++.+|. ..++|+.|++++|.+. .+|.. ..+|+.|++++|.+.
T Consensus 229 L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 229 IPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT 295 (788)
T ss_pred ccCCcCCCCCCC---CCCCcEEEecCCc-cCcccC-----cccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc
Confidence 467899998753 5899999999986 666664 2468999999998743 44442 256888999987654
Q ss_pred CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
.+|. ..++|+.|++++|.+..+|.. ...|+.|++++|.+. .+|. -..+|+.|++++|.+. .+|.. .
T Consensus 296 -~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p 361 (788)
T PRK15387 296 -SLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLA-SLPTL---P 361 (788)
T ss_pred -cccc--cccccceeECCCCccccCCCC---cccccccccccCccc-cccc---cccccceEecCCCccC-CCCCC---C
Confidence 4443 236799999999988877653 245777888887653 3443 1247888888886554 45543 2
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY 240 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~ 240 (329)
.+|+.|++++|.+..+|.. ..+|+.|++++|.++.+|.. .+.|+.|++++|+++.+|.. ..+|+.
T Consensus 362 ~~L~~L~Ls~N~L~~LP~l---------~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~ 426 (788)
T PRK15387 362 SELYKLWAYNNRLTSLPAL---------PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLS 426 (788)
T ss_pred cccceehhhccccccCccc---------ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhh
Confidence 4677788888888776632 24688888888888877643 35788888888888877743 346777
Q ss_pred ecccccccccccCC---CCCCccEEeccCCCCCcC
Q 020238 241 LKLSYCERLQSLPK---LPCNLSELDAHHCTALES 272 (329)
Q Consensus 241 L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~ 272 (329)
|++++|. ++.+|. .+++|+.|++++|+.-+.
T Consensus 427 L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 427 LSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhccCc-ccccChHHhhccCCCeEECCCCCCCch
Confidence 8888754 566774 346788888888875443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=6.4e-19 Score=131.67 Aligned_cols=164 Identities=28% Similarity=0.424 Sum_probs=107.4
Q ss_pred cCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEe
Q 020238 64 FRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY 143 (329)
Q Consensus 64 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 143 (329)
..+.+++.|.+++|......|.++.+.+|+.|++.+|+++++|..++.+++|+.|+++-|. +..+|.+|+.++.|+.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 4455556666666555555555666666666666666667777777777777777777644 455677777777777777
Q ss_pred ccCCCCCC-CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCC
Q 020238 144 LRWCSSLK-SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK 222 (329)
Q Consensus 144 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 222 (329)
+.+|+..+ .+|..|..++.|+.|+++.|.+.-+|..+ +.+++|+.|.+.+|.+-++|..++.+..|++|++.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv------g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV------GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh------hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 77766554 45666666666777777777666666554 345667777777776666777777777777777777
Q ss_pred CcCccCChhhhc
Q 020238 223 NNFERLPESIIH 234 (329)
Q Consensus 223 ~~i~~~~~~l~~ 234 (329)
|+++-+|..+++
T Consensus 183 nrl~vlppel~~ 194 (264)
T KOG0617|consen 183 NRLTVLPPELAN 194 (264)
T ss_pred ceeeecChhhhh
Confidence 776666654443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=3.2e-17 Score=142.70 Aligned_cols=232 Identities=19% Similarity=0.132 Sum_probs=104.2
Q ss_pred ccCCCCceEEEecCCCCcc----cCCCcccccCcccCcEEeccCCCCCc------ccCccccCCCcccEEeecCCCCCCC
Q 020238 13 VQHNGKLKQIISRASNFFT----KSPNHSLTLHLDKLVNLNLNNCKSLR------ILPPGIFRLEFLKELDLWGCSKLKT 82 (329)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~ 82 (329)
+..+.+|+.|++++|.... ..+. .+...+++++++++++.... .++..+..+++|+.|++++|.+...
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~--~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALAS--ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHH--HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3444556666666665211 1111 34455556666666654431 1223344456666666666555432
Q ss_pred Cc-ccCCC---CCccEEEecCcccc-----ccchhhhcC-CCCCEEEcCCCCCcc----cCCccccCCCCCcEEeccCCC
Q 020238 83 LP-EISSA---GNIEVMYLNGTAIE-----ELPSSIECL-SGLSALYLDHCKRLK----SLPSSLCKLKSLNSIYLRWCS 148 (329)
Q Consensus 83 ~~-~~~~~---~~L~~L~l~~~~i~-----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 148 (329)
.+ .+... ++|+.|+++++.+. .+...+..+ ++|+.|++++|.+.. .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 22 11111 33666666665554 122233444 566666666655442 122233444556666665554
Q ss_pred CCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC--cchhhc----CCCCccEE
Q 020238 149 SLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LPENLG----QLSLLLEL 218 (329)
Q Consensus 149 ~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~----~~~~L~~L 218 (329)
..+. ++..+...++|+.|++++|.+....... ....+..+++|++|++++|.+++ +..... ..+.|++|
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA-LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH-HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 4321 1122333345555555555544221100 00013344555555555555543 111011 12455555
Q ss_pred EcCCCcCc-----cCChhhhcCCccceecccccc
Q 020238 219 YLEKNNFE-----RLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 219 ~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~ 247 (329)
++++|.++ .+...+..+++|+.+++++|.
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 55555553 222333344455555555543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=9.2e-18 Score=140.77 Aligned_cols=294 Identities=17% Similarity=0.136 Sum_probs=179.5
Q ss_pred CchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238 4 GNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL 83 (329)
Q Consensus 4 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 83 (329)
-+++.+|..+.. .-..|+|..|. ++.+|.. +|+.+++|++|||++|.+...-|.+|.+++.|..|.+.+++.+.++
T Consensus 56 ~GL~eVP~~LP~--~tveirLdqN~-I~~iP~~-aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 56 KGLTEVPANLPP--ETVEIRLDQNQ-ISSIPPG-AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCcccCcccCCC--cceEEEeccCC-cccCChh-hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 456666655443 67788888887 8888875 8999999999999999988888999999999999988887777777
Q ss_pred c--ccCCCCCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC---------
Q 020238 84 P--EISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK--------- 151 (329)
Q Consensus 84 ~--~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------- 151 (329)
| .+.++..++.|.+.-+++..+ ...+..++++..|.+..|.+...--..+..+..++.+.+..+...-
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 6 466668888888988888744 4567889999999998866433333357777778887776655321
Q ss_pred ---CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC-Ccc-hhhcCCCCccEEEcCCCcCc
Q 020238 152 ---SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELP-ENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 152 ---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~-~~~~~~~~L~~L~l~~~~i~ 226 (329)
..|..++......-..+...++..++..-.. ....++..=-.+.+... ..| ..+..+++|++|++++|+|+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~----c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFL----CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhh----hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 1122223333333333333333322211100 00001110011111111 122 23556777777777777776
Q ss_pred cCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHHHH
Q 020238 227 RLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIRE 301 (329)
Q Consensus 227 ~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~ 301 (329)
.+. .++.....++.|.|..|. +..+. ...+.|+.|++++|.....-|..+-..-.|.+|++-.+|-..+..+.-
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence 554 456666677777776643 33232 344667777777766443334444444566677777766666655554
Q ss_pred Hhhhh
Q 020238 302 ILEDA 306 (329)
Q Consensus 302 ~~~~~ 306 (329)
+.+..
T Consensus 367 l~~Wl 371 (498)
T KOG4237|consen 367 LGEWL 371 (498)
T ss_pred HHHHH
Confidence 44433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=1.1e-16 Score=139.36 Aligned_cols=238 Identities=21% Similarity=0.162 Sum_probs=168.8
Q ss_pred hhhhhhccCCCCceEEEecCCCCcccCCC-----cccccCcccCcEEeccCCCCCcccCccccCC---CcccEEeecCCC
Q 020238 7 QQLWDSVQHNGKLKQIISRASNFFTKSPN-----HSLTLHLDKLVNLNLNNCKSLRILPPGIFRL---EFLKELDLWGCS 78 (329)
Q Consensus 7 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~ 78 (329)
..++..+...+++++++++++.. ...+. ...+..+++|+.|++++|.+....+..+..+ ++|++|++++|.
T Consensus 41 ~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 41 KALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 45667788889999999999863 31111 1146678899999999998765444444444 449999999987
Q ss_pred CCCCC-----cccCCC-CCccEEEecCcccc-----ccchhhhcCCCCCEEEcCCCCCccc----CCccccCCCCCcEEe
Q 020238 79 KLKTL-----PEISSA-GNIEVMYLNGTAIE-----ELPSSIECLSGLSALYLDHCKRLKS----LPSSLCKLKSLNSIY 143 (329)
Q Consensus 79 ~~~~~-----~~~~~~-~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~ 143 (329)
..... ..+... ++|+.|++++|.+. .++..+..+++|++|++.+|.+... ++..+...++|+.|+
T Consensus 120 ~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 120 LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 65321 134455 89999999999887 3445567788999999999887642 333455678999999
Q ss_pred ccCCCCCCC----CCcccCCCccCcEEeccCccccccCh-hhh-hccccCCCCCccEEEcCCCCCCC-----cchhhcCC
Q 020238 144 LRWCSSLKS----LPNELGNLEALNSLNAEGTAIREVPL-SIV-RLNNFDGLQNLTSLYLTDCGITE-----LPENLGQL 212 (329)
Q Consensus 144 l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~ 212 (329)
+++|..... +...+..+++|+.|++++|.+.+... .+. .+ ....+.|++|++++|.+++ +...+..+
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 277 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence 999876532 33456778999999999998774211 111 11 1235799999999999973 44556677
Q ss_pred CCccEEEcCCCcCccC-----ChhhhcC-Cccceecccccc
Q 020238 213 SLLLELYLEKNNFERL-----PESIIHL-SKLAYLKLSYCE 247 (329)
Q Consensus 213 ~~L~~L~l~~~~i~~~-----~~~l~~~-~~L~~L~l~~~~ 247 (329)
++|+.+++++|.++.- .+.+... +.++.+++.+++
T Consensus 278 ~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 278 ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9999999999999732 2334444 678888887654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=6.2e-18 Score=126.42 Aligned_cols=175 Identities=23% Similarity=0.356 Sum_probs=148.9
Q ss_pred cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhh
Q 020238 30 FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI 109 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 109 (329)
++.......+..+.+++.|.+++|. ...+|..+..+.+|++|++.+|++....+.++.+++|+.|++.-|++..+|.+|
T Consensus 20 iSsf~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 20 ISSFEELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccHhhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 3333333356778899999999976 456777889999999999999887766668888999999999999999999999
Q ss_pred hcCCCCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238 110 ECLSGLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG 188 (329)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 188 (329)
+.+|.|++|++.+|+..+ .+|..|..++.|+.|++++| -.+.+|.+++++++|+.|.+..|.+-++|.+++.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~------ 171 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGD------ 171 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHH------
Confidence 999999999999988766 47888888999999999995 4457899999999999999999999999988754
Q ss_pred CCCccEEEcCCCCCCCcchhhcCC
Q 020238 189 LQNLTSLYLTDCGITELPENLGQL 212 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~~~~~~~~~ 212 (329)
+..|++|.+.+|.++-+|+.++++
T Consensus 172 lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHHHHHHhcccceeeecChhhhhh
Confidence 678999999999999988877654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=9e-16 Score=128.96 Aligned_cols=241 Identities=18% Similarity=0.166 Sum_probs=164.1
Q ss_pred CCCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccC-ccccCCCcccEEeecCCC
Q 020238 1 MPHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-PGIFRLEFLKELDLWGCS 78 (329)
Q Consensus 1 l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 78 (329)
|..|+|+.+|++ |+.+++|+.|||++|. ++.+... .|.+++++..|-+-+++..+.+| ..|.++..++.|.+..|+
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccc-hhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 456899999755 7999999999999998 6665543 89999999998888855555555 457778999999988876
Q ss_pred CCCCCc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc------------cCCccccCCCCCcEEec
Q 020238 79 KLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK------------SLPSSLCKLKSLNSIYL 144 (329)
Q Consensus 79 ~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L~l 144 (329)
+.-... .+..++++..|.+.+|.+..++. .+..+..++.+.+..|.+.. ..+.+++......-..+
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 542222 45556888888999998887765 56777788887776665321 11222222111111111
Q ss_pred -------------------------cCCCCCCCCC-cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238 145 -------------------------RWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198 (329)
Q Consensus 145 -------------------------~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 198 (329)
+.|......| ..|.++++|+++++++|.++.+.... |.+...+++|.+.
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a-----Fe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA-----FEGAAELQELYLT 306 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh-----hcchhhhhhhhcC
Confidence 1111122222 23677888888888888888776655 6677888888888
Q ss_pred CCCCCCcch-hhcCCCCccEEEcCCCcCccC-ChhhhcCCccceeccccccc
Q 020238 199 DCGITELPE-NLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCER 248 (329)
Q Consensus 199 ~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~ 248 (329)
+|++..+.. .+.++..|+.|++.+|+|+.+ |-++.....|.+|++-.|+.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 888776543 456688888888888888843 45666777788888776553
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=9.1e-14 Score=118.47 Aligned_cols=219 Identities=17% Similarity=0.177 Sum_probs=152.8
Q ss_pred hhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCc--ccCccccCCCcccEEeecCCCCCCCCc
Q 020238 7 QQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR--ILPPGIFRLEFLKELDLWGCSKLKTLP 84 (329)
Q Consensus 7 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~ 84 (329)
+++-+.-+.+.+|+.+.+.++. +...+.......|++++.||+++|-+.. .+...+..+|+|+.|+++.|.......
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred HHHHHHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 3343445678899999999887 4444432367889999999999976544 344556779999999999987654433
Q ss_pred ccC--CCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC-cccCC
Q 020238 85 EIS--SAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGN 159 (329)
Q Consensus 85 ~~~--~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~ 159 (329)
+.. .++.|+.|.++.|.++ ++...+..+|+|..|++.+|.....-.....-+..|+.|++++|+.++.-. ...+.
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 222 3488999999999988 455556678999999999885332222223346678999999987775421 34567
Q ss_pred CccCcEEeccCccccccChhhh-hccccCCCCCccEEEcCCCCCCCcch--hhcCCCCccEEEcCCCcCc
Q 020238 160 LEALNSLNAEGTAIREVPLSIV-RLNNFDGLQNLTSLYLTDCGITELPE--NLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 160 l~~L~~L~l~~~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~i~ 226 (329)
++.|..|+++.+++.++..... .......+++|++|++..|++.+++. .+..+++|+.|.+.+|.++
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8889999999988875532211 11113467889999999998877543 3556778888887777664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.5e-13 Score=120.84 Aligned_cols=191 Identities=27% Similarity=0.347 Sum_probs=133.6
Q ss_pred CCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEecc
Q 020238 66 LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLR 145 (329)
Q Consensus 66 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 145 (329)
+..-...|++.|.+.....++..+..|+.+.++.|.+..+|..+..+..|++++++.|++ ..+|..+..++ |+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEe
Confidence 334444566665443222244444666667777777777777777788888888887663 44566666555 7777777
Q ss_pred CCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcC
Q 020238 146 WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNF 225 (329)
Q Consensus 146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i 225 (329)
+ +..+.+|..++....|..|+.+.|.+..+|..+ .++.+|+.|.+..|++..+|..+..+| |.+||+++|++
T Consensus 152 N-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql------~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNki 223 (722)
T KOG0532|consen 152 N-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQL------GYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKI 223 (722)
T ss_pred c-CccccCCcccccchhHHHhhhhhhhhhhchHHh------hhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCce
Confidence 6 555677777777778888888888888877765 456778888888888888888777444 88888888888
Q ss_pred ccCChhhhcCCccceecccccccccccC------CCCCCccEEeccCC
Q 020238 226 ERLPESIIHLSKLAYLKLSYCERLQSLP------KLPCNLSELDAHHC 267 (329)
Q Consensus 226 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~------~~~~~L~~L~l~~c 267 (329)
+.+|-.+.+|+.|++|-|.+|+. .+-| ...+-.++|++..|
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 88888888888888888887663 3333 23356677777777
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=4.5e-13 Score=111.24 Aligned_cols=229 Identities=17% Similarity=0.173 Sum_probs=129.6
Q ss_pred ccCcccCcEEeccCCCCCcc----cCccccCCCcccEEeecCCCCCCC----Cc--------ccCCCCCccEEEecCccc
Q 020238 39 TLHLDKLVNLNLNNCKSLRI----LPPGIFRLEFLKELDLWGCSKLKT----LP--------EISSAGNIEVMYLNGTAI 102 (329)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~--------~~~~~~~L~~L~l~~~~i 102 (329)
...+..+++++++||.+... +...+...+.|++.++++- +.+. +| .+..+|+|++++|++|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 33455566666666655432 2233444555666666552 2221 11 233445666777776666
Q ss_pred c-c----cchhhhcCCCCCEEEcCCCCCcccC-------------CccccCCCCCcEEeccCCCCCCC----CCcccCCC
Q 020238 103 E-E----LPSSIECLSGLSALYLDHCKRLKSL-------------PSSLCKLKSLNSIYLRWCSSLKS----LPNELGNL 160 (329)
Q Consensus 103 ~-~----~~~~~~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l 160 (329)
. . +...+.++..|++|.+.+|.+...- .......+.|+++...+|+.-.. +...|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 5 1 2233556777888888777653221 11234456788888777554321 23446666
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc-----cCCh
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE-----RLPE 230 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~-----~~~~ 230 (329)
+.|+.+.+..|.|..-... .....+..+++|+.||+.+|.++. +...+..+++|+.|++++|.+. .+..
T Consensus 185 ~~leevr~~qN~I~~eG~~-al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVT-ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccceEEEecccccCchhH-HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 7888888888877632211 111225678888888888887764 4556677778888888888775 2222
Q ss_pred hhh-cCCccceecccccccccccC-------CCCCCccEEeccCCCC
Q 020238 231 SII-HLSKLAYLKLSYCERLQSLP-------KLPCNLSELDAHHCTA 269 (329)
Q Consensus 231 ~l~-~~~~L~~L~l~~~~~l~~~~-------~~~~~L~~L~l~~c~~ 269 (329)
++. ..|.|+.+.+.+|..-..-. ..-+.|+.|++++|..
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 222 35677777777765432111 1135666666666664
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=1.2e-12 Score=108.76 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=161.9
Q ss_pred hhccCCCCceEEEecCCCCcccCCCc--ccccCcccCcEEeccCCCCCc----ccCc-------cccCCCcccEEeecCC
Q 020238 11 DSVQHNGKLKQIISRASNFFTKSPNH--SLTLHLDKLVNLNLNNCKSLR----ILPP-------GIFRLEFLKELDLWGC 77 (329)
Q Consensus 11 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~----~~~~-------~~~~l~~L~~L~l~~~ 77 (329)
+.......++.+++++|.+.+..... ..+...++|++.++++ -+.+ .+|. ++..++.|++++||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 44567789999999999865544321 1456667888888886 3222 2333 3445789999999998
Q ss_pred CCCCCCc-----ccCCCCCccEEEecCcccccc--------------chhhhcCCCCCEEEcCCCCCccc----CCcccc
Q 020238 78 SKLKTLP-----EISSAGNIEVMYLNGTAIEEL--------------PSSIECLSGLSALYLDHCKRLKS----LPSSLC 134 (329)
Q Consensus 78 ~~~~~~~-----~~~~~~~L~~L~l~~~~i~~~--------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~ 134 (329)
-+....+ -+..+..|+.|.+.+|.+... ......-+.||++....|..-.. +...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 8775543 234468899999999888722 11234567899998888665322 234566
Q ss_pred CCCCCcEEeccCCCCCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----c
Q 020238 135 KLKSLNSIYLRWCSSLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----L 205 (329)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~ 205 (329)
..+.|+.+.++.|.+... +...+..+++|+.|++..|.++...... .-..+..+++|+.+++++|.+.. +
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-LAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-HHHHhcccchheeecccccccccccHHHH
Confidence 778899999988655432 2345778899999999998776432211 11125567899999999998875 3
Q ss_pred chhh-cCCCCccEEEcCCCcCc-----cCChhhhcCCccceeccccccc
Q 020238 206 PENL-GQLSLLLELYLEKNNFE-----RLPESIIHLSKLAYLKLSYCER 248 (329)
Q Consensus 206 ~~~~-~~~~~L~~L~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~~ 248 (329)
...+ ...|.|+.+.+.+|.|+ .+...+...+.|..|++++|+.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3333 34789999999999887 2234556688999999999875
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=3.4e-13 Score=114.45 Aligned_cols=286 Identities=18% Similarity=0.184 Sum_probs=183.0
Q ss_pred CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcc--cCccccCCCcccEEeecCCCCCCCCc---ccCCCCCc
Q 020238 18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI--LPPGIFRLEFLKELDLWGCSKLKTLP---EISSAGNI 92 (329)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L 92 (329)
-|+.|.+.||+.....+.......||++++|.+.+|..++. +-..-..|++|+.+++-.|..+.... -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777777777666666555667777888887777765442 11222347777777777765443321 12234677
Q ss_pred cEEEecCc-ccc--ccchhhhcCCCCCEEEcCCCCCccc--CCccccCCCCCcEEeccCCCCCCCCCcc--cCCCccCcE
Q 020238 93 EVMYLNGT-AIE--ELPSSIECLSGLSALYLDHCKRLKS--LPSSLCKLKSLNSIYLRWCSSLKSLPNE--LGNLEALNS 165 (329)
Q Consensus 93 ~~L~l~~~-~i~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~ 165 (329)
++++++.+ .+. .+.....++..++.+...+|.-.+. +-..-..+..+.++++.+|..++..... -..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 77777644 233 2333344555566665555543221 1111123455666777777655543311 235667788
Q ss_pred EeccCccc-cccChhhhhccccCCCCCccEEEcCCCC-CCC--cchhhcCCCCccEEEcCCCcCc---cCChhhhcCCcc
Q 020238 166 LNAEGTAI-REVPLSIVRLNNFDGLQNLTSLYLTDCG-ITE--LPENLGQLSLLLELYLEKNNFE---RLPESIIHLSKL 238 (329)
Q Consensus 166 L~l~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~~~L~~L~l~~~~i~---~~~~~l~~~~~L 238 (329)
+..+++.- .+.+ +..+ -+++.+|+.+.+.+|+ +++ +...-.+++.|+.+++..+... ++...-.+++.|
T Consensus 299 l~~s~~t~~~d~~--l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 299 LCYSSCTDITDEV--LWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hcccCCCCCchHH--HHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 87776542 2211 1222 3578999999999994 554 3333467999999999998443 344455689999
Q ss_pred ceecccccccccccC--------CCCCCccEEeccCCCCCcCC-CCCCCCCCCCcEEEcCCCcccchhHHHHHhhhhH
Q 020238 239 AYLKLSYCERLQSLP--------KLPCNLSELDAHHCTALESS-PGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQ 307 (329)
Q Consensus 239 ~~L~l~~~~~l~~~~--------~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~ 307 (329)
+++.+++|..+++-. .....|+.+++++|+.+++- -.-...++.|+.+++.+|..++..++..+..+..
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 999999998887652 34568999999999998643 2444667889999999999999999998766553
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-11 Score=118.98 Aligned_cols=152 Identities=29% Similarity=0.321 Sum_probs=111.7
Q ss_pred CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCC-CcccC-ccccCCCcccEEeecCCCCCCCCcc-cCCCCC
Q 020238 15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKS-LRILP-PGIFRLEFLKELDLWGCSKLKTLPE-ISSAGN 91 (329)
Q Consensus 15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 91 (329)
.....+...+.+++ +...+. -..++.|++|-+.++.. ...++ ..|..++.|++||+++|..+..+|. ++.+.+
T Consensus 521 ~~~~~rr~s~~~~~-~~~~~~---~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNK-IEHIAG---SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred chhheeEEEEeccc-hhhccC---CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 33466777777766 444443 34567899999999863 33344 3466799999999999988888884 566799
Q ss_pred ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCC--CCCCcccCCCccCcEEecc
Q 020238 92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSL--KSLPNELGNLEALNSLNAE 169 (329)
Q Consensus 92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~ 169 (329)
|++|+++++.+..+|.++.++..|.+|++..+......+.....+++|++|.+...... ...-..+..+.+|+.+.+.
T Consensus 597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999999999999999999999999998777777776777999999999764311 1112234455556555553
Q ss_pred C
Q 020238 170 G 170 (329)
Q Consensus 170 ~ 170 (329)
.
T Consensus 677 ~ 677 (889)
T KOG4658|consen 677 I 677 (889)
T ss_pred c
Confidence 3
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.4e-12 Score=108.37 Aligned_cols=198 Identities=20% Similarity=0.231 Sum_probs=84.0
Q ss_pred cccCcEEeccCCCCCcccC--ccccCCCcccEEeecCCCCCCCCc--c-cCCCCCccEEEecCccccccc--hhhhcCCC
Q 020238 42 LDKLVNLNLNNCKSLRILP--PGIFRLEFLKELDLWGCSKLKTLP--E-ISSAGNIEVMYLNGTAIEELP--SSIECLSG 114 (329)
Q Consensus 42 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~ 114 (329)
+.+|+++.+.++.... .+ .....|++++.||++.|-+..-.+ . ...+|+|+.|+++.|.+.... ..-..+++
T Consensus 120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4455555555544221 11 123345566666666543221111 1 122355555555555554111 11123455
Q ss_pred CCEEEcCCCCCccc-CCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238 115 LSALYLDHCKRLKS-LPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT 193 (329)
Q Consensus 115 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~ 193 (329)
|+.|.++.|.+... +...+..+|+++.|++.+|...........-+..|+.|++++|.+-+++.... ...++.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~----~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK----VGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc----cccccchh
Confidence 55555555554432 11223345555555555543222111122233445555555555444332111 23445555
Q ss_pred EEEcCCCCCCC--cchh-----hcCCCCccEEEcCCCcCccCC--hhhhcCCccceeccc
Q 020238 194 SLYLTDCGITE--LPEN-----LGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLS 244 (329)
Q Consensus 194 ~L~l~~~~l~~--~~~~-----~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~ 244 (329)
.|.++.+.+.+ +|+. ...++.|+.|++..|+|..++ ..+..+++|+.+.+.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 55555555544 2221 223455555555555554333 223334444444433
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=2.3e-11 Score=99.51 Aligned_cols=219 Identities=19% Similarity=0.119 Sum_probs=144.3
Q ss_pred ccCcccCcEEeccCCCC--------CcccCccccCCCcccEEeecCCCCCCCCcccCCC-CCccEEEecCccccccchhh
Q 020238 39 TLHLDKLVNLNLNNCKS--------LRILPPGIFRLEFLKELDLWGCSKLKTLPEISSA-GNIEVMYLNGTAIEELPSSI 109 (329)
Q Consensus 39 ~~~~~~L~~L~l~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~ 109 (329)
+-.|.+|+.|.+++... -..+|..+.-+++|+.+.++.|.- ..+..+... |.|+++.+..+.++..|.-+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeeccccccccccc
Confidence 44567888888876432 112344445578999999998753 233344334 88899988877766443221
Q ss_pred hcCCCCCEEEcCCCCC--c-ccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhcccc
Q 020238 110 ECLSGLSALYLDHCKR--L-KSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNF 186 (329)
Q Consensus 110 ~~l~~L~~L~l~~~~~--~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 186 (329)
|.=...+.++..- . ......+..+..|+++++++| .+..+.+...-.+.++.|+++.|++..+.. +
T Consensus 257 ---pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-------L 325 (490)
T KOG1259|consen 257 ---PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-------L 325 (490)
T ss_pred ---chhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-------h
Confidence 1111122222111 1 111123445778899999984 444566666777899999999998886643 4
Q ss_pred CCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc--cccC--CCCCCccEE
Q 020238 187 DGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL--QSLP--KLPCNLSEL 262 (329)
Q Consensus 187 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l--~~~~--~~~~~L~~L 262 (329)
+.+++|++||+++|.++++..+-..+-+.++|.+++|.|.++. .+..+-+|..|++++|+.- ..+. ..+|-|+.+
T Consensus 326 a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred hhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 5678999999999998887777777888999999999887653 5677788889999887532 1111 345678888
Q ss_pred eccCCCCC
Q 020238 263 DAHHCTAL 270 (329)
Q Consensus 263 ~l~~c~~l 270 (329)
.+.+||.-
T Consensus 405 ~L~~NPl~ 412 (490)
T KOG1259|consen 405 RLTGNPLA 412 (490)
T ss_pred hhcCCCcc
Confidence 88888843
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=6.8e-12 Score=110.59 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=156.2
Q ss_pred cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhh
Q 020238 30 FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI 109 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 109 (329)
+.+.|....--.+..-...+++.|.+. .+|..+..|..|+.+.++.|.+....+.+..+..|+.++++.|.++.+|..+
T Consensus 62 lk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l 140 (722)
T KOG0532|consen 62 LKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL 140 (722)
T ss_pred hhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh
Confidence 454544322233445566777876643 4677778888899999998877666667777788999999999999888888
Q ss_pred hcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCC
Q 020238 110 ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGL 189 (329)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 189 (329)
..++ |+.|-+++|. .+.+|..++..+.|..|+.+.|... .+|..++.+.+|+.|.+..|.+..+|.++..
T Consensus 141 C~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~------- 210 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS------- 210 (722)
T ss_pred hcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-------
Confidence 7766 8888888855 5778888888888999999886554 5677788889999999999999999888743
Q ss_pred CCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhh---cCCccceeccccc
Q 020238 190 QNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESII---HLSKLAYLKLSYC 246 (329)
Q Consensus 190 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~---~~~~L~~L~l~~~ 246 (329)
-.|..||++.|++..+|..+..+..|+.|-|.+|.+.+=|..+. ...-.++|+..-|
T Consensus 211 LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 35889999999999999999999999999999998876554332 2233456666655
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=3.3e-10 Score=101.56 Aligned_cols=175 Identities=31% Similarity=0.391 Sum_probs=95.8
Q ss_pred CCcccEEeecCCCCCCCCcccCCCC-CccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEec
Q 020238 66 LEFLKELDLWGCSKLKTLPEISSAG-NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYL 144 (329)
Q Consensus 66 l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 144 (329)
...++.|++.++.+....+...... +|+.|+++++.+..++..+..+++|+.|++++|++ ..++......+.|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheec
Confidence 3556666666654332222222232 66666666666666655566666666666666553 333333334566666666
Q ss_pred cCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCc
Q 020238 145 RWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNN 224 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 224 (329)
++|. ...+|........|+++.+++|.+...+.. +..+..+..+.+.+|.+..++..++.+++++.|++++|.
T Consensus 194 s~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~------~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 194 SGNK-ISDLPPEIELLSALEELDLSNNSIIELLSS------LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred cCCc-cccCchhhhhhhhhhhhhhcCCcceecchh------hhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 6633 334444333444466666666643322222 234455555556666665555556666666666666666
Q ss_pred CccCChhhhcCCccceecccccccc
Q 020238 225 FERLPESIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 225 i~~~~~~l~~~~~L~~L~l~~~~~l 249 (329)
++.++. ++...+++.++++++...
T Consensus 267 i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccc-ccccCccCEEeccCcccc
Confidence 666654 566666666666665443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=3e-10 Score=101.90 Aligned_cols=191 Identities=34% Similarity=0.419 Sum_probs=117.6
Q ss_pred EEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCC-CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC
Q 020238 71 ELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLS-GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS 149 (329)
Q Consensus 71 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 149 (329)
.++...+........+.....++.+++.++.+.+++....... +|+.|+++.|.+ ..++..+..+++|+.|++++|+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchh
Confidence 4555555543444444445667777777777777766666663 777777777553 33434456677777777777544
Q ss_pred CCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238 150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP 229 (329)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~ 229 (329)
. .++......+.|+.|++++|.+..+|... .....|+.+.+++|.+...+..+..+.++..+.+.+|++..++
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~------~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKISDLPPEI------ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccccCchhh------hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc
Confidence 4 33333335667777777777777766543 1234577777777765555556666777777777777666656
Q ss_pred hhhhcCCccceecccccccccccC--CCCCCccEEeccCCCCC
Q 020238 230 ESIIHLSKLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTAL 270 (329)
Q Consensus 230 ~~l~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l 270 (329)
..+..++.++.|++++|. +++++ ....+++.|+++++...
T Consensus 249 ~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceecccccc-ccccccccccCccCEEeccCcccc
Confidence 666667777777777643 44444 23356777777766544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2.6e-10 Score=88.66 Aligned_cols=84 Identities=30% Similarity=0.338 Sum_probs=20.3
Q ss_pred CCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc--hhhcCCC
Q 020238 136 LKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP--ENLGQLS 213 (329)
Q Consensus 136 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~ 213 (329)
+.+|+.|++++|.+... ..+..++.|+.|++++|.++.+...+ ...+++|++|++++|.+.++. ..+..++
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l-----~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGL-----DKNLPNLQELYLSNNKISDLNELEPLSSLP 113 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH-----HHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccch-----HHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence 34444555544333321 12334444444444444444433221 012344444444444444321 1233344
Q ss_pred CccEEEcCCCcCc
Q 020238 214 LLLELYLEKNNFE 226 (329)
Q Consensus 214 ~L~~L~l~~~~i~ 226 (329)
+|+.|++.+|.++
T Consensus 114 ~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 114 KLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TT-GGG
T ss_pred CcceeeccCCccc
Confidence 4444444444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=6.6e-10 Score=86.43 Aligned_cols=124 Identities=28% Similarity=0.345 Sum_probs=45.4
Q ss_pred CCCCCcEEeccCCCCCCCCCcccC-CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh-cCC
Q 020238 135 KLKSLNSIYLRWCSSLKSLPNELG-NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQL 212 (329)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~ 212 (329)
+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.++.+.. +..++.|+.|++++|.++++...+ ..+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT-----------TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCCccccchHHhC
Confidence 44467777777755443 2 2333 46778888888888776542 455778888888888888875544 357
Q ss_pred CCccEEEcCCCcCccCC--hhhhcCCccceecccccccccccC-------CCCCCccEEeccCCC
Q 020238 213 SLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCERLQSLP-------KLPCNLSELDAHHCT 268 (329)
Q Consensus 213 ~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~l~~~~-------~~~~~L~~L~l~~c~ 268 (329)
|+|+.|++++|+|..+. ..+..+++|+.|++.+|+.-. .+ ..+|+|+.||-....
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence 88888888888876433 566778888888888877532 22 234677777665543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=2.3e-10 Score=110.27 Aligned_cols=108 Identities=22% Similarity=0.219 Sum_probs=68.4
Q ss_pred CCCCceEEEecCCCC-cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCcc
Q 020238 15 HNGKLKQIISRASNF-FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE 93 (329)
Q Consensus 15 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 93 (329)
.+++|++|-+.++.. +...+.. .|..+|.|+.||+++|.....+|..++.+.+|+.|++++..+..-...+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 555777777777652 3333321 36667777777777777777777777777777777777755443333555567777
Q ss_pred EEEecCcccc-ccchhhhcCCCCCEEEcCCC
Q 020238 94 VMYLNGTAIE-ELPSSIECLSGLSALYLDHC 123 (329)
Q Consensus 94 ~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~ 123 (329)
+|++..+... .++.....+++||+|.+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 7777765433 33344445777777777653
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=9.7e-11 Score=95.88 Aligned_cols=223 Identities=17% Similarity=0.120 Sum_probs=95.5
Q ss_pred ccCCCCceEEEecCCCCcccCCC------cccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCccc
Q 020238 13 VQHNGKLKQIISRASNFFTKSPN------HSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEI 86 (329)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 86 (329)
+.-|..|++|.+++-..--+... ...+.-+.+|+.+.++.|. .+.+......-|.|+++.+.+.. ....|.+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~~~l 255 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDVPSL 255 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-ccccccc
Confidence 34456788888876542111111 1144556778888888875 22233322334667776665432 2222211
Q ss_pred CCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCc
Q 020238 87 SSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALN 164 (329)
Q Consensus 87 ~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 164 (329)
.....+....-..-... .....+...+.|+.+++++|.+ +.+...+.-.|.++.|++++|.+... ..++.+++|+
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~ 332 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQ 332 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccce
Confidence 11111110000000000 0011112233444555555332 22333333344555555555433322 1244445555
Q ss_pred EEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC--hhhhcCCccceec
Q 020238 165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLK 242 (329)
Q Consensus 165 ~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~ 242 (329)
.|++++|.+..+...- ..+-+++.|.+++|.+.++. .+..+-+|..||+++|+|..+. ..++++|.|+++.
T Consensus 333 ~LDLS~N~Ls~~~Gwh------~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 333 LLDLSGNLLAECVGWH------LKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred EeecccchhHhhhhhH------hhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 5555555444332211 12334455555555444331 2344445555555555555222 3455556666666
Q ss_pred ccccc
Q 020238 243 LSYCE 247 (329)
Q Consensus 243 l~~~~ 247 (329)
+.+|+
T Consensus 406 L~~NP 410 (490)
T KOG1259|consen 406 LTGNP 410 (490)
T ss_pred hcCCC
Confidence 65554
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.4e-11 Score=99.16 Aligned_cols=175 Identities=18% Similarity=0.141 Sum_probs=91.7
Q ss_pred CCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc-cccccChhhhhccccCCCCC
Q 020238 114 GLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT-AIREVPLSIVRLNNFDGLQN 191 (329)
Q Consensus 114 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~ 191 (329)
.+++++++...+.. .+...+..+.+|+.|.+.+....+.+...++....|+.++++++ +++......- +..|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll----~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL----LSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH----HHhhhh
Confidence 46666666543322 12233455666666666665555555455555566666666654 3332222111 345666
Q ss_pred ccEEEcCCCCCCC--cchhhcC-CCCccEEEcCCCc--C--ccCChhhhcCCccceecccccccccccC----CCCCCcc
Q 020238 192 LTSLYLTDCGITE--LPENLGQ-LSLLLELYLEKNN--F--ERLPESIIHLSKLAYLKLSYCERLQSLP----KLPCNLS 260 (329)
Q Consensus 192 L~~L~l~~~~l~~--~~~~~~~-~~~L~~L~l~~~~--i--~~~~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~ 260 (329)
|.+|+++.|.++. +...+.. -++|++|+++|+. + +.+.....++++|.+||++.|..++.-- -.++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 6677776665443 2222222 4566677777662 1 1333334567777777777766554300 2345677
Q ss_pred EEeccCCCCCcCC-CCCCCCCCCCcEEEcCCCc
Q 020238 261 ELDAHHCTALESS-PGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 261 ~L~l~~c~~l~~~-~~~~~~~~~L~~L~i~~~~ 292 (329)
+|.++.|..+..- -..+...+.|.+||+-||-
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 7777777655210 0112344567777777763
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.82 E-value=7.5e-11 Score=100.45 Aligned_cols=258 Identities=19% Similarity=0.250 Sum_probs=172.6
Q ss_pred hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCccc--CccccCCCcccEEeecCCCCCCC--Cc-c
Q 020238 11 DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL--PPGIFRLEFLKELDLWGCSKLKT--LP-E 85 (329)
Q Consensus 11 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~--~~-~ 85 (329)
.....||+++.|++.+|..+++........+|++|++|++..|...+.. -.-...|++|++++++.|.-+.. +. -
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 3367899999999999998888776667889999999999998766632 22335699999999999975533 22 2
Q ss_pred cCCCCCccEEEecCcc-cc--ccchhhhcCCCCCEEEcCCCCCcccCC--ccccCCCCCcEEeccCCCCCCCCCc--ccC
Q 020238 86 ISSAGNIEVMYLNGTA-IE--ELPSSIECLSGLSALYLDHCKRLKSLP--SSLCKLKSLNSIYLRWCSSLKSLPN--ELG 158 (329)
Q Consensus 86 ~~~~~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~--~~~ 158 (329)
..+...++.+...++. .+ .+-..-+.++.+-.+++..|..++... ..-..+..|+++..++|...+..+- -..
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 2233446666555432 11 121222345566667766765544332 2234577889999988776654332 235
Q ss_pred CCccCcEEeccCccc-cccChhhhhccccCCCCCccEEEcCCCCCC-C--cchhhcCCCCccEEEcCCCc-Cc-c-C---
Q 020238 159 NLEALNSLNAEGTAI-REVPLSIVRLNNFDGLQNLTSLYLTDCGIT-E--LPENLGQLSLLLELYLEKNN-FE-R-L--- 228 (329)
Q Consensus 159 ~l~~L~~L~l~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~--~~~~~~~~~~L~~L~l~~~~-i~-~-~--- 228 (329)
+..+|+.+.++++.. ........ -.+++.|+.+++.++... + +.....+++.|+.+.+++|. |+ + +
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l----~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTML----GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhh----hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 678899999988752 22221110 246788999999998443 2 55556779999999999884 33 1 1
Q ss_pred ChhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCCcC
Q 020238 229 PESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALES 272 (329)
Q Consensus 229 ~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~ 272 (329)
...-.....|+.+.+++|+.+++-. ..+++|+++++.+|..+..
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 1223456789999999999876543 4567999999999987643
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.74 E-value=2.1e-09 Score=86.86 Aligned_cols=184 Identities=18% Similarity=0.149 Sum_probs=108.3
Q ss_pred cCCCCCccEEEecCcccc-ccc----hhhhcCCCCCEEEcCCCCCcccC----C---------ccccCCCCCcEEeccCC
Q 020238 86 ISSAGNIEVMYLNGTAIE-ELP----SSIECLSGLSALYLDHCKRLKSL----P---------SSLCKLKSLNSIYLRWC 147 (329)
Q Consensus 86 ~~~~~~L~~L~l~~~~i~-~~~----~~~~~l~~L~~L~l~~~~~~~~~----~---------~~~~~l~~L~~L~l~~~ 147 (329)
+.++|++++.++++|.+. ..| ..+++-..|.+|.+.+|.+-... . ....+-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 344455555555555544 222 23444556666666665532110 0 11234567888887775
Q ss_pred CCCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhhcCCCCccEE
Q 020238 148 SSLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENLGQLSLLLEL 218 (329)
Q Consensus 148 ~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L 218 (329)
+.-.. ....+.....|+.+.+..|+|+.-.........+.++.+|+.||+.+|.++. +...+..++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 54321 1123444568899999999887432222222225678999999999998874 45567788999999
Q ss_pred EcCCCcCc--cCChhhh-----cCCccceeccccccccccc------C----CCCCCccEEeccCCCC
Q 020238 219 YLEKNNFE--RLPESII-----HLSKLAYLKLSYCERLQSL------P----KLPCNLSELDAHHCTA 269 (329)
Q Consensus 219 ~l~~~~i~--~~~~~l~-----~~~~L~~L~l~~~~~l~~~------~----~~~~~L~~L~l~~c~~ 269 (329)
.+..|-++ .....+. ..|+|..|...+|..-..+ + ...|-|..|.+.+|..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 99999776 2222222 2677888888877543211 1 2345666666776653
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3e-10 Score=92.88 Aligned_cols=175 Identities=20% Similarity=0.249 Sum_probs=128.4
Q ss_pred CCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC--cccCCCccCcE
Q 020238 90 GNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP--NELGNLEALNS 165 (329)
Q Consensus 90 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~ 165 (329)
.+++.+|++...++ .+...+..|.+|+.|.+.++...+.+...++.-.+|+.++++.|+..+... ..+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 56888999988877 455567788999999999988777776777788899999999988776543 33678899999
Q ss_pred EeccCccccc--cChhhhhccccCCCCCccEEEcCCC--CCC--CcchhhcCCCCccEEEcCCC-cCc-cCChhhhcCCc
Q 020238 166 LNAEGTAIRE--VPLSIVRLNNFDGLQNLTSLYLTDC--GIT--ELPENLGQLSLLLELYLEKN-NFE-RLPESIIHLSK 237 (329)
Q Consensus 166 L~l~~~~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~--~l~--~~~~~~~~~~~L~~L~l~~~-~i~-~~~~~l~~~~~ 237 (329)
|+++.+.+.. +...+.. --++|+.|+++|+ .+. .+......||+|..||+++| .++ .....+.+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~h-----ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAH-----ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred cCchHhhccchhhhHHHhh-----hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 9999987652 1111111 1367888999987 222 24445677999999999998 455 45567788999
Q ss_pred cceecccccccccc---cC-CCCCCccEEeccCCCC
Q 020238 238 LAYLKLSYCERLQS---LP-KLPCNLSELDAHHCTA 269 (329)
Q Consensus 238 L~~L~l~~~~~l~~---~~-~~~~~L~~L~l~~c~~ 269 (329)
|++|.++.|..+-. +. ...|+|.+|++.+|-.
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 99999999976521 10 3457999999988853
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=3.1e-08 Score=63.32 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=50.1
Q ss_pred CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCC
Q 020238 17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCS 78 (329)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 78 (329)
|+|++|++++|+ +..++.. .+.++++|++|++++|.+...-+..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPD-SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTT-TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHH-HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999986 7777653 78889999999999988877667788889999999999875
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=8.8e-09 Score=84.44 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=41.8
Q ss_pred cCcccCcEEeccCCCCCc--ccCccccCCCcccEEeecCCCCCCCCcccC-CCCCccEEEecCcccc--ccchhhhcCCC
Q 020238 40 LHLDKLVNLNLNNCKSLR--ILPPGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNGTAIE--ELPSSIECLSG 114 (329)
Q Consensus 40 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~--~~~~~~~~l~~ 114 (329)
..+.+++++|+.+|.+.. .+...+.++|.|+.|+++.|+....+.... ...+|+.+.+.++.+. .....+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 344556666666655433 333444556666666666555444443332 2345555555555544 22333444555
Q ss_pred CCEEEcCCC
Q 020238 115 LSALYLDHC 123 (329)
Q Consensus 115 L~~L~l~~~ 123 (329)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=5.5e-08 Score=62.17 Aligned_cols=56 Identities=38% Similarity=0.567 Sum_probs=26.7
Q ss_pred CccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccc
Q 020238 191 NLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYC 246 (329)
Q Consensus 191 ~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~ 246 (329)
+|+.|++++|+++.++. .+..+++|+.|++++|.++.++ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444555554444442 3344555555555555554443 34445555555555544
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=1.5e-07 Score=88.81 Aligned_cols=107 Identities=24% Similarity=0.368 Sum_probs=85.8
Q ss_pred cCcEEeccCcccc-ccChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChhhhcCCcc
Q 020238 162 ALNSLNAEGTAIR-EVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKL 238 (329)
Q Consensus 162 ~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L 238 (329)
.++.|+++++.+. .+|.. +..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+++ .+|..+.++++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~------i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND------ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHH------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 3778888888887 44544 3668899999999999985 8888899999999999999998 788889999999
Q ss_pred ceecccccccccccCCCC----CCccEEeccCCCCCcCCC
Q 020238 239 AYLKLSYCERLQSLPKLP----CNLSELDAHHCTALESSP 274 (329)
Q Consensus 239 ~~L~l~~~~~l~~~~~~~----~~L~~L~l~~c~~l~~~~ 274 (329)
+.|++++|.....+|..+ .++..+++.+|+.+...|
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999988777777432 356788888887765443
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=6.6e-07 Score=78.31 Aligned_cols=55 Identities=24% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC
Q 020238 90 GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS 149 (329)
Q Consensus 90 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 149 (329)
.+++.|+++++.+..+|. -..+|++|.+++|..+..+|..+ .++|+.|++++|..
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPE 106 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccc
Confidence 445555555555554441 11245555555544444444332 23455555555433
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=3.1e-07 Score=86.70 Aligned_cols=104 Identities=27% Similarity=0.324 Sum_probs=70.5
Q ss_pred ccEEeecCCCCCCCCc-ccCCCCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccC
Q 020238 69 LKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRW 146 (329)
Q Consensus 69 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 146 (329)
++.|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+...+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5666777766655554 3555577777777777765 5666677777777777777777667777777777777777777
Q ss_pred CCCCCCCCcccCCC-ccCcEEeccCcc
Q 020238 147 CSSLKSLPNELGNL-EALNSLNAEGTA 172 (329)
Q Consensus 147 ~~~~~~~~~~~~~l-~~L~~L~l~~~~ 172 (329)
|...+.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77777777665432 345566666664
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=2.2e-08 Score=90.25 Aligned_cols=195 Identities=26% Similarity=0.234 Sum_probs=90.3
Q ss_pred CCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEE
Q 020238 16 NGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM 95 (329)
Q Consensus 16 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 95 (329)
+..++.+.+..+. +..... .+..+.+|+.|++.+|.+.+ +...+..+++|++|++++|. +..+..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~-i~~~~~--~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNL-IAKILN--HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhh-hhhhhc--ccccccceeeeeccccchhh-cccchhhhhcchheeccccc-cccccchhhccchhhh
Confidence 3444444444443 332121 24556666666666655333 22224456666666666643 3344444555556666
Q ss_pred EecCccccccchhhhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238 96 YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR 174 (329)
Q Consensus 96 ~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 174 (329)
++.+|.+..+.. +..++.|+.+++++|.+...-+ . ...+..++.+++.+|...... .+..+..+..+++..|.+.
T Consensus 146 ~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccce
Confidence 666666654432 3335666666666655433222 1 344555666666654433221 1112222223344444433
Q ss_pred ccChhhhhccccCCCCC--ccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238 175 EVPLSIVRLNNFDGLQN--LTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 175 ~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~ 226 (329)
.+.. +..... |+.+++.++.+...+..+..++.+..+++..+++.
T Consensus 222 ~~~~-------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 222 KLEG-------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eccC-------cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 2211 011111 45555555555544333444555555555555443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.9e-08 Score=90.61 Aligned_cols=193 Identities=31% Similarity=0.354 Sum_probs=99.6
Q ss_pred CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEEEecCccccccchhhhcCCCCCEEE
Q 020238 41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALY 119 (329)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 119 (329)
.+..++.+++..+.+.+ +-..+..+.+|+.+++.+|.+. .+.. +..+++|+.|++++|.|..+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 34455555555544333 2222445566666666665433 3333 555566677777766666443 244555566666
Q ss_pred cCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC-cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238 120 LDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198 (329)
Q Consensus 120 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 198 (329)
+.+|.+... ..+..++.|+.+++++|.....-+ . ...+.+++.+.+.+|.+..+... ..+..+..+++.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~-------~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL-------DLLKKLVLLSLL 216 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch-------HHHHHHHHhhcc
Confidence 666554321 123335666666666654443322 1 34555666666666665543211 112333444555
Q ss_pred CCCCCCcchhhcCCC--CccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238 199 DCGITELPENLGQLS--LLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 199 ~~~l~~~~~~~~~~~--~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
.|.++.+.. +.... .|+.+++++|++..++..+..+..+..+++..+.
T Consensus 217 ~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 217 DNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred cccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 555554321 11222 2666666666666554455556666666666543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=2.4e-09 Score=97.50 Aligned_cols=195 Identities=24% Similarity=0.231 Sum_probs=120.6
Q ss_pred CCCceEEEecCCCCcccC-CCcccccCcccCcEEeccCCCCCcccCccccCC-CcccEEeecCCCC-------CCCCccc
Q 020238 16 NGKLKQIISRASNFFTKS-PNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRL-EFLKELDLWGCSK-------LKTLPEI 86 (329)
Q Consensus 16 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~-------~~~~~~~ 86 (329)
+++++.+.+.....-... |. .+..+..|++|.+.+|++... .++..+ ..|++|--.+ .. .....++
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi--~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPI--SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDI 157 (1096)
T ss_pred HhhheeeeecccCCCCCCCCc--eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccc
Confidence 345555655554422222 32 567788888888888876541 111111 1233322111 10 0111222
Q ss_pred CCC---CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcc-cCCCcc
Q 020238 87 SSA---GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEA 162 (329)
Q Consensus 87 ~~~---~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~ 162 (329)
.+. ..|...+.++|.+..+...+.-++.+++|+++.|.+.... .+..+++|+.|++++|... .+|.. ...+.
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK- 233 (1096)
T ss_pred ccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-
Confidence 222 4566677778888777777888899999999998765432 5778899999999985443 44432 23343
Q ss_pred CcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCc
Q 020238 163 LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 163 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~ 226 (329)
|+.|.+.+|.++.+.. +.++.+|+.||+++|-+.+.. ..+..+..|+.|.|.||.+-
T Consensus 234 L~~L~lrnN~l~tL~g-------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRG-------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhhhh-------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888998888776532 456788899999998776532 23556777888888888765
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=4.3e-09 Score=95.87 Aligned_cols=125 Identities=26% Similarity=0.238 Sum_probs=82.0
Q ss_pred CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238 114 GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT 193 (329)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~ 193 (329)
.|...+.++|. +..+...+.-++.++.|++++|...... .+..++.|++|+++.|.++.+|.-- -.+|. |+
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~-----~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLS-----MVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccc-----hhhhh-he
Confidence 34444555543 3334445555777888888886555432 5667788888888888877666422 12343 88
Q ss_pred EEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC--hhhhcCCccceeccccccc
Q 020238 194 SLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCER 248 (329)
Q Consensus 194 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~ 248 (329)
.|.+++|.++.+- .+.++.+|+.||++.|-+.+.. ..++.+..|+.|+|.||+.
T Consensus 236 ~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8888888777653 3567788888888888766333 3566777788888888764
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.37 E-value=3.4e-06 Score=73.94 Aligned_cols=71 Identities=24% Similarity=0.488 Sum_probs=38.3
Q ss_pred CCCcccEEeecCCCCCCCCcccCCCCCccEEEecC-ccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEe
Q 020238 65 RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG-TAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY 143 (329)
Q Consensus 65 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 143 (329)
.+.+++.|++++| .+..+|.+ .++|+.|.+++ ..+..+|..+ .++|++|.+++|..+..+| .+|+.|+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEE
Confidence 3566777777776 33444421 14577777764 3444444433 2467777777764444333 2355555
Q ss_pred ccC
Q 020238 144 LRW 146 (329)
Q Consensus 144 l~~ 146 (329)
+..
T Consensus 119 L~~ 121 (426)
T PRK15386 119 IKG 121 (426)
T ss_pred eCC
Confidence 543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=4.6e-08 Score=71.15 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=78.0
Q ss_pred CcEEeccCCCCCC--CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCcc
Q 020238 139 LNSIYLRWCSSLK--SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL 216 (329)
Q Consensus 139 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 216 (329)
+..++++.|..+. ..+..+.+...|...++++|.+.++|..+ -..++.++.+++.+|.++++|..+..++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf-----t~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF-----TIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH-----hhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 4556666665542 22233455567888888888888888776 3456788888898888888888888889999
Q ss_pred EEEcCCCcCccCChhhhcCCccceecccccc
Q 020238 217 ELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 217 ~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
.|+++.|.+...|+.+..+.++..|+..++.
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 9999999888888777777777777776643
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=1.3e-06 Score=51.31 Aligned_cols=39 Identities=36% Similarity=0.491 Sum_probs=26.2
Q ss_pred CccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238 191 NLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP 229 (329)
Q Consensus 191 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~ 229 (329)
+|++|++++|+++++|..++.+++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 567777777777777666777777777777777776554
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1.1e-06 Score=72.45 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=36.1
Q ss_pred CCccEEEecCcccc---ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCC-CCcccCCCccCcE
Q 020238 90 GNIEVMYLNGTAIE---ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKS-LPNELGNLEALNS 165 (329)
Q Consensus 90 ~~L~~L~l~~~~i~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 165 (329)
..++.+++.+|.++ ++...+.++|.|+.|+++.|+....+..--....+|++|.+.+...... ....+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 44555555555555 2233344555566666555554332211001234555555544322211 1122334455555
Q ss_pred EeccCcc
Q 020238 166 LNAEGTA 172 (329)
Q Consensus 166 L~l~~~~ 172 (329)
|.++.|.
T Consensus 151 lHmS~N~ 157 (418)
T KOG2982|consen 151 LHMSDNS 157 (418)
T ss_pred hhhccch
Confidence 5555553
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=4.2e-06 Score=68.20 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=109.5
Q ss_pred chhhhcCCCCCEEEcCCCCCcccCCc----cccCCCCCcEEeccCCCCCCCCC-------------cccCCCccCcEEec
Q 020238 106 PSSIECLSGLSALYLDHCKRLKSLPS----SLCKLKSLNSIYLRWCSSLKSLP-------------NELGNLEALNSLNA 168 (329)
Q Consensus 106 ~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l 168 (329)
.+.+.+||+|+..+++.|.+....|. .+++-+.|..|.+++|....... .....-+.|+.+..
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 45577899999999999988766554 35677889999998865432211 11234578999999
Q ss_pred cCccccccChhhhhccccCCCCCccEEEcCCCCCCC--c----chhhcCCCCccEEEcCCCcCc-----cCChhhhcCCc
Q 020238 169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--L----PENLGQLSLLLELYLEKNNFE-----RLPESIIHLSK 237 (329)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~----~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~~~~ 237 (329)
..|++...+....... +..-.+|..+.+..|.+.. + ...+..+++|+.|++..|-++ .+..++...+.
T Consensus 165 grNRlengs~~~~a~~-l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 165 GRNRLENGSKELSAAL-LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred ccchhccCcHHHHHHH-HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 9998876554432211 2223688899999998874 1 223456889999999999776 22245566777
Q ss_pred cceecccccccccc--------cC-CCCCCccEEeccCCCC
Q 020238 238 LAYLKLSYCERLQS--------LP-KLPCNLSELDAHHCTA 269 (329)
Q Consensus 238 L~~L~l~~~~~l~~--------~~-~~~~~L~~L~l~~c~~ 269 (329)
|+.|.+..|-.-.. +. ...|+|..|...++..
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 89999988753311 11 2446777777777754
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=4.3e-06 Score=79.16 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=7.8
Q ss_pred CCCccEEEcCCCcCc
Q 020238 212 LSLLLELYLEKNNFE 226 (329)
Q Consensus 212 ~~~L~~L~l~~~~i~ 226 (329)
+|+|+-||.+++.+.
T Consensus 249 LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 249 LPELRFLDCSGTDIN 263 (699)
T ss_pred CccccEEecCCcchh
Confidence 455555555555444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=2.8e-05 Score=60.71 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=85.9
Q ss_pred ceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCC-CCccEEEe
Q 020238 19 LKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSA-GNIEVMYL 97 (329)
Q Consensus 19 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l 97 (329)
=+++++.+.+ +..+.. .-.-..+...+|+++|.+... ..+.+++.|..|.+++|.+...-|.+..+ ++|+.|.+
T Consensus 21 e~e~~LR~lk-ip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLK-IPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccc-ccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 3455666554 222222 112245778889998875542 23567888999999998877766777666 88999999
Q ss_pred cCccccccc--hhhhcCCCCCEEEcCCCCCcccC---CccccCCCCCcEEeccCC
Q 020238 98 NGTAIEELP--SSIECLSGLSALYLDHCKRLKSL---PSSLCKLKSLNSIYLRWC 147 (329)
Q Consensus 98 ~~~~i~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~ 147 (329)
.+|++..+. ..+..+|.|++|.+-+|.....- --.+..+++|+.||+..-
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999888543 34677899999999888765432 234677899999998763
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.92 E-value=9.6e-07 Score=81.34 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=48.1
Q ss_pred hcCCCCccEEEcCCCcCccCC--hhhhcCCccceecccccccccccCCCCCCccEEeccCCCCCcCCCCCCCC--CCCCc
Q 020238 209 LGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFP--SRDPQ 284 (329)
Q Consensus 209 ~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~~L~ 284 (329)
...++.++.+.+..+.+.... ..+..|+.|. ..+..+. ....+++.|.++.|...+.-...... +..+.
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~ 430 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLK 430 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh------ccCCccceEecccCccccccchHHHhhhhhccc
Confidence 455677777776666533221 2333344442 2211110 11123788888888766543211111 55678
Q ss_pred EEEcCCCcccchhHHHHHhh
Q 020238 285 YFDLRNNLKLDRNEIREILE 304 (329)
Q Consensus 285 ~L~i~~~~~l~~~~~~~~~~ 304 (329)
.+++++|+.++......+..
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 431 DLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred cCCccCcccccchhhhhhhc
Confidence 88888988888777665444
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.88 E-value=2.8e-06 Score=78.26 Aligned_cols=236 Identities=25% Similarity=0.302 Sum_probs=102.3
Q ss_pred CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCC-CCCcccC----ccccCCCcccEEeecCCCCCCCC--cccC
Q 020238 15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNC-KSLRILP----PGIFRLEFLKELDLWGCSKLKTL--PEIS 87 (329)
Q Consensus 15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~--~~~~ 87 (329)
.++.|+.+.+.+|..+.+.........+++|++|++++| ......+ .....+++|+.++++++....+. ..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 466666666666665555332225566667777776652 2111111 12233566666666665532221 1122
Q ss_pred C-CCCccEEEecCcc-cc--ccchhhhcCCCCCEEEcCCCCCccc--CCccccCCCCCcEEeccCCCCCCCCCcccCCCc
Q 020238 88 S-AGNIEVMYLNGTA-IE--ELPSSIECLSGLSALYLDHCKRLKS--LPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLE 161 (329)
Q Consensus 88 ~-~~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 161 (329)
. +++|+.|.+..+. ++ .+......++.|++|++++|..... +.....++++++.+.+..... +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 1 3455555544333 33 2222334455555555555544321 111122344443333322111 12
Q ss_pred cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc--chhhcCCCCccEEEcCCCcCccCChhhhcCCccc
Q 020238 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL--PENLGQLSLLLELYLEKNNFERLPESIIHLSKLA 239 (329)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~ 239 (329)
.++.+.+.+...... .... ......++.++.+.+.++...+. ...+..|+.|. ..+..+ ......++
T Consensus 336 ~l~~~~l~~~~~~~~-d~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~--------~~~~~~l~ 404 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTS-DDLA-ELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR--------LCRSDSLR 404 (482)
T ss_pred cHHHHHHHHhhccCc-hhHh-HHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH--------hccCCccc
Confidence 222222222111000 0000 01145677888888777764442 23445566552 211111 11112266
Q ss_pred eecccccccccccC-----CCCCCccEEeccCCCCCc
Q 020238 240 YLKLSYCERLQSLP-----KLPCNLSELDAHHCTALE 271 (329)
Q Consensus 240 ~L~l~~~~~l~~~~-----~~~~~L~~L~l~~c~~l~ 271 (329)
.|++..|...+... .....++.+++.+|+.++
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 66666665543322 113456666666666554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=7.1e-06 Score=77.76 Aligned_cols=131 Identities=21% Similarity=0.168 Sum_probs=72.9
Q ss_pred ccCcEEeccCCCCCcccC-ccc-cCCCcccEEeecCCCCCC-CCcc-cCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238 43 DKLVNLNLNNCKSLRILP-PGI-FRLEFLKELDLWGCSKLK-TLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL 118 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L 118 (329)
.+|++|+++|......-+ ..+ ..+|.|+.|.+++-.+.. ++.. ..++|+|..||++++.++.+ .+++.+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567777777644332111 112 236777777777644322 2222 23347777777777777765 566777777777
Q ss_pred EcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCC--C----cccCCCccCcEEeccCcccc
Q 020238 119 YLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSL--P----NELGNLEALNSLNAEGTAIR 174 (329)
Q Consensus 119 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~ 174 (329)
.+.+=.+.. ..-..+..+++|+.||++.-...... . +-...+++|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 776633322 11123556777777777763322211 0 11234677777877776654
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=5.1e-06 Score=60.70 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=78.0
Q ss_pred cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcC-CCCccEEEcCCCcCccCChhhhcCCccce
Q 020238 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQ-LSLLLELYLEKNNFERLPESIIHLSKLAY 240 (329)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~i~~~~~~l~~~~~L~~ 240 (329)
.+..++++.+.+..++..... +.....|...++++|.+.++|..+.. ++.+..|++++|.|+++|..++.++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~---l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYM---LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHH---HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 355677777776655544333 34566788899999999999887654 77999999999999999988999999999
Q ss_pred ecccccccccccCCC--CCCccEEeccCCCCCcCCCCC
Q 020238 241 LKLSYCERLQSLPKL--PCNLSELDAHHCTALESSPGL 276 (329)
Q Consensus 241 L~l~~~~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~ 276 (329)
|+++.|+........ +-++-.|+..++. +..++..
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 999998754322222 2344444444443 3334433
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=7.1e-05 Score=58.49 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=75.0
Q ss_pred CcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhc-CCCCCEEEcCCCCCcccC-CccccCCCCCcEEec
Q 020238 67 EFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIEC-LSGLSALYLDHCKRLKSL-PSSLCKLKSLNSIYL 144 (329)
Q Consensus 67 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l 144 (329)
.....+|+++|.+ ...+.+..+++|..|.+.+|.|..+.+.+.. +++|..|.+.+|.+...- -..+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccch-hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4567788888654 3566677778899999999999877666654 678999999988764421 133567888999988
Q ss_pred cCCCCCCCCC---cccCCCccCcEEeccCccc
Q 020238 145 RWCSSLKSLP---NELGNLEALNSLNAEGTAI 173 (329)
Q Consensus 145 ~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l 173 (329)
-+|+....-- .-+..+++|+.|++.+-..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8876554311 2356788899998876543
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=5.3e-05 Score=44.40 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=21.8
Q ss_pred CccEEEecCccccccchhhhcCCCCCEEEcCCCCC
Q 020238 91 NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKR 125 (329)
Q Consensus 91 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 125 (329)
+|++|++++|.++.+++.++++++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666666666677777777766654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=2.3e-05 Score=64.22 Aligned_cols=95 Identities=31% Similarity=0.351 Sum_probs=63.8
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC--hhhhcCCcc
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP--ESIIHLSKL 238 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L 238 (329)
.+.+.|+.-|+++.++. + ...++.|+.|.|+-|+++.+. .+..|+.|++|+|+.|.|.++. ..+.++|+|
T Consensus 19 ~~vkKLNcwg~~L~DIs--i-----c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--I-----CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCCccHHH--H-----HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 34566666666666542 2 345778888888888888764 3667888888888888877655 456778888
Q ss_pred ceecccccccccccC--------CCCCCccEEe
Q 020238 239 AYLKLSYCERLQSLP--------KLPCNLSELD 263 (329)
Q Consensus 239 ~~L~l~~~~~l~~~~--------~~~~~L~~L~ 263 (329)
+.|.|..|+--..-+ ..+|+|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888776543333 1345666654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00042 Score=56.47 Aligned_cols=80 Identities=25% Similarity=0.238 Sum_probs=38.7
Q ss_pred CCCccEEEcCCC--CCCC-cchhhcCCCCccEEEcCCCcCccC--ChhhhcCCccceeccccccccc------ccCCCCC
Q 020238 189 LQNLTSLYLTDC--GITE-LPENLGQLSLLLELYLEKNNFERL--PESIIHLSKLAYLKLSYCERLQ------SLPKLPC 257 (329)
Q Consensus 189 ~~~L~~L~l~~~--~l~~-~~~~~~~~~~L~~L~l~~~~i~~~--~~~l~~~~~L~~L~l~~~~~l~------~~~~~~~ 257 (329)
+++|+.|.++.| .+.. ++..+..+|+|+++++++|+|..+ ...+..+.+|..|++.+|.... .+...++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 455555555555 2222 333344456666666666655421 1234455556666666554322 1112345
Q ss_pred CccEEeccCCC
Q 020238 258 NLSELDAHHCT 268 (329)
Q Consensus 258 ~L~~L~l~~c~ 268 (329)
+|..|+-.++.
T Consensus 144 ~L~~LD~~dv~ 154 (260)
T KOG2739|consen 144 SLKYLDGCDVD 154 (260)
T ss_pred hhccccccccC
Confidence 55555554443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00048 Score=56.14 Aligned_cols=106 Identities=23% Similarity=0.191 Sum_probs=63.7
Q ss_pred cCcccCcEEeccCCCCCcccCccccCCCcccEEeecCC--CCCCCCcccCC-CCCccEEEecCcccccc--chhhhcCCC
Q 020238 40 LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGC--SKLKTLPEISS-AGNIEVMYLNGTAIEEL--PSSIECLSG 114 (329)
Q Consensus 40 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~-~~~L~~L~l~~~~i~~~--~~~~~~l~~ 114 (329)
.....|+.+.+.++..++. ..+-.+++|+.|.++.| +....++.... +|+|+++.+++|++..+ ...+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3445566666666554332 12345678888888887 33344443322 38888888888887632 223566777
Q ss_pred CCEEEcCCCCCcccC---CccccCCCCCcEEeccCC
Q 020238 115 LSALYLDHCKRLKSL---PSSLCKLKSLNSIYLRWC 147 (329)
Q Consensus 115 L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~ 147 (329)
|..|++.+|....-. ...|.-+++|.+|+-.+.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 888888887654311 123555777877776553
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.98 E-value=0.0061 Score=45.08 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=18.9
Q ss_pred hcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEecc
Q 020238 110 ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAE 169 (329)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 169 (329)
..+.+|+.+.+.. .........|.++++++.+.+.+ .....-...|..+.+++.+.+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-NLTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-TTSCE-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECC-CeeEeChhhcccccccccccccc-cccccceeeeeccccccccccc
Confidence 3444555555443 22222223344444555555543 1111111234444445555543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=6.4e-05 Score=61.70 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=57.2
Q ss_pred ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccc--hhhhcCCCCCEEEc
Q 020238 43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSGLSALYL 120 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l 120 (329)
.+.+.|+..||.+... .....|+.|++|.|+-|.+ ..+..+..+.+|+.|+|..|.|.++. .++.++|+|+.|++
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4555666666654432 1234566666666666443 34445555666777777777666443 35667788888888
Q ss_pred CCCCCcccCC-----ccccCCCCCcEEe
Q 020238 121 DHCKRLKSLP-----SSLCKLKSLNSIY 143 (329)
Q Consensus 121 ~~~~~~~~~~-----~~~~~l~~L~~L~ 143 (329)
..|.=....+ ..+.-+|+|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 7765443322 2345567777665
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.67 E-value=0.013 Score=43.24 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=6.0
Q ss_pred cccCcccCcEEeccC
Q 020238 38 LTLHLDKLVNLNLNN 52 (329)
Q Consensus 38 ~~~~~~~L~~L~l~~ 52 (329)
.+.++++|+.+.+.+
T Consensus 30 ~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT-SEEEESS
T ss_pred hcccccccccccccc
Confidence 344444455555444
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00067 Score=53.18 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=62.7
Q ss_pred CccEEEcCCCcCc-cCChhhhcCCccceecccccccccc-----cCCCCCCccEEeccCCCCCcCCC-CCCCCCCCCcEE
Q 020238 214 LLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQS-----LPKLPCNLSELDAHHCTALESSP-GLVFPSRDPQYF 286 (329)
Q Consensus 214 ~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L 286 (329)
.++.++.+++.|. +-.+.+.+++.++.|.+.+|..+.+ +....++|+.|++++|+.+++.. .++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3677788887776 4446778888888888888876643 44667899999999999987653 334566788888
Q ss_pred EcCCCcccchhH
Q 020238 287 DLRNNLKLDRNE 298 (329)
Q Consensus 287 ~i~~~~~l~~~~ 298 (329)
.|.+.+.+....
T Consensus 182 ~l~~l~~v~~~e 193 (221)
T KOG3864|consen 182 HLYDLPYVANLE 193 (221)
T ss_pred HhcCchhhhchH
Confidence 888877765443
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.22 E-value=0.0053 Score=31.25 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCCCcEEEcCCCcccchhHHHHHhh
Q 020238 280 SRDPQYFDLRNNLKLDRNEIREILE 304 (329)
Q Consensus 280 ~~~L~~L~i~~~~~l~~~~~~~~~~ 304 (329)
+++|++|++++|+++++.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4679999999999999999887653
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0041 Score=30.27 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=7.6
Q ss_pred ccEEEcCCCcCccCCh
Q 020238 215 LLELYLEKNNFERLPE 230 (329)
Q Consensus 215 L~~L~l~~~~i~~~~~ 230 (329)
|+.|++++|+++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4445555554444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.24 E-value=0.013 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=4.8
Q ss_pred CccEEEcCCCcCcc
Q 020238 214 LLLELYLEKNNFER 227 (329)
Q Consensus 214 ~L~~L~l~~~~i~~ 227 (329)
+|+.|++++|++++
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.0084 Score=29.12 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=11.3
Q ss_pred ccEEEcCCCCCCCcchhhc
Q 020238 192 LTSLYLTDCGITELPENLG 210 (329)
Q Consensus 192 L~~L~l~~~~l~~~~~~~~ 210 (329)
|++|++++|.++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5666666666666655443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.016 Score=45.69 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=46.9
Q ss_pred cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC-CCCC--cchhhcCCCCccEEEcCCC-cCc-cCChhhhcCC
Q 020238 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC-GITE--LPENLGQLSLLLELYLEKN-NFE-RLPESIIHLS 236 (329)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~~~L~~L~l~~~-~i~-~~~~~l~~~~ 236 (329)
.++.++.+++.|..... ..+..++.++.|.+.+| ++.+ +...-...++|+.|++++| +|+ .-...+..++
T Consensus 102 ~IeaVDAsds~I~~eGl-----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-----EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHH-----HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 45666666665553321 12456677777777776 3333 2111224677888888877 676 3335667777
Q ss_pred ccceecccc
Q 020238 237 KLAYLKLSY 245 (329)
Q Consensus 237 ~L~~L~l~~ 245 (329)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 777777765
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.37 E-value=0.00053 Score=62.44 Aligned_cols=181 Identities=26% Similarity=0.260 Sum_probs=104.9
Q ss_pred CcEEeccCCCCCcc----cCccccCCCcccEEeecCCCCCCCCc-----ccCCC-CCccEEEecCcccc-----ccchhh
Q 020238 45 LVNLNLNNCKSLRI----LPPGIFRLEFLKELDLWGCSKLKTLP-----EISSA-GNIEVMYLNGTAIE-----ELPSSI 109 (329)
Q Consensus 45 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~i~-----~~~~~~ 109 (329)
+..+.+.+|.+... +..++..+++|+.|++++|.+...-. .+... ..+++|.+..+.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777765442 34455667788888888877663211 12222 44556666666555 234455
Q ss_pred hcCCCCCEEEcCCCCCccc----CCcccc----CCCCCcEEeccCCCCCCC----CCcccCCCcc-CcEEeccCcccccc
Q 020238 110 ECLSGLSALYLDHCKRLKS----LPSSLC----KLKSLNSIYLRWCSSLKS----LPNELGNLEA-LNSLNAEGTAIREV 176 (329)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~----~~~~~~----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~l~~~~l~~~ 176 (329)
.....++.+++..|.+... ++..+. ...++++|.+.+|..... +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5677778888877766421 222233 356677888877665532 1122333444 55577777776643
Q ss_pred ChhhhhccccCCC-CCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc
Q 020238 177 PLSIVRLNNFDGL-QNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 177 ~~~~~~~~~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~ 226 (329)
.... -.+.+..+ ..++++++.+|++++ +...+..++.++.+.+..|.+.
T Consensus 249 g~~~-L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEK-LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHH-HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 1110 00113334 567888888887775 4555667778888888888765
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.25 E-value=0.0008 Score=61.31 Aligned_cols=179 Identities=20% Similarity=0.201 Sum_probs=98.2
Q ss_pred ccEEeecCCCCCCCCc-----ccCCCCCccEEEecCccccc-----cchhhhcC-CCCCEEEcCCCCCccc----CCccc
Q 020238 69 LKELDLWGCSKLKTLP-----EISSAGNIEVMYLNGTAIEE-----LPSSIECL-SGLSALYLDHCKRLKS----LPSSL 133 (329)
Q Consensus 69 L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~i~~-----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~ 133 (329)
+..+++.+|.+..... .+...+.|+.|++++|.+.. +...+... ..+++|++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777776554322 23444777778888777761 11122222 4566677766665433 23445
Q ss_pred cCCCCCcEEeccCCCCCCC----CCcc----cCCCccCcEEeccCccccccChhhhhccccCCCCC-ccEEEcCCCCCCC
Q 020238 134 CKLKSLNSIYLRWCSSLKS----LPNE----LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQN-LTSLYLTDCGITE 204 (329)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~----~~~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~ 204 (329)
.....++.+++..|..... .+.. +....++++|+++++.+.......... .+...+. +..+++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~-~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDE-VLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHH-HHhccchhhHHHHHHhcCcch
Confidence 5566777777777655321 1122 223556777777777665221111110 0233333 5557777776664
Q ss_pred -----cchhhcCC-CCccEEEcCCCcCc-----cCChhhhcCCccceeccccccc
Q 020238 205 -----LPENLGQL-SLLLELYLEKNNFE-----RLPESIIHLSKLAYLKLSYCER 248 (329)
Q Consensus 205 -----~~~~~~~~-~~L~~L~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~~ 248 (329)
+...+... +.++.++++.|.|+ .+.+.+..++.++.+.++.|+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 23334444 56677777777765 2334555666777777776553
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.25 E-value=0.16 Score=25.61 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=11.0
Q ss_pred CCccEEEcCCCcCccCCh
Q 020238 213 SLLLELYLEKNNFERLPE 230 (329)
Q Consensus 213 ~~L~~L~l~~~~i~~~~~ 230 (329)
++|+.|++++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666666654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.25 E-value=0.16 Score=25.61 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=11.0
Q ss_pred CCccEEEcCCCcCccCCh
Q 020238 213 SLLLELYLEKNNFERLPE 230 (329)
Q Consensus 213 ~~L~~L~l~~~~i~~~~~ 230 (329)
++|+.|++++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666666654
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.62 E-value=0.47 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=14.1
Q ss_pred CCCcEEEcCCCcccchhHHHHH
Q 020238 281 RDPQYFDLRNNLKLDRNEIREI 302 (329)
Q Consensus 281 ~~L~~L~i~~~~~l~~~~~~~~ 302 (329)
+.|++|+|++|. +++.....+
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHh
Confidence 568888888887 777776665
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.30 E-value=0.83 Score=23.07 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=12.8
Q ss_pred CCccEEEcCCCcCccCCh
Q 020238 213 SLLLELYLEKNNFERLPE 230 (329)
Q Consensus 213 ~~L~~L~l~~~~i~~~~~ 230 (329)
+.|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457777777777777764
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.82 E-value=0.86 Score=41.76 Aligned_cols=75 Identities=20% Similarity=0.110 Sum_probs=46.6
Q ss_pred CCCCccEEEcCCCCCCC---cchhhcCCCCccEEEcCCC--cCccCChhhh--cCCccceecccccccccccC-------
Q 020238 188 GLQNLTSLYLTDCGITE---LPENLGQLSLLLELYLEKN--NFERLPESII--HLSKLAYLKLSYCERLQSLP------- 253 (329)
Q Consensus 188 ~~~~L~~L~l~~~~l~~---~~~~~~~~~~L~~L~l~~~--~i~~~~~~l~--~~~~L~~L~l~~~~~l~~~~------- 253 (329)
+.+.+..+.+++|.+.. +.......|.|+.|+|++| .+...+ .+. ....|++|-+.||+.-+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 45677778888886655 3333445788888888888 333222 222 23467788888877654433
Q ss_pred ---CCCCCccEEe
Q 020238 254 ---KLPCNLSELD 263 (329)
Q Consensus 254 ---~~~~~L~~L~ 263 (329)
+.+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 4567777664
No 84
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=80.33 E-value=0.96 Score=21.25 Aligned_cols=13 Identities=38% Similarity=1.066 Sum_probs=11.0
Q ss_pred CCCCchhhhhhhc
Q 020238 1 MPHGNIQQLWDSV 13 (329)
Q Consensus 1 l~~~~~~~l~~~~ 13 (329)
|++|+++++|++.
T Consensus 7 m~~S~lekLW~G~ 19 (20)
T PF07725_consen 7 MPYSKLEKLWEGV 19 (20)
T ss_pred CCCCChHHhcCcc
Confidence 5789999999875
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.76 E-value=0.081 Score=42.85 Aligned_cols=84 Identities=13% Similarity=-0.014 Sum_probs=46.0
Q ss_pred cCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEe
Q 020238 64 FRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY 143 (329)
Q Consensus 64 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 143 (329)
..+...+.||++.+.....-..+.-+..+..|+++.+.+..+|..+.....+++++...|. .+..|..+...+++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhh
Confidence 3445555666665543332223333345556666666666666666666666666655544 344555556666666666
Q ss_pred ccCCC
Q 020238 144 LRWCS 148 (329)
Q Consensus 144 l~~~~ 148 (329)
..++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 65543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.26 E-value=3.2 Score=20.99 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=9.4
Q ss_pred CCccEEEcCCCcCcc
Q 020238 213 SLLLELYLEKNNFER 227 (329)
Q Consensus 213 ~~L~~L~l~~~~i~~ 227 (329)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666777666653
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.68 E-value=0.093 Score=42.53 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=22.9
Q ss_pred ccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccc
Q 020238 192 LTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245 (329)
Q Consensus 192 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~ 245 (329)
++.++++.|.+.-+|..+++...++.+++..|..+..|.+....+.++.+++.+
T Consensus 67 ~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 67 LVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred HHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 333444444443344444444444444444444444444444444444444443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.22 E-value=3.9 Score=37.74 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=16.0
Q ss_pred CcccCcEEeccCCCCCc--ccCccccCCCcccEEeecCC
Q 020238 41 HLDKLVNLNLNNCKSLR--ILPPGIFRLEFLKELDLWGC 77 (329)
Q Consensus 41 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~ 77 (329)
+.|.+..+++++|+... .+.......|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554322 11111122455555555554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.76 E-value=6.8 Score=20.01 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=7.1
Q ss_pred CccEEEcCCCCCC
Q 020238 191 NLTSLYLTDCGIT 203 (329)
Q Consensus 191 ~L~~L~l~~~~l~ 203 (329)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
Done!