Query 020238
Match_columns 329
No_of_seqs 205 out of 3281
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 13:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 100.0 1.4E-30 4.9E-35 236.2 21.5 291 1-298 37-412 (455)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-30 4.5E-35 250.7 21.1 136 39-174 414-551 (768)
3 4eco_A Uncharacterized protein 100.0 1.5E-30 5.3E-35 245.0 20.4 279 9-294 239-600 (636)
4 3rgz_A Protein brassinosteroid 100.0 3.4E-30 1.2E-34 247.7 19.2 231 11-248 312-550 (768)
5 3t6q_A CD180 antigen; protein- 100.0 2.9E-29 9.9E-34 235.6 25.1 295 1-304 261-570 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 6.3E-30 2.2E-34 245.7 20.5 280 9-294 481-840 (876)
7 4fmz_A Internalin; leucine ric 100.0 9.7E-29 3.3E-33 216.4 25.4 268 2-292 52-344 (347)
8 4eco_A Uncharacterized protein 100.0 6.3E-30 2.1E-34 240.8 18.9 283 1-295 312-633 (636)
9 4ecn_A Leucine-rich repeat pro 100.0 4.5E-29 1.5E-33 239.8 23.7 281 3-291 434-786 (876)
10 1ogq_A PGIP-2, polygalacturona 100.0 8.7E-30 3E-34 219.7 16.1 248 17-272 50-306 (313)
11 2id5_A Lingo-1, leucine rich r 100.0 1.9E-28 6.4E-33 223.7 25.5 292 3-299 20-338 (477)
12 3t6q_A CD180 antigen; protein- 100.0 1.5E-28 5.3E-33 230.7 25.6 241 1-248 40-337 (606)
13 2id5_A Lingo-1, leucine rich r 100.0 1E-28 3.6E-33 225.3 23.4 261 1-270 39-333 (477)
14 2ft3_A Biglycan; proteoglycan, 100.0 2E-28 6.7E-33 213.1 23.6 274 3-292 42-331 (332)
15 1xku_A Decorin; proteoglycan, 100.0 9.1E-28 3.1E-32 208.7 27.1 275 2-291 39-329 (330)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-28 4.9E-33 226.8 21.1 119 1-125 7-127 (520)
17 3v47_A TOLL-like receptor 5B a 100.0 3E-28 1E-32 220.9 21.8 285 2-292 18-382 (455)
18 4fmz_A Internalin; leucine ric 100.0 6.3E-28 2.1E-32 211.2 23.1 265 13-292 40-322 (347)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 3.9E-32 222.7 25.0 119 1-125 38-158 (562)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-27 7.7E-32 218.8 25.5 162 134-302 321-489 (520)
21 2z81_A CD282 antigen, TOLL-lik 100.0 7.9E-28 2.7E-32 223.2 22.1 99 1-101 33-134 (549)
22 3o6n_A APL1; leucine-rich repe 100.0 1.4E-27 4.7E-32 212.4 22.6 274 3-294 54-352 (390)
23 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-27 9.1E-32 214.2 24.0 201 1-229 49-249 (457)
24 3o6n_A APL1; leucine-rich repe 100.0 1.7E-27 6E-32 211.7 22.3 258 1-270 76-352 (390)
25 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-27 1.3E-31 221.2 25.7 125 1-127 39-167 (606)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-27 2.4E-31 217.4 26.2 164 134-304 350-520 (562)
27 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-27 7.4E-32 222.9 22.8 286 4-304 272-568 (606)
28 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-28 6.3E-33 211.4 14.2 242 2-253 58-308 (313)
29 2z81_A CD282 antigen, TOLL-lik 100.0 5E-28 1.7E-32 224.6 17.7 161 2-166 13-177 (549)
30 2z63_A TOLL-like receptor 4, v 100.0 4.4E-27 1.5E-31 219.2 21.4 126 1-128 35-164 (570)
31 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-27 2.9E-31 226.4 23.9 290 1-292 31-373 (844)
32 3oja_B Anopheles plasmodium-re 100.0 6.6E-27 2.3E-31 218.9 22.2 273 2-292 59-356 (597)
33 1o6v_A Internalin A; bacterial 100.0 3.1E-26 1.1E-30 208.3 25.5 227 2-247 54-320 (466)
34 1xku_A Decorin; proteoglycan, 100.0 8E-26 2.7E-30 196.4 26.7 260 18-294 32-306 (330)
35 1o6v_A Internalin A; bacterial 100.0 2.5E-26 8.4E-31 208.9 24.4 260 15-291 44-341 (466)
36 3oja_B Anopheles plasmodium-re 99.9 1.8E-26 6E-31 216.0 22.5 271 15-293 49-336 (597)
37 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-26 1.5E-30 198.2 23.1 274 3-294 13-307 (332)
38 2z63_A TOLL-like receptor 4, v 99.9 2.1E-26 7.2E-31 214.6 21.9 139 157-299 392-536 (570)
39 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.1E-31 201.2 18.1 218 67-291 81-311 (328)
40 2z80_A TOLL-like receptor 2, v 99.9 4.2E-27 1.4E-31 206.4 14.4 260 2-271 39-315 (353)
41 1ziw_A TOLL-like receptor 3; i 99.9 9.7E-26 3.3E-30 214.4 24.1 287 2-292 12-364 (680)
42 2z66_A Variable lymphocyte rec 99.9 2E-26 6.8E-31 198.1 17.4 220 43-268 28-259 (306)
43 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-25 3.9E-30 203.5 22.6 249 13-292 38-297 (457)
44 1ziw_A TOLL-like receptor 3; i 99.9 4.7E-25 1.6E-29 209.7 26.2 239 1-246 56-363 (680)
45 4fcg_A Uncharacterized protein 99.9 8.9E-26 3E-30 195.8 19.1 216 43-267 81-311 (328)
46 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4.1E-32 206.7 7.3 281 1-298 17-303 (317)
47 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-25 1.4E-29 208.1 24.7 115 189-304 468-590 (635)
48 3j0a_A TOLL-like receptor 5; m 99.9 3.7E-25 1.2E-29 214.9 23.0 285 2-292 12-349 (844)
49 3zyi_A Leucine-rich repeat-con 99.9 6.6E-25 2.3E-29 198.8 22.9 233 4-247 64-301 (452)
50 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-25 1.2E-29 188.4 19.8 203 42-249 31-238 (285)
51 3zyj_A Leucine-rich repeat-con 99.9 1.2E-24 4E-29 196.5 22.6 235 3-248 52-291 (440)
52 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-25 1E-29 188.9 17.5 243 2-253 19-265 (285)
53 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-24 1.3E-28 199.2 26.1 250 1-293 47-296 (622)
54 2z66_A Variable lymphocyte rec 99.9 1E-24 3.5E-29 187.5 19.7 236 3-247 16-259 (306)
55 1jl5_A Outer protein YOPM; leu 99.9 1.2E-24 4E-29 196.7 19.7 240 1-268 18-288 (454)
56 2z80_A TOLL-like receptor 2, v 99.9 3.2E-24 1.1E-28 188.1 21.6 274 14-298 28-318 (353)
57 1jl5_A Outer protein YOPM; leu 99.9 8.1E-24 2.8E-28 191.2 24.6 252 17-293 131-408 (454)
58 3zyi_A Leucine-rich repeat-con 99.9 1E-23 3.6E-28 190.9 24.4 236 20-268 57-301 (452)
59 3o53_A Protein LRIM1, AGAP0063 99.9 7.9E-27 2.7E-31 201.6 2.7 236 18-269 11-249 (317)
60 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 189.9 23.5 237 19-268 45-290 (440)
61 3oja_A Leucine-rich immune mol 99.9 1.8E-25 6.3E-30 203.8 10.8 235 14-265 31-270 (487)
62 1wwl_A Monocyte differentiatio 99.9 2.7E-25 9.1E-30 191.6 6.0 241 40-292 40-307 (312)
63 1wwl_A Monocyte differentiatio 99.9 1.7E-25 5.7E-30 192.9 4.7 246 14-270 40-309 (312)
64 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-22 9.4E-27 188.9 25.0 122 1-124 59-184 (635)
65 1p9a_G Platelet glycoprotein I 99.9 1.8E-22 6.1E-27 171.8 20.8 204 12-226 5-208 (290)
66 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-25 5.2E-30 203.5 0.9 295 8-304 47-420 (461)
67 3oja_A Leucine-rich immune mol 99.9 1.7E-24 6E-29 197.3 7.3 236 39-288 30-269 (487)
68 2z62_A TOLL-like receptor 4, v 99.9 6.1E-22 2.1E-26 167.6 19.4 204 43-249 28-237 (276)
69 2z62_A TOLL-like receptor 4, v 99.9 4.6E-22 1.6E-26 168.3 17.7 214 3-226 16-237 (276)
70 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-24 4.1E-29 197.6 -0.3 299 2-303 11-362 (461)
71 1p9a_G Platelet glycoprotein I 99.9 2.3E-21 7.7E-26 165.1 19.9 202 38-249 5-208 (290)
72 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-20 4.8E-25 175.4 26.4 234 18-295 41-274 (622)
73 3rfs_A Internalin B, repeat mo 99.9 3.4E-22 1.2E-26 168.7 13.9 204 38-255 36-241 (272)
74 2o6q_A Variable lymphocyte rec 99.9 9.4E-21 3.2E-25 159.7 21.8 200 17-226 16-218 (270)
75 2o6q_A Variable lymphocyte rec 99.9 1.6E-20 5.5E-25 158.3 22.7 199 43-249 16-218 (270)
76 3rfs_A Internalin B, repeat mo 99.9 6.8E-21 2.3E-25 160.7 18.9 228 41-281 17-246 (272)
77 1h6u_A Internalin H; cell adhe 99.9 3E-21 1E-25 165.8 16.9 190 41-247 39-228 (308)
78 2xwt_C Thyrotropin receptor; s 99.9 5.9E-21 2E-25 158.0 16.6 58 188-245 153-214 (239)
79 2xwt_C Thyrotropin receptor; s 99.9 6.8E-21 2.3E-25 157.6 15.4 195 43-247 31-237 (239)
80 1h6u_A Internalin H; cell adhe 99.9 1.6E-20 5.6E-25 161.2 18.0 197 14-230 38-234 (308)
81 4glp_A Monocyte differentiatio 99.9 1E-20 3.5E-25 162.7 15.5 221 44-268 65-305 (310)
82 2ca6_A RAN GTPase-activating p 99.8 1.9E-22 6.6E-27 178.9 3.8 240 3-248 18-315 (386)
83 4glp_A Monocyte differentiatio 99.8 7.2E-21 2.5E-25 163.7 12.7 225 16-248 63-306 (310)
84 3goz_A Leucine-rich repeat-con 99.8 7.2E-22 2.5E-26 173.6 3.9 243 1-249 5-297 (362)
85 2ast_B S-phase kinase-associat 99.8 1.8E-21 6.2E-26 169.3 4.8 245 18-276 48-312 (336)
86 2ca6_A RAN GTPase-activating p 99.8 1.9E-21 6.4E-26 172.5 3.1 234 38-271 27-317 (386)
87 2ast_B S-phase kinase-associat 99.8 6.6E-21 2.3E-25 165.8 6.3 226 17-254 70-311 (336)
88 3m19_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 145.4 19.0 176 43-226 14-192 (251)
89 4ay9_X Follicle-stimulating ho 99.8 3.7E-19 1.3E-23 155.6 16.0 234 20-266 12-255 (350)
90 4ay9_X Follicle-stimulating ho 99.8 2.2E-18 7.6E-23 150.6 20.4 236 46-291 12-256 (350)
91 3goz_A Leucine-rich repeat-con 99.8 1.2E-20 4.1E-25 165.9 4.6 244 22-269 3-296 (362)
92 3ogk_B Coronatine-insensitive 99.8 3.5E-21 1.2E-25 180.1 1.2 131 14-145 161-326 (592)
93 3ogk_B Coronatine-insensitive 99.8 4.2E-21 1.4E-25 179.6 1.2 233 63-303 266-534 (592)
94 3m19_A Variable lymphocyte rec 99.8 5E-18 1.7E-22 141.4 18.8 178 17-204 14-193 (251)
95 3cvr_A Invasion plasmid antige 99.8 5.2E-18 1.8E-22 156.3 18.2 193 18-235 60-253 (571)
96 3cvr_A Invasion plasmid antige 99.8 6.4E-18 2.2E-22 155.7 18.4 181 44-253 60-247 (571)
97 1h6t_A Internalin B; cell adhe 99.8 6.9E-18 2.4E-22 143.6 16.3 172 39-226 42-213 (291)
98 1h6t_A Internalin B; cell adhe 99.8 8.7E-18 3E-22 143.0 16.3 191 42-249 23-213 (291)
99 2o6s_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 136.1 14.6 154 90-254 28-183 (208)
100 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.1E-22 154.8 15.0 176 38-229 38-213 (605)
101 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.3E-22 133.7 12.4 108 133-247 84-192 (197)
102 4ezg_A Putative uncharacterize 99.7 3.7E-17 1.3E-21 131.0 14.3 153 64-226 41-194 (197)
103 2o6s_A Variable lymphocyte rec 99.7 8.6E-17 2.9E-21 130.0 16.6 176 94-280 11-188 (208)
104 3e6j_A Variable lymphocyte rec 99.7 7.5E-17 2.6E-21 132.3 15.8 131 90-226 40-172 (229)
105 2p1m_B Transport inhibitor res 99.7 7.5E-20 2.6E-24 171.2 -3.0 286 9-302 148-526 (594)
106 2p1m_B Transport inhibitor res 99.7 8.7E-20 3E-24 170.7 -2.6 155 13-167 62-241 (594)
107 1m9s_A Internalin B; cell inva 99.7 3.6E-17 1.2E-21 152.2 14.8 184 3-206 30-213 (605)
108 2v9t_B SLIT homolog 2 protein 99.7 8.8E-17 3E-21 131.0 15.1 132 90-226 32-165 (220)
109 2xot_A Amphoterin-induced prot 99.7 4E-16 1.4E-20 136.8 16.5 177 45-226 20-202 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-16 1.3E-20 127.3 15.2 150 70-226 14-166 (220)
111 1xeu_A Internalin C; cellular 99.7 7.3E-17 2.5E-21 135.2 10.4 172 41-229 17-188 (263)
112 1dce_A Protein (RAB geranylger 99.7 1.8E-19 6.3E-24 166.6 -7.5 177 40-227 346-547 (567)
113 1xeu_A Internalin C; cellular 99.7 5.4E-16 1.9E-20 129.8 13.7 151 39-205 37-187 (263)
114 2v9t_B SLIT homolog 2 protein 99.7 1.9E-15 6.6E-20 123.0 16.3 149 93-248 14-164 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 2.1E-15 7.3E-20 122.8 16.0 147 94-247 15-164 (220)
116 2xot_A Amphoterin-induced prot 99.7 9E-16 3.1E-20 134.6 14.4 173 70-249 21-202 (361)
117 3e6j_A Variable lymphocyte rec 99.7 2.6E-15 8.8E-20 123.1 15.1 151 19-175 21-173 (229)
118 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 118.7 9.2 128 112-247 23-158 (168)
119 1dce_A Protein (RAB geranylger 99.6 1.4E-17 4.9E-22 153.9 -3.2 193 14-220 346-567 (567)
120 2ell_A Acidic leucine-rich nuc 99.6 5.7E-15 1.9E-19 115.0 11.4 135 90-230 24-164 (168)
121 2je0_A Acidic leucine-rich nuc 99.6 9.6E-15 3.3E-19 111.4 11.1 125 112-244 16-148 (149)
122 1w8a_A SLIT protein; signaling 99.6 3.5E-14 1.2E-18 113.1 12.7 127 93-226 11-139 (192)
123 4b8c_D Glucose-repressible alc 99.6 2.1E-15 7.1E-20 143.6 6.6 161 96-267 207-369 (727)
124 1a9n_A U2A', U2A'; complex (nu 99.6 2.2E-14 7.5E-19 112.6 10.7 132 109-248 15-152 (176)
125 2je0_A Acidic leucine-rich nuc 99.5 3.5E-14 1.2E-18 108.2 9.2 81 43-124 17-99 (149)
126 3sb4_A Hypothetical leucine ri 99.5 5.9E-14 2E-18 121.4 10.9 100 136-242 225-327 (329)
127 4b8c_D Glucose-repressible alc 99.5 4.9E-15 1.7E-19 141.1 3.8 179 90-275 173-359 (727)
128 2wfh_A SLIT homolog 2 protein 99.5 3.5E-13 1.2E-17 107.3 13.8 125 94-226 14-139 (193)
129 2o6r_A Variable lymphocyte rec 99.5 7.6E-13 2.6E-17 103.8 14.5 127 93-226 10-137 (177)
130 2wfh_A SLIT homolog 2 protein 99.5 8.7E-13 3E-17 105.0 14.3 127 70-203 13-139 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-14 2.5E-18 109.5 7.4 107 114-226 43-153 (176)
132 1w8a_A SLIT protein; signaling 99.5 8.1E-13 2.8E-17 105.1 13.4 109 91-204 30-140 (192)
133 4fdw_A Leucine rich hypothetic 99.5 1.6E-11 5.3E-16 108.8 22.5 255 15-290 111-379 (401)
134 3sb4_A Hypothetical leucine ri 99.4 4.3E-13 1.5E-17 116.0 11.4 257 16-287 24-327 (329)
135 2o6r_A Variable lymphocyte rec 99.4 2.5E-12 8.7E-17 100.8 13.5 129 114-250 8-138 (177)
136 4fdw_A Leucine rich hypothetic 99.4 2.4E-11 8.2E-16 107.6 20.0 244 5-267 123-380 (401)
137 1ds9_A Outer arm dynein; leuci 99.3 4.6E-14 1.6E-18 112.9 -2.6 131 102-242 37-180 (198)
138 1ds9_A Outer arm dynein; leuci 99.3 2.5E-14 8.4E-19 114.5 -5.1 133 109-250 14-154 (198)
139 2r9u_A Variable lymphocyte rec 99.3 6.9E-11 2.4E-15 92.2 12.4 106 116-229 15-121 (174)
140 3g39_A Variable lymphocyte rec 99.2 6.6E-11 2.3E-15 92.0 11.4 104 115-226 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 91.3 12.1 106 93-205 15-120 (174)
142 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.6E-15 90.2 12.1 106 92-204 11-116 (170)
143 3un9_A NLR family member X1; l 99.1 1.2E-11 4.1E-16 108.5 0.9 59 189-247 182-250 (372)
144 3un9_A NLR family member X1; l 99.1 1.1E-11 3.8E-16 108.7 -0.9 160 66-226 71-252 (372)
145 4gt6_A Cell surface protein; l 99.0 2.9E-08 1E-12 87.8 19.2 122 156-290 260-387 (394)
146 4gt6_A Cell surface protein; l 99.0 1.5E-07 5.1E-12 83.2 22.2 267 13-291 59-367 (394)
147 2ifg_A High affinity nerve gro 98.9 4.1E-09 1.4E-13 91.6 10.8 104 94-204 12-117 (347)
148 2ifg_A High affinity nerve gro 98.9 3.7E-09 1.3E-13 91.9 10.3 104 71-175 12-117 (347)
149 4fs7_A Uncharacterized protein 98.9 6.9E-08 2.4E-12 85.4 18.2 213 38-266 157-375 (394)
150 4fs7_A Uncharacterized protein 98.8 6E-07 2.1E-11 79.3 20.5 265 12-289 66-351 (394)
151 2ra8_A Uncharacterized protein 98.8 6.3E-09 2.2E-13 90.5 7.0 38 189-226 278-320 (362)
152 3e4g_A ATP synthase subunit S, 98.7 3.5E-09 1.2E-13 81.5 2.8 86 214-299 62-157 (176)
153 4h09_A Hypothetical leucine ri 98.7 1.6E-06 5.5E-11 76.1 20.2 81 157-244 236-318 (379)
154 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.6E-13 89.1 4.8 202 16-224 106-341 (362)
155 3e4g_A ATP synthase subunit S, 98.5 4.5E-08 1.5E-12 75.3 3.4 81 191-271 62-153 (176)
156 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.8E-12 74.7 3.6 58 189-246 92-161 (185)
157 4h09_A Hypothetical leucine ri 98.4 2.8E-05 9.7E-10 68.1 18.6 128 109-245 213-342 (379)
158 1io0_A Tropomodulin; LRR prote 98.4 1E-07 3.5E-12 74.9 2.4 59 90-148 93-162 (185)
159 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.7E-10 66.7 5.8 64 188-252 168-236 (267)
160 3rw6_A Nuclear RNA export fact 97.8 3.1E-05 1.1E-09 64.0 6.4 81 159-243 168-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00034 1.2E-08 54.7 4.0 14 190-203 98-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00028 9.7E-09 55.2 3.3 39 188-226 68-111 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0057 2E-07 44.4 5.9 54 165-226 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0081 2.8E-07 43.6 5.9 52 194-247 12-66 (130)
165 2lz0_A Uncharacterized protein 50.1 22 0.00075 23.8 4.1 38 38-76 15-52 (100)
166 2lz0_A Uncharacterized protein 43.1 42 0.0014 22.4 4.7 12 133-144 39-50 (100)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.4e-30 Score=236.24 Aligned_cols=291 Identities=19% Similarity=0.160 Sum_probs=190.1
Q ss_pred CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++++++.+ +..+..+++|++|++++|......+.. .+.++++|++|++++|.+....|..+.++++|++|++++|.+
T Consensus 37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 115 (455)
T 3v47_A 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115 (455)
T ss_dssp CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ecCCccCcCChhHhccCccccEEECcCCcccceECcc-cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC
Confidence 456666665 455667777777777776643333321 566677777777777766666666667777777777777665
Q ss_pred CCCCcc---cCCCCCccEEEecCcccccc-chh-hhcCCCCCEEEcCCCCCcccCCccccCC------------------
Q 020238 80 LKTLPE---ISSAGNIEVMYLNGTAIEEL-PSS-IECLSGLSALYLDHCKRLKSLPSSLCKL------------------ 136 (329)
Q Consensus 80 ~~~~~~---~~~~~~L~~L~l~~~~i~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l------------------ 136 (329)
.+..+. +..+++|++|++++|.+..+ |.. +..+++|++|++++|.+....+..+..+
T Consensus 116 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 543221 45557777777777776644 333 5667777777777766544444333222
Q ss_pred ----------------CCCcEEeccCCCCCCCCCcc-------------------------------------cC--CCc
Q 020238 137 ----------------KSLNSIYLRWCSSLKSLPNE-------------------------------------LG--NLE 161 (329)
Q Consensus 137 ----------------~~L~~L~l~~~~~~~~~~~~-------------------------------------~~--~l~ 161 (329)
++|++|++++|...+..+.. +. ..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence 34555555554332211110 00 113
Q ss_pred cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccc
Q 020238 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLA 239 (329)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~ 239 (329)
+|+.+++++|.+...+... +..+++|++|++++|.++++ +..+..+++|+.|++++|.++.+ +..+..+++|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSV-----FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp CCCEEECCSSCCCEECTTT-----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred CceEEEecCccccccchhh-----cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 5566666666555443333 56788999999999999985 55788899999999999999866 56788899999
Q ss_pred eecccccccccccC---CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcCCCcccchhH
Q 020238 240 YLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLRNNLKLDRNE 298 (329)
Q Consensus 240 ~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~~~ 298 (329)
+|++++|......| ..+++|++|++++|.. +.++. .+..+++|++|++++|+--.+..
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCcccccChhhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999987544434 3457999999999874 44554 44678899999999997766554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.3e-30 Score=250.67 Aligned_cols=136 Identities=22% Similarity=0.306 Sum_probs=61.0
Q ss_pred ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCcccc-ccchhhhcCCCCC
Q 020238 39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGLS 116 (329)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~ 116 (329)
+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 3334444444444443333334444444444444444444333333 2233344444444444444 3344444444455
Q ss_pred EEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238 117 ALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR 174 (329)
Q Consensus 117 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 174 (329)
+|++++|.+...+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.+.
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 5555444444444444444445555555544444444444444555555555554443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.5e-30 Score=244.96 Aligned_cols=279 Identities=15% Similarity=0.169 Sum_probs=180.5
Q ss_pred hhhhcc--CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCC-CCc-ccCccccCC------CcccEEeecCCC
Q 020238 9 LWDSVQ--HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK-SLR-ILPPGIFRL------EFLKELDLWGCS 78 (329)
Q Consensus 9 l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~ 78 (329)
+|..+. .+++|++|++++|......|. .+.++++|++|++++|. +.+ .+|..+..+ ++|++|++++|.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 888888 889999999998886666665 67778888888888876 544 455444433 555555555554
Q ss_pred CCCCCcc---cCCCCCccEEEecC-----------------------ccccccchhhhcCCC-CCEEEcCCCCCcccCCc
Q 020238 79 KLKTLPE---ISSAGNIEVMYLNG-----------------------TAIEELPSSIECLSG-LSALYLDHCKRLKSLPS 131 (329)
Q Consensus 79 ~~~~~~~---~~~~~~L~~L~l~~-----------------------~~i~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~ 131 (329)
+. .+|. +..+++|+.|++++ |.+..+|..+..+++ |++|++++|.+. .+|.
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 44 3332 34444455554444 444444555555666 666666666544 4554
Q ss_pred cccCCC--CCcEEeccCCCCCCCCCcccC-------CCccCcEEeccCccccccChhhhh-ccc----------------
Q 020238 132 SLCKLK--SLNSIYLRWCSSLKSLPNELG-------NLEALNSLNAEGTAIREVPLSIVR-LNN---------------- 185 (329)
Q Consensus 132 ~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~~-~~~---------------- 185 (329)
.+.... +|+.|++++|...+..|..+. .+++|+.|++++|.+..+|..+.. +..
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 444333 566666666655555555454 455666666666666655543321 110
Q ss_pred --cC-------CCCCccEEEcCCCCCCCcchhhc--CCCCccEEEcCCCcCccCChhhhcCCccceecccc------ccc
Q 020238 186 --FD-------GLQNLTSLYLTDCGITELPENLG--QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY------CER 248 (329)
Q Consensus 186 --~~-------~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~------~~~ 248 (329)
+. ++++|+.|++++|.++++|..+. .+++|+.|++++|+++.+|..+..+++|+.|++++ |..
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence 11 12277888888888877777776 78888888888888888888888888888888854 444
Q ss_pred ccccCCC---CCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCccc
Q 020238 249 LQSLPKL---PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKL 294 (329)
Q Consensus 249 l~~~~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l 294 (329)
.+.+|.. +++|+.|++++|.. +.+|..+. ++|++|++++|+-.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 4555533 47888888888885 77777655 57889999988654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.4e-30 Score=247.75 Aligned_cols=231 Identities=23% Similarity=0.291 Sum_probs=125.6
Q ss_pred hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCC-cccEEeecCCCCCCCCc-ccCC
Q 020238 11 DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLE-FLKELDLWGCSKLKTLP-EISS 88 (329)
Q Consensus 11 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~ 88 (329)
..+..+++|++|++++|......+. ..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.++ .+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred hHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 3344444444444444432222222 0234444444444444444334444443333 44444444443332222 1222
Q ss_pred --CCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcE
Q 020238 89 --AGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNS 165 (329)
Q Consensus 89 --~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 165 (329)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+....|..+..+++|+.|++++|...+.+|..+..+++|+.
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 345666666666665 45566666777777777776665566666666666777777666666666666666666666
Q ss_pred EeccCcccc-ccChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceec
Q 020238 166 LNAEGTAIR-EVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLK 242 (329)
Q Consensus 166 L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~ 242 (329)
|++++|.+. .+|.. +..+++|+.|++++|.+++ +|..++.+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 471 L~L~~N~l~~~~p~~------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 471 LILDFNDLTGEIPSG------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp EECCSSCCCSCCCGG------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred EEecCCcccCcCCHH------HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 666666665 23322 3445666666666666663 5555666666666666666665 5555566666666666
Q ss_pred cccccc
Q 020238 243 LSYCER 248 (329)
Q Consensus 243 l~~~~~ 248 (329)
+++|+.
T Consensus 545 Ls~N~l 550 (768)
T 3rgz_A 545 LNTNLF 550 (768)
T ss_dssp CCSSEE
T ss_pred CCCCcc
Confidence 665543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.9e-29 Score=235.63 Aligned_cols=295 Identities=18% Similarity=0.141 Sum_probs=241.4
Q ss_pred CCCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++++++.++.. +..+++|++|++++|+ +...|. .+..+++|++|++++|.+....|..+..+++|++|++++|..
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPS--GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred eecCccCccCHHHhccccCCCEEeccCCc-cCCCCh--hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 356677776544 7889999999999997 667776 688899999999999988777777888999999999999887
Q ss_pred CCCCcc--cCCCCCccEEEecCcccccc---chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC
Q 020238 80 LKTLPE--ISSAGNIEVMYLNGTAIEEL---PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP 154 (329)
Q Consensus 80 ~~~~~~--~~~~~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 154 (329)
...++. +..+++|++|++++|.+... +..+..+++|++|++++|.+....+..+..+++|++|++++|......+
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 755553 66779999999999998854 5678899999999999998877778888899999999999988776655
Q ss_pred c-ccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC--cc--hhhcCCCCccEEEcCCCcCccC-
Q 020238 155 N-ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LP--ENLGQLSLLLELYLEKNNFERL- 228 (329)
Q Consensus 155 ~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~--~~~~~~~~L~~L~l~~~~i~~~- 228 (329)
. .+..+++|+.|++++|.+...+... +..+++|+.|++++|.+++ ++ ..+..+++|+.|++++|+++.+
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQL-----FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTT-----TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred chhhhCcccCCEEECCCCccCCcCHHH-----HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 4 4888999999999999988665544 5778999999999999886 22 4578899999999999999955
Q ss_pred ChhhhcCCccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHHHHHhh
Q 020238 229 PESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILE 304 (329)
Q Consensus 229 ~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~ 304 (329)
|..+..+++|+.|++++|......| ..+++| .|++++|...+..+..+..+++|++|++++|+--.+.....+..
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 570 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHH
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHH
Confidence 5788999999999999987655555 344677 99999998665555556667889999999999877766555443
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.3e-30 Score=245.70 Aligned_cols=280 Identities=15% Similarity=0.152 Sum_probs=165.0
Q ss_pred hhhhcc--CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCC-CCc-ccCccccCC-------CcccEEeecCC
Q 020238 9 LWDSVQ--HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK-SLR-ILPPGIFRL-------EFLKELDLWGC 77 (329)
Q Consensus 9 l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~ 77 (329)
+|..+. .+++|++|++++|......|. .+.++++|++|++++|. +.+ .+|..+..+ ++|++|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~--~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPD--FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCG--GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChH--HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 787777 888888888888876666664 67777777777777776 443 344333222 25555555554
Q ss_pred CCCC------------------------CCcccCCCCCccEEEecCccccccchhhhcCCC-CCEEEcCCCCCcccCCcc
Q 020238 78 SKLK------------------------TLPEISSAGNIEVMYLNGTAIEELPSSIECLSG-LSALYLDHCKRLKSLPSS 132 (329)
Q Consensus 78 ~~~~------------------------~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~ 132 (329)
.+.. .+|.+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+. .+|..
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 4441 333333344444444444444444444444554 555555554433 33333
Q ss_pred ccCCC--CCcEEeccCCCCCCCCCcc---cC--CCccCcEEeccCccccccChhhh-hccc------------------c
Q 020238 133 LCKLK--SLNSIYLRWCSSLKSLPNE---LG--NLEALNSLNAEGTAIREVPLSIV-RLNN------------------F 186 (329)
Q Consensus 133 ~~~l~--~L~~L~l~~~~~~~~~~~~---~~--~l~~L~~L~l~~~~l~~~~~~~~-~~~~------------------~ 186 (329)
+...+ +|+.|++++|...+..|.. +. ..++|+.|++++|.+..+|..+. .+.. +
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 717 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHh
Confidence 32222 1444444444332222110 00 11234444444444443333221 0000 1
Q ss_pred -------CCCCCccEEEcCCCCCCCcchhhc--CCCCccEEEcCCCcCccCChhhhcCCccceecccc------cccccc
Q 020238 187 -------DGLQNLTSLYLTDCGITELPENLG--QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY------CERLQS 251 (329)
Q Consensus 187 -------~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~------~~~l~~ 251 (329)
.++++|+.|++++|.++.+|..+. .+++|+.|++++|+++.+|..+..+++|+.|++++ |...+.
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence 122378888888888888887776 78888888888888888888888888888888876 444455
Q ss_pred cCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCccc
Q 020238 252 LPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKL 294 (329)
Q Consensus 252 ~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l 294 (329)
+|. .+++|+.|++++|.. +.+|..+. ++|+.|++++|+..
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 553 347889999998875 77877655 47999999998754
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=9.7e-29 Score=216.38 Aligned_cols=268 Identities=19% Similarity=0.183 Sum_probs=136.3
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++++++.++ .+..+++|++|++++|+ +...+. +..+++|++|++++|.+.. + ..+..+++|++|++++|.+.
T Consensus 52 ~~~~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~- 123 (347)
T 4fmz_A 52 AGEKVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS- 123 (347)
T ss_dssp CSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-
T ss_pred eCCccccch-hhhhcCCccEEEccCCc-cccchh---hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-
Confidence 345555553 35566666666666664 333332 5556666666666654333 2 23555666666666655433
Q ss_pred CCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCC-------------
Q 020238 82 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS------------- 148 (329)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~------------- 148 (329)
.++.+..+++|+.|++++|........+..+++|++|++++|......+ +..+++|+.|++++|.
T Consensus 124 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 201 (347)
T 4fmz_A 124 DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSL 201 (347)
T ss_dssp CCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTC
T ss_pred CchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCcc
Confidence 2333444455555555555333222234455555555555544322111 3444455555554443
Q ss_pred ---------CCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEE
Q 020238 149 ---------SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELY 219 (329)
Q Consensus 149 ---------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 219 (329)
.....+ +..+++|+.|++++|.+..++. +..+++|+.|++++|.+++++ .+..+++|+.|+
T Consensus 202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 271 (347)
T 4fmz_A 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLN 271 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred ceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEE
Confidence 322211 4445555555555555554432 244556666666666665542 355566666666
Q ss_pred cCCCcCccCChhhhcCCccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 220 LEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 220 l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+++|+++.++ .+..+++|+.|++++|......+ ..+++|+.|++++|+. +.++. +..+++|++|++++|+
T Consensus 272 l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 272 VGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-ccccC-hhhhhccceeehhhhc
Confidence 6666665553 35556666666666654332222 2345666666666653 32322 4445566666666653
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.3e-30 Score=240.82 Aligned_cols=283 Identities=17% Similarity=0.123 Sum_probs=198.2
Q ss_pred CCCCchhhhhh--hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCc-ccEEeecCC
Q 020238 1 MPHGNIQQLWD--SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEF-LKELDLWGC 77 (329)
Q Consensus 1 l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~ 77 (329)
|++++++.+|. .+..+++|++|++++|.....+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|
T Consensus 312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 34566666665 66666677777776666332444 4566667777777776544 56666667777 777777777
Q ss_pred CCCCCCccc-CCC--CCccEEEecCcccc-ccchhhh-------cCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEecc
Q 020238 78 SKLKTLPEI-SSA--GNIEVMYLNGTAIE-ELPSSIE-------CLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLR 145 (329)
Q Consensus 78 ~~~~~~~~~-~~~--~~L~~L~l~~~~i~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 145 (329)
.+. .+|.. ... ++|+.|++++|.+. ..|..+. .+++|++|++++|.+. .+|. .+..+++|++|+++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence 655 45532 222 36777777777776 3444455 5668888888887765 4444 35568888888988
Q ss_pred CCCCCCCCCcccC-C-------CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccE
Q 020238 146 WCSSLKSLPNELG-N-------LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE 217 (329)
Q Consensus 146 ~~~~~~~~~~~~~-~-------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 217 (329)
+|... .+|.... . +++|+.|++++|.+..+|..+. ...+++|+.|++++|.++++|..+..+++|+.
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR----ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh----hccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 87666 5554432 2 2389999999999888876551 03789999999999999999999999999999
Q ss_pred EEcC------CCcCc-cCChhhhcCCccceecccccccccccCC-CCCCccEEeccCCCCCcCCCCCC-----CCC---C
Q 020238 218 LYLE------KNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK-LPCNLSELDAHHCTALESSPGLV-----FPS---R 281 (329)
Q Consensus 218 L~l~------~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~-----~~~---~ 281 (329)
|+++ +|++. .+|..+..+++|+.|++++|.. +.+|. ..++|+.|++++|+....-.... ... .
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 619 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEE
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCccccHHhcchhhhcccceee
Confidence 9995 45555 8889999999999999999886 88884 45899999999998543211111 111 1
Q ss_pred CCcEEEcCCCcccc
Q 020238 282 DPQYFDLRNNLKLD 295 (329)
Q Consensus 282 ~L~~L~i~~~~~l~ 295 (329)
.....++.+|+.+.
T Consensus 620 ~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 620 YDKTQDIRGCDALD 633 (636)
T ss_dssp CCTTSEEESCGGGC
T ss_pred cCCccccCCCcccc
Confidence 23446788998774
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.5e-29 Score=239.83 Aligned_cols=281 Identities=21% Similarity=0.269 Sum_probs=193.9
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCccc------------------CCCccccc--CcccCcEEeccCCCCCcccCcc
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTK------------------SPNHSLTL--HLDKLVNLNLNNCKSLRILPPG 62 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~ 62 (329)
.|+++.+|..+..+++|++|++++|+ +.. +|. .+. ++++|++|++++|.+.+.+|..
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~iP~~ 510 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQLPDF 510 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred cCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCccChHH
Confidence 46777799999999999999999998 444 666 555 9999999999999999999999
Q ss_pred ccCCCcccEEeecCCC-CCC-CCc--------ccCCCCCccEEEecCccccccch--hhhcCCCCCEEEcCCCCCcccCC
Q 020238 63 IFRLEFLKELDLWGCS-KLK-TLP--------EISSAGNIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKSLP 130 (329)
Q Consensus 63 ~~~l~~L~~L~l~~~~-~~~-~~~--------~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~ 130 (329)
+.++++|++|++++|. +.+ .+| .+..+++|+.|++++|.+..+|. .+..+++|++|++++|.+. .+|
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 9999999999999997 544 344 23344799999999999999998 8999999999999998876 777
Q ss_pred ccccCCCCCcEEeccCCCCCCCCCcccCCCcc-CcEEeccCccccccChhhhhccc-------------------c----
Q 020238 131 SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEA-LNSLNAEGTAIREVPLSIVRLNN-------------------F---- 186 (329)
Q Consensus 131 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~~~-------------------~---- 186 (329)
.+..+++|+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+..... +
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 7888899999999987766 78878888888 99999988888766643321100 0
Q ss_pred C--CCCCccEEEcCCCCCCCcchhhc-CCCCccEEEcCCCcCccCChhhhc--------CCccceecccccccccccCC-
Q 020238 187 D--GLQNLTSLYLTDCGITELPENLG-QLSLLLELYLEKNNFERLPESIIH--------LSKLAYLKLSYCERLQSLPK- 254 (329)
Q Consensus 187 ~--~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~l~~--------~~~L~~L~l~~~~~l~~~~~- 254 (329)
. .+++|+.|++++|.++.+|..+. .+++|+.|++++|+++.+|..+.. +++|+.|++++|. ++.+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHH
Confidence 0 12245555555555555554432 455555555555555544433222 1255555555543 223331
Q ss_pred ----CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCC
Q 020238 255 ----LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291 (329)
Q Consensus 255 ----~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~ 291 (329)
.+++|+.|++++|.. +.+|..+..+++|+.|++++|
T Consensus 747 l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp GSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCC
T ss_pred hhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCC
Confidence 234555555555542 224444444445555555443
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.7e-30 Score=219.67 Aligned_cols=248 Identities=18% Similarity=0.201 Sum_probs=190.4
Q ss_pred CCceEEEecCCCCcc--cCCCcccccCcccCcEEeccC-CCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCc
Q 020238 17 GKLKQIISRASNFFT--KSPNHSLTLHLDKLVNLNLNN-CKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNI 92 (329)
Q Consensus 17 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L 92 (329)
.+++.|+++++.... ..+. .+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+| .+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 578888888887433 4554 678888888888885 66666778888888888888888887765555 46667888
Q ss_pred cEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCC-CCcEEeccCCCCCCCCCcccCCCccCcEEeccC
Q 020238 93 EVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLK-SLNSIYLRWCSSLKSLPNELGNLEALNSLNAEG 170 (329)
Q Consensus 93 ~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (329)
++|++++|.+. .+|..+..+++|++|++++|.+...+|..+..++ +|++|++++|...+..|..+..+. |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 88888888887 6777788888888888888887667777777777 888888888777777777777776 88888888
Q ss_pred ccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceecccccccc
Q 020238 171 TAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l 249 (329)
|.+....... +..+++|+.|++++|.+++.+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+..
T Consensus 207 N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 207 NMLEGDASVL-----FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SEEEECCGGG-----CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CcccCcCCHH-----HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 8877554443 56778888888888888875555777888888888888887 77778888888888888887766
Q ss_pred cccCC--CCCCccEEeccCCCCCcC
Q 020238 250 QSLPK--LPCNLSELDAHHCTALES 272 (329)
Q Consensus 250 ~~~~~--~~~~L~~L~l~~c~~l~~ 272 (329)
+.+|. .+++|+.+++++|+.+..
T Consensus 282 ~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 282 GEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCCSTTGGGSCGGGTCSSSEEES
T ss_pred ccCCCCccccccChHHhcCCCCccC
Confidence 66664 345677777777776543
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.9e-28 Score=223.65 Aligned_cols=292 Identities=17% Similarity=0.122 Sum_probs=176.5
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT 82 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 82 (329)
+.+++.+|..+. ++++.|++++|+ +...+.. .+..+++|++|++++|.+....|..+.++++|++|++++|.+...
T Consensus 20 ~~~l~~ip~~~~--~~l~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 20 RKRFVAVPEGIP--TETRLLDLGKNR-IKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSSC-CCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCcCcCCCCCC--CCCcEEECCCCc-cceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 445556654442 466667776665 3333221 566666677777766665555566666666677777666554433
Q ss_pred Ccc-cCCCCCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 83 LPE-ISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 83 ~~~-~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
.+. +..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|......+..+..+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 222 34456666666666666633 3455666666666666666555455556666666666666654443333345555
Q ss_pred ccCcEEeccCccccccChhh-hhcc------------------ccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEc
Q 020238 161 EALNSLNAEGTAIREVPLSI-VRLN------------------NFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYL 220 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~-~~~~------------------~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l 220 (329)
++|+.|++++|.+..++... ..+. ......+|+.|++++|.++++|. .+..+++|+.|++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 56666666655554433211 0000 01112367777777777777663 5677888888888
Q ss_pred CCCcCccCC-hhhhcCCccceecccccccccccC---CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcCCCcccc
Q 020238 221 EKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLRNNLKLD 295 (329)
Q Consensus 221 ~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~~~~~l~ 295 (329)
++|.++.++ ..+..+++|+.|++++|......+ ..+++|+.|++++|. ++.++. .+..+++|++|++++|+--.
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCccC
Confidence 888887555 457778888888888876444333 234788888888886 444443 44566788899998887665
Q ss_pred hhHH
Q 020238 296 RNEI 299 (329)
Q Consensus 296 ~~~~ 299 (329)
+...
T Consensus 335 ~c~~ 338 (477)
T 2id5_A 335 DCRL 338 (477)
T ss_dssp SGGG
T ss_pred ccch
Confidence 5543
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.5e-28 Score=230.69 Aligned_cols=241 Identities=17% Similarity=0.140 Sum_probs=138.6
Q ss_pred CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++|+++.+ +..+..+++|++|++++|......+. .+.++++|++|++++|.+....|..+.++++|++|++++|.+
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED--TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChh--hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 456677776 45677777777777777763332333 567777777777777776666666777777777777777665
Q ss_pred CCCC-cccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCc--EEeccCCCCCCCCCc
Q 020238 80 LKTL-PEISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLN--SIYLRWCSSLKSLPN 155 (329)
Q Consensus 80 ~~~~-~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~ 155 (329)
.... ..+..+++|++|++++|.+..++ +.+..+++|++|++++|.+....+..+..+++|+ .|++++|...+..|.
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~ 197 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT
T ss_pred ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh
Confidence 5432 24555577777777777766442 2333467777777777665544455555666666 566665544333222
Q ss_pred ccCCC---------------------------------------------------ccCcEEeccCccccccChhhhhcc
Q 020238 156 ELGNL---------------------------------------------------EALNSLNAEGTAIREVPLSIVRLN 184 (329)
Q Consensus 156 ~~~~l---------------------------------------------------~~L~~L~l~~~~l~~~~~~~~~~~ 184 (329)
.+... .+|+.+++++|.+..++...
T Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~---- 273 (606)
T 3t6q_A 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT---- 273 (606)
T ss_dssp TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT----
T ss_pred HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH----
Confidence 21110 02333333333333333222
Q ss_pred ccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceeccccccc
Q 020238 185 NFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCER 248 (329)
Q Consensus 185 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~ 248 (329)
++.+++|+.|++++|.++++|..+..+++|+.|++++|.++.+ +..+..+++|++|++++|..
T Consensus 274 -~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 274 -FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp -TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred -hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 4455566666666666666655555566666666666655533 33455555555555555543
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=225.34 Aligned_cols=261 Identities=20% Similarity=0.160 Sum_probs=167.8
Q ss_pred CCCCchhhh-hhhccCCCCceEEEecCCCCcccC-CCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCC
Q 020238 1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKS-PNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCS 78 (329)
Q Consensus 1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 78 (329)
|++|+++.+ +..+..+++|++|++++|. +... +. .+.++++|++|++++|.+....+..+.++++|++|++++|.
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPG--AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT--TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCc-cCEeChh--hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 455666665 3456666667777766665 3333 32 45566666666666655443323334555666666666555
Q ss_pred CCCCCc-ccCCCCCccEEEecCcc------------------------ccccch-hhhcCCCCCEEEcCCCCCcccCCcc
Q 020238 79 KLKTLP-EISSAGNIEVMYLNGTA------------------------IEELPS-SIECLSGLSALYLDHCKRLKSLPSS 132 (329)
Q Consensus 79 ~~~~~~-~~~~~~~L~~L~l~~~~------------------------i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 132 (329)
+....+ .+..+++|+.|++++|. +..++. .+..+++|+.|++.+|.+....+..
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 195 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence 443322 23333445555555444 443332 2444555555555554444433444
Q ss_pred ccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcC
Q 020238 133 LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQ 211 (329)
Q Consensus 133 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~ 211 (329)
+..+++|+.|++++|...+.++.......+|+.|++++|.+..++... +..+++|+.|++++|.+++++. .+..
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA-----VRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH-----HTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH-----hcCccccCeeECCCCcCCccChhhccc
Confidence 555666666666666555555555444557777888888877777544 5778999999999999998654 5788
Q ss_pred CCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCC
Q 020238 212 LSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTAL 270 (329)
Q Consensus 212 ~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l 270 (329)
+++|+.|++++|+++.+ +..+..+++|+.|++++|. ++.++ ..+++|+.|++++|+..
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence 99999999999999955 5788999999999999975 45555 34579999999999854
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2e-28 Score=213.11 Aligned_cols=274 Identities=17% Similarity=0.178 Sum_probs=155.7
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT 82 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 82 (329)
+++++.+|..+ .++++.|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+. .
T Consensus 42 ~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~ 116 (332)
T 2ft3_A 42 DLGLKAVPKEI--SPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116 (332)
T ss_dssp SSCCSSCCSCC--CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-S
T ss_pred CCCccccCCCC--CCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-c
Confidence 44455555433 2456666666655 3333221 4556666666666666555544555666666666666665443 2
Q ss_pred CcccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc--cCCccccCCCCCcEEeccCCCCCCCCCcccCC
Q 020238 83 LPEISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK--SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN 159 (329)
Q Consensus 83 ~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 159 (329)
+|.... ++|++|++++|.+..++. .+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|... .+|..+.
T Consensus 117 l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~- 192 (332)
T 2ft3_A 117 IPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP- 192 (332)
T ss_dssp CCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC-
T ss_pred cCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc-
Confidence 322111 566666666666665443 35556666666666655432 333444444 5666666664433 2443332
Q ss_pred CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCcc
Q 020238 160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKL 238 (329)
Q Consensus 160 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L 238 (329)
++|+.|++++|.+..++... +..+++|+.|++++|.+++++. .+..+++|+.|++++|+++.+|..+..+++|
T Consensus 193 -~~L~~L~l~~n~i~~~~~~~-----l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 193 -ETLNELHLDHNKIQAIELED-----LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266 (332)
T ss_dssp -SSCSCCBCCSSCCCCCCTTS-----STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred -CCCCEEECCCCcCCccCHHH-----hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence 46666666666666554332 4566777777777777777543 5666777777777777777777767777777
Q ss_pred ceecccccccccccCC----------CCCCccEEeccCCCCC--cCCCCCCCCCCCCcEEEcCCCc
Q 020238 239 AYLKLSYCERLQSLPK----------LPCNLSELDAHHCTAL--ESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 239 ~~L~l~~~~~l~~~~~----------~~~~L~~L~l~~c~~l--~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+.|++++|. ++.++. ..++|+.|++++|+.. +..+..+..++.|+.+++++|.
T Consensus 267 ~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777754 333331 1345677777777654 3334445556677777777664
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.1e-28 Score=208.74 Aligned_cols=275 Identities=17% Similarity=0.167 Sum_probs=166.8
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++++++.+|..+. ++++.|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+.
T Consensus 39 ~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 113 (330)
T 1xku_A 39 SDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113 (330)
T ss_dssp TTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-
T ss_pred cCCCccccCccCC--CCCeEEECCCCc-CCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-
Confidence 3445555554332 567777777765 4444332 4666777777777777666555666677777777777776544
Q ss_pred CCcccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc--cCCccccCCCCCcEEeccCCCCCCCCCcccC
Q 020238 82 TLPEISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK--SLPSSLCKLKSLNSIYLRWCSSLKSLPNELG 158 (329)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 158 (329)
.+|... .++|+.|++++|.+..++. .+..+++|++|++++|.+.. ..+..+..+++|++|++++|... .+|..+.
T Consensus 114 ~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~ 191 (330)
T 1xku_A 114 ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP 191 (330)
T ss_dssp BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC
T ss_pred ccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc
Confidence 333211 1567777777777765543 35667777777777766543 34455666777777777775443 3444332
Q ss_pred CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCc
Q 020238 159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSK 237 (329)
Q Consensus 159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~ 237 (329)
++|+.|++++|.+..++... +..+++|+.|++++|.+++++. .+..+++|+.|++++|+++.+|..+..+++
T Consensus 192 --~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 264 (330)
T 1xku_A 192 --PSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264 (330)
T ss_dssp --TTCSEEECTTSCCCEECTGG-----GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred --ccCCEEECCCCcCCccCHHH-----hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCC
Confidence 56777777777766554333 4566777777777777776443 566677777777777777777766777777
Q ss_pred cceecccccccccccCC----------CCCCccEEeccCCCCCc--CCCCCCCCCCCCcEEEcCCC
Q 020238 238 LAYLKLSYCERLQSLPK----------LPCNLSELDAHHCTALE--SSPGLVFPSRDPQYFDLRNN 291 (329)
Q Consensus 238 L~~L~l~~~~~l~~~~~----------~~~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~i~~~ 291 (329)
|++|++++|+ ++.++. ..++++.+++++|+... ..|.....+..++.+++++|
T Consensus 265 L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 265 IQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 7777777754 333331 12466777777776431 22344445566677777665
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=226.77 Aligned_cols=119 Identities=15% Similarity=0.033 Sum_probs=81.7
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
+++++++.+|..+. ++|++|++++|. +...+. ..+..+++|++|++++|.+....|..+.++++|++|++++|.+.
T Consensus 7 ls~n~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 7 RSKNGLIHVPKDLS--QKTTILNISQNY-ISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CTTSCCSSCCCSCC--TTCSEEECCSSC-CCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred cCCCCccccccccc--ccccEEECCCCc-ccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 46777777776554 678888888776 444432 15677777888888877766666677777777777777776554
Q ss_pred CCCcccCCCCCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCC
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKR 125 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~ 125 (329)
.+|.. .+++|++|++++|.+.. +|..++.+++|++|++++|.+
T Consensus 83 -~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 83 -KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp -EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred -ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 45544 56777777777777764 456677777777777776654
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3e-28 Score=220.93 Aligned_cols=285 Identities=16% Similarity=0.135 Sum_probs=221.2
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccC-CCcccccCcccCcEEeccCCCCCccc-CccccCCCcccEEeecCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKS-PNHSLTLHLDKLVNLNLNNCKSLRIL-PPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~ 79 (329)
++.+++.+|. + .++|++|++++|. +... +. .+..+++|++|++++|.....+ +..+.++++|++|++++|.+
T Consensus 18 ~~~~l~~lp~-l--~~~l~~L~Ls~n~-i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 18 INRGLHQVPE-L--PAHVNYVDLSLNS-IAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp CSSCCSSCCC-C--CTTCCEEECCSSC-CCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred CCCCcccCCC-C--CCccCEEEecCCc-cCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 4567777775 2 3789999999998 4544 44 7899999999999999877555 56788999999999999987
Q ss_pred CCCCc-ccCCCCCccEEEecCccccc-cchh--hhcCCCCCEEEcCCCCCcccCCcc-ccCCCCCcEEeccCCCCCCCCC
Q 020238 80 LKTLP-EISSAGNIEVMYLNGTAIEE-LPSS--IECLSGLSALYLDHCKRLKSLPSS-LCKLKSLNSIYLRWCSSLKSLP 154 (329)
Q Consensus 80 ~~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~ 154 (329)
....+ .+..+++|++|++++|.+.. .+.. +..+++|++|++++|.+....|.. +.++++|++|++++|......+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 76655 56777999999999999984 3443 888999999999999887766665 7899999999999988776655
Q ss_pred cccCC----------------------------------CccCcEEeccCcccccc-Chhhhhc---c------------
Q 020238 155 NELGN----------------------------------LEALNSLNAEGTAIREV-PLSIVRL---N------------ 184 (329)
Q Consensus 155 ~~~~~----------------------------------l~~L~~L~l~~~~l~~~-~~~~~~~---~------------ 184 (329)
..+.. +++|+.|++++|.+... +..+... .
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 54433 35677788877766521 1111100 0
Q ss_pred ----------------ccC--CCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceeccc
Q 020238 185 ----------------NFD--GLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLS 244 (329)
Q Consensus 185 ----------------~~~--~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~ 244 (329)
.+. ..++|+.|++++|.+++ .+..+..+++|+.|++++|+++.+ +..+..+++|++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 000 12579999999999888 466788899999999999999965 5688899999999999
Q ss_pred ccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 245 YCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 245 ~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+|...+..+ ..+++|+.|++++|...+..+..+..+++|++|++++|.
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 986533333 346899999999998766667788889999999999973
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=6.3e-28 Score=211.21 Aligned_cols=265 Identities=19% Similarity=0.241 Sum_probs=177.3
Q ss_pred ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCc
Q 020238 13 VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNI 92 (329)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 92 (329)
+..+++|++|+++++. +...+ .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+. .++.+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~-i~~~~---~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEK-VASIQ---GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSC-CCCCT---TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTC
T ss_pred chhcccccEEEEeCCc-cccch---hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-CchHHcCCCcC
Confidence 3478899999999987 55554 47889999999999987654 344 789999999999998654 56778888999
Q ss_pred cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
++|++++|.+..++. +..+++|++|++++|......+. +..+++|++|++++|......+ +..+++|+.|++++|.
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 999999999998776 88999999999999876665544 8889999999999977654432 7788999999999998
Q ss_pred ccccChhhhhc----------------cccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCC
Q 020238 173 IREVPLSIVRL----------------NNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLS 236 (329)
Q Consensus 173 l~~~~~~~~~~----------------~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~ 236 (329)
+..++. +..+ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++ .+..++
T Consensus 189 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~ 265 (347)
T 4fmz_A 189 IEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLT 265 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred cccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCC
Confidence 876653 1110 002334445555555555444433 444555555555555544432 344455
Q ss_pred ccceecccccccccccC--CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 237 KLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 237 ~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+|+.|++++|. ++.++ ..+++|+.|++++|......+..+..+++|++|++++|+
T Consensus 266 ~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 266 KLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 55555555542 22222 223455555555554333333333444555555555554
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.2e-27 Score=222.71 Aligned_cols=119 Identities=14% Similarity=0.081 Sum_probs=81.1
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
+++++++.+|..+. +++++|++++|. +...+. ..+.++++|++|++++|.+....|..+.++++|++|++++|.+.
T Consensus 38 ls~~~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 38 YSNRNLTHVPKDLP--PRTKALSLSQNS-ISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CTTSCCCSCCTTSC--TTCCEEECCSSC-CCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCccCCCCCC--CCcCEEECCCCC-ccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 35667777776553 677888888776 444442 15677777888888877766666677777777778887776654
Q ss_pred CCCcccCCCCCccEEEecCccccccc--hhhhcCCCCCEEEcCCCCC
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSGLSALYLDHCKR 125 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~~ 125 (329)
.+|.. .+++|++|++++|.+..++ ..++.+++|++|++++|.+
T Consensus 114 -~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 114 -NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp -EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred -ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 45544 5677777777777776543 5677777777777776654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=218.81 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=103.9
Q ss_pred cCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-cchh-hcC
Q 020238 134 CKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPEN-LGQ 211 (329)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~-~~~ 211 (329)
..+++|++|++++|...+..|..+..+++|+.|++++|.+..++..... +..+++|+.|++++|.+++ +|.. +..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM---TTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH---HTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH---HhhCCCCCEEECCCCcCCcccccchhcc
Confidence 3455666666666666655666666666777777777766643321111 3556677777777777766 6553 555
Q ss_pred CCCccEEEcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCC-CCCCCCCcEE
Q 020238 212 LSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGL-VFPSRDPQYF 286 (329)
Q Consensus 212 ~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L 286 (329)
+++|+.|++++|+++ .++..+. ++|+.|++++|. ++.+|. .+++|+.|++++|. ++.+|.. +..+++|++|
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEE
Confidence 677777777777665 3333322 577777777764 445653 34788888888886 4566665 5667788888
Q ss_pred EcCCCcccchhHHHHH
Q 020238 287 DLRNNLKLDRNEIREI 302 (329)
Q Consensus 287 ~i~~~~~l~~~~~~~~ 302 (329)
++++|+--.+.....+
T Consensus 474 ~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 474 WLHTNPWDCSCPRIDY 489 (520)
T ss_dssp ECCSSCBCCCHHHHHH
T ss_pred ECcCCCCcccCCchHH
Confidence 8888887766665554
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=7.9e-28 Score=223.24 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=52.6
Q ss_pred CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++++++.+ +..+..+++|++|++++|+ +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCC-cCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 345556555 3445666666666666665 3333321 455666666666666655444344455566666666666554
Q ss_pred CC-CC-cccCCCCCccEEEecCcc
Q 020238 80 LK-TL-PEISSAGNIEVMYLNGTA 101 (329)
Q Consensus 80 ~~-~~-~~~~~~~~L~~L~l~~~~ 101 (329)
.. .. +.+..+++|++|++++|.
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cccchhhhhhccCCccEEECCCCc
Confidence 32 11 233444555555555444
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-27 Score=212.37 Aligned_cols=274 Identities=12% Similarity=0.071 Sum_probs=176.1
Q ss_pred CCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 3 HGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 3 ~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++.++.+|.. +..+++|++|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus 54 ~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 131 (390)
T 3o6n_A 54 NSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131 (390)
T ss_dssp SCEESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCchhhCChhHhcccccCcEEECCCCc-ccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence 4555556544 4566777777777665 3333321 56667777777777766555555556667777777777765543
Q ss_pred CCcc-cCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC--------
Q 020238 82 TLPE-ISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK-------- 151 (329)
Q Consensus 82 ~~~~-~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------- 151 (329)
..+. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+.... +..+++|+.+++++|....
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcce
Confidence 2222 345567777777777666443 34666677777777776543321 2233444444443332211
Q ss_pred ----------CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEc
Q 020238 152 ----------SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYL 220 (329)
Q Consensus 152 ----------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l 220 (329)
.++. ...++|+.|++++|.+...+ . +..+++|+.|++++|.++++ |..+..+++|+.|++
T Consensus 209 ~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~-~------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 209 ELDASHNSINVVRG--PVNVELTILKLQHNNLTDTA-W------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp EEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred EEECCCCeeeeccc--cccccccEEECCCCCCcccH-H------HcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 1111 11245666666666666442 1 46678899999999988884 667888999999999
Q ss_pred CCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCccc
Q 020238 221 EKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKL 294 (329)
Q Consensus 221 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l 294 (329)
++|+++.++..+..+++|+.|++++|. ++.+|. .+++|+.|++++|. ++.++ ...++.|++|++++|+--
T Consensus 280 ~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 280 SNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCcc
Confidence 999998887777788899999999975 445553 34789999999988 44454 456678999999998644
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.7e-27 Score=214.15 Aligned_cols=201 Identities=18% Similarity=0.182 Sum_probs=123.1
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
|++++++.+| .+..+++|++|++++|+ +...+ +..+++|++|++++|.+.+ ++ +..+++|++|++++|.+.
T Consensus 49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 49 CHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp CCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCS
T ss_pred ccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCC
Confidence 3455555554 45666666666666665 33332 4556666666666665443 22 556666666666666544
Q ss_pred CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
. ++ +..+++|+.|++++|.+..++ ++.+++|++|++++|...+.+ .+..+++|+.|++++|...+ +| +..+
T Consensus 120 ~-l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l 190 (457)
T 3bz5_A 120 K-LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQN 190 (457)
T ss_dssp C-CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTC
T ss_pred e-ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccC
Confidence 3 32 555566666666666666543 555666666666666544444 24556667777776654443 33 5566
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP 229 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~ 229 (329)
++|+.|++++|.+..++ +..+++|+.|++++|.++++| +..+++|+.|++++|+++.++
T Consensus 191 ~~L~~L~l~~N~l~~~~--------l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKLD--------LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TTCCEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCCEEECcCCcCCeec--------cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 66777777776666542 455677777777777777765 667777777777777776554
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.7e-27 Score=211.69 Aligned_cols=258 Identities=13% Similarity=0.093 Sum_probs=204.8
Q ss_pred CCCCchhhhhh-hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQLWD-SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++++++.++. .+..+++|++|++++|. +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 56788888764 78999999999999998 5555442 688999999999999886643334467899999999999887
Q ss_pred CCCCcc-cCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCccc-CCcc---------------ccCCCCCcEE
Q 020238 80 LKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKS-LPSS---------------LCKLKSLNSI 142 (329)
Q Consensus 80 ~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~---------------~~~l~~L~~L 142 (329)
....+. +..+++|+.|++++|.+..++ +..+++|+++++++|.+... .+.. ....++|+.|
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L 231 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred CccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence 655553 667799999999999988654 45566777766666544321 1100 1124679999
Q ss_pred eccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCC
Q 020238 143 YLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK 222 (329)
Q Consensus 143 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 222 (329)
++++|..... ..+..+++|+.|++++|.+..++... +..+++|+.|++++|.+++++..+..+++|+.|++++
T Consensus 232 ~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 232 KLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP-----FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG-----GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS
T ss_pred ECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH-----ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCC
Confidence 9999776653 56788999999999999998764433 5778999999999999999988888899999999999
Q ss_pred CcCccCChhhhcCCccceecccccccccccC-CCCCCccEEeccCCCCC
Q 020238 223 NNFERLPESIIHLSKLAYLKLSYCERLQSLP-KLPCNLSELDAHHCTAL 270 (329)
Q Consensus 223 ~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~~l 270 (329)
|+++.+|..+..+++|+.|++++|+. +.++ ..+++|+.|++++|+.-
T Consensus 305 n~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 305 NHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSSCEE
T ss_pred CcceecCccccccCcCCEEECCCCcc-ceeCchhhccCCEEEcCCCCcc
Confidence 99999998899999999999999874 4444 66789999999999753
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.8e-27 Score=221.20 Aligned_cols=125 Identities=15% Similarity=0.073 Sum_probs=94.8
Q ss_pred CCCCchhhhhh-hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQLWD-SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++++++.++. .+..+++|++|++++|. +...+.. .+.++++|++|++++|.+....|..+.++++|++|++++|.+
T Consensus 39 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 39 LSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred CCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 46677777754 67888888888888887 4444331 678888888888888887766678888888888888888876
Q ss_pred CCCC-cccCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcc
Q 020238 80 LKTL-PEISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLK 127 (329)
Q Consensus 80 ~~~~-~~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~ 127 (329)
.... ..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+..
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 5444 24666788888888888887 467788888888888888876543
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.1e-27 Score=217.39 Aligned_cols=164 Identities=17% Similarity=0.100 Sum_probs=103.6
Q ss_pred cCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-cchh-hcC
Q 020238 134 CKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPEN-LGQ 211 (329)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~-~~~ 211 (329)
..+++|++|++++|...+..|..+..+++|+.|++++|.+..++..... +..+++|+.|++++|.+++ +|.. +..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM---TKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT---TTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh---hcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 3455666666666666655666666667777777777766654432111 4556677777777777766 5543 555
Q ss_pred CCCccEEEcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCC-CCCCCCCcEE
Q 020238 212 LSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGL-VFPSRDPQYF 286 (329)
Q Consensus 212 ~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L 286 (329)
+++|+.|++++|+++ .++..+. ++|+.|++++|. ++.+|. .+++|+.|++++|. ++.+|.. +..+++|++|
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCE
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEE
Confidence 677777777777665 3333222 577777777763 456663 34678888888876 4456655 5667778888
Q ss_pred EcCCCcccchhHHHHHhh
Q 020238 287 DLRNNLKLDRNEIREILE 304 (329)
Q Consensus 287 ~i~~~~~l~~~~~~~~~~ 304 (329)
++++|+--.+.....+..
T Consensus 503 ~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 503 WLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp ECCSCCBCCCHHHHHHHH
T ss_pred EecCCCcCCCcchHHHHH
Confidence 888887666665555433
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.2e-27 Score=222.87 Aligned_cols=286 Identities=19% Similarity=0.156 Sum_probs=236.0
Q ss_pred CchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238 4 GNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL 83 (329)
Q Consensus 4 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 83 (329)
++++.....+..+++|+.|+++++. +...+ .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|......
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~---~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVS-IKYLE---DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCC-CCCCC---CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred ccccccccccccCCCCCEEEecCcc-chhhh---hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence 3444443447889999999999998 55555 577899999999999987 7777 44 9999999999998665544
Q ss_pred cccCCCCCccEEEecCcccccc---chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC-cccCC
Q 020238 84 PEISSAGNIEVMYLNGTAIEEL---PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGN 159 (329)
Q Consensus 84 ~~~~~~~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~ 159 (329)
.+..+++|+.|++++|.+... +..+..+++|++|++++|.+ ..++..+..+++|+.|++++|...+..+ ..+..
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 556779999999999998854 77889999999999999875 4466778899999999999988877766 57889
Q ss_pred CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC--cchhhcCCCCccEEEcCCCcCccC-ChhhhcCC
Q 020238 160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERL-PESIIHLS 236 (329)
Q Consensus 160 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~ 236 (329)
+++|+.|++++|.+....... +..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++.+ |..+..++
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGI-----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTT-----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccCCEEECcCCCCCccchhh-----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 999999999999988654443 5778999999999999987 677889999999999999999855 57789999
Q ss_pred ccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCC-CCcEEEcCCCcccchhHHHHHhh
Q 020238 237 KLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSR-DPQYFDLRNNLKLDRNEIREILE 304 (329)
Q Consensus 237 ~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~L~i~~~~~l~~~~~~~~~~ 304 (329)
+|++|++++|...+..| ..+++|+.|++++|. ++.+|..+...+ +|++|++++|+-..+.....+..
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~ 568 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQ 568 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHT
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccCCccHHHHH
Confidence 99999999987655445 345789999999998 567877776665 59999999998877666555433
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.8e-28 Score=211.37 Aligned_cols=242 Identities=19% Similarity=0.207 Sum_probs=211.1
Q ss_pred CCCchh---hhhhhccCCCCceEEEecC-CCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCC
Q 020238 2 PHGNIQ---QLWDSVQHNGKLKQIISRA-SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGC 77 (329)
Q Consensus 2 ~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 77 (329)
++++++ .+|..+..+++|++|++++ +......|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh--hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence 456676 4788899999999999996 664445665 7899999999999999988889999999999999999999
Q ss_pred CCCCCCc-ccCCCCCccEEEecCcccc-ccchhhhcCC-CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC
Q 020238 78 SKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLS-GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP 154 (329)
Q Consensus 78 ~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 154 (329)
.+.+.+| .+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+....|..+..+. |++|++++|...+..|
T Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence 8876666 5677899999999999998 7888999998 999999999998878888888887 9999999998887888
Q ss_pred cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC-CcchhhcCCCCccEEEcCCCcCc-cCChhh
Q 020238 155 NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELPENLGQLSLLLELYLEKNNFE-RLPESI 232 (329)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l 232 (329)
..+..+++|+.|++++|.+...+.. +..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+|..
T Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKNSLAFDLGK------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGG------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred HHHhcCCCCCEEECCCCceeeecCc------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 8899999999999999998754433 366899999999999999 48888999999999999999998 77754
Q ss_pred hcCCccceecccccccccccC
Q 020238 233 IHLSKLAYLKLSYCERLQSLP 253 (329)
Q Consensus 233 ~~~~~L~~L~l~~~~~l~~~~ 253 (329)
..+++|+.+++++|+.+...|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 889999999999998776544
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5e-28 Score=224.59 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=131.6
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++++++.+|..+. ++|++|++++|+ +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFNK-ITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSSC-CCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred CCCccccccccCC--CCccEEECcCCc-cCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 5678889987664 799999999998 5554332 68999999999999999887777889999999999999998776
Q ss_pred CCcc-cCCCCCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCccc
Q 020238 82 TLPE-ISSAGNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNEL 157 (329)
Q Consensus 82 ~~~~-~~~~~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~ 157 (329)
..+. +..+++|++|++++|.+.. .+..++.+++|++|++++|...+.++ ..+.++++|++|++++|...+..|..+
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 6665 7788999999999999984 46778999999999999988666554 568889999999999988777666666
Q ss_pred CCCccCcEE
Q 020238 158 GNLEALNSL 166 (329)
Q Consensus 158 ~~l~~L~~L 166 (329)
..+++|+.|
T Consensus 169 ~~l~~L~~L 177 (549)
T 2z81_A 169 KSIRDIHHL 177 (549)
T ss_dssp TTCSEEEEE
T ss_pred hccccCceE
Confidence 554333333
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=219.18 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=95.9
Q ss_pred CCCCchhhhh-hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQLW-DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++|+++.++ ..+..+++|++|++++|+ +...+.. .+.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus 35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp CCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ccCCccCccChhHhhCCCCceEEECCCCc-CCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 4677777764 357888899999999887 5554432 678888999999998887666667788888899999988765
Q ss_pred CCCCc-ccCCCCCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCCccc
Q 020238 80 LKTLP-EISSAGNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKRLKS 128 (329)
Q Consensus 80 ~~~~~-~~~~~~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~ 128 (329)
....+ .+..+++|++|++++|.+.. +|..++.+++|++|++++|.+...
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 54332 36677889999999888874 678888888888888888765443
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=8.4e-27 Score=226.40 Aligned_cols=290 Identities=19% Similarity=0.156 Sum_probs=194.1
Q ss_pred CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++|+++.+ +..+..+++|++|++++|..+..++.. .+.++++|++|++++|.+....|..+..+++|++|++++|.+
T Consensus 31 Ls~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 31 LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred CCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 356677766 456778888888888888655555332 678888888888888887777788888888888888888877
Q ss_pred CCCCcc---cCCCCCccEEEecCcccccc--chhhhcCCCCCEEEcCCCCCcccCCccccCC--CCCcEEeccCCCCCCC
Q 020238 80 LKTLPE---ISSAGNIEVMYLNGTAIEEL--PSSIECLSGLSALYLDHCKRLKSLPSSLCKL--KSLNSIYLRWCSSLKS 152 (329)
Q Consensus 80 ~~~~~~---~~~~~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~ 152 (329)
.+..+. +..+++|+.|++++|.+..+ +..++.+++|++|++++|.+....+..+..+ ++|+.|++++|.....
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence 654443 66678888888888888754 3467888888888888887766666666555 6777777777766665
Q ss_pred CCcccCCCcc------CcEEeccCccccc-cChhhhh------------------------------ccccCC--CCCcc
Q 020238 153 LPNELGNLEA------LNSLNAEGTAIRE-VPLSIVR------------------------------LNNFDG--LQNLT 193 (329)
Q Consensus 153 ~~~~~~~l~~------L~~L~l~~~~l~~-~~~~~~~------------------------------~~~~~~--~~~L~ 193 (329)
.+..+..+.+ |+.|++++|.+.. .+..+.. ...+.+ .++|+
T Consensus 190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence 5555554444 7888887775441 1111110 000112 25677
Q ss_pred EEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC---CCCCCccEEeccCCC
Q 020238 194 SLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCT 268 (329)
Q Consensus 194 ~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~ 268 (329)
.|++++|.+.++ +..+..+++|+.|++++|+++.+ +..+..+++|++|++++|......+ ..+++|+.|++++|.
T Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred EEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence 777777777764 44566677777777777777744 4566777777777777765432223 234677777777775
Q ss_pred CCcCCC-CCCCCCCCCcEEEcCCCc
Q 020238 269 ALESSP-GLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 269 ~l~~~~-~~~~~~~~L~~L~i~~~~ 292 (329)
. +.++ ..+..+++|++|++++|.
T Consensus 350 i-~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 350 I-AIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp C-CCCCSSCSCSCCCCCEEEEETCC
T ss_pred C-CccChhhhcCCCCCCEEECCCCC
Confidence 3 3333 344556677777777663
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.6e-27 Score=218.93 Aligned_cols=273 Identities=11% Similarity=0.069 Sum_probs=168.3
Q ss_pred CCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 2 PHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 2 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
+++.++.+|.. +..+++|++|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+.
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 45556666544 4667788888888776 4444332 5677888888888887766655666677888888888887655
Q ss_pred CCCcc-cCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC-------
Q 020238 81 KTLPE-ISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK------- 151 (329)
Q Consensus 81 ~~~~~-~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------- 151 (329)
...+. +..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.... +..+++|+.|++++|....
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchh
Confidence 43333 355678888888888777554 35777788888888877654321 2223333333333322211
Q ss_pred -----------CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEE
Q 020238 152 -----------SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELY 219 (329)
Q Consensus 152 -----------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~ 219 (329)
.++.. ..++|+.|++++|.+...+ . +..+++|+.|++++|.++++ |..+..+++|+.|+
T Consensus 214 ~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~-~------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 214 EELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA-W------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp SEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred heeeccCCcccccccc--cCCCCCEEECCCCCCCCCh-h------hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 11111 1235666666666655431 1 35567777777777777763 55666777777777
Q ss_pred cCCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 220 LEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 220 l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+++|.++.+|..+..+++|+.|++++|.. +.+|. .+++|+.|++++|.. ..++ ...++.|+.|++++|+
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCCC-CCcC--hhhcCCCCEEEeeCCC
Confidence 77777776666666677777777777643 34542 236777777777763 3332 3444567777777765
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.1e-26 Score=208.26 Aligned_cols=227 Identities=25% Similarity=0.338 Sum_probs=102.2
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++++++.++ ++..+++|++|++++|. +...+. +..+++|++|++++|.+....+ +..+++|++|++++|.+.
T Consensus 54 ~~~~i~~l~-~~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~- 125 (466)
T 1o6v_A 54 DRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT- 125 (466)
T ss_dssp CSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred CCCCCccCc-chhhhcCCCEEECCCCc-cCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-
Confidence 344455553 35556666666666665 333332 4555566666665554433222 445555555555554332
Q ss_pred CCcccCCCCCccEEEecCccccccch--------------------hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcE
Q 020238 82 TLPEISSAGNIEVMYLNGTAIEELPS--------------------SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNS 141 (329)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~~~i~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 141 (329)
.++.+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. + ..+..+++|++
T Consensus 126 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 203 (466)
T 1o6v_A 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLES 203 (466)
T ss_dssp CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred CChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCE
Confidence 22334444555555555444432211 13344555555555544322 1 12334444444
Q ss_pred EeccCCCCCCCCC--------------------cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC
Q 020238 142 IYLRWCSSLKSLP--------------------NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG 201 (329)
Q Consensus 142 L~l~~~~~~~~~~--------------------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 201 (329)
|++++|......+ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|.
T Consensus 204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 204 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQ 276 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSC
T ss_pred EEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-------hhcCCCCCEEECCCCc
Confidence 4444433322211 123333444444444444333221 2334445555555554
Q ss_pred CCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238 202 ITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 202 l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
+++++. +..+++|+.|++++|+++.++. +..+++|+.|++++|.
T Consensus 277 l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 277 ISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred cCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc
Confidence 444433 4444555555555554444332 3444555555555443
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=8e-26 Score=196.45 Aligned_cols=260 Identities=20% Similarity=0.182 Sum_probs=214.5
Q ss_pred CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEE
Q 020238 18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY 96 (329)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 96 (329)
+++.++++++. +...|. .+ .++++.|++++|.+....+..+..+++|++|++++|.+....| .+..+++|++|+
T Consensus 32 ~l~~l~~~~~~-l~~lp~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPK--DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSC-CCSCCC--SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCC-ccccCc--cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 79999999876 666665 23 3789999999998777666678899999999999988776645 567779999999
Q ss_pred ecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC--CCCcccCCCccCcEEeccCcccc
Q 020238 97 LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK--SLPNELGNLEALNSLNAEGTAIR 174 (329)
Q Consensus 97 l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~ 174 (329)
+++|.+..+|..+. ++|++|++++|.+....+..+.++++|+.|++++|.... ..+..+..+++|+.|++++|.+.
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99999998887654 899999999988776666678899999999999987753 55677889999999999999999
Q ss_pred ccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccccccccc
Q 020238 175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSL 252 (329)
Q Consensus 175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~ 252 (329)
.+|... .++|++|++++|.++++ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|. ++.+
T Consensus 185 ~l~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 255 (330)
T 1xku_A 185 TIPQGL--------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKV 255 (330)
T ss_dssp SCCSSC--------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSC
T ss_pred cCCccc--------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccC
Confidence 887544 37999999999999985 567889999999999999999665 578899999999999985 5577
Q ss_pred CC---CCCCccEEeccCCCCCcCCCCCCC-------CCCCCcEEEcCCCccc
Q 020238 253 PK---LPCNLSELDAHHCTALESSPGLVF-------PSRDPQYFDLRNNLKL 294 (329)
Q Consensus 253 ~~---~~~~L~~L~l~~c~~l~~~~~~~~-------~~~~L~~L~i~~~~~l 294 (329)
|. .+++|++|++++|. ++.++...+ ....++.+++++++.-
T Consensus 256 p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccc
Confidence 74 34789999999998 444543333 2357889999999753
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.5e-26 Score=208.94 Aligned_cols=260 Identities=20% Similarity=0.229 Sum_probs=177.5
Q ss_pred CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccE
Q 020238 15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV 94 (329)
Q Consensus 15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 94 (329)
.+++++.|++.++. +...+ .+..+++|++|++++|.+... +. +..+++|++|++++|.+....+ +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~-i~~l~---~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSID---GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSC-CCCCT---TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred HhccccEEecCCCC-CccCc---chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 36789999999987 55555 477899999999999886554 43 8899999999999987665444 888899999
Q ss_pred EEecCccccccchhhhcCCCCCEEEcCCCCCcccCC--------------------ccccCCCCCcEEeccCCCCCCCCC
Q 020238 95 MYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP--------------------SSLCKLKSLNSIYLRWCSSLKSLP 154 (329)
Q Consensus 95 L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~l~~L~~L~l~~~~~~~~~~ 154 (329)
|++++|.+..++. +..+++|++|++++|.+.. ++ ..+.++++|+.|++++|.... +
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~- 192 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I- 192 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-
Confidence 9999999998765 8899999999999986533 11 125677889999999976543 3
Q ss_pred cccCCCccCcEEeccCccccccChhhhh----------------ccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEE
Q 020238 155 NELGNLEALNSLNAEGTAIREVPLSIVR----------------LNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLEL 218 (329)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L 218 (329)
..+..+++|+.|++++|.+...+. +.. +..+..+++|+.|++++|.+++++. +..+++|+.|
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 346788889999998888775543 110 0113344555666666665555443 5556666666
Q ss_pred EcCCCcCccCChhhhcCCccceecccccccccccC--CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCC
Q 020238 219 YLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291 (329)
Q Consensus 219 ~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~ 291 (329)
++++|.++.++. +..+++|+.|++++|.. +.++ ..+++|+.|++++|...+ ++. ...+++|++|++++|
T Consensus 271 ~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 271 KLGANQISNISP-LAGLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSSCCSC-CGG-GGGCTTCCEEECCSS
T ss_pred ECCCCccCcccc-ccCCCccCeEEcCCCcc-cCchhhcCCCCCCEEECcCCcCCC-chh-hccCccCCEeECCCC
Confidence 666666665554 56666777777766543 2222 234566666666665332 222 334455666666555
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.8e-26 Score=216.05 Aligned_cols=271 Identities=18% Similarity=0.126 Sum_probs=213.5
Q ss_pred CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCcc
Q 020238 15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIE 93 (329)
Q Consensus 15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~ 93 (329)
.+.+++.++++++. +...|.. .+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCC-CCCcCHH-HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 45789999999987 6666653 578899999999999998777777899999999999999987766554 56779999
Q ss_pred EEEecCccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 94 VMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 94 ~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
.|++++|.+..+|.. ++.+++|++|++++|.+....+..+..+++|+.|++++|..... + +..+++|+.+++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCc
Confidence 999999999988876 58999999999999988777777899999999999999876543 2 3334555555555554
Q ss_pred ccccC--hhhhhccc---------cCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccce
Q 020238 173 IREVP--LSIVRLNN---------FDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAY 240 (329)
Q Consensus 173 l~~~~--~~~~~~~~---------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~ 240 (329)
+..++ ..+..+.. -...++|+.|++++|.+++. ..+..+++|+.|++++|.++.+ |..+..+++|+.
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 44221 11100000 11246899999999999985 5688899999999999999854 688999999999
Q ss_pred ecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcc
Q 020238 241 LKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLK 293 (329)
Q Consensus 241 L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~ 293 (329)
|++++|. ++.+| ..+++|+.|++++|. +..+|..+..+++|++|++++|.-
T Consensus 283 L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 283 LYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCC
Confidence 9999976 44455 346899999999997 457777777788999999999853
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.5e-26 Score=198.19 Aligned_cols=274 Identities=19% Similarity=0.179 Sum_probs=214.3
Q ss_pred CCchhhhhhhcc-CCC-----CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecC
Q 020238 3 HGNIQQLWDSVQ-HNG-----KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWG 76 (329)
Q Consensus 3 ~~~~~~l~~~~~-~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (329)
.+.++.+|..+. .|| +++.++++++. +...|. .+ .++|+.|++++|.+....+..+.++++|++|++++
T Consensus 13 ~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~-l~~ip~--~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 87 (332)
T 2ft3_A 13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLG-LKAVPK--EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN 87 (332)
T ss_dssp ------------CCCCSSCEEETTEEECCSSC-CSSCCS--CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCccccCCCcccCCCCCCCcccCCEEECCCCC-ccccCC--CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence 455667765442 333 79999999887 666765 23 47999999999987776677899999999999999
Q ss_pred CCCCCCCc-ccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC--CC
Q 020238 77 CSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK--SL 153 (329)
Q Consensus 77 ~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~ 153 (329)
|.+....+ .+..+++|++|++++|.+..+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.... ..
T Consensus 88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 88 NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 98765545 56777999999999999998887654 899999999988766555668899999999999987753 55
Q ss_pred CcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc-hhhcCCCCccEEEcCCCcCccCC-hh
Q 020238 154 PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP-ENLGQLSLLLELYLEKNNFERLP-ES 231 (329)
Q Consensus 154 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~i~~~~-~~ 231 (329)
+..+..+ +|+.|++++|.+..+|..+ .++|++|++++|.+++++ ..+..+++|+.|++++|+++.++ ..
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~--------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDL--------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSS--------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred cccccCC-ccCEEECcCCCCCccCccc--------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 6677777 9999999999999887654 378999999999999865 57888999999999999999776 57
Q ss_pred hhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCC-C------CCCCcEEEcCCCccc
Q 020238 232 IIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVF-P------SRDPQYFDLRNNLKL 294 (329)
Q Consensus 232 l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~-~------~~~L~~L~i~~~~~l 294 (329)
+..+++|+.|++++|. ++.+|. .+++|+.|++++|.. +.++...+ . ...|+.|++++|+..
T Consensus 237 ~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecCccc
Confidence 8999999999999975 557775 347899999999874 44443222 2 356889999999753
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=214.57 Aligned_cols=139 Identities=22% Similarity=0.206 Sum_probs=97.7
Q ss_pred cCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc--cCChhhh
Q 020238 157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE--RLPESII 233 (329)
Q Consensus 157 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~--~~~~~l~ 233 (329)
+..+++|+.|++++|.+...+.. ..+..+++|+.|++++|.+.+ .+..+..+++|+.|++++|.++ .+|..+.
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTS----CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccCCCCEEEccCCccccccch----hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 44455555555555554433220 115667888888888888776 5556778888999999998886 5777888
Q ss_pred cCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHH
Q 020238 234 HLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEI 299 (329)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~ 299 (329)
.+++|+.|++++|......|. .+++|++|++++|...+..+..+..+++|++|++++|+--.+...
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 889999999998865544453 347899999999875444445567788899999999876655443
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-26 Score=201.23 Aligned_cols=218 Identities=27% Similarity=0.350 Sum_probs=135.4
Q ss_pred CcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccC
Q 020238 67 EFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRW 146 (329)
Q Consensus 67 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 146 (329)
..+++|++++|.+....+.+..+++|++|++++|.+..+|..++.+++|++|++++|.+. .+|..+..+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 344444444443332111233334444444444444444444555555555555554433 4444455555555555555
Q ss_pred CCCCCCCCccc---------CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccE
Q 020238 147 CSSLKSLPNEL---------GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE 217 (329)
Q Consensus 147 ~~~~~~~~~~~---------~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 217 (329)
|+..+.+|..+ .++++|+.|++++|.+..+|..+ ..+++|++|++++|.++++|..+..+++|+.
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l------~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI------ANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGG------GGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhh------cCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 55554444433 33677777777777777666543 4467777777777777777777777777888
Q ss_pred EEcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCC
Q 020238 218 LYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291 (329)
Q Consensus 218 L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~ 291 (329)
|++++|++. .+|..+..+++|+.|++++|+..+.+|. .+++|+.|++++|+.++.+|..+..+++++.+++...
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 888777655 6666777777788888887777777764 3467788888888877888877777777888777653
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.2e-27 Score=206.43 Aligned_cols=260 Identities=15% Similarity=0.101 Sum_probs=207.9
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++++++.+|..+. ++|++|++++|. +...+.. .+.++++|++|++++|.+....+..+.++++|++|++++|.+..
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred CCCCccccccccc--ccCcEEECCCCc-CcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 5678888887654 589999999988 5555542 67889999999999998777767788899999999999987765
Q ss_pred CCcc-cCCCCCccEEEecCccccccch--hhhcCCCCCEEEcCCCCCccc-CCccccCCCCCcEEeccCCCCCCCCCccc
Q 020238 82 TLPE-ISSAGNIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKS-LPSSLCKLKSLNSIYLRWCSSLKSLPNEL 157 (329)
Q Consensus 82 ~~~~-~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 157 (329)
..+. +..+++|++|++++|.+..++. .+..+++|++|++++|...+. .+..+.++++|++|++++|......|..+
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 4444 6777999999999999998876 688899999999999854444 45678889999999999988877778889
Q ss_pred CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch----hhcCCCCccEEEcCCCcCc-----cC
Q 020238 158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLSLLLELYLEKNNFE-----RL 228 (329)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~i~-----~~ 228 (329)
..+++|+.|++++|.+..++... +..+++|+.|++++|.+++++. .....+.++.++++++.++ .+
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLEIF-----VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHHHH-----HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred hccccCCeecCCCCccccchhhh-----hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 99999999999999988776554 3457899999999998887432 1234667888888888775 46
Q ss_pred ChhhhcCCccceecccccccccccCC----CCCCccEEeccCCCCCc
Q 020238 229 PESIIHLSKLAYLKLSYCERLQSLPK----LPCNLSELDAHHCTALE 271 (329)
Q Consensus 229 ~~~l~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~l~ 271 (329)
|..+..+++|+.|++++|. ++.+|. .+++|++|++++|+...
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 7778899999999999975 456763 35789999999998543
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=9.7e-26 Score=214.42 Aligned_cols=287 Identities=20% Similarity=0.211 Sum_probs=184.8
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++.+++++|..+. +++++|++++|. +...+.. .+.++++|++|++++|.+....|..+.++++|++|++++|.+..
T Consensus 12 s~~~L~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 12 SHLKLTQVPDDLP--TNITVLNLTHNQ-LRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp CSSCCSSCCSCSC--TTCSEEECCSSC-CCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred CCCCccccccccC--CCCcEEECCCCC-CCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence 4556777765553 577888888776 4444432 56777778888887777666666667777778888887766543
Q ss_pred CCc-ccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc--
Q 020238 82 TLP-EISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL-- 157 (329)
Q Consensus 82 ~~~-~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-- 157 (329)
..+ .+..+++|++|++++|.+..++ ..++.+++|++|++++|.+....+..+.++++|++|++++|......+..+
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 333 3566677778888777777555 456777777777777777666556666677777777777765544333332
Q ss_pred CCCccCcEEeccCccccccChhh-hhcc---------------------------------------------ccCCC--
Q 020238 158 GNLEALNSLNAEGTAIREVPLSI-VRLN---------------------------------------------NFDGL-- 189 (329)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~-~~~~---------------------------------------------~~~~~-- 189 (329)
..+++|+.|++++|.+..++... ..+. .+..+
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 23456666776666655433211 0000 02222
Q ss_pred CCccEEEcCCCCCCCcc-hhhcCCCCccEEEcCCCcCcc-CChhhhcCCccceeccccccccc-----ccC-------CC
Q 020238 190 QNLTSLYLTDCGITELP-ENLGQLSLLLELYLEKNNFER-LPESIIHLSKLAYLKLSYCERLQ-----SLP-------KL 255 (329)
Q Consensus 190 ~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~l~-----~~~-------~~ 255 (329)
++|+.|++++|.+++++ ..+..+++|+.|++++|+++. .+..+..+++|+.|++++|.... .+| ..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 23777777777777643 456777788888888877773 34567777777777777653221 122 23
Q ss_pred CCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 256 PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 256 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+++|++|++++|...+..+..+..+++|++|++++|.
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 5788888888887655555666777888888888874
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2e-26 Score=198.14 Aligned_cols=220 Identities=22% Similarity=0.242 Sum_probs=105.2
Q ss_pred ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC---CcccCCCCCccEEEecCccccccchhhhcCCCCCEEE
Q 020238 43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT---LPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALY 119 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 119 (329)
++|++|++++|.+...-+..+..+++|++|++++|.+... ...+...++|++|++++|.+..++..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3455555555443321112234455555555555443211 1122333455555555555554444455555555555
Q ss_pred cCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc--cChhhhhccccCCCCCccEEE
Q 020238 120 LDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE--VPLSIVRLNNFDGLQNLTSLY 196 (329)
Q Consensus 120 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~~~L~~L~ 196 (329)
+++|.+....+ ..+..+++|++|++++|......+..+..+++|+.|++++|.+.. .+.. +..+++|+.|+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~l~~L~~L~ 181 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------FTELRNLTFLD 181 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC------CTTCTTCCEEE
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH------HhhCcCCCEEE
Confidence 55544333222 234455555555555554444444445555555555555555442 2211 34455555555
Q ss_pred cCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccCC----CCCCccEEeccCCC
Q 020238 197 LTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLPK----LPCNLSELDAHHCT 268 (329)
Q Consensus 197 l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~ 268 (329)
+++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|...+..+. .+++|+.|++++|+
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 555555553 334555555555555555555443 2445555555555555543332221 11355566665555
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.1e-25 Score=203.45 Aligned_cols=249 Identities=17% Similarity=0.131 Sum_probs=197.7
Q ss_pred ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCc
Q 020238 13 VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNI 92 (329)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 92 (329)
+..+++|++|++++|. +...+ .+..+++|++|++++|.+.+ ++ +..+++|++|++++|.+.. ++ +..+++|
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~~---~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDMT---GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCCT---TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTC
T ss_pred hhHcCCCCEEEccCCC-cccCh---hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee-cCCCCcC
Confidence 4568999999999997 66554 57889999999999998655 44 7889999999999988654 33 7778999
Q ss_pred cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
++|++++|.+..++ ++.+++|++|++++|.+.. ++ +..+++|++|++++|...+.+ .+..+++|+.|++++|.
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 99999999999875 7899999999999988655 32 778999999999998777666 47789999999999999
Q ss_pred ccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceeccccccccccc
Q 020238 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSL 252 (329)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~ 252 (329)
++.++ +..+++|+.|++++|.+++++ +..+++|+.|++++|+++.+| +..+++|+.|++++|..- .+
T Consensus 182 l~~l~--------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~-~~ 248 (457)
T 3bz5_A 182 ITELD--------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT-EL 248 (457)
T ss_dssp CCCCC--------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-CC
T ss_pred cceec--------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC-Cc
Confidence 98875 466899999999999999974 788999999999999999987 788999999999997643 33
Q ss_pred C-CCCCCc----------cEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 253 P-KLPCNL----------SELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 253 ~-~~~~~L----------~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
+ ..+++| +.|++++|..++.+| ...+++|+.|++++|.
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 3 333433 344444444443333 1234455555555554
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.7e-25 Score=209.67 Aligned_cols=239 Identities=21% Similarity=0.176 Sum_probs=124.2
Q ss_pred CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++++++.+ +..+..+++|++|++++|. +...+.. .+.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 56 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 56 VGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDK-TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp CCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred CCCCccCccCHHHHhcccCcCEEECCCCc-cCccChh-hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence 345556655 3445667777777777765 4444432 466677777777777665544445566677777777777665
Q ss_pred CCCCc-ccCCCCCccEEEecCccccccchh-h--hcCCCCCEEEcCCCCCcccC--------------------------
Q 020238 80 LKTLP-EISSAGNIEVMYLNGTAIEELPSS-I--ECLSGLSALYLDHCKRLKSL-------------------------- 129 (329)
Q Consensus 80 ~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~-~--~~l~~L~~L~l~~~~~~~~~-------------------------- 129 (329)
....+ .+..+++|++|++++|.+..++.. + ..+++|++|++++|.+....
T Consensus 134 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 213 (680)
T 1ziw_A 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213 (680)
T ss_dssp SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence 54433 244456666666666665544322 1 13355555555555433322
Q ss_pred -------------------------CccccCCC--CCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhh
Q 020238 130 -------------------------PSSLCKLK--SLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVR 182 (329)
Q Consensus 130 -------------------------~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 182 (329)
+..+..++ +|++|++++|......+..+..+++|+.|++++|.+...+...
T Consensus 214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 291 (680)
T 1ziw_A 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-- 291 (680)
T ss_dssp HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--
T ss_pred HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--
Confidence 22232222 2555555555544444445555666666666666555433221
Q ss_pred ccccCCCCCccEEEcCCCCCC------Ccch----hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccc
Q 020238 183 LNNFDGLQNLTSLYLTDCGIT------ELPE----NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYC 246 (329)
Q Consensus 183 ~~~~~~~~~L~~L~l~~~~l~------~~~~----~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~ 246 (329)
+..+++|+.|+++++... .+|. .+..+++|+.|++++|.++.++ ..+..+++|++|++++|
T Consensus 292 ---~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 292 ---LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp ---TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ---hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 233444444444433211 1111 2344555555555555555333 33455555555555554
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.9e-26 Score=195.76 Aligned_cols=216 Identities=28% Similarity=0.412 Sum_probs=140.7
Q ss_pred ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccchhhhcCCCCCEEEcC
Q 020238 43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLD 121 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~ 121 (329)
++++.|++++|.+. .+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45666666665533 45555555666666666665544 333 3444566666666666666666666667777777777
Q ss_pred CCCCcccCCcccc---------CCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCc
Q 020238 122 HCKRLKSLPSSLC---------KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNL 192 (329)
Q Consensus 122 ~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L 192 (329)
+|...+.+|..+. ++++|++|++++|... .+|..+..+++|+.|++++|.+..++..+ ..+++|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l------~~l~~L 231 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAI------HHLPKL 231 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGG------GGCTTC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhh------ccCCCC
Confidence 7666666655443 3777777777776554 66666777777777777777777666543 456777
Q ss_pred cEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceecccccccccccCCC---CCCccEEeccCC
Q 020238 193 TSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPKL---PCNLSELDAHHC 267 (329)
Q Consensus 193 ~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c 267 (329)
+.|++++|.+.+ +|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+..+.+|+. +++|+.+.+..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 777777776654 6666777777777777777554 66767777777777777777777777743 355666655543
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-27 Score=206.70 Aligned_cols=281 Identities=15% Similarity=0.061 Sum_probs=213.8
Q ss_pred CCCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
++++++.+.+.. +..+++|++|++++|. +...+. ..+..+++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus 17 ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 17 VTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp CCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCH-HHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred ccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCH-HHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 356677766544 4677899999999987 555442 267889999999999988765443 78899999999999864
Q ss_pred CCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc-C
Q 020238 80 LKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL-G 158 (329)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~ 158 (329)
.. + ...++|+.|++++|.+..++.. .+++|++|++++|.+....+..+..+++|++|++++|......+..+ .
T Consensus 93 ~~-l---~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 93 QE-L---LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp EE-E---EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred cc-c---cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 42 2 2348899999999998866543 47889999999988776666678888999999999987776555555 4
Q ss_pred CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCcc
Q 020238 159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKL 238 (329)
Q Consensus 159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L 238 (329)
.+++|+.|++++|.+..++. ...+++|+.|++++|.+++++..+..+++|+.|++++|+++.+|..+..+++|
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~-------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKG-------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp GTTTCCEEECTTSCCCEEEC-------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred ccCcCCEEECCCCcCccccc-------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence 68899999999999887643 23478999999999999998888888999999999999999989888889999
Q ss_pred ceecccccccc-cccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhH
Q 020238 239 AYLKLSYCERL-QSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNE 298 (329)
Q Consensus 239 ~~L~l~~~~~l-~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~ 298 (329)
+.|++++|+.. ..++ ..+++|+.+++++|..++.............+..-..|..++...
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTH
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCChhH
Confidence 99999998765 3333 345678888888777665444433334445555555676665533
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=4.2e-25 Score=208.14 Aligned_cols=115 Identities=25% Similarity=0.245 Sum_probs=85.9
Q ss_pred CCCccEEEcCCCCCCC--cchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC----CCCCCccE
Q 020238 189 LQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSE 261 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~ 261 (329)
++.++.|++++|.+.+ .|..+..+++|+.|++++|+++.+ |..+.++++|++|++++|. ++.++ ..+++|+.
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCE
Confidence 3455555555554332 445667788999999999999865 5778899999999999975 44454 34579999
Q ss_pred EeccCCCCCcCCCCCCCCC-CCCcEEEcCCCcccchhHHHHHhh
Q 020238 262 LDAHHCTALESSPGLVFPS-RDPQYFDLRNNLKLDRNEIREILE 304 (329)
Q Consensus 262 L~l~~c~~l~~~~~~~~~~-~~L~~L~i~~~~~l~~~~~~~~~~ 304 (329)
|++++|...+..+..+... ++|++|++++|+--.+.....+..
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence 9999998666666666665 579999999999888887666544
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=3.7e-25 Score=214.91 Aligned_cols=285 Identities=18% Similarity=0.110 Sum_probs=221.7
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCccc-CccccCCCcccEEeecCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL-PPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~ 80 (329)
++.+++++|. -.+++++|++++|. +...... .+.++++|++|++++|.....+ |..+.++++|++|++++|.+.
T Consensus 12 s~~~L~~vP~---lp~~l~~LdLs~N~-i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 12 RFCNLTQVPQ---VLNTTERLLLSFNY-IRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp SCCCSSCCCS---SCTTCCEEEEESCC-CCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred cCCCCCCCCC---CCCCcCEEECCCCc-CCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 4678888886 45799999999998 4444332 7899999999999999766655 778999999999999999877
Q ss_pred CCCc-ccCCCCCccEEEecCccccc-cchh--hhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCc
Q 020238 81 KTLP-EISSAGNIEVMYLNGTAIEE-LPSS--IECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPN 155 (329)
Q Consensus 81 ~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~ 155 (329)
...| .+..+++|++|++++|.+.. ++.. +..+++|++|++++|.+....+ ..+.++++|++|++++|......+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 6655 56777999999999999984 4544 8899999999999998766544 5689999999999999888877777
Q ss_pred ccCCC--ccCcEEeccCcccccc-Chhhhhccc-cCCCCCccEEEcCCCCCCC-cchhh---------------------
Q 020238 156 ELGNL--EALNSLNAEGTAIREV-PLSIVRLNN-FDGLQNLTSLYLTDCGITE-LPENL--------------------- 209 (329)
Q Consensus 156 ~~~~l--~~L~~L~l~~~~l~~~-~~~~~~~~~-~~~~~~L~~L~l~~~~l~~-~~~~~--------------------- 209 (329)
.+..+ ++|+.|++++|.+... +..+..... +. ...|+.|++++|.++. .+..+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR-NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT-TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccc-cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 77766 7899999999988742 222211110 11 1249999999996653 22111
Q ss_pred ---------------cC--CCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC---CCCCCccEEeccCCC
Q 020238 210 ---------------GQ--LSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCT 268 (329)
Q Consensus 210 ---------------~~--~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~ 268 (329)
.. .++|+.|++++|.+..+ +..+..+++|+.|++++|......+ ..+++|++|++++|.
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 11 36899999999999854 5678899999999999987544434 345799999999998
Q ss_pred CCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 269 ALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 269 ~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
..+..+..+..+++|++|++++|.
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCC
Confidence 655557778888999999999883
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6.6e-25 Score=198.75 Aligned_cols=233 Identities=21% Similarity=0.301 Sum_probs=128.4
Q ss_pred CchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238 4 GNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL 83 (329)
Q Consensus 4 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 83 (329)
.+++.+|..+. +++++|++++|+ +...+.. .+..+++|++|++++|.+....+..+.++++|++|++++|.+....
T Consensus 64 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 64 RGLSEVPQGIP--SNTRYLNLMENN-IQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCcCccCCCCC--CCccEEECcCCc-CceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC
Confidence 34555554332 456666666665 3333221 4556666666666666555544555566666666666665544333
Q ss_pred cc-cCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 84 PE-ISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 84 ~~-~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
+. +..+++|+.|++++|.+..++. .+..+++|++|++++|...+.++. .+..+++|++|++++|.... +| .+..+
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l 217 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPL 217 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTC
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-ccccc
Confidence 22 3445666666666666664443 455566666666666544444332 35556666666666654432 22 34555
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCcc
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKL 238 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L 238 (329)
++|+.|++++|.+..++... +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGS-----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp TTCCEEECTTSCCSEECGGG-----GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccccEEECcCCcCcccCccc-----ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 66666666666665554333 45556666666666666653 334555666666666666666554 334556666
Q ss_pred ceecccccc
Q 020238 239 AYLKLSYCE 247 (329)
Q Consensus 239 ~~L~l~~~~ 247 (329)
+.|++++|+
T Consensus 293 ~~L~L~~Np 301 (452)
T 3zyi_A 293 VELHLHHNP 301 (452)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 666666654
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.5e-25 Score=188.45 Aligned_cols=203 Identities=24% Similarity=0.315 Sum_probs=123.9
Q ss_pred cccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCcc-cccc-chhhhcCCCCCEE
Q 020238 42 LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA-IEEL-PSSIECLSGLSAL 118 (329)
Q Consensus 42 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-i~~~-~~~~~~l~~L~~L 118 (329)
.++|++|++++|.+....+..+..+++|++|++++|.+....+ .+..+++|++|++++|. +..+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3466666666665554444455566666666666655443322 34445666666666664 5544 4455666667777
Q ss_pred EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238 119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198 (329)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 198 (329)
++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++... +..+++|+.|+++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-----FRGLHSLDRLLLH 185 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH-----hcCccccCEEECC
Confidence 77666655544555666666777777665555444444666667777777777666555443 4556677777777
Q ss_pred CCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccc
Q 020238 199 DCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 199 ~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l 249 (329)
+|.++++ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|+..
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 7766664 555666677777777777776555 34666677777777766544
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=196.48 Aligned_cols=235 Identities=21% Similarity=0.309 Sum_probs=162.3
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT 82 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 82 (329)
+.+++.+|..+. ++++.|++++|+ +...+.. .+.++++|++|++++|.+....+..+.++++|++|++++|.+...
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCC-CCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee
Confidence 456666665554 577888888776 4444322 677778888888888776665556677788888888887765533
Q ss_pred Cc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEeccCCCCCCCCCcccCC
Q 020238 83 LP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGN 159 (329)
Q Consensus 83 ~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 159 (329)
.+ .+..+++|+.|++++|.+..++. .+..+++|++|++++|.....++. .+.++++|++|++++|... .+| .+..
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~ 205 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP 205 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCC
Confidence 33 35556778888888887776554 567778888888877665555443 4677778888888776544 444 3667
Q ss_pred CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCc
Q 020238 160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSK 237 (329)
Q Consensus 160 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~ 237 (329)
+++|+.|++++|.+..++... +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGS-----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTT-----TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred CcccCEEECCCCccCccChhh-----hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 777888888888777665443 56677888888888877774 345667778888888888777666 44566777
Q ss_pred cceeccccccc
Q 020238 238 LAYLKLSYCER 248 (329)
Q Consensus 238 L~~L~l~~~~~ 248 (329)
|+.|++++|+.
T Consensus 281 L~~L~L~~Np~ 291 (440)
T 3zyj_A 281 LERIHLHHNPW 291 (440)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEcCCCCc
Confidence 88888877663
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.9e-25 Score=188.92 Aligned_cols=243 Identities=22% Similarity=0.260 Sum_probs=188.5
Q ss_pred CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238 2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK 81 (329)
Q Consensus 2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 81 (329)
++++++.+|..+ .++|++|++++|. +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|....
T Consensus 19 ~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 19 PQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CSSCCSSCCTTC--CTTCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred CcCCcccCCcCC--CCCceEEEeeCCc-CCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 456788887554 4699999999998 5555532 68899999999999998777778888999999999999987444
Q ss_pred CC-c-ccCCCCCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccC
Q 020238 82 TL-P-EISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG 158 (329)
Q Consensus 82 ~~-~-~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 158 (329)
.+ + .+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 44 3 466679999999999999866 56688899999999999887665556688899999999999876655455688
Q ss_pred CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCc
Q 020238 159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSK 237 (329)
Q Consensus 159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~ 237 (329)
.+++|+.|++++|.+..+.... +..+++|+.|++++|.+++++. .+..+++|+.|++++|.+........-...
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHA-----FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CccccCEEECCCCcccccCHhH-----ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 9999999999999998764433 5778999999999999999765 588899999999999988732222122234
Q ss_pred cceecccccccccccC
Q 020238 238 LAYLKLSYCERLQSLP 253 (329)
Q Consensus 238 L~~L~l~~~~~l~~~~ 253 (329)
++.+..+.+......|
T Consensus 250 l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHCCSEECCCBEEES
T ss_pred HHhcccccCccccCCc
Confidence 5555555444333343
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.9e-24 Score=199.22 Aligned_cols=250 Identities=24% Similarity=0.287 Sum_probs=196.5
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
+++++++.+|..+. ++|++|++++|. +..++. .+++|++|++++|.+. .+|. .+++|++|++++|.+.
T Consensus 47 ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 47 VGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred ecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 46778888876665 788888888886 555554 4678888998888754 4555 6688888888887654
Q ss_pred CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 160 (329)
.++. ..++|+.|++++|.+..+|.. +++|++|++++|.+. .+|. .+++|+.|++++|... .+| ..+
T Consensus 115 -~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~---~~~ 180 (622)
T 3g06_A 115 -HLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-SLP---MLP 180 (622)
T ss_dssp -CCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCC---CCC
T ss_pred -CCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-CCc---ccC
Confidence 3443 457888888988888877764 488889999887654 3443 3567888898886554 355 446
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY 240 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~ 240 (329)
++|+.|++++|.+..++.. .++|+.|++++|.++.+|. .+++|+.|++++|.++.+| ..+++|+.
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~---------~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~ 245 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKE 245 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCE
T ss_pred CCCcEEECCCCCCCCCCCc---------cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcE
Confidence 7899999999998877642 4789999999999998875 3588999999999999888 56789999
Q ss_pred ecccccccccccCCCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcc
Q 020238 241 LKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLK 293 (329)
Q Consensus 241 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~ 293 (329)
|++++| .++.+|..+++|+.|++++|. ++.+|..+..+++|+.|++++|+-
T Consensus 246 L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 246 LMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp EECCSS-CCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCC
T ss_pred EECCCC-CCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCC
Confidence 999997 467888888999999999996 568888888899999999999963
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1e-24 Score=187.49 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=113.4
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCc--ccCccccCCCcccEEeecCCCCC
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR--ILPPGIFRLEFLKELDLWGCSKL 80 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~ 80 (329)
+++++.+|..+. +++++|++++|+ +...+.. .+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 16 ~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 16 SKGLTSVPTGIP--SSATRLELESNK-LQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp SSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred CCCcccCCCCCC--CCCCEEECCCCc-cCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence 334444443332 355555555554 3333331 34455555555555554332 11333444555555555555433
Q ss_pred CCCcccCCCCCccEEEecCccccccch--hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC-CCCccc
Q 020238 81 KTLPEISSAGNIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK-SLPNEL 157 (329)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~ 157 (329)
...+.+..+++|++|++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|...+ ..|..+
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 222234444555555555555554432 34455555555555555444444445555555555555544433 244445
Q ss_pred CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCcc-CChhhhcC
Q 020238 158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFER-LPESIIHL 235 (329)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~l~~~ 235 (329)
..+++|+.|++++|.+..++... +..+++|+.|++++|.+++++. .+..+++|+.|++++|+++. .+..+..+
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTA-----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTT-----TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred hhCcCCCEEECCCCCcCCcCHHH-----hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 55555555555555555443222 3445555555555555555332 34445555555555555542 23344444
Q ss_pred C-ccceecccccc
Q 020238 236 S-KLAYLKLSYCE 247 (329)
Q Consensus 236 ~-~L~~L~l~~~~ 247 (329)
+ +|+.|++++|+
T Consensus 247 ~~~L~~L~L~~N~ 259 (306)
T 2z66_A 247 PSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTCC
T ss_pred hccCCEEEccCCC
Confidence 2 55555555544
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.2e-24 Score=196.67 Aligned_cols=240 Identities=25% Similarity=0.280 Sum_probs=122.7
Q ss_pred CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCccc-------------CcEEeccCCCCCcccCccccCCC
Q 020238 1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDK-------------LVNLNLNNCKSLRILPPGIFRLE 67 (329)
Q Consensus 1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~~~l~ 67 (329)
+++++++.+|..++.+++|++|++++|......|. .++.+.+ +++|++++|...+ +|.. .+
T Consensus 18 l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~ 91 (454)
T 1jl5_A 18 RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP--GNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PP 91 (454)
T ss_dssp ----------------CCHHHHHHHHHHHHHTSCT--TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CT
T ss_pred cccCchhhCChhHhcccchhhhhccCCcccccCCc--ccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cC
Confidence 45678888888888888888888888775445555 4555544 3666666665332 3321 24
Q ss_pred cccEEeecCCCCCCCCccc-----------------CCC-CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccC
Q 020238 68 FLKELDLWGCSKLKTLPEI-----------------SSA-GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSL 129 (329)
Q Consensus 68 ~L~~L~l~~~~~~~~~~~~-----------------~~~-~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~ 129 (329)
+|++|++++|.+.+ +|.. ... ++|++|++++|.+..+| .++.+++|++|++++|.+.. +
T Consensus 92 ~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l 168 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-L 168 (454)
T ss_dssp TCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-C
T ss_pred CCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-c
Confidence 45555555544332 2211 111 35555555555555544 35555555555555554332 3
Q ss_pred CccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh
Q 020238 130 PSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL 209 (329)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 209 (329)
|.. .++|++|++++|...+ +| .+..+++|+.|++++|.+..+|.. .++|+.|++++|.++++|. +
T Consensus 169 p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---------~~~L~~L~l~~n~l~~lp~-~ 233 (454)
T 1jl5_A 169 PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---------PLSLESIVAGNNILEELPE-L 233 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---------CTTCCEEECCSSCCSSCCC-C
T ss_pred CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---------cCcccEEECcCCcCCcccc-c
Confidence 322 2355555555544333 33 355556666666666655544321 2456666666666666653 5
Q ss_pred cCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCCCCCccEEeccCCC
Q 020238 210 GQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCT 268 (329)
Q Consensus 210 ~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~ 268 (329)
+.+++|+.|++++|+++.+|. .+++|+.|++++|. ++.+|..+++|+.|++++|.
T Consensus 234 ~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCcCCcccc---cccccCEEECCCCc-ccccCcccCcCCEEECcCCc
Confidence 666667777777666666553 23566667766654 44466556667777777665
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.2e-24 Score=188.09 Aligned_cols=274 Identities=17% Similarity=0.091 Sum_probs=214.6
Q ss_pred cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCc
Q 020238 14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNI 92 (329)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L 92 (329)
..|+.....+.+++. ++.+|. .+ .++|++|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|
T Consensus 28 ~~C~~~~~c~~~~~~-l~~iP~--~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGS-LNSIPS--GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTT-CSSCCT--TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCeEeeCCCCC-cccccc--cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 356777778887766 777776 33 3589999999998776555578899999999999987765544 46777999
Q ss_pred cEEEecCccccccchh-hhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCC-CcccCCCccCcEEecc
Q 020238 93 EVMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSL-PNELGNLEALNSLNAE 169 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 169 (329)
++|++++|.+..++.. +..+++|++|++++|.+..... ..+..+++|++|++++|...+.+ +..+..+++|+.|+++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999999988766 7899999999999987654333 36888999999999998655544 5678899999999999
Q ss_pred CccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh-cCCCCccEEEcCCCcCccCC-hh---hhcCCccceeccc
Q 020238 170 GTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLP-ES---IIHLSKLAYLKLS 244 (329)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~i~~~~-~~---l~~~~~L~~L~l~ 244 (329)
+|.+....... +..+++|++|++++|.++.++..+ ..+++|+.|++++|.++.++ .. ....+.++.++++
T Consensus 183 ~n~l~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 183 ASDLQSYEPKS-----LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp ETTCCEECTTT-----TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred CCCcCccCHHH-----HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 99988764433 577899999999999998877654 45899999999999998544 22 2345667778877
Q ss_pred ccccc----cccC---CCCCCccEEeccCCCCCcCCCCCC-CCCCCCcEEEcCCCcccchhH
Q 020238 245 YCERL----QSLP---KLPCNLSELDAHHCTALESSPGLV-FPSRDPQYFDLRNNLKLDRNE 298 (329)
Q Consensus 245 ~~~~l----~~~~---~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~i~~~~~l~~~~ 298 (329)
++..- ..+| ..+++|+.|++++|. ++.+|..+ ..+++|++|++++|+-..+..
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 76432 2233 346799999999997 55777765 678899999999998776654
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=8.1e-24 Score=191.19 Aligned_cols=252 Identities=21% Similarity=0.225 Sum_probs=144.2
Q ss_pred CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEE
Q 020238 17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 96 (329)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 96 (329)
++|++|++++|+ +...| .+..+++|++|++++|.+.+ +|..+ .+|++|++++|.+.. +|.+..+++|+.|+
T Consensus 131 ~~L~~L~L~~n~-l~~lp---~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP---ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSC-CSSCC---CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEE
T ss_pred CCCCEEECcCCC-CCCCc---ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEE
Confidence 577777877776 44454 36777777777777776443 44332 467777777765443 55666667777777
Q ss_pred ecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccccc
Q 020238 97 LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREV 176 (329)
Q Consensus 97 l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 176 (329)
+++|.+..+|... ++|++|++++|.+. .+| .+..+++|++|++++|...+ +|.. .++|+.|++++|.+..+
T Consensus 202 l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 202 ADNNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC
T ss_pred CCCCcCCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc
Confidence 7777766554432 46777777776544 444 35666677777776654432 3322 24566666666655544
Q ss_pred Chhhhhccc----------c-CCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccc
Q 020238 177 PLSIVRLNN----------F-DGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245 (329)
Q Consensus 177 ~~~~~~~~~----------~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~ 245 (329)
|.....+.. + ...++|+.|++++|.+++++. ..++|+.|++++|+++.+|.. +++|+.|++++
T Consensus 273 ~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASF 346 (454)
T ss_dssp CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCC
Confidence 421100000 0 001355555555555554331 124788888888888777643 57788888888
Q ss_pred cccccccCCCCCCccEEeccCCCCCc--CCCCCCCCC-------------CCCcEEEcCCCcc
Q 020238 246 CERLQSLPKLPCNLSELDAHHCTALE--SSPGLVFPS-------------RDPQYFDLRNNLK 293 (329)
Q Consensus 246 ~~~l~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------~~L~~L~i~~~~~ 293 (329)
|. ++.+|..+++|+.|++++|...+ .+|..+..+ ++|++|++++|.-
T Consensus 347 N~-l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 347 NH-LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp SC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred Cc-cccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 64 55677767788888888887655 566555444 6788888888753
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1e-23 Score=190.89 Aligned_cols=236 Identities=22% Similarity=0.236 Sum_probs=145.2
Q ss_pred eEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEec
Q 020238 20 KQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLN 98 (329)
Q Consensus 20 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 98 (329)
..++.++.. +...|. .+ .++++.|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|++|+++
T Consensus 57 ~~v~c~~~~-l~~iP~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTRRG-LSEVPQ--GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCSSC-CSSCCS--CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEECCCC-cCccCC--CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 455544433 555554 22 2567777777777666666667777777777777766554332 34555777777777
Q ss_pred Cccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCc-ccCCCccCcEEeccCcccccc
Q 020238 99 GTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN-ELGNLEALNSLNAEGTAIREV 176 (329)
Q Consensus 99 ~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~ 176 (329)
+|.+..++.. +..+++|++|++++|.+....+..+.++++|+.|++++|+..+.++. .|..+++|+.|++++|.+..+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7777755543 56677777777777665544444566677777777777665555543 366667777777777766655
Q ss_pred ChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccCC
Q 020238 177 PLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLPK 254 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~ 254 (329)
+. +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|. ++.++.
T Consensus 212 ~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 283 (452)
T 3zyi_A 212 PN-------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPH 283 (452)
T ss_dssp CC-------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cc-------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccCh
Confidence 42 34566677777777777664 44566677777777777766644 3455666666666666653 333331
Q ss_pred ----CCCCccEEeccCCC
Q 020238 255 ----LPCNLSELDAHHCT 268 (329)
Q Consensus 255 ----~~~~L~~L~l~~c~ 268 (329)
.+++|+.|++++|+
T Consensus 284 ~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSSTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEccCCC
Confidence 23445555555544
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=7.9e-27 Score=201.60 Aligned_cols=236 Identities=17% Similarity=0.126 Sum_probs=170.0
Q ss_pred CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238 18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 97 (329)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 97 (329)
.++..+++.+. +...+. ..+..+++|++|++++|.+....|..+..+++|++|++++|.+.... .+..+++|++|++
T Consensus 11 ~l~i~~ls~~~-l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSS-LKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTT-HHHHHH-HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEEC
T ss_pred ceeEeeccccc-hhhhHH-HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEEC
Confidence 34555555554 222222 14556789999999998877766677889999999999998765444 3777899999999
Q ss_pred cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238 98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP 177 (329)
Q Consensus 98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 177 (329)
++|.+..++. .++|++|++++|.+....+. .+++|++|++++|......+..+..+++|+.|++++|.+..++
T Consensus 88 s~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred cCCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998876653 48999999999876554332 3678999999998777666667778888999999999888654
Q ss_pred hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC---
Q 020238 178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK--- 254 (329)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--- 254 (329)
.... ...+++|++|++++|.+++++.. ..+++|+.|++++|+++.++..+..+++|+.|++++|. ++.+|.
T Consensus 161 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 234 (317)
T 3o53_A 161 FAEL----AASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR 234 (317)
T ss_dssp GGGG----GGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCC
T ss_pred HHHH----hhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhh
Confidence 3321 23578899999999988887543 34888999999999888887777788888888888764 334442
Q ss_pred CCCCccEEeccCCCC
Q 020238 255 LPCNLSELDAHHCTA 269 (329)
Q Consensus 255 ~~~~L~~L~l~~c~~ 269 (329)
.+++|+.|++++|+.
T Consensus 235 ~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 235 FSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCTTCCEEECTTCCC
T ss_pred cCCCCCEEEccCCCc
Confidence 223445555544443
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=189.91 Aligned_cols=237 Identities=20% Similarity=0.249 Sum_probs=155.1
Q ss_pred ceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEe
Q 020238 19 LKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYL 97 (329)
Q Consensus 19 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 97 (329)
.+.++.++.. +..+|. .+ .++++.|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|++|++
T Consensus 45 ~~~v~c~~~~-l~~iP~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKN-LREVPD--GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCC-CSSCCS--CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCC-cCcCCC--CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4455555443 555554 22 2567777887777666656667777778888887776544332 4555677777777
Q ss_pred cCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCc-ccCCCccCcEEeccCccccc
Q 020238 98 NGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN-ELGNLEALNSLNAEGTAIRE 175 (329)
Q Consensus 98 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~ 175 (329)
++|.+..++. .+..+++|++|++++|.+....+..+..+++|+.|++++|+....++. .|.++++|+.|++++|.+..
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 7777776654 466777777777777766554555667777777777777666555543 46677777777777777776
Q ss_pred cChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccC
Q 020238 176 VPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP 253 (329)
Q Consensus 176 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~ 253 (329)
+|. +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|. ++.++
T Consensus 200 ~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 271 (440)
T 3zyj_A 200 IPN-------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLP 271 (440)
T ss_dssp CCC-------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCC
T ss_pred ccc-------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccC
Confidence 652 45567777777777777764 455667777777777777777443 556667777777777754 33343
Q ss_pred ----CCCCCccEEeccCCC
Q 020238 254 ----KLPCNLSELDAHHCT 268 (329)
Q Consensus 254 ----~~~~~L~~L~l~~c~ 268 (329)
..+++|+.|++++|+
T Consensus 272 ~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTSSCTTCCEEECCSSC
T ss_pred hhHhccccCCCEEEcCCCC
Confidence 123566666666665
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-25 Score=203.78 Aligned_cols=235 Identities=16% Similarity=0.084 Sum_probs=188.6
Q ss_pred cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCcc
Q 020238 14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE 93 (329)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 93 (329)
..+++|++|++++|. +...+. ..+..+++|++|++++|.+....| +..+++|++|++++|.+.. ++ ..++|+
T Consensus 31 ~~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~---~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL---VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSC-CCCCCG-GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE---ECTTCC
T ss_pred ccCCCccEEEeeCCc-CCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC---CCCCcC
Confidence 455689999999987 555443 268899999999999988765544 7889999999999986542 22 238899
Q ss_pred EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccC-CCccCcEEeccCcc
Q 020238 94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG-NLEALNSLNAEGTA 172 (329)
Q Consensus 94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~ 172 (329)
.|++++|.+..++.. .+++|++|++++|.+....+..+..+++|+.|++++|...+..|..+. .+++|+.|++++|.
T Consensus 103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 999999999866543 478999999999888777777788899999999999888776676665 78899999999999
Q ss_pred ccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc-cc
Q 020238 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL-QS 251 (329)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l-~~ 251 (329)
+..++. ...+++|+.|++++|.++++|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. ..
T Consensus 181 l~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 181 IYDVKG-------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCEEEC-------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cccccc-------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 887643 2357899999999999999888888899999999999999999988888999999999998765 23
Q ss_pred cC---CCCCCccEEecc
Q 020238 252 LP---KLPCNLSELDAH 265 (329)
Q Consensus 252 ~~---~~~~~L~~L~l~ 265 (329)
+| ..++.|+.+++.
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 33 334556666665
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.7e-25 Score=191.57 Aligned_cols=241 Identities=18% Similarity=0.134 Sum_probs=133.8
Q ss_pred cCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC-CCCcccC--------CCCCccEEEecCcccc-ccchhh
Q 020238 40 LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL-KTLPEIS--------SAGNIEVMYLNGTAIE-ELPSSI 109 (329)
Q Consensus 40 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~--------~~~~L~~L~l~~~~i~-~~~~~~ 109 (329)
...++|++|++++|.+ .+|..+... |++|++++|.+. ..++... .+++|++|++++|.+. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666555 444433332 555566555442 1222211 3456666666666665 444443
Q ss_pred --hcCCCCCEEEcCCCCCcccCCccccCC-----CCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccccc---Chh
Q 020238 110 --ECLSGLSALYLDHCKRLKSLPSSLCKL-----KSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREV---PLS 179 (329)
Q Consensus 110 --~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---~~~ 179 (329)
..+++|++|++++|.+... |..+..+ ++|++|++++|...+..+..+..+++|+.|++++|.+... +..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5566666666666654443 4444443 6666666666655555445666666666666666654321 111
Q ss_pred hhhccccCCCCCccEEEcCCCCCCCcc---h-hhcCCCCccEEEcCCCcCccCC--hhhhcCCccceecccccccccccC
Q 020238 180 IVRLNNFDGLQNLTSLYLTDCGITELP---E-NLGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCERLQSLP 253 (329)
Q Consensus 180 ~~~~~~~~~~~~L~~L~l~~~~l~~~~---~-~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~l~~~~ 253 (329)
+ .+..+++|++|++++|.+++++ . .+..+++|+.|++++|+++..+ ..+..+++|++|++++|. ++.+|
T Consensus 195 ~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip 269 (312)
T 1wwl_A 195 L----CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP 269 (312)
T ss_dssp S----CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCC
T ss_pred H----HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhh
Confidence 1 0245666777777777666432 1 2345666777777777666432 334445667777777654 33555
Q ss_pred CCC-CCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238 254 KLP-CNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292 (329)
Q Consensus 254 ~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~ 292 (329)
..+ ++|+.|++++|. ++.+|. +..+++|++|++++++
T Consensus 270 ~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 270 KGLPAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCCSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhccCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 332 467777777765 344444 5566677777777764
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.7e-25 Score=192.85 Aligned_cols=246 Identities=18% Similarity=0.194 Sum_probs=192.9
Q ss_pred cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCc-ccCcccc-------CCCcccEEeecCCCCCCCCcc
Q 020238 14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR-ILPPGIF-------RLEFLKELDLWGCSKLKTLPE 85 (329)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~ 85 (329)
...++|++|++++|.. ..|. .+.. .|++|++++|.+.. .++..+. ++++|++|++++|.+.+..|.
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~--~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLG--QFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCH--HHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred ccCCCceeEeeccccc--ccHH--HHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 4556788888888874 4443 3333 38999999987633 4555544 689999999999988766664
Q ss_pred -c--CCCCCccEEEecCccccccchhhhcC-----CCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCC--CCc
Q 020238 86 -I--SSAGNIEVMYLNGTAIEELPSSIECL-----SGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKS--LPN 155 (329)
Q Consensus 86 -~--~~~~~L~~L~l~~~~i~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~ 155 (329)
+ ..+++|++|++++|.+...|..+..+ ++|++|++++|.+....+..+..+++|++|++++|...+. .+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 3 56799999999999999778777776 9999999999998776778899999999999999886654 233
Q ss_pred cc--CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCccCChh
Q 020238 156 EL--GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFERLPES 231 (329)
Q Consensus 156 ~~--~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~ 231 (329)
.+ ..+++|+.|++++|.+..++.....+ +..+++|+.|++++|.+++.+ ..+..+++|+.|++++|+++.+|..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSAL--AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHH--HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHH--HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh
Confidence 33 78899999999999998543322111 456789999999999999854 3456689999999999999999876
Q ss_pred hhcCCccceecccccccccccC--CCCCCccEEeccCCCCC
Q 020238 232 IIHLSKLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTAL 270 (329)
Q Consensus 232 l~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l 270 (329)
+. ++|++|++++|. ++.+| ..+++|++|++++|+..
T Consensus 272 ~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCCCCC
Confidence 66 899999999975 45556 34578999999999853
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.8e-22 Score=188.91 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=95.6
Q ss_pred CCCCchhhhh-hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238 1 MPHGNIQQLW-DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 1 l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
|++|+|+.++ ..|..+++|++|++++|+ +..++.. ++.++++|++|+|++|.+...-+..|.++++|++|++++|.+
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 6788999986 468899999999999987 6666543 688899999999999886654455678899999999999876
Q ss_pred CCCCc-ccCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCC
Q 020238 80 LKTLP-EISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCK 124 (329)
Q Consensus 80 ~~~~~-~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~ 124 (329)
....+ .+..+++|++|++++|.+. ..|..++.+++|++|++++|.
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 54433 3666788999999888887 346677778888888887764
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.8e-22 Score=171.85 Aligned_cols=204 Identities=19% Similarity=0.204 Sum_probs=171.8
Q ss_pred hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCC
Q 020238 12 SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGN 91 (329)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 91 (329)
.+..++++++++++++. +..+|. .+ .++++.|++++|.+....+..+..+++|++|++++|.+. .++....+++
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~--~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPP--DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCS--CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTT
T ss_pred cccccCCccEEECCCCC-CCcCCC--CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCc
Confidence 46778899999999876 777765 33 368999999999987777788899999999999998754 4454566799
Q ss_pred ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238 92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT 171 (329)
Q Consensus 92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (329)
|+.|++++|.+..+|..+..+++|++|++++|.+....+..+.++++|++|++++|......+..|..+++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999999988888889999999999998876666677888999999999998777655566788899999999999
Q ss_pred cccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238 172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~ 226 (329)
.+..++... +..+++|+.|++++|.++.+|..+...+.|+.+++++|.+.
T Consensus 159 ~l~~l~~~~-----~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGL-----LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHH-----hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 999888765 67788999999999999999888888889999999998775
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.5e-25 Score=203.50 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=143.1
Q ss_pred hhhhhccCCCCceEEEecCCCCcccCCCcccccCcc----cCcEEeccCCCCCc----ccCccccCCCcccEEeecCCCC
Q 020238 8 QLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLD----KLVNLNLNNCKSLR----ILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 8 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
.++..+..+++|++|++++|. +.+.........++ +|++|++++|.+.. .++..+..+++|++|++++|.+
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 344555566666666666665 22211101122233 56677777666542 3455566666777777776654
Q ss_pred CCCCc-----c-cCCCCCccEEEecCccccc-----cchhhhcCCCCCEEEcCCCCCcccCCcccc-----CCCCCcEEe
Q 020238 80 LKTLP-----E-ISSAGNIEVMYLNGTAIEE-----LPSSIECLSGLSALYLDHCKRLKSLPSSLC-----KLKSLNSIY 143 (329)
Q Consensus 80 ~~~~~-----~-~~~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~ 143 (329)
....+ . ....++|++|++++|.+.. ++..+..+++|++|++++|.+....+..+. ..++|++|+
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 32111 0 1112456666666666552 234455566666666666654332221111 244566666
Q ss_pred ccCCCCCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhhcCCC-
Q 020238 144 LRWCSSLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENLGQLS- 213 (329)
Q Consensus 144 l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~- 213 (329)
+++|..... ++..+..+++|+.|++++|.+............+..+++|++|++++|.+++ ++..+..++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence 666544432 2333444555666666655544221000000001224444444444444443 233333344
Q ss_pred ----------------------------CccEEEcCCCcCcc-----CChhhhcCCccceecccccccccccC-------
Q 020238 214 ----------------------------LLLELYLEKNNFER-----LPESIIHLSKLAYLKLSYCERLQSLP------- 253 (329)
Q Consensus 214 ----------------------------~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~~l~~~~------- 253 (329)
+|+.|++++|.++. ++..+..+++|++|++++|..-...+
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 44444444444431 23344455666666666653221101
Q ss_pred -CCCCCccEEeccCCCCCc----CCCCCCCCCCCCcEEEcCCCcccchhHHHHHhh
Q 020238 254 -KLPCNLSELDAHHCTALE----SSPGLVFPSRDPQYFDLRNNLKLDRNEIREILE 304 (329)
Q Consensus 254 -~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~ 304 (329)
...++|++|++++|.... .++..+..+++|++|++++| .+++.+...+..
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~ 420 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVE 420 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHH
Confidence 113567777777765332 34444445666777777776 455555555443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-24 Score=197.34 Aligned_cols=236 Identities=16% Similarity=0.096 Sum_probs=189.0
Q ss_pred ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238 39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL 118 (329)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L 118 (329)
...+++|++|++++|.+....|..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+..++. .++|++|
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 3456699999999998877777889999999999999988765444 7788999999999999987664 3899999
Q ss_pred EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238 119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198 (329)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 198 (329)
++++|.+....+. .+++|+.|++++|...+..|..+..+++|+.|++++|.+...+.... ...+++|+.|+++
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECT
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----hhhCCcccEEecC
Confidence 9999887654433 46889999999998888777788899999999999999986543221 2357999999999
Q ss_pred CCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCC-cCCC
Q 020238 199 DCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTAL-ESSP 274 (329)
Q Consensus 199 ~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l-~~~~ 274 (329)
+|.+++++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|. ++.+|. .+++|+.|++++|+.. ..++
T Consensus 178 ~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 178 YNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp TSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 999998865 446999999999999999998889999999999999976 445664 3478999999999865 3344
Q ss_pred CCCCCCCCCcEEEc
Q 020238 275 GLVFPSRDPQYFDL 288 (329)
Q Consensus 275 ~~~~~~~~L~~L~i 288 (329)
..+..++.++.+++
T Consensus 256 ~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 256 DFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHHhCCCCcEEec
Confidence 44444444444444
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=6.1e-22 Score=167.57 Aligned_cols=204 Identities=20% Similarity=0.180 Sum_probs=128.0
Q ss_pred ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEc
Q 020238 43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYL 120 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l 120 (329)
++|++|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 356777777666555444456666677777777665443332 3445566777777766666444 45666777777777
Q ss_pred CCCCCcccCCccccCCCCCcEEeccCCCCCC-CCCcccCCCccCcEEeccCccccccChhh-hhccccCCCCCcc-EEEc
Q 020238 121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK-SLPNELGNLEALNSLNAEGTAIREVPLSI-VRLNNFDGLQNLT-SLYL 197 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~~~L~-~L~l 197 (329)
.+|.+....+..+..+++|++|++++|.... .+|..+..+++|+.|++++|.+..++... .. +..++.+. .|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV---LHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH---HHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh---hhhccccceeeec
Confidence 7766555444456667777777777766554 24666777777777777777776654322 11 12233333 6777
Q ss_pred CCCCCCCcchhhcCCCCccEEEcCCCcCccCCh-hhhcCCccceecccccccc
Q 020238 198 TDCGITELPENLGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 198 ~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~l 249 (329)
++|.+++++.......+|+.|++++|+++.++. .+..+++|+.|++++|+..
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 777777766655555677777777777776663 3466777777777776543
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.6e-22 Score=168.30 Aligned_cols=214 Identities=18% Similarity=0.198 Sum_probs=175.2
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT 82 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 82 (329)
+.+++.+|..+. ++|++|++++|. +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCC-CCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCccccCCCCC--CCccEEECCCCc-ccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 456677776553 579999999998 5555432 688899999999999987776666788999999999999887655
Q ss_pred Cc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCCCcccCC
Q 020238 83 LP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN 159 (329)
Q Consensus 83 ~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 159 (329)
.+ .+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. .+|..+..+++|++|++++|......+..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 43 46777999999999999987655 58899999999999988766 36888999999999999998777655566666
Q ss_pred CccCc----EEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238 160 LEALN----SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 160 l~~L~----~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~ 226 (329)
+.+++ .+++++|.+..++... +. ..+|+.|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~-----~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGA-----FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTS-----SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhccccceeeecCCCcccccCccc-----cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66666 8999999999877654 22 34899999999999998765 578999999999999887
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.2e-24 Score=197.57 Aligned_cols=299 Identities=16% Similarity=0.137 Sum_probs=203.1
Q ss_pred CCCchhhhh--hhccCCCCceEEEecCCCCcccC---CCcccccCcccCcEEeccCCCCCcccCccc-cCCC----cccE
Q 020238 2 PHGNIQQLW--DSVQHNGKLKQIISRASNFFTKS---PNHSLTLHLDKLVNLNLNNCKSLRILPPGI-FRLE----FLKE 71 (329)
Q Consensus 2 ~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~ 71 (329)
++++++... ..+..+++|++|++++|. +... .....+..+++|++|++++|.+....+..+ ..++ +|++
T Consensus 11 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 89 (461)
T 1z7x_W 11 QCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89 (461)
T ss_dssp ESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred hhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE
Confidence 456665542 237789999999999998 4322 111257778999999999988655333222 2344 7999
Q ss_pred EeecCCCCCCC----Cc-ccCCCCCccEEEecCcccccc-chhh-----hcCCCCCEEEcCCCCCccc----CCccccCC
Q 020238 72 LDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIEEL-PSSI-----ECLSGLSALYLDHCKRLKS----LPSSLCKL 136 (329)
Q Consensus 72 L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~i~~~-~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~~l 136 (329)
|++++|.+... ++ .+..+++|+.|++++|.+... +..+ ...++|++|++++|.+... ++..+..+
T Consensus 90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC
Confidence 99999876632 23 456679999999999988732 2222 2356899999999887653 34556678
Q ss_pred CCCcEEeccCCCCCCCCCcccC-----CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc------
Q 020238 137 KSLNSIYLRWCSSLKSLPNELG-----NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL------ 205 (329)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------ 205 (329)
++|++|++++|......+..+. ..++|+.|++++|.+...+.... ...+..+++|++|++++|.+++.
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-HHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH-HHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 9999999999875443222222 35689999999998875321100 00135689999999999988762
Q ss_pred chhhcCCCCccEEEcCCCcCcc-----CChhhhcCCccceecccccccccc----c----CCCCCCccEEeccCCCCCcC
Q 020238 206 PENLGQLSLLLELYLEKNNFER-----LPESIIHLSKLAYLKLSYCERLQS----L----PKLPCNLSELDAHHCTALES 272 (329)
Q Consensus 206 ~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~~l~~----~----~~~~~~L~~L~l~~c~~l~~ 272 (329)
+.....+++|+.|++++|.++. ++..+..+++|++|++++|..-.. + ....++|++|++++|.....
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 2223468999999999999985 677888899999999999864211 1 12335888888888874332
Q ss_pred ----CCCCCCCCCCCcEEEcCCCcccchhHHHHHh
Q 020238 273 ----SPGLVFPSRDPQYFDLRNNLKLDRNEIREIL 303 (329)
Q Consensus 273 ----~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~ 303 (329)
++..+..++.|++|++++| .+++.....+.
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~ 362 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC 362 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH
Confidence 2333344567888888877 56665554443
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.3e-21 Score=165.05 Aligned_cols=202 Identities=20% Similarity=0.231 Sum_probs=172.7
Q ss_pred cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccchhhhcCCCCC
Q 020238 38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLS 116 (329)
Q Consensus 38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~ 116 (329)
.+..++++++++++++.+ ..+|..+. +++++|++++|.+....+ .+..+++|+.|++++|.+..++.. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 467788999999999764 45676554 689999999988765444 567779999999999999977664 7899999
Q ss_pred EEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEE
Q 020238 117 ALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLY 196 (329)
Q Consensus 117 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 196 (329)
+|++++|.+ ..+|..+..+++|++|++++|......+..|..+++|+.|++++|.+..++... +..+++|+.|+
T Consensus 81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~ 154 (290)
T 1p9a_G 81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL-----LTPTPKLEKLS 154 (290)
T ss_dssp EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh-----cccccCCCEEE
Confidence 999999875 467777888999999999998777666677999999999999999999888765 67789999999
Q ss_pred cCCCCCCCcchh-hcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc
Q 020238 197 LTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 197 l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l 249 (329)
+++|.++++|.. +..+++|+.|++++|+++.+|..+...++|+.+++++|+..
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 999999998765 46799999999999999999998899999999999988754
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.4e-20 Score=175.35 Aligned_cols=234 Identities=25% Similarity=0.250 Sum_probs=191.5
Q ss_pred CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238 18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 97 (329)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 97 (329)
+++.|+++++. ++.+|. .+. ++|++|++++|.+. .+|. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~-L~~lp~--~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPD--CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSC-CSCCCS--CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEE
T ss_pred CCcEEEecCCC-cCccCh--hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEEC
Confidence 59999999987 777776 333 89999999998755 5665 5789999999998754 5555 5699999999
Q ss_pred cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238 98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP 177 (329)
Q Consensus 98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 177 (329)
++|.+..+|. .+++|+.|++++|.+. .+|.. +++|++|++++|... .+|. ...+|+.|++++|.+..+|
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCCCc
Confidence 9999998877 5789999999998754 45543 589999999997655 4454 3468999999999999877
Q ss_pred hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCCCC
Q 020238 178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC 257 (329)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~ 257 (329)
..+++|+.|++++|.++++|. .+++|+.|++++|.++.+|. .+++|+.|++++| .++.+|..++
T Consensus 178 ---------~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp~~l~ 241 (622)
T 3g06_A 178 ---------MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLPVLPS 241 (622)
T ss_dssp ---------CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCCCCCT
T ss_pred ---------ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCCCCCC
Confidence 226899999999999999875 35899999999999998885 3588999999997 4677888889
Q ss_pred CccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccc
Q 020238 258 NLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLD 295 (329)
Q Consensus 258 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~ 295 (329)
+|+.|++++|. ++.+|. .+++|++|++++| +++
T Consensus 242 ~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 242 ELKELMVSGNR-LTSLPM---LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCC
T ss_pred cCcEEECCCCC-CCcCCc---ccccCcEEeCCCC-CCC
Confidence 99999999996 667776 5567999999998 344
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.4e-22 Score=168.74 Aligned_cols=204 Identities=19% Similarity=0.260 Sum_probs=111.1
Q ss_pred cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchh-hhcCCCCC
Q 020238 38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IECLSGLS 116 (329)
Q Consensus 38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~ 116 (329)
....+++|+.|++++|.+.. + ..+..+++|++|++++|.+. .++.+..+++|++|++++|.+..++.. +..+++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34556667777776655332 2 23556666777777666543 344555556666666666666544432 45566666
Q ss_pred EEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEE
Q 020238 117 ALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLY 196 (329)
Q Consensus 117 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 196 (329)
+|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++... +..+++|+.|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-----FDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH-----hcCCccCCEEE
Confidence 6666665554444444555666666666665444333334455566666666666555544433 34455566666
Q ss_pred cCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCC
Q 020238 197 LTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKL 255 (329)
Q Consensus 197 l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 255 (329)
+++|.+++++. .+..+++|+.|++++|.+. +.++.|+.+++++|...+.+|..
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc
Confidence 66665555433 2445556666666655443 22344555555555444445443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=9.4e-21 Score=159.70 Aligned_cols=200 Identities=21% Similarity=0.272 Sum_probs=123.0
Q ss_pred CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEE
Q 020238 17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVM 95 (329)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L 95 (329)
.+.+.++++++. ++.+|. .+ .+++++|++++|.+....+..+..+++|++|++++|.+....+. +..+++|++|
T Consensus 16 ~~~~~l~~~~~~-l~~ip~--~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPS--NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSC-CSSCCS--CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCC-CCccCC--CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 356777777765 555554 22 25678888888776554445677777888888877665433332 3445677777
Q ss_pred EecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238 96 YLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR 174 (329)
Q Consensus 96 ~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 174 (329)
++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 777777665543 3456667777777776655544455566666777777665544433334566666666666666666
Q ss_pred ccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238 175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~ 226 (329)
.++... +..+++|++|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus 171 ~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 171 RVPEGA-----FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EeChhH-----hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 555433 44556666666666666665442 455666666666666554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.6e-20 Score=158.29 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=167.3
Q ss_pred ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccchh-hhcCCCCCEEEc
Q 020238 43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSGLSALYL 120 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l 120 (329)
.+.+.++++++.+. .+|..+. +++++|++++|.+....+ .+..+++|++|++++|.+..++.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35789999997644 5676543 689999999987665444 567789999999999999988765 478999999999
Q ss_pred CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238 121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC 200 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (329)
++|.+....+..+..+++|++|++++|......+..|..+++|+.|++++|.+..++... +..+++|+.|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV-----FDKLTSLKELRLYNN 167 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSS
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH-----ccCCcccceeEecCC
Confidence 998876655566788999999999998877766677899999999999999999887665 677899999999999
Q ss_pred CCCCcch-hhcCCCCccEEEcCCCcCccCCh-hhhcCCccceecccccccc
Q 020238 201 GITELPE-NLGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 201 ~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~l 249 (329)
.+++++. .+..+++|+.|++++|+++.++. .+..+++|+.|++++|+..
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 9999765 47789999999999999998874 5788999999999998754
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=6.8e-21 Score=160.72 Aligned_cols=228 Identities=19% Similarity=0.199 Sum_probs=181.2
Q ss_pred CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEc
Q 020238 41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYL 120 (329)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 120 (329)
.+..+..+++.++...... ....+++|+.|+++++.+ ..++.+..+++|+.|++++|.+..++ .+..+++|++|++
T Consensus 17 ~~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i-~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 92 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEEC
T ss_pred hHHHHHHHHhcCccccccc--ccccccceeeeeeCCCCc-ccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEEC
Confidence 3455666777776544432 245688999999998764 45667778899999999999988764 6788999999999
Q ss_pred CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238 121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC 200 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (329)
++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++... +..+++|+.|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-----FDKLTNLTELDLSYN 167 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSS
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH-----hccCccCCEEECCCC
Confidence 998876656666788999999999998877666666888999999999999998877655 577899999999999
Q ss_pred CCCCcchh-hcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccCCCCCCccEEeccCCCCCcCCCCCCC
Q 020238 201 GITELPEN-LGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVF 278 (329)
Q Consensus 201 ~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 278 (329)
.+++++.. +..+++|+.|++++|+++.++ ..+..+++|+.|++++|+.... +++|+.++++.|...+.+|..++
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccCccc
Confidence 99987654 578999999999999998766 4578899999999999875543 45788898888887777777666
Q ss_pred CCC
Q 020238 279 PSR 281 (329)
Q Consensus 279 ~~~ 281 (329)
...
T Consensus 244 ~~~ 246 (272)
T 3rfs_A 244 SVA 246 (272)
T ss_dssp CBC
T ss_pred ccC
Confidence 543
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3e-21 Score=165.82 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=85.8
Q ss_pred CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEc
Q 020238 41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYL 120 (329)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 120 (329)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. ++.+..+++|+.|++++|.+..++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 34444444444443222 22 23444444444444443322 222344444444444444444432 3444455555555
Q ss_pred CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238 121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC 200 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (329)
++|.+.. ++ .+..+++|+.|++++|..... +. +..+++|+.|++++|.+..++. +..+++|+.|++++|
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-------LANLSKLTTLKADDN 183 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSS
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-------hcCCCCCCEEECCCC
Confidence 5544322 22 144445555555554433322 11 4444555555555555444332 233455555555555
Q ss_pred CCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238 201 GITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 201 ~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
.+++++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|+
T Consensus 184 ~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 184 KISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred ccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 5555443 444555555555555555444 24455555555555544
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=5.9e-21 Score=158.03 Aligned_cols=58 Identities=28% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCCcc-EEEcCCCCCCCcchhhcCCCCccEEEcCCCc-CccCC-hhhhcC-Cccceecccc
Q 020238 188 GLQNLT-SLYLTDCGITELPENLGQLSLLLELYLEKNN-FERLP-ESIIHL-SKLAYLKLSY 245 (329)
Q Consensus 188 ~~~~L~-~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-i~~~~-~~l~~~-~~L~~L~l~~ 245 (329)
.+++|+ .|++++|.++.+|......++|+.|++++|+ ++.++ ..+..+ ++|+.|++++
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred chhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 344444 4444444444443332222444444444442 44332 223333 4444444444
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6.8e-21 Score=157.63 Aligned_cols=195 Identities=17% Similarity=0.160 Sum_probs=149.4
Q ss_pred ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc--ccCCCCCccEEEecC-ccccccc-hhhhcCCCCCEE
Q 020238 43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNG-TAIEELP-SSIECLSGLSAL 118 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~L 118 (329)
++|++|++++|.+....+..+.++++|++|++++|..+..++ .+..+++|+.|++++ |.+..++ ..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378888888877665555567778888888888876333333 456668888888887 8888665 457788899999
Q ss_pred EcCCCCCcccCCccccCCCCCc---EEeccCCCCCCCCC-cccCCCccCc-EEeccCccccccChhhhhccccCCCCCcc
Q 020238 119 YLDHCKRLKSLPSSLCKLKSLN---SIYLRWCSSLKSLP-NELGNLEALN-SLNAEGTAIREVPLSIVRLNNFDGLQNLT 193 (329)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~L~ 193 (329)
++++|.+.. +|. +..+++|+ +|++++|...+.++ ..|..+++|+ .|++++|.+..++... +.. ++|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~-----~~~-~~L~ 182 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-----FNG-TKLD 182 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT-----TTT-CEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh-----cCC-CCCC
Confidence 999877544 555 67777777 99999983444444 4588899999 9999999988887655 344 7899
Q ss_pred EEEcCCCC-CCCcch-hhcCC-CCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238 194 SLYLTDCG-ITELPE-NLGQL-SLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 194 ~L~l~~~~-l~~~~~-~~~~~-~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
.|++++|. +++++. .+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++.
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 99999994 988754 56778 9999999999999988864 67889999998765
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.6e-20 Score=161.19 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=164.2
Q ss_pred cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCcc
Q 020238 14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE 93 (329)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 93 (329)
..+++|++|++++|. +...+ .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+. .++.+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~---~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIE---GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVSAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCC-ccCch---hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-CchhhcCCCCCC
Confidence 457899999999987 55554 47789999999999987655 344 788999999999998754 567788889999
Q ss_pred EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238 94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI 173 (329)
Q Consensus 94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 173 (329)
.|++++|.+..++. +..+++|++|++++|.+.. ++. +..+++|+.|++++|.... ++. +..+++|+.|++++|.+
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 99999999988765 8899999999999987654 333 7789999999999976654 433 88899999999999999
Q ss_pred cccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCCh
Q 020238 174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPE 230 (329)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 230 (329)
..++. +..+++|++|++++|.+++++. +..+++|+.|++++|.++..|.
T Consensus 186 ~~~~~-------l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 186 SDISP-------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCGG-------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CcChh-------hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 87764 3568999999999999999874 7889999999999999887664
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=162.71 Aligned_cols=221 Identities=17% Similarity=0.120 Sum_probs=120.3
Q ss_pred cCcEEeccCCCCCcc-cCc--cccCCCcccEEeecCCCCCCCCccc---CCCCCccEEEecCcccccc-c----hhhhcC
Q 020238 44 KLVNLNLNNCKSLRI-LPP--GIFRLEFLKELDLWGCSKLKTLPEI---SSAGNIEVMYLNGTAIEEL-P----SSIECL 112 (329)
Q Consensus 44 ~L~~L~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~-~----~~~~~l 112 (329)
.++.+.+.++..... +.. .+..+++|++|++++|.+.+..+.. ...++|++|++++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666554321 111 1122455777777777666555432 4456777777777766631 1 223456
Q ss_pred CCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCC--C--CcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238 113 SGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKS--L--PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG 188 (329)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 188 (329)
++|++|++++|.+....+..+..+++|++|++++|...+. + +..+..+++|+.|++++|.++.++.....+ ++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l--~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL--AAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH--HHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH--Hhc
Confidence 6777777777666555555666677777777776654431 1 122345566666666666665443321100 234
Q ss_pred CCCccEEEcCCCCCCCc-chhhcCC---CCccEEEcCCCcCccCChhhhcCCccceeccccccccc-ccCCCCCCccEEe
Q 020238 189 LQNLTSLYLTDCGITEL-PENLGQL---SLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQ-SLPKLPCNLSELD 263 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~~-~~~~~~~---~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~ 263 (329)
+++|++|++++|.+++. |..+..+ ++|+.|++++|+++.+|..+. ++|+.|++++|...+ ..+..+++|+.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 56666666666666664 4444444 566666666666666665442 566666666654322 1123344555555
Q ss_pred ccCCC
Q 020238 264 AHHCT 268 (329)
Q Consensus 264 l~~c~ 268 (329)
+++|+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 55554
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.9e-22 Score=178.90 Aligned_cols=240 Identities=15% Similarity=0.200 Sum_probs=145.0
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCcccCCC--cccccCcccCcEEeccCCCCC---cccCccc-------cCCCccc
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPN--HSLTLHLDKLVNLNLNNCKSL---RILPPGI-------FRLEFLK 70 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~ 70 (329)
+..+..++..+..+++|++|++++|......+. ...+..+++|++|++++|... ..+|..+ ..+++|+
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 345556666777778888888888763222111 013566788888888876322 2333333 5677888
Q ss_pred EEeecCCCCCCC----Cc-ccCCCCCccEEEecCccccc-----cchhhhcC---------CCCCEEEcCCCCCcc-cCC
Q 020238 71 ELDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIEE-----LPSSIECL---------SGLSALYLDHCKRLK-SLP 130 (329)
Q Consensus 71 ~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~i~~-----~~~~~~~l---------~~L~~L~l~~~~~~~-~~~ 130 (329)
+|++++|.+... ++ .+..+++|+.|++++|.+.. ++..+..+ ++|++|++++|.+.. .++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 888888766542 22 34455777777777777652 22233334 777777777776542 222
Q ss_pred ---ccccCCCCCcEEeccCCCCCC-----CCCcccCCCccCcEEeccCcccc-----ccChhhhhccccCCCCCccEEEc
Q 020238 131 ---SSLCKLKSLNSIYLRWCSSLK-----SLPNELGNLEALNSLNAEGTAIR-----EVPLSIVRLNNFDGLQNLTSLYL 197 (329)
Q Consensus 131 ---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~~~~~~~~~~~~L~~L~l 197 (329)
..+..+++|++|++++|.... ..+..+..+++|+.|++++|.+. .++.. +..+++|+.|++
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~------l~~~~~L~~L~L 251 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA------LKSWPNLRELGL 251 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH------GGGCTTCCEEEC
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH------HccCCCcCEEEC
Confidence 345566777777777765442 12225566677777777777663 22222 345667777777
Q ss_pred CCCCCCC-----cchhhc--CCCCccEEEcCCCcCcc-----CChhh-hcCCccceeccccccc
Q 020238 198 TDCGITE-----LPENLG--QLSLLLELYLEKNNFER-----LPESI-IHLSKLAYLKLSYCER 248 (329)
Q Consensus 198 ~~~~l~~-----~~~~~~--~~~~L~~L~l~~~~i~~-----~~~~l-~~~~~L~~L~l~~~~~ 248 (329)
++|.+++ ++..+. .+++|+.|++++|.++. ++..+ .++++|+.|++++|+.
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 7777765 244442 36777777777777764 66555 4467777777777654
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=163.68 Aligned_cols=225 Identities=19% Similarity=0.164 Sum_probs=170.3
Q ss_pred CCCceEEEecCCCCcccCC--CcccccCcccCcEEeccCCCCCcccCccc--cCCCcccEEeecCCCCCCCCc-----cc
Q 020238 16 NGKLKQIISRASNFFTKSP--NHSLTLHLDKLVNLNLNNCKSLRILPPGI--FRLEFLKELDLWGCSKLKTLP-----EI 86 (329)
Q Consensus 16 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~-----~~ 86 (329)
...++.+.+.++.. .... .......+++|++|++++|.+.+..|..+ ..+++|++|++++|.+....+ .+
T Consensus 63 ~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34678888888762 2111 10123345679999999998888888777 789999999999988776544 23
Q ss_pred CCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCccc--C--CccccCCCCCcEEeccCCCCCCCCCc----cc
Q 020238 87 SSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKS--L--PSSLCKLKSLNSIYLRWCSSLKSLPN----EL 157 (329)
Q Consensus 87 ~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~ 157 (329)
..+++|++|++++|.+..++ ..+..+++|++|++++|.+... + +..+..+++|++|++++|... .++. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence 44689999999999998655 5678899999999999886542 2 223467889999999997664 3332 24
Q ss_pred CCCccCcEEeccCcccccc-ChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCC
Q 020238 158 GNLEALNSLNAEGTAIREV-PLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLS 236 (329)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~ 236 (329)
..+++|+.|++++|.+... |..+.. +..+++|++|++++|.++++|..+. ++|+.|++++|+++.+|. +..++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~---~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~ 294 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPR---CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELP 294 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSS---CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHh---ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCC
Confidence 6778999999999999876 544322 2334799999999999999887664 899999999999998765 67889
Q ss_pred ccceeccccccc
Q 020238 237 KLAYLKLSYCER 248 (329)
Q Consensus 237 ~L~~L~l~~~~~ 248 (329)
+|+.|++++|+.
T Consensus 295 ~L~~L~L~~N~l 306 (310)
T 4glp_A 295 EVDNLTLDGNPF 306 (310)
T ss_dssp CCSCEECSSTTT
T ss_pred CccEEECcCCCC
Confidence 999999999864
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=7.2e-22 Score=173.65 Aligned_cols=243 Identities=13% Similarity=0.045 Sum_probs=162.3
Q ss_pred CCCCchhhhh-hhccCCCCceEEEecCCCCcccCCCc---ccccCcc-cCcEEeccCCCCCcccCccccCC-----Cccc
Q 020238 1 MPHGNIQQLW-DSVQHNGKLKQIISRASNFFTKSPNH---SLTLHLD-KLVNLNLNNCKSLRILPPGIFRL-----EFLK 70 (329)
Q Consensus 1 l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~ 70 (329)
|++++++... ..+...++|++|++++|. +...+.. ..+..++ +|++|++++|.+....+..+..+ ++|+
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 5677888654 444455569999999998 5555421 2567788 89999999998766555555543 8899
Q ss_pred EEeecCCCCCCCCcc-----cCCC-CCccEEEecCccccccch-----hhhc-CCCCCEEEcCCCCCccc----CCcccc
Q 020238 71 ELDLWGCSKLKTLPE-----ISSA-GNIEVMYLNGTAIEELPS-----SIEC-LSGLSALYLDHCKRLKS----LPSSLC 134 (329)
Q Consensus 71 ~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~i~~~~~-----~~~~-l~~L~~L~l~~~~~~~~----~~~~~~ 134 (329)
+|++++|.+....+. +... ++|+.|++++|.++..+. .+.. .++|++|++++|.+... ++..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 999999886655442 4444 788999999888874432 2333 35888999988876543 233445
Q ss_pred CCC-CCcEEeccCCCCCCCCCc----ccCCC-ccCcEEeccCcccccc-----ChhhhhccccCCCCCccEEEcCCCCCC
Q 020238 135 KLK-SLNSIYLRWCSSLKSLPN----ELGNL-EALNSLNAEGTAIREV-----PLSIVRLNNFDGLQNLTSLYLTDCGIT 203 (329)
Q Consensus 135 ~l~-~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~l~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~l~ 203 (329)
..+ +|++|++++|......+. .+... ++|+.|++++|.+... +..+. ...++|++|++++|.++
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-----~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-----SIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-----HSCTTCCEEECCSSCCC
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-----cCCCCceEEECcCCCCC
Confidence 555 888888888766554433 23344 4788888888887762 22221 12457888888888887
Q ss_pred Ccc-----hhhcCCCCccEEEcCCCcCccC--------ChhhhcCCccceecccccccc
Q 020238 204 ELP-----ENLGQLSLLLELYLEKNNFERL--------PESIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 204 ~~~-----~~~~~~~~L~~L~l~~~~i~~~--------~~~l~~~~~L~~L~l~~~~~l 249 (329)
+.+ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|+.-
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 632 3345678888888888874422 234556777888888877643
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.8e-21 Score=169.32 Aligned_cols=245 Identities=17% Similarity=0.208 Sum_probs=141.2
Q ss_pred CceEEEecCCCCcccCCCcccccCc--ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC-Cc-ccCCCCCcc
Q 020238 18 KLKQIISRASNFFTKSPNHSLTLHL--DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT-LP-EISSAGNIE 93 (329)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~ 93 (329)
.++.++++++. +. +. .+..+ ++++.|++++|.+....+. +..+++|++|++++|.+... ++ .+..+++|+
T Consensus 48 ~~~~l~l~~~~-~~--~~--~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKN-LH--PD--VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCB-CC--HH--HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeecccccc-CC--HH--HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 36677777665 22 11 34444 6777777777665444333 45677777777777664432 33 234457777
Q ss_pred EEEecCcccc-ccchhhhcCCCCCEEEcCCCC-Ccc-cCCccccCCCCCcEEeccCC-CCCCC-CCcccCCCc-cCcEEe
Q 020238 94 VMYLNGTAIE-ELPSSIECLSGLSALYLDHCK-RLK-SLPSSLCKLKSLNSIYLRWC-SSLKS-LPNELGNLE-ALNSLN 167 (329)
Q Consensus 94 ~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~ 167 (329)
+|++++|.+. ..+..++.+++|++|++++|. +.. .++..+..+++|++|++++| ..... ++..+..++ +|+.|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 7777777666 445566667777777777763 322 24444566777777777776 33322 344455666 777777
Q ss_pred ccCcc--cc--ccChhhhhccccCCCCCccEEEcCCCC-CCC-cchhhcCCCCccEEEcCCCc-Cc-cCChhhhcCCccc
Q 020238 168 AEGTA--IR--EVPLSIVRLNNFDGLQNLTSLYLTDCG-ITE-LPENLGQLSLLLELYLEKNN-FE-RLPESIIHLSKLA 239 (329)
Q Consensus 168 l~~~~--l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~L~~L~l~~~~-i~-~~~~~l~~~~~L~ 239 (329)
+++|. +. .++.. +..+++|++|++++|. +++ .+..+..+++|+.|++++|. +. .....+..+++|+
T Consensus 202 l~~~~~~~~~~~l~~~------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTL------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CCSCGGGSCHHHHHHH------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred eCCCcccCCHHHHHHH------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 77773 22 22222 2346677777777776 443 44556667777777777773 32 2123456677777
Q ss_pred eecccccccccc--cCCCCCCccEEeccCCCCCcCCCCC
Q 020238 240 YLKLSYCERLQS--LPKLPCNLSELDAHHCTALESSPGL 276 (329)
Q Consensus 240 ~L~l~~~~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~ 276 (329)
.|++++| ++. +......++.|++++|...+..|..
T Consensus 276 ~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 276 TLQVFGI--VPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp EEECTTS--SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred EEeccCc--cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 7777776 211 1111123555666655544444433
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.9e-21 Score=172.54 Aligned_cols=234 Identities=19% Similarity=0.125 Sum_probs=169.6
Q ss_pred cccCcccCcEEeccCCCCCcc----cCccccCCCcccEEeecCCCCC---CCCc-c-------cCCCCCccEEEecCccc
Q 020238 38 LTLHLDKLVNLNLNNCKSLRI----LPPGIFRLEFLKELDLWGCSKL---KTLP-E-------ISSAGNIEVMYLNGTAI 102 (329)
Q Consensus 38 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~~~-~-------~~~~~~L~~L~l~~~~i 102 (329)
.+..+++|++|++++|.+... ++..+..+++|++|++++|... ..+| . +..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 677889999999999987664 3445778999999999997433 2233 1 25678999999999988
Q ss_pred cc-----cchhhhcCCCCCEEEcCCCCCcccCC----ccccCC---------CCCcEEeccCCCCC-CCCC---cccCCC
Q 020238 103 EE-----LPSSIECLSGLSALYLDHCKRLKSLP----SSLCKL---------KSLNSIYLRWCSSL-KSLP---NELGNL 160 (329)
Q Consensus 103 ~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l 160 (329)
.. ++..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|... ..++ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 74 66778889999999999988753322 233334 89999999998765 2333 345677
Q ss_pred ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC-----CcchhhcCCCCccEEEcCCCcCcc-----CCh
Q 020238 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-----ELPENLGQLSLLLELYLEKNNFER-----LPE 230 (329)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~i~~-----~~~ 230 (329)
++|+.|++++|.+............+..+++|+.|++++|.++ .++..+..+++|+.|++++|.++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 8999999999987732100000002566889999999999885 367778889999999999998873 355
Q ss_pred hhhc--CCccceeccccccccc----ccCC----CCCCccEEeccCCCCCc
Q 020238 231 SIIH--LSKLAYLKLSYCERLQ----SLPK----LPCNLSELDAHHCTALE 271 (329)
Q Consensus 231 ~l~~--~~~L~~L~l~~~~~l~----~~~~----~~~~L~~L~l~~c~~l~ 271 (329)
.+.. +++|+.|++++|..-. .+|. .+++|+.|++++|+...
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 6643 8889999999876544 2553 24788888888887543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=6.6e-21 Score=165.75 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=169.4
Q ss_pred CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcc-cCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccE
Q 020238 17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI-LPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEV 94 (329)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~ 94 (329)
++++.|+++++. +...+. .+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+ .+..+++|++
T Consensus 70 ~~l~~L~l~~n~-l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCE-ECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCcc-ccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 799999999987 444443 356799999999999986654 77778899999999999997654443 4666899999
Q ss_pred EEecCc-ccc--ccchhhhcCCCCCEEEcCCC-CCccc-CCccccCCC-CCcEEeccCCC--CC-CCCCcccCCCccCcE
Q 020238 95 MYLNGT-AIE--ELPSSIECLSGLSALYLDHC-KRLKS-LPSSLCKLK-SLNSIYLRWCS--SL-KSLPNELGNLEALNS 165 (329)
Q Consensus 95 L~l~~~-~i~--~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~ 165 (329)
|++++| .++ .++..+..+++|++|++++| .+... ++..+..++ +|++|++++|. .. ..++..+..+++|+.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 999998 677 36777889999999999999 65443 566678899 99999999984 33 334556678899999
Q ss_pred EeccCcc-ccc-cChhhhhccccCCCCCccEEEcCCCC-CCC-cchhhcCCCCccEEEcCCCcCccCChhhhcC-Cccce
Q 020238 166 LNAEGTA-IRE-VPLSIVRLNNFDGLQNLTSLYLTDCG-ITE-LPENLGQLSLLLELYLEKNNFERLPESIIHL-SKLAY 240 (329)
Q Consensus 166 L~l~~~~-l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~-~~L~~ 240 (329)
|++++|. ++. .+.. +..+++|++|++++|. +++ ....+..+++|+.|++++| ++. ..+..+ ..+..
T Consensus 227 L~l~~~~~l~~~~~~~------l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~ 297 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQE------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPH 297 (336)
T ss_dssp EECTTCTTCCGGGGGG------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTT
T ss_pred EeCCCCCcCCHHHHHH------HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcc
Confidence 9999998 553 2222 4667999999999994 433 2235778999999999999 442 122232 23666
Q ss_pred ecccccccccccCC
Q 020238 241 LKLSYCERLQSLPK 254 (329)
Q Consensus 241 L~l~~~~~l~~~~~ 254 (329)
|++++|...+..|+
T Consensus 298 L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 298 LQINCSHFTTIARP 311 (336)
T ss_dssp SEESCCCSCCTTCS
T ss_pred eEEecccCccccCC
Confidence 66877665444443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=1.1e-18 Score=145.39 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=111.0
Q ss_pred ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEc
Q 020238 43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYL 120 (329)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l 120 (329)
+..++++++++. ...+|..+. ++++.|++++|.+....+ .+..+++|++|++++|.+..++. .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 456677777754 334555443 467777777776654444 35555777777777777765443 3566777777777
Q ss_pred CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238 121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC 200 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (329)
++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++... +..+++|++|++++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA-----FDKLTNLQTLSLSTN 165 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH-----cCcCcCCCEEECCCC
Confidence 776655444455666777777777776555443344566677777777777766665533 455667777777777
Q ss_pred CCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238 201 GITELPE-NLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 201 ~l~~~~~-~~~~~~~L~~L~l~~~~i~ 226 (329)
.+++++. .+..+++|+.|++++|.+.
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7766544 4556667777777777665
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.7e-19 Score=155.61 Aligned_cols=234 Identities=16% Similarity=0.135 Sum_probs=156.2
Q ss_pred eEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc--ccCCCCCccE-EE
Q 020238 20 KQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEV-MY 96 (329)
Q Consensus 20 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~-L~ 96 (329)
+.++.++++ ++.+|. .+ .+++++|++++|.+...-+.+|.++++|++|++++|.+.+.++ .+..++++.. +.
T Consensus 12 ~~v~C~~~~-Lt~iP~--~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPS--DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTT-CCSCCT--TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCC-CCccCc--Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 455555544 666664 23 3578888888877554333467778888888888877665554 3455566554 55
Q ss_pred ecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCc-ccCCCc-cCcEEeccCccc
Q 020238 97 LNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN-ELGNLE-ALNSLNAEGTAI 173 (329)
Q Consensus 97 l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~-~L~~L~l~~~~l 173 (329)
+.+|.+..++ ..+..+++|++|++++|.+....+..+....++..+++.++..+..++. .|..+. .++.|++++|++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 5667777664 4567788888888888776554444455556677788776655555543 455554 577888888888
Q ss_pred cccChhhhhccccCCCCCccEEEcCC-CCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccc
Q 020238 174 REVPLSIVRLNNFDGLQNLTSLYLTD-CGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQS 251 (329)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~ 251 (329)
+.++... + ...+++.+++.+ |.++.+|. .+..+++|+.|++++|+|+.+|. ..+.+|+.|.+.++..++.
T Consensus 167 ~~i~~~~-----f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 167 QEIHNSA-----F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp CEECTTS-----S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCC
T ss_pred cCCChhh-----c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCc
Confidence 8777654 2 235688888865 56777775 45778888888888888888874 2355566666666666777
Q ss_pred cC--CCCCCccEEeccC
Q 020238 252 LP--KLPCNLSELDAHH 266 (329)
Q Consensus 252 ~~--~~~~~L~~L~l~~ 266 (329)
+| +.+++|+.+++.+
T Consensus 239 lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 LPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCTTTCCSCCEEECSC
T ss_pred CCCchhCcChhhCcCCC
Confidence 77 4567788888765
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.2e-18 Score=150.63 Aligned_cols=236 Identities=19% Similarity=0.136 Sum_probs=182.5
Q ss_pred cEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCcccc-ccch-hhhcCCCCCEEE-cC
Q 020238 46 VNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPS-SIECLSGLSALY-LD 121 (329)
Q Consensus 46 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~-~~~~l~~L~~L~-l~ 121 (329)
++++-+++. ++.+|..+ .+++++|++++|.+....+ .+.++++|++|++++|.+. .++. .+..+++++++. +.
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 556666644 55677655 3689999999987653333 3677899999999999975 4554 467888888754 45
Q ss_pred CCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccC-ccccccChhhhhccccCCC-CCccEEEcCC
Q 020238 122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEG-TAIREVPLSIVRLNNFDGL-QNLTSLYLTD 199 (329)
Q Consensus 122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~ 199 (329)
+|.+....+..|..+++|++|++++|......+..+....++..+++.+ +.+..++... +..+ ..++.|++++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-----f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-----FVGLSFESVILWLNK 163 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-----STTSBSSCEEEECCS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc-----hhhcchhhhhhcccc
Confidence 5665555577789999999999999877655445556666788888865 5677666543 3444 4689999999
Q ss_pred CCCCCcchhhcCCCCccEEEcCC-CcCccCCh-hhhcCCccceecccccccccccC-CCCCCccEEeccCCCCCcCCCCC
Q 020238 200 CGITELPENLGQLSLLLELYLEK-NNFERLPE-SIIHLSKLAYLKLSYCERLQSLP-KLPCNLSELDAHHCTALESSPGL 276 (329)
Q Consensus 200 ~~l~~~~~~~~~~~~L~~L~l~~-~~i~~~~~-~l~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~ 276 (329)
|.+++++.......+|+++++++ |.++.+|. .+..+++|+.|++++|. ++.+| ..+.+|+.|.+.++..++.+|.
T Consensus 164 N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCC-
T ss_pred ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCC-
Confidence 99999988888888999999985 68889984 67899999999999974 77777 4678999999999999999974
Q ss_pred CCCCCCCcEEEcCCC
Q 020238 277 VFPSRDPQYFDLRNN 291 (329)
Q Consensus 277 ~~~~~~L~~L~i~~~ 291 (329)
+..+++|+.+++.+.
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 566788999998764
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=1.2e-20 Score=165.86 Aligned_cols=244 Identities=16% Similarity=0.081 Sum_probs=154.5
Q ss_pred EEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccC----ccccCCC-cccEEeecCCCCCCCCc-ccCC----C-C
Q 020238 22 IISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP----PGIFRLE-FLKELDLWGCSKLKTLP-EISS----A-G 90 (329)
Q Consensus 22 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~----~-~ 90 (329)
+.++.+......+. .+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+ .+.. . +
T Consensus 3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45666653333332 34445569999999988655433 5667777 89999999987665433 2222 2 7
Q ss_pred CccEEEecCccccccch-----hhhcC-CCCCEEEcCCCCCcccCCcc----ccC-CCCCcEEeccCCCCCCCC----Cc
Q 020238 91 NIEVMYLNGTAIEELPS-----SIECL-SGLSALYLDHCKRLKSLPSS----LCK-LKSLNSIYLRWCSSLKSL----PN 155 (329)
Q Consensus 91 ~L~~L~l~~~~i~~~~~-----~~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~----~~ 155 (329)
+|++|++++|.+...+. .+..+ ++|++|++++|.+....+.. +.. .++|++|++++|...... +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 88888888888874332 24445 78888888888765544333 333 358888888887665432 23
Q ss_pred ccCCCc-cCcEEeccCccccccChh-hhhccccCCC-CCccEEEcCCCCCCC-----cchhhcC-CCCccEEEcCCCcCc
Q 020238 156 ELGNLE-ALNSLNAEGTAIREVPLS-IVRLNNFDGL-QNLTSLYLTDCGITE-----LPENLGQ-LSLLLELYLEKNNFE 226 (329)
Q Consensus 156 ~~~~l~-~L~~L~l~~~~l~~~~~~-~~~~~~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~-~~~L~~L~l~~~~i~ 226 (329)
.+...+ +|+.|++++|.+...... +.. .+..+ ++|++|++++|.+++ ++..+.. .++|+.|++++|.++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAK--FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHH--HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHH--HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 334444 788888888888755432 111 03344 488888888888876 5555555 458888888888887
Q ss_pred cCC-----hhhhcCCccceeccccccc-------ccccC---CCCCCccEEeccCCCC
Q 020238 227 RLP-----ESIIHLSKLAYLKLSYCER-------LQSLP---KLPCNLSELDAHHCTA 269 (329)
Q Consensus 227 ~~~-----~~l~~~~~L~~L~l~~~~~-------l~~~~---~~~~~L~~L~l~~c~~ 269 (329)
..+ ..+..+++|+.|++++|.. +..++ ...++|+.|++++|..
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 443 2345567888888888751 11111 2345677777777763
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=3.5e-21 Score=180.10 Aligned_cols=131 Identities=17% Similarity=0.099 Sum_probs=61.0
Q ss_pred cCCCCceEEEecCCCCcccCCC---cccccCcccCcEEeccCCCCC----cccCccccCCCcccEEeecCCCCCCC----
Q 020238 14 QHNGKLKQIISRASNFFTKSPN---HSLTLHLDKLVNLNLNNCKSL----RILPPGIFRLEFLKELDLWGCSKLKT---- 82 (329)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~---- 82 (329)
..|++|++|++++|. +.+... ......+++|++|++++|.+. ..++..+..+++|++|++++|...+.
T Consensus 161 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred hhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 456666666666664 222110 012334555555555555443 12233334455566666655432210
Q ss_pred -----------------------CcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccC-CccccCCCC
Q 020238 83 -----------------------LPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSL-PSSLCKLKS 138 (329)
Q Consensus 83 -----------------------~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~ 138 (329)
...+..+++|+.+++++.....++..+..+++|++|++++|.+.... ...+..+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 11222334455555544433344555555666666666666532221 122344555
Q ss_pred CcEEecc
Q 020238 139 LNSIYLR 145 (329)
Q Consensus 139 L~~L~l~ 145 (329)
|+.|++.
T Consensus 320 L~~L~L~ 326 (592)
T 3ogk_B 320 LEVLETR 326 (592)
T ss_dssp CCEEEEE
T ss_pred CCEEecc
Confidence 5555554
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=4.2e-21 Score=179.63 Aligned_cols=233 Identities=17% Similarity=0.074 Sum_probs=139.2
Q ss_pred ccCCCcccEEeecCCCCCCCCcc-cCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcc-cCCccccCCCC
Q 020238 63 IFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLK-SLPSSLCKLKS 138 (329)
Q Consensus 63 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~ 138 (329)
+..+++|+.++++++. ...++. +..+++|++|++++|.+. .+...+..+++|++|++.+ .... .++..+..+++
T Consensus 266 l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCC
Confidence 3445566666665532 223343 334578888999888765 2334457788888888884 3322 23333456788
Q ss_pred CcEEeccC----------CCCCCC--CCcccCCCccCcEEeccCccccccCh-hhhhccccCCCCCccEEEcC----CCC
Q 020238 139 LNSIYLRW----------CSSLKS--LPNELGNLEALNSLNAEGTAIREVPL-SIVRLNNFDGLQNLTSLYLT----DCG 201 (329)
Q Consensus 139 L~~L~l~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~----~~~ 201 (329)
|++|++++ |...+. ++.....+++|+.|++..+.+..... .+ ...+++|++|+++ .+.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI-----GTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH-----HHHCCSCCEEEEEECSCCSC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH-----HhhCCCCcEEEEeecCCCcc
Confidence 88888884 444332 11223457788888887776653211 11 1236788888885 456
Q ss_pred CCCc------chhhcCCCCccEEEcCCCc--Cc-cCChhh-hcCCccceeccccccccc----ccCCCCCCccEEeccCC
Q 020238 202 ITEL------PENLGQLSLLLELYLEKNN--FE-RLPESI-IHLSKLAYLKLSYCERLQ----SLPKLPCNLSELDAHHC 267 (329)
Q Consensus 202 l~~~------~~~~~~~~~L~~L~l~~~~--i~-~~~~~l-~~~~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~c 267 (329)
+++. +..+..+++|+.|++++|. ++ ..+..+ ..+++|+.|++++|..-. .+...+++|++|++++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 6653 2335568888888887653 44 222333 347788888888776321 12245678888888888
Q ss_pred CCCcC-CCCCCCCCCCCcEEEcCCCcccchhHHHHHh
Q 020238 268 TALES-SPGLVFPSRDPQYFDLRNNLKLDRNEIREIL 303 (329)
Q Consensus 268 ~~l~~-~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~ 303 (329)
+.... ++.....+++|++|++++|. +++.+...+.
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~ 534 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQ 534 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGG
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHH
Confidence 73211 22233356678888888887 7776655543
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=5e-18 Score=141.42 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=146.9
Q ss_pred CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEE
Q 020238 17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVM 95 (329)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L 95 (329)
...++++++++. +...|. .+ .++++.|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|
T Consensus 14 ~~~~~l~~~~~~-l~~~p~--~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPS--GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCC-CSSCCS--CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCC-ccccCC--CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 567889998876 777775 33 26899999999988777777888999999999999887665553 5667999999
Q ss_pred EecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238 96 YLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR 174 (329)
Q Consensus 96 ~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 174 (329)
++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 999999997764 5688999999999998876555556788999999999998776555557889999999999999999
Q ss_pred ccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238 175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITE 204 (329)
Q Consensus 175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 204 (329)
.++... +..+++|+.|++++|.+..
T Consensus 169 ~~~~~~-----~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 SVPHGA-----FDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTT-----TTTCTTCCEEECCSCCBCT
T ss_pred ccCHHH-----HhCCCCCCEEEeeCCceeC
Confidence 887654 6778999999999998764
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=5.2e-18 Score=156.28 Aligned_cols=193 Identities=21% Similarity=0.266 Sum_probs=130.3
Q ss_pred CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238 18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 97 (329)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 97 (329)
+++.|++++|. +..+|. .+ +++|+.|++++|.+. .+| ..+++|++|++++|.+.. +|.+. .+|+.|++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~--~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~--~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPD--NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELP--ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSC-CSCCCS--CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEEC
T ss_pred CccEEEeCCCC-CCccCH--hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhh--cCCCEEEC
Confidence 78888888876 555654 23 367888888887755 566 346788888888876554 55532 27888888
Q ss_pred cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238 98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP 177 (329)
Q Consensus 98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 177 (329)
++|.++.+|. .+++|++|++++|.+.. +|. .+++|+.|++++|.+.. +|. +. ++|+.|++++|.+..+|
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh
Confidence 8888877766 57788888888877544 544 46778888888866554 665 54 77888888888877776
Q ss_pred hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcC
Q 020238 178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHL 235 (329)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~ 235 (329)
. +.. .-....+.|+.|++++|.++.+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus 197 ~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 5 311 0011122238888888888887777777888888888888776 555555543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=6.4e-18 Score=155.69 Aligned_cols=181 Identities=18% Similarity=0.240 Sum_probs=150.0
Q ss_pred cCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCC
Q 020238 44 KLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHC 123 (329)
Q Consensus 44 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~ 123 (329)
+|+.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|+.|++++|.++.+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 89999999987654 77655 378999999998765 666 446999999999999998887 544 9999999998
Q ss_pred CCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC
Q 020238 124 KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT 203 (329)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 203 (329)
.+.. +|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.+..+|. + . ++|+.|++++|.++
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l------~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-L------P--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-C------C--TTCCEEECCSSCCS
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-h------h--CCCCEEECcCCCCC
Confidence 8655 655 68899999999977654 665 56899999999999998876 3 2 89999999999999
Q ss_pred CcchhhcCCCCc-------cEEEcCCCcCccCChhhhcCCccceecccccccccccC
Q 020238 204 ELPENLGQLSLL-------LELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP 253 (329)
Q Consensus 204 ~~~~~~~~~~~L-------~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~ 253 (329)
.+|. +.. +| +.|++++|+|+.+|..+..+++|+.|++++|+..+.+|
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 9887 543 77 99999999999999988899999999999998765555
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=6.9e-18 Score=143.58 Aligned_cols=172 Identities=25% Similarity=0.329 Sum_probs=82.9
Q ss_pred ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238 39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL 118 (329)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L 118 (329)
...+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.. ++.+..+++|+.|++++|.+..++. +..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-CcccccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3445566666666654332 22 24455566666666554432 2224445555555555555554432 4555555555
Q ss_pred EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238 119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198 (329)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 198 (329)
++++|.+.. + ..+..+++|+.|++++|..... ..+..+++|+.|++++|.+..++. +..+++|+.|+++
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-------l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYLS 186 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECC
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-------hcCCCccCEEECC
Confidence 555554332 2 2344455555555555433322 234444455555555554444332 2334455555555
Q ss_pred CCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238 199 DCGITELPENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 199 ~~~l~~~~~~~~~~~~L~~L~l~~~~i~ 226 (329)
+|.+++++. +..+++|+.|++++|+++
T Consensus 187 ~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 187 KNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred CCcCCCChh-hccCCCCCEEECcCCccc
Confidence 555544432 444555555555555444
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=8.7e-18 Score=142.96 Aligned_cols=191 Identities=27% Similarity=0.346 Sum_probs=155.3
Q ss_pred cccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcC
Q 020238 42 LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLD 121 (329)
Q Consensus 42 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~ 121 (329)
+..+..+.+.+....... ....+++|++|++++|.+ ..++.+..+++|+.|++++|.+..++. +..+++|++|+++
T Consensus 23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence 334555566665443332 235688999999999765 455777788999999999999998877 8899999999999
Q ss_pred CCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC
Q 020238 122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG 201 (329)
Q Consensus 122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 201 (329)
+|.+.. ++ .+..+++|+.|++++|.... + ..+..+++|+.|++++|.+..++ . +..+++|+.|++++|.
T Consensus 99 ~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~------l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 99 ENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDIT-V------LSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp SSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSSC
T ss_pred CCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcch-h------hccCCCCCEEEccCCc
Confidence 988644 33 48889999999999987655 3 46788999999999999988762 2 5678999999999999
Q ss_pred CCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc
Q 020238 202 ITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL 249 (329)
Q Consensus 202 l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l 249 (329)
+++++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+..
T Consensus 168 l~~~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 168 ISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEE
T ss_pred cccchh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCccc
Confidence 999876 888999999999999999886 4889999999999998643
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=7.8e-18 Score=136.14 Aligned_cols=154 Identities=20% Similarity=0.297 Sum_probs=74.2
Q ss_pred CCccEEEecCccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238 90 GNIEVMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA 168 (329)
Q Consensus 90 ~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 168 (329)
+++++|+++++.+..++.. +..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555666665555544332 345555555555555443333333445555555555554444332333445555555555
Q ss_pred cCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238 169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
++|.+..++... +..+++|++|++++|.+++++.. +..+++|+.|++++|.+. ..++.|+.|++++|.
T Consensus 108 ~~N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 108 NTNQLQSLPDGV-----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINK 176 (208)
T ss_dssp CSSCCCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHH
T ss_pred CCCcCcccCHhH-----hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHh
Confidence 555555444332 34445555555555555544332 344555555555555332 223344555555444
Q ss_pred cccccCC
Q 020238 248 RLQSLPK 254 (329)
Q Consensus 248 ~l~~~~~ 254 (329)
..+.+|.
T Consensus 177 ~~g~ip~ 183 (208)
T 2o6s_A 177 HSGVVRN 183 (208)
T ss_dssp CTTTBBC
T ss_pred CCceeec
Confidence 4444443
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.5e-17 Score=154.78 Aligned_cols=176 Identities=26% Similarity=0.332 Sum_probs=119.0
Q ss_pred cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCE
Q 020238 38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSA 117 (329)
Q Consensus 38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~ 117 (329)
....+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.. ++.+..+++|+.|++++|.+..++ .+..+++|++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 35667788888888776433 33 46677888888888876543 334666777888888877777654 5677777777
Q ss_pred EEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEc
Q 020238 118 LYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYL 197 (329)
Q Consensus 118 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 197 (329)
|++++|.+.. + ..+..+++|+.|++++|..... ..+..+++|+.|++++|.+..++. +..+++|+.|++
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEEC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-------hccCCCCCEEEC
Confidence 7777776543 2 3466677777777777655543 456677777777777777665543 345677777777
Q ss_pred CCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238 198 TDCGITELPENLGQLSLLLELYLEKNNFERLP 229 (329)
Q Consensus 198 ~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~ 229 (329)
++|.+++++ .+..+++|+.|++++|++...|
T Consensus 183 s~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 183 SKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred cCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 777777764 4666777777777777666443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.3e-17 Score=133.73 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=50.7
Q ss_pred ccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC-CCCcchhhcC
Q 020238 133 LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG-ITELPENLGQ 211 (329)
Q Consensus 133 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~ 211 (329)
+..+++|++|++++|......+..+..+++|+.|++++|.+....... +..+++|++|++++|. +++++ .+..
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-----l~~l~~L~~L~L~~n~~i~~~~-~l~~ 157 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-----INTLPKVNSIDLSYNGAITDIM-PLKT 157 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-----HTTCSSCCEEECCSCTBCCCCG-GGGG
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-----HhhCCCCCEEEccCCCCccccH-hhcC
Confidence 333444444444444333333334444444444444444444311111 2344555555555554 44444 3455
Q ss_pred CCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238 212 LSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 212 ~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 247 (329)
+++|+.|++++|+++.++ .+..+++|+.|++++|+
T Consensus 158 l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 555555555555555544 44555555555555543
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=3.7e-17 Score=130.98 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=114.8
Q ss_pred cCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEe
Q 020238 64 FRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY 143 (329)
Q Consensus 64 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 143 (329)
..+++|++|++++|.+. .++.+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 55778888888887654 5556677788888888888766554 577788888888888777666667777888888888
Q ss_pred ccCCCCCCCCCcccCCCccCcEEeccCcc-ccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCC
Q 020238 144 LRWCSSLKSLPNELGNLEALNSLNAEGTA-IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK 222 (329)
Q Consensus 144 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 222 (329)
+++|......+..+..+++|+.|++++|. +..++ . +..+++|+.|++++|.+++++ .+..+++|+.|++++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~------l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P------LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G------GGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h------hcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 88877776666777788888888888886 66664 2 456788888888888888876 577788888888888
Q ss_pred CcCc
Q 020238 223 NNFE 226 (329)
Q Consensus 223 ~~i~ 226 (329)
|+|.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 8765
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=8.6e-17 Score=129.98 Aligned_cols=176 Identities=19% Similarity=0.194 Sum_probs=114.2
Q ss_pred EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238 94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI 173 (329)
Q Consensus 94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 173 (329)
.++.+++.+..+|..+ .+++++|++++|.+....+..+..+++|++|++++|......+..|..+++|+.|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4455555555555433 35777777777765544444566777777777777655544344466777777777777777
Q ss_pred cccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCCh-hhhcCCccceecccccccccc
Q 020238 174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERLQS 251 (329)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~l~~ 251 (329)
..++... +..+++|++|++++|.+++++.. +..+++|+.|++++|+++.++. .+..+++|+.|++++|+...
T Consensus 89 ~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 89 QSLPNGV-----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CccCHhH-----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 7665544 45677777777777777776543 5667777777777777776653 35667777777777775433
Q ss_pred cCCCCCCccEEeccCCCCCcCCCCCCCCC
Q 020238 252 LPKLPCNLSELDAHHCTALESSPGLVFPS 280 (329)
Q Consensus 252 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 280 (329)
.+++|+.|+++.|...+.+|..+..+
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccc
Confidence 23467777777776666666555544
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=7.5e-17 Score=132.28 Aligned_cols=131 Identities=24% Similarity=0.313 Sum_probs=60.3
Q ss_pred CCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238 90 GNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA 168 (329)
Q Consensus 90 ~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 168 (329)
++|+.|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4555555555555533 333445555555555554442222233444555555555554433332333444455555555
Q ss_pred cCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238 169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~ 226 (329)
++|.+..+|..+ ..+++|+.|++++|.+++++. .+..+++|+.|++++|.+.
T Consensus 120 s~N~l~~lp~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGI------ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTG------GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCccc------ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555544444332 234445555555554444432 2344445555555554443
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=7.5e-20 Score=171.16 Aligned_cols=286 Identities=15% Similarity=0.068 Sum_probs=154.6
Q ss_pred hhhhccCCCCceEEEecCCCCcccCCC---cccccCcccCcEEeccCCC--CCc-ccCccccCCCcccEEeecCCCCCCC
Q 020238 9 LWDSVQHNGKLKQIISRASNFFTKSPN---HSLTLHLDKLVNLNLNNCK--SLR-ILPPGIFRLEFLKELDLWGCSKLKT 82 (329)
Q Consensus 9 l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 82 (329)
++.....+++|++|++++|. +.+... ......+++|++|++++|. +.. .++.....+++|++|++++|.....
T Consensus 148 l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 226 (594)
T 2p1m_B 148 LAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226 (594)
T ss_dssp HHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH
T ss_pred HHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH
Confidence 44445678899999998887 333221 1123467788888888775 111 1222223467777777777622111
Q ss_pred Ccc-cC------------------------------------------------------CCCCccEEEecCcccc--cc
Q 020238 83 LPE-IS------------------------------------------------------SAGNIEVMYLNGTAIE--EL 105 (329)
Q Consensus 83 ~~~-~~------------------------------------------------------~~~~L~~L~l~~~~i~--~~ 105 (329)
++. +. .+++|+.|+++++.+. .+
T Consensus 227 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306 (594)
T ss_dssp HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH
T ss_pred HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH
Confidence 111 11 1244555555544433 11
Q ss_pred chhhhcCCCCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCC--------CCCCCC-Cccc-CCCccCcEEeccCcccc
Q 020238 106 PSSIECLSGLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWC--------SSLKSL-PNEL-GNLEALNSLNAEGTAIR 174 (329)
Q Consensus 106 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~--------~~~~~~-~~~~-~~l~~L~~L~l~~~~l~ 174 (329)
...+..+++|++|++.+| ... .++.....+++|++|++.+| ...+.. ...+ ..+++|+.|.+.++.+.
T Consensus 307 ~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 222334455555555544 111 11111223555566655322 111100 0011 13556666666555554
Q ss_pred ccChhhhhccccCCCCCccEEEcC--C----CCCCCc------chhhcCCCCccEEEcCCCcCc-cCChhhhc-CCccce
Q 020238 175 EVPLSIVRLNNFDGLQNLTSLYLT--D----CGITEL------PENLGQLSLLLELYLEKNNFE-RLPESIIH-LSKLAY 240 (329)
Q Consensus 175 ~~~~~~~~~~~~~~~~~L~~L~l~--~----~~l~~~------~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~-~~~L~~ 240 (329)
...... + ...+++|+.|+++ + +.+++. +..+..+++|+.|++++ .++ .....+.. +++|+.
T Consensus 386 ~~~~~~--l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 386 NAALIT--I--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp HHHHHH--H--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred HHHHHH--H--HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 321111 0 1246888888888 3 456632 23356788899999977 555 33344444 888999
Q ss_pred ecccccccccccC----CCCCCccEEeccCCCCCcCCC-CCCCCCCCCcEEEcCCCcccchhHHHHH
Q 020238 241 LKLSYCERLQSLP----KLPCNLSELDAHHCTALESSP-GLVFPSRDPQYFDLRNNLKLDRNEIREI 302 (329)
Q Consensus 241 L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~~~~~~~ 302 (329)
|++++|....... ..+++|+.|++++|+...... .....+++|++|++++|+. +......+
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l 526 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLL 526 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHH
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHH
Confidence 9999887422111 346899999999998632221 2334467899999999976 66666554
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=8.7e-20 Score=170.71 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=79.4
Q ss_pred ccCCCCceEEEecCCCCcccCCCc-------------ccccCcccCcEEeccCCCCCcccCcccc-CCCcccEEeecCCC
Q 020238 13 VQHNGKLKQIISRASNFFTKSPNH-------------SLTLHLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCS 78 (329)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~ 78 (329)
+.++++|++|++++|..+.+.... .....+++|++|++++|.+....+..+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 445677777777777644332210 0123566777777777665444333333 46677777777664
Q ss_pred CCCC--CcccC-CCCCccEEEecCccccc-----cchhhhcCCCCCEEEcCCCC--Ccc-cCCccccCCCCCcEEeccCC
Q 020238 79 KLKT--LPEIS-SAGNIEVMYLNGTAIEE-----LPSSIECLSGLSALYLDHCK--RLK-SLPSSLCKLKSLNSIYLRWC 147 (329)
Q Consensus 79 ~~~~--~~~~~-~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~ 147 (329)
.... ++.+. .+++|++|++++|.+.. ++.....+++|++|++++|. ... .+...+..+++|+.|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3322 22222 45667777777666542 22222345667777776654 110 11111234566666666665
Q ss_pred CCCCCCCcccCCCccCcEEe
Q 020238 148 SSLKSLPNELGNLEALNSLN 167 (329)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~L~ 167 (329)
...+.++..+..+++|+.|+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEE
T ss_pred CcHHHHHHHHhcCCcceEcc
Confidence 33333333333444444444
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.6e-17 Score=152.21 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=150.5
Q ss_pred CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238 3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT 82 (329)
Q Consensus 3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 82 (329)
+++++.+. .+..+++|+.|++++|. +...+ .+..+++|+.|+|++|.+....+ +..+++|+.|++++|.+. .
T Consensus 30 ~~~i~~~~-~~~~L~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~ 101 (605)
T 1m9s_A 30 KKSVTDAV-TQNELNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-D 101 (605)
T ss_dssp CSCTTSEE-CHHHHTTCCCCBCTTCC-CCCCT---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-C
T ss_pred CCCccccc-chhcCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-C
Confidence 34444442 24568899999999987 66555 47889999999999998665433 788999999999998654 5
Q ss_pred CcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCcc
Q 020238 83 LPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEA 162 (329)
Q Consensus 83 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 162 (329)
++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....| +..+++
T Consensus 102 l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~ 176 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 176 (605)
T ss_dssp CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC
Confidence 677888899999999999998764 588999999999999886553 568899999999999987766544 889999
Q ss_pred CcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc
Q 020238 163 LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP 206 (329)
Q Consensus 163 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 206 (329)
|+.|++++|.+..++. +..+++|+.|++++|.+.+.|
T Consensus 177 L~~L~Ls~N~i~~l~~-------l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 177 LQNLYLSKNHISDLRA-------LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCEEECCSSCCCBCGG-------GTTCTTCSEEECCSEEEECCC
T ss_pred CCEEECcCCCCCCChH-------HccCCCCCEEEccCCcCcCCc
Confidence 9999999999987642 567899999999999887644
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=8.8e-17 Score=131.01 Aligned_cols=132 Identities=21% Similarity=0.255 Sum_probs=74.2
Q ss_pred CCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238 90 GNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA 168 (329)
Q Consensus 90 ~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 168 (329)
++++.|++++|.+..++. .+..+++|++|++++|.+....+..|.++++|++|++++|.+...-+..|..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456666666666665443 4555666666666666555444555666666666666665444332333455566666666
Q ss_pred cCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238 169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~ 226 (329)
++|.+..++... +..+++|+.|++++|.+++++. .+..+++|+.|++++|.+.
T Consensus 112 ~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDA-----FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHH-----cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666655544332 4455566666666666655443 3445556666666665553
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=4e-16 Score=136.84 Aligned_cols=177 Identities=19% Similarity=0.207 Sum_probs=128.1
Q ss_pred CcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cC-CCCCccEEEecCccccccc-hhhhcCCCCCEEEcC
Q 020238 45 LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-IS-SAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLD 121 (329)
Q Consensus 45 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~ 121 (329)
-+.++++++. +..+|..+. +.++.|++++|.+....+. +. .+++|+.|++++|.+..++ ..+..+++|++|+++
T Consensus 20 ~~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3577888755 444666443 4588899998876554443 33 5688888888888888665 457888888888888
Q ss_pred CCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC
Q 020238 122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG 201 (329)
Q Consensus 122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 201 (329)
+|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+..++..... .+..+++|+.|++++|.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK--DGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------CTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc--CcccCCcCCEEECCCCC
Confidence 8876655556678888888888888777766677788888888888888888887765410 01457888888888888
Q ss_pred CCCcch-hhcCCCC--ccEEEcCCCcCc
Q 020238 202 ITELPE-NLGQLSL--LLELYLEKNNFE 226 (329)
Q Consensus 202 l~~~~~-~~~~~~~--L~~L~l~~~~i~ 226 (329)
++.++. .+..++. ++.|++++|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 888663 4556665 477888888775
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=3.8e-16 Score=127.28 Aligned_cols=150 Identities=22% Similarity=0.189 Sum_probs=103.8
Q ss_pred cEEeecCCCCCCCCcccCCCCCccEEEecCccccccc--hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCC
Q 020238 70 KELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWC 147 (329)
Q Consensus 70 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (329)
++++++++.+. .+|.. -...++.|++++|.+..++ ..+..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCS-SCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 47777776543 34421 1245678888888877653 23677888888888887765555556777788888888877
Q ss_pred CCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCc
Q 020238 148 SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~ 226 (329)
......+..|..+++|+.|++++|.+..++... +..+++|+.|++++|.++++ |..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-----FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-----STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-----cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 666555556777777888888887777664433 56677777888887777775 556677777777877777765
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=7.3e-17 Score=135.18 Aligned_cols=172 Identities=18% Similarity=0.177 Sum_probs=105.9
Q ss_pred CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEc
Q 020238 41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYL 120 (329)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 120 (329)
.+.++..++++++.+.. ++ .+..+++|++|++++|.+. .++.+..+++|+.|++++|.+..++. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 45667777777766443 23 4566788888888886543 45566666777777777777776665 677777777777
Q ss_pred CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238 121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC 200 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (329)
++|.+.. ++. +.. ++|+.|++++|.... + ..+..+++|+.|++++|.+..++ . +..+++|+.|++++|
T Consensus 93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~------l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-M------LGFLSKLEVLDLHGN 160 (263)
T ss_dssp CSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-G------GGGCTTCCEEECTTS
T ss_pred CCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-H------HccCCCCCEEECCCC
Confidence 7766433 332 222 666777776654443 2 23556666666666666666543 1 344566666666666
Q ss_pred CCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238 201 GITELPENLGQLSLLLELYLEKNNFERLP 229 (329)
Q Consensus 201 ~l~~~~~~~~~~~~L~~L~l~~~~i~~~~ 229 (329)
.++++ ..+..+++|+.|++++|.++..|
T Consensus 161 ~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 161 EITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 66665 44555666666666666555333
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.8e-19 Score=166.58 Aligned_cols=177 Identities=21% Similarity=0.197 Sum_probs=83.6
Q ss_pred cCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC-------------CCCCc-ccCCCCCccEEE-ecCccccc
Q 020238 40 LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK-------------LKTLP-EISSAGNIEVMY-LNGTAIEE 104 (329)
Q Consensus 40 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------------~~~~~-~~~~~~~L~~L~-l~~~~i~~ 104 (329)
..+++|+.|++++|.+ +.+|..+..+++|++|++++|.. .+..| .+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 5577888888887653 46777777788888888765431 11111 112223344443 22222221
Q ss_pred cch------hhhc--CCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccccc
Q 020238 105 LPS------SIEC--LSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREV 176 (329)
Q Consensus 105 ~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 176 (329)
++. .+.. ...|+.|++++|.+.. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence 110 0000 1134555555544322 333 444555555555554333 4444444445555555555544443
Q ss_pred ChhhhhccccCCCCCccEEEcCCCCCCCc--chhhcCCCCccEEEcCCCcCcc
Q 020238 177 PLSIVRLNNFDGLQNLTSLYLTDCGITEL--PENLGQLSLLLELYLEKNNFER 227 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~i~~ 227 (329)
| . +..+++|+.|++++|.++++ |..++.+++|+.|++++|+++.
T Consensus 502 p-~------l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 502 D-G------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp G-G------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred c-c------cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 3 1 23344455555555544443 4444445555555555554443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=5.4e-16 Score=129.84 Aligned_cols=151 Identities=24% Similarity=0.256 Sum_probs=76.0
Q ss_pred ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238 39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL 118 (329)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L 118 (329)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.. ++.+..+++|+.|++++|.+..++.... ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 445555555555555432 233 34455555555555554332 2224445555555555555554443222 555556
Q ss_pred EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238 119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198 (329)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 198 (329)
++++|.+.. + ..+..+++|+.|++++|...+ ++ .+..+++|+.|++++|.+..+. . +..+++|+.|+++
T Consensus 112 ~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~-~------l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 112 FLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTG-G------LTRLKKVNWIDLT 180 (263)
T ss_dssp ECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCT-T------STTCCCCCEEEEE
T ss_pred EccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchH-H------hccCCCCCEEeCC
Confidence 655554332 2 235555556666665544333 22 3455556666666666555441 1 3445666666666
Q ss_pred CCCCCCc
Q 020238 199 DCGITEL 205 (329)
Q Consensus 199 ~~~l~~~ 205 (329)
+|.++..
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 6655543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=1.9e-15 Score=123.03 Aligned_cols=149 Identities=23% Similarity=0.327 Sum_probs=103.4
Q ss_pred cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
+.++.+++.+..+|..+. +++++|++++|.+....+..+..+++|++|++++|......|..|.++++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 355566666666665442 577777777776655555567777777777777776666666677777777777777777
Q ss_pred ccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccccc
Q 020238 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCER 248 (329)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~ 248 (329)
+..++... +.++++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|+.
T Consensus 92 l~~l~~~~-----f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSL-----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhH-----ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77776655 56677777777777777775 345667777777777777777665 3466677777777777654
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=2.1e-15 Score=122.79 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=69.3
Q ss_pred EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
.++++++.++.+|..+ .+.+++|++++|.+....+ ..+..+++|+.|++++|.+....+..|..+++|+.|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4455555554444432 2234455555544433322 224445555555555544433333344555555555555555
Q ss_pred ccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccc
Q 020238 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~ 247 (329)
+..++... +..+++|+.|++++|.++++ |..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+
T Consensus 93 l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKM-----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGG-----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCHhH-----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 55444333 34445555555555555543 33344455555555555555533 3444455555555555544
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=9e-16 Score=134.62 Aligned_cols=173 Identities=20% Similarity=0.209 Sum_probs=138.4
Q ss_pred cEEeecCCCCCCCCcccCCCCCccEEEecCccccccchh-hh-cCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCC
Q 020238 70 KELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IE-CLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWC 147 (329)
Q Consensus 70 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (329)
+.++++++.+ ..+|.. -...++.|++++|.+..++.. +. .+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l-~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQL-PNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCC-SSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCc-CccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5788887654 345531 125689999999999977654 44 8999999999998877666677889999999999998
Q ss_pred CCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh----cCCCCccEEEcCCC
Q 020238 148 SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL----GQLSLLLELYLEKN 223 (329)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~L~~L~l~~~ 223 (329)
.+....+..|..+++|+.|++++|.+..++... +..+++|+.|++++|.++.+|..+ ..+++|+.|++++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-----FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHH-----hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 776655567889999999999999998776544 678899999999999999988765 56899999999999
Q ss_pred cCccCC-hhhhcCCc--cceecccccccc
Q 020238 224 NFERLP-ESIIHLSK--LAYLKLSYCERL 249 (329)
Q Consensus 224 ~i~~~~-~~l~~~~~--L~~L~l~~~~~l 249 (329)
+|+.++ ..+..++. ++.|++++|+..
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 999888 56777776 488999987754
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=2.6e-15 Score=123.12 Aligned_cols=151 Identities=19% Similarity=0.136 Sum_probs=114.4
Q ss_pred ceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEEEe
Q 020238 19 LKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYL 97 (329)
Q Consensus 19 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 97 (329)
-+.++.+++. +..+|. .+ .++|++|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++
T Consensus 21 ~~~v~c~~~~-l~~ip~--~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPA--GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSC-CSSCCS--CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCC-cCccCC--CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4567776655 666665 22 37888888888887776677788888888898888776433333 456688889999
Q ss_pred cCccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc
Q 020238 98 NGTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE 175 (329)
Q Consensus 98 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 175 (329)
++|.+..++.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|......+..+..+++|+.|++++|.+..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88888877654 577889999999887754 677778888899999998876665544567888899999999888763
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.3e-15 Score=118.66 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=81.2
Q ss_pred CCCCCEEEcCCCCCc-ccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc-cChhhhhccccCCC
Q 020238 112 LSGLSALYLDHCKRL-KSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE-VPLSIVRLNNFDGL 189 (329)
Q Consensus 112 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~ 189 (329)
.++|++|++++|.+. ..+|..+..+++|++|++++|..... ..+..+++|+.|++++|.+.. ++.. +..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML------AEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH------HHHC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH------HhhC
Confidence 355666666665544 24555555566666666666554333 455666667777777766665 3322 2336
Q ss_pred CCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCccCCh----hhhcCCccceecccccc
Q 020238 190 QNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFERLPE----SIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 190 ~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~~~~~----~l~~~~~L~~L~l~~~~ 247 (329)
++|+.|++++|.+++++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 67777777777777754 456677777777777777776664 56677777777777765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.4e-17 Score=153.92 Aligned_cols=193 Identities=16% Similarity=0.104 Sum_probs=140.9
Q ss_pred cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCC-------------CCcccCccccCCCcccEEe-ecCCCC
Q 020238 14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK-------------SLRILPPGIFRLEFLKELD-LWGCSK 79 (329)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~ 79 (329)
..+++|+.|++++|+ +..+|. .++.|++|++|++++|. ..+..|..+..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~--~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQS--ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhh-HHhhHH--HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 457778888888776 566665 67778888888876653 3334555666677777777 443311
Q ss_pred CCCCc-------ccCC--CCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCC
Q 020238 80 LKTLP-------EISS--AGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSL 150 (329)
Q Consensus 80 ~~~~~-------~~~~--~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 150 (329)
. .++ .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 423 ~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 423 D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred c-hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1 111 0111 1358889999999988886 888999999999998765 77888889999999999997666
Q ss_pred CCCCcccCCCccCcEEeccCcccccc--ChhhhhccccCCCCCccEEEcCCCCCCCcchh----hcCCCCccEEEc
Q 020238 151 KSLPNELGNLEALNSLNAEGTAIREV--PLSIVRLNNFDGLQNLTSLYLTDCGITELPEN----LGQLSLLLELYL 220 (329)
Q Consensus 151 ~~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l 220 (329)
+ +| .+..+++|+.|++++|.+..+ |.. +..+++|+.|++++|.++++|+. +..+|+|+.|++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~------l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQP------LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGG------GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH------HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 66 788899999999999998877 444 45688999999999988876543 334888888864
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=5.7e-15 Score=115.02 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=86.3
Q ss_pred CCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEe
Q 020238 90 GNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLN 167 (329)
Q Consensus 90 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 167 (329)
++++.|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56677777777666 6666666677777777777664333 4566667777777777666555555555566777777
Q ss_pred ccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch----hhcCCCCccEEEcCCCcCccCCh
Q 020238 168 AEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLSLLLELYLEKNNFERLPE 230 (329)
Q Consensus 168 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~i~~~~~ 230 (329)
+++|.+..++.. ..+..+++|++|++++|.+++++. .+..+++|+.|++++|.+.++|.
T Consensus 102 Ls~N~l~~~~~~----~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTL----EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGG----GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhH----HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 777766655421 014556677777777777666554 56667777777777776665553
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=9.6e-15 Score=111.36 Aligned_cols=125 Identities=22% Similarity=0.217 Sum_probs=93.4
Q ss_pred CCCCCEEEcCCCCCc-ccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc-cChhhhhccccCCC
Q 020238 112 LSGLSALYLDHCKRL-KSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE-VPLSIVRLNNFDGL 189 (329)
Q Consensus 112 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~ 189 (329)
.+++++|++++|.+. ..+|..+..+++|++|++++|..... ..+..+++|+.|++++|.+.. +|.. +..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL------AEKC 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH------HHHC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH------hhhC
Confidence 467778888887765 35666667778888888887655544 567777888888888888776 4332 2446
Q ss_pred CCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCccCCh----hhhcCCccceeccc
Q 020238 190 QNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFERLPE----SIIHLSKLAYLKLS 244 (329)
Q Consensus 190 ~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~~~~~----~l~~~~~L~~L~l~ 244 (329)
++|++|++++|.+++++ ..+..+++|+.|++++|+++.++. .+..+++|+.|+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 78888888888888854 667888888888888888886664 57778888888875
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=3.5e-14 Score=113.07 Aligned_cols=127 Identities=23% Similarity=0.322 Sum_probs=86.8
Q ss_pred cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238 93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT 171 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (329)
+.++++++.+..+|..+. .++++|++++|.+....+. .+..+++|++|++++|.+.+..|..|..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455556666655555432 2677777777665443332 3666777777777776666666667777777777777777
Q ss_pred cccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCc
Q 020238 172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~ 226 (329)
.+..++... +..+++|++|++++|.++++ |..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKM-----FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSS-----STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHH-----hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 777665543 56678888888888888874 556777888888888888776
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=2.1e-15 Score=143.64 Aligned_cols=161 Identities=21% Similarity=0.186 Sum_probs=99.9
Q ss_pred EecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc
Q 020238 96 YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE 175 (329)
Q Consensus 96 ~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 175 (329)
++.++.+...+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+..
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc
Confidence 3334444444556777788888888887754 56666667888888888886655 777778888888888888888887
Q ss_pred cChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcCC-ccceecccccccccccC
Q 020238 176 VPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHLS-KLAYLKLSYCERLQSLP 253 (329)
Q Consensus 176 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~-~L~~L~l~~~~~l~~~~ 253 (329)
+|..+ ..+++|+.|++++|.++.+|..++.+++|+.|+|++|.++ .+|..+.... ....+++++|.....+|
T Consensus 285 lp~~~------~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 285 LPAEL------GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCSSG------GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cChhh------cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 76554 4567888888888888888888888888888888888887 4445554432 22346777766544443
Q ss_pred CCCCCccEEeccCC
Q 020238 254 KLPCNLSELDAHHC 267 (329)
Q Consensus 254 ~~~~~L~~L~l~~c 267 (329)
..|+.|+++++
T Consensus 359 ---~~l~~l~l~~n 369 (727)
T 4b8c_D 359 ---HERRFIEINTD 369 (727)
T ss_dssp ---CC---------
T ss_pred ---cccceeEeecc
Confidence 45667777766
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=2.2e-14 Score=112.58 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=94.1
Q ss_pred hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238 109 IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG 188 (329)
Q Consensus 109 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 188 (329)
+..+.+|++|++++|.+. .++......++|+.|++++|...+. ..+..+++|+.|++++|.+..++..+ +..
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~-----~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL-----DQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH-----HHH
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch-----hhc
Confidence 345566777777776544 3333222233777777777655443 45677778888888888887776544 345
Q ss_pred CCCccEEEcCCCCCCCcch--hhcCCCCccEEEcCCCcCccCChh----hhcCCccceeccccccc
Q 020238 189 LQNLTSLYLTDCGITELPE--NLGQLSLLLELYLEKNNFERLPES----IIHLSKLAYLKLSYCER 248 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~i~~~~~~----l~~~~~L~~L~l~~~~~ 248 (329)
+++|+.|++++|.++++|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7888888888888888776 677888899999999988877764 78888888888888754
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.5e-14 Score=108.19 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=31.7
Q ss_pred ccCcEEeccCCCCC-cccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccc-cchhhhcCCCCCEEEc
Q 020238 43 DKLVNLNLNNCKSL-RILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE-LPSSIECLSGLSALYL 120 (329)
Q Consensus 43 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~l 120 (329)
++|++|++++|.+. +.+|..+..+++|++|++++|.+... +.+..+++|+.|++++|.+.. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444444444433 23333334444444444444432222 223333334444444443332 3333333444444444
Q ss_pred CCCC
Q 020238 121 DHCK 124 (329)
Q Consensus 121 ~~~~ 124 (329)
++|.
T Consensus 96 s~N~ 99 (149)
T 2je0_A 96 SGNK 99 (149)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 4433
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=5.9e-14 Score=121.45 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=48.9
Q ss_pred CCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc-EEEcCCCCCCCcc-hhhcCCC
Q 020238 136 LKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT-SLYLTDCGITELP-ENLGQLS 213 (329)
Q Consensus 136 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~-~~~~~~~ 213 (329)
+++|+.+++.+|.....-+..|.++.+|+.+++..+ +..++... |.++.+|+ .+++.+ .++.++ .++..|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a-----F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV-----FSNCGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT-----TTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH-----hhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence 455555555554333222234555555555555554 44444333 45555555 555555 444433 3344555
Q ss_pred CccEEEcCCCcCccCC-hhhhcCCccceec
Q 020238 214 LLLELYLEKNNFERLP-ESIIHLSKLAYLK 242 (329)
Q Consensus 214 ~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~ 242 (329)
+|+.++++++.++.++ .++.++++|+.++
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555555555555444 3444555555543
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=4.9e-15 Score=141.06 Aligned_cols=179 Identities=19% Similarity=0.170 Sum_probs=112.1
Q ss_pred CCccEEEecCccccccchhhhcCCCCCEEEcCCC----CCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcE
Q 020238 90 GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHC----KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNS 165 (329)
Q Consensus 90 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 165 (329)
+.++.+.+..+.+...+..+.....|+.+.+... +.....+..+..++.|+.|++++|... .+|..+..+++|+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence 4456666666666554444333333333333221 112244566888999999999997765 77877778999999
Q ss_pred EeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccc
Q 020238 166 LNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245 (329)
Q Consensus 166 L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~ 245 (329)
|++++|.+..+|..+ ..+++|+.|+|++|.++.+|..++.+++|+.|+|++|.|+.+|..+..+++|+.|+|++
T Consensus 252 L~Ls~N~l~~lp~~~------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 252 LYLNGNSLTELPAEI------KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CBCTTSCCSCCCGGG------GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred EEeeCCcCcccChhh------hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 999999999888664 56899999999999999999999999999999999999999998899999999999999
Q ss_pred cccccccCCCCC----CccEEeccCCCCCcCCCC
Q 020238 246 CERLQSLPKLPC----NLSELDAHHCTALESSPG 275 (329)
Q Consensus 246 ~~~l~~~~~~~~----~L~~L~l~~c~~l~~~~~ 275 (329)
|+..+.+|..+. .+..+++++|.....+|.
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 886655553331 223356777776555543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=3.5e-13 Score=107.28 Aligned_cols=125 Identities=27% Similarity=0.349 Sum_probs=67.6
Q ss_pred EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238 94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI 173 (329)
Q Consensus 94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 173 (329)
.++++++.+..+|..+ .+++++|++++|.+ +.+|..+..+++|+.|++++|.+....+..|.++++|+.|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444444444444332 23555555555443 23444455555555555555544444444455555666666666665
Q ss_pred cccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238 174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~ 226 (329)
..++... +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~-----f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRT-----FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHH-----hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5554433 4556666666666666666554 3555666777777766654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=7.6e-13 Score=103.82 Aligned_cols=127 Identities=20% Similarity=0.303 Sum_probs=80.8
Q ss_pred cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
+.++++++.+..+|..+ .+++++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 44555555555555432 3567777777766544344445666777777777765554433445667777777777777
Q ss_pred ccccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~ 226 (329)
++.++... +..+++|+.|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGV-----FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHH-----hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 77665544 45567777777777777776654 355777777777777766
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=8.7e-13 Score=104.96 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=94.4
Q ss_pred cEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC
Q 020238 70 KELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS 149 (329)
Q Consensus 70 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 149 (329)
+.++++++.+. .+|.. -.++++.|++++|.+..+|..+..+++|++|++++|.+....+..|.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~-~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCS-SCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC-cCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 45566654432 33321 12567777887777777777788888888888888877666666788888888888888777
Q ss_pred CCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC
Q 020238 150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT 203 (329)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 203 (329)
....+..|..+++|+.|++++|.+..++... +..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGA-----FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTT-----TTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhh-----hhcCccccEEEeCCCCee
Confidence 7666667888888888988888888777654 567888899999888665
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7.4e-14 Score=109.53 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=59.1
Q ss_pred CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238 114 GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT 193 (329)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~ 193 (329)
+|++|++++|.+... ..+..+++|++|++++|......+..+..+++|+.|++++|.+..++.. ..+..+++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL----DPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGG----GGGGGCTTCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhh----HhhhcCCCCC
Confidence 555555555443322 3344555555555555443322112235555666666666665554430 0134566777
Q ss_pred EEEcCCCCCCCcchh----hcCCCCccEEEcCCCcCc
Q 020238 194 SLYLTDCGITELPEN----LGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 194 ~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~~~i~ 226 (329)
.|++++|.++++|.. +..+++|+.|++++|.+.
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777666553 666777777777777654
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=8.1e-13 Score=105.09 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=68.0
Q ss_pred CccEEEecCccccccch--hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238 91 NIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA 168 (329)
Q Consensus 91 ~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 168 (329)
+++.|++++|.+..++. .+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 45555555555554443 2566666677777666655555566666667777777766655555555666677777777
Q ss_pred cCccccccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238 169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE 204 (329)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 204 (329)
++|.+..++... +..+++|++|++++|.+..
T Consensus 110 ~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 110 YDNQISCVMPGS-----FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTS-----STTCTTCCEEECTTCCBCC
T ss_pred CCCcCCeeCHHH-----hhcCCCCCEEEeCCCCccC
Confidence 777766554332 4556777777777776653
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=1.6e-11 Score=108.78 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=168.0
Q ss_pred CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc--ccCCCCCc
Q 020238 15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNI 92 (329)
Q Consensus 15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L 92 (329)
.+..++.+.+-+. +..++.. .|.++ +|+.+.+..+ +...-..+|.+ .+|+.+.+.. . +..++ .+..+.+|
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~-aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKD-AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTT-TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTC
T ss_pred ecCCccEEEECCc--cCEehHh-hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccC
Confidence 4466666666653 3444432 55665 6888888764 33333344555 4688888886 2 22222 46667889
Q ss_pred cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
+.+++..+.+..++...-.+.+|+.+.+.. .....-..+|.++++|+.+++..+ ....-...|.+ .+|+.+.+. +.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 999998888887776554578899998875 344444566888889999998762 22222344655 678888884 44
Q ss_pred ccccChhhhhccccCCCCCccEEEcCCCCCC-----Ccc-hhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccc
Q 020238 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-----ELP-ENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSY 245 (329)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~-~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~ 245 (329)
+..++... |.+|++|+.+++.++.+. .++ ..+..|++|+.+++.. .++.+. .++.+|++|+.+.+..
T Consensus 259 i~~I~~~a-----F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 259 VTNIASRA-----FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CCEECTTT-----TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred ccEEChhH-----hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 55555544 788999999999887665 343 4577899999999984 477665 5777889999999865
Q ss_pred cccccccC----CCCCCccEEeccCCCCCcCCCCCCCCC-CCCcEEEcCC
Q 020238 246 CERLQSLP----KLPCNLSELDAHHCTALESSPGLVFPS-RDPQYFDLRN 290 (329)
Q Consensus 246 ~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~L~~L~i~~ 290 (329)
+ ++.++ ..+ +|+.+.+.++......+..+..+ ..++.|.+..
T Consensus 333 ~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 333 N--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp T--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred c--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 4 55554 234 89999998876433333333333 2566666544
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=4.3e-13 Score=116.01 Aligned_cols=257 Identities=14% Similarity=0.077 Sum_probs=141.6
Q ss_pred CCCceEEEecCCCCcccCCCcccccC-cccCcEEeccCCCCC--cccCccccCCCcccEEeecCCCCCCCCcccCC----
Q 020238 16 NGKLKQIISRASNFFTKSPNHSLTLH-LDKLVNLNLNNCKSL--RILPPGIFRLEFLKELDLWGCSKLKTLPEISS---- 88 (329)
Q Consensus 16 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---- 88 (329)
+++++.|.+++.-...+.. .+.. +++|+.|+|++|.+. .... ..++.++.+.+..+.+.. ..+..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~---~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~~--~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFR---HLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVPA--YAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECHHHHH---HHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEECT--TTTEEEETT
T ss_pred hCceeEEEEeccccHHHHH---HHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccCH--HHhcccccc
Confidence 4567777776642111111 2222 566777777776654 1111 112223334444332111 12344
Q ss_pred ----CCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC---CCC-CCcccCC
Q 020238 89 ----AGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS---LKS-LPNELGN 159 (329)
Q Consensus 89 ----~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~~-~~~~~~~ 159 (329)
+++|+.+++.. .+..++. .|..+++|+.+++..|......+..|.++.++..+....... ... ....|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 67777777776 6665543 466777777777777665555555566666666555543110 011 1122333
Q ss_pred CccCc-EEeccCccccccChhhhh---------------------ccc-cCCCCCccEEEcCCCCCCCcch-hhcCCCCc
Q 020238 160 LEALN-SLNAEGTAIREVPLSIVR---------------------LNN-FDGLQNLTSLYLTDCGITELPE-NLGQLSLL 215 (329)
Q Consensus 160 l~~L~-~L~l~~~~l~~~~~~~~~---------------------~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L 215 (329)
+..|+ .+.+.... .++..+.. ... ...+++|+.+++++|.++.++. .+..|++|
T Consensus 175 ~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 175 GEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp SCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 33343 22221110 00000000 000 1137889999999988888765 47778999
Q ss_pred cEEEcCCCcCccCC-hhhhcCCccc-eecccccccccccC----CCCCCccEEeccCCCCCcCCC-CCCCCCCCCcEEE
Q 020238 216 LELYLEKNNFERLP-ESIIHLSKLA-YLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSP-GLVFPSRDPQYFD 287 (329)
Q Consensus 216 ~~L~l~~~~i~~~~-~~l~~~~~L~-~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~ 287 (329)
+.+++.+| ++.++ .++.++++|+ .+++.+ .++.++ ..+++|+.++++++. ++.++ ..+..+++|+.+.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 99999887 77666 5678888898 898876 455665 345788999887766 44444 4555666777765
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=2.5e-12 Score=100.80 Aligned_cols=129 Identities=22% Similarity=0.299 Sum_probs=100.8
Q ss_pred CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238 114 GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT 193 (329)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~ 193 (329)
..+.+++.++.+ ..+|..+ .++++.|++++|......+..+..+++|+.|++++|.+..++... +..+++|+
T Consensus 8 ~~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-----FDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCC
T ss_pred CCCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH-----ccCCCccC
Confidence 356788887664 4455433 468999999997766554556788899999999999988877655 56788999
Q ss_pred EEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCChh-hhcCCccceeccccccccc
Q 020238 194 SLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPES-IIHLSKLAYLKLSYCERLQ 250 (329)
Q Consensus 194 ~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~-l~~~~~L~~L~l~~~~~l~ 250 (329)
.|++++|.+++++.. +..+++|+.|++++|+++.++.. +..+++|++|++++|+...
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999999999987654 57789999999999999887754 5778899999999887543
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=2.4e-11 Score=107.58 Aligned_cols=244 Identities=11% Similarity=0.092 Sum_probs=169.2
Q ss_pred chhhhh-hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238 5 NIQQLW-DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL 83 (329)
Q Consensus 5 ~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 83 (329)
+++.+. ..|..+ +|+.+.+..+ +..+... .|.++ +|+.+.+.. .+...-..+|.+|++|+.+++.++......
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT--CCEECTT-TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred ccCEehHhhcccC-CccEEEeCCC--ccEECHH-hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEec
Confidence 445553 235555 7999998865 5555543 56665 699999986 434444567888999999999986544322
Q ss_pred cccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCcc
Q 020238 84 PEISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEA 162 (329)
Q Consensus 84 ~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 162 (329)
.......+|+.+.+..+ +..++ ..|..+++|+.+.+.. +....-..+|.+ .+|+.+.+.. .....-...|.++++
T Consensus 197 ~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 197 ASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTT
T ss_pred hhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCC
Confidence 22223588999999854 55444 4578899999999987 333333445666 7899999954 333333467899999
Q ss_pred CcEEeccCcccc-----ccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcC
Q 020238 163 LNSLNAEGTAIR-----EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHL 235 (329)
Q Consensus 163 L~~L~l~~~~l~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~ 235 (329)
|+.+.+.++.+. .++... |.+|++|+.+.+.. .++.++. ++..|++|+.+++..+ ++.+. .++.++
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~a-----F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYC-----LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTT-----TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred CCEEEeCCccccCCcccEECHHH-----hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 999999887665 344444 78899999999984 5777654 5777999999999655 66665 567788
Q ss_pred CccceecccccccccccC-C---CC-CCccEEeccCC
Q 020238 236 SKLAYLKLSYCERLQSLP-K---LP-CNLSELDAHHC 267 (329)
Q Consensus 236 ~~L~~L~l~~~~~l~~~~-~---~~-~~L~~L~l~~c 267 (329)
+|+.+++.++... .++ . .+ ..++.|.+...
T Consensus 346 -~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 346 -GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp -CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGG
T ss_pred -CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHH
Confidence 9999999987533 232 1 12 35677776553
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=4.6e-14 Score=112.92 Aligned_cols=131 Identities=24% Similarity=0.272 Sum_probs=89.3
Q ss_pred ccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhh
Q 020238 102 IEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIV 181 (329)
Q Consensus 102 i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 181 (329)
+..+|..+..+++|++|++++|.+.. +| .+..+++|+.|++++|... .+|..+..+++|+.|++++|.+..++ .
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~-- 110 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-G-- 110 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-H--
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-c--
Confidence 34455567777888888887766443 55 6677777888888776544 55655556677888888888777654 2
Q ss_pred hccccCCCCCccEEEcCCCCCCCcch--hhcCCCCccEEEcCCCcCccC-Ch----------hhhcCCccceec
Q 020238 182 RLNNFDGLQNLTSLYLTDCGITELPE--NLGQLSLLLELYLEKNNFERL-PE----------SIIHLSKLAYLK 242 (329)
Q Consensus 182 ~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~i~~~-~~----------~l~~~~~L~~L~ 242 (329)
+..+++|+.|++++|.+++++. .+..+++|+.|++++|.++.. |. .+..+++|+.|+
T Consensus 111 ----~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 ----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ----HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ----cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 2345778888888888877554 567788888888888877533 21 256677777776
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=2.5e-14 Score=114.54 Aligned_cols=133 Identities=21% Similarity=0.230 Sum_probs=87.2
Q ss_pred hhcCCCCCEEEcCCCCCcccCC------ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhh
Q 020238 109 IECLSGLSALYLDHCKRLKSLP------SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVR 182 (329)
Q Consensus 109 ~~~l~~L~~L~l~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 182 (329)
+.....++.+++..+.+....+ ..+..+++|++|++++|.... +| .+..+++|+.|++++|.+..+|...
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~-- 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLD-- 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHH--
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchh--
Confidence 3344455555555444433333 367777888888888765544 55 6667777888888888777666543
Q ss_pred ccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCCh--hhhcCCccceeccccccccc
Q 020238 183 LNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPE--SIIHLSKLAYLKLSYCERLQ 250 (329)
Q Consensus 183 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~l~~~~~L~~L~l~~~~~l~ 250 (329)
..+++|+.|++++|.++++| .+..+++|+.|++++|+++.++. .+..+++|++|++++|+...
T Consensus 90 ----~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 90 ----AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ----HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ----hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 22467777888887777765 46667777888888777776543 56677777777777765433
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=6.9e-11 Score=92.24 Aligned_cols=106 Identities=22% Similarity=0.353 Sum_probs=69.0
Q ss_pred CEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEE
Q 020238 116 SALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSL 195 (329)
Q Consensus 116 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L 195 (329)
+.++++++.+ +.+|..+. ++|++|++++|.+....|..|..+++|+.|++++|.+..++... +..+++|+.|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~-----~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV-----FDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEE
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH-----hCCcchhhEE
Confidence 4555555443 34444332 56666666666555555556666777777777777777666554 4567778888
Q ss_pred EcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCC
Q 020238 196 YLTDCGITELPEN-LGQLSLLLELYLEKNNFERLP 229 (329)
Q Consensus 196 ~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~ 229 (329)
++++|.+++++.. +..+++|+.|++++|.+...+
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 8888877776654 667788888888888776444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=6.6e-11 Score=91.98 Aligned_cols=104 Identities=22% Similarity=0.359 Sum_probs=64.4
Q ss_pred CCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccE
Q 020238 115 LSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS 194 (329)
Q Consensus 115 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~ 194 (329)
.+.++++++.+ +.+|..+ .+++++|++++|.+.+..+..|.++++|+.|++++|.+..++... +..+++|++
T Consensus 11 ~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-----f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV-----FDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCE
T ss_pred CCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh-----ccCCCCCCE
Confidence 34555555432 3344333 255666666665555544555666666666666666666665544 456677777
Q ss_pred EEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238 195 LYLTDCGITELPE-NLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 195 L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~ 226 (329)
|++++|.+++++. .+..+++|+.|++++|.++
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777777777655 3667777888888877765
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=9.9e-11 Score=91.33 Aligned_cols=106 Identities=19% Similarity=0.313 Sum_probs=63.8
Q ss_pred cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238 93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172 (329)
Q Consensus 93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (329)
+.++++++.+..+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555555555555432 566666666666554445556666666777776655444333345666777777777777
Q ss_pred ccccChhhhhccccCCCCCccEEEcCCCCCCCc
Q 020238 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL 205 (329)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 205 (329)
+..++... +..+++|+.|++++|.+...
T Consensus 93 l~~l~~~~-----~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGA-----FDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTT-----TTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHH-----hccccCCCEEEeCCCCcccc
Confidence 76666543 45567777777777766543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=1.3e-10 Score=90.24 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=70.1
Q ss_pred ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238 92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT 171 (329)
Q Consensus 92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (329)
.+.++++++.+..+|..+ .+++++|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456777777777666544 367777777776665555666667777777777776555444444667777777777777
Q ss_pred cccccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238 172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE 204 (329)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 204 (329)
.+..++... +..+++|+.|++++|.++.
T Consensus 89 ~l~~~~~~~-----~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGA-----FDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTT-----TTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHH-----hcCCCCCCEEEeCCCCCCC
Confidence 777666544 4566777777777776653
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.10 E-value=1.2e-11 Score=108.48 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc-----cCChhhhcCCccceecccccc
Q 020238 189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE-----RLPESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~ 247 (329)
+++|++|++++|.+++ +...+...++|+.|++++|.|+ .+...+..+++|++|++++|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 4445555555554443 2233344445555555555544 122233344455555555443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=1.1e-11 Score=108.66 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=105.1
Q ss_pred CCcccEEeecCCCCCCCC----c-ccCCC-CCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCCcccCCcc----c
Q 020238 66 LEFLKELDLWGCSKLKTL----P-EISSA-GNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKRLKSLPSS----L 133 (329)
Q Consensus 66 l~~L~~L~l~~~~~~~~~----~-~~~~~-~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~ 133 (329)
++.|++|++++|.+.... . .+... .+|+.|++++|.++. +......+++|++|++++|.+....... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456788888887654321 1 11222 578888888887762 2222334567888888888765432222 2
Q ss_pred -cCCCCCcEEeccCCCCCC----CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC----
Q 020238 134 -CKLKSLNSIYLRWCSSLK----SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE---- 204 (329)
Q Consensus 134 -~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---- 204 (329)
...++|++|++++|.+.. .++..+...++|+.|++++|.+.+...... ...+...++|+.|++++|.+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L-~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL-AAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH-HHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH-HHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 246788999998876543 233344667889999999998874321100 0114556789999999999985
Q ss_pred -cchhhcCCCCccEEEcCCCcCc
Q 020238 205 -LPENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 205 -~~~~~~~~~~L~~L~l~~~~i~ 226 (329)
+...+...+.|+.|++++|.|+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 4445667899999999999987
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=2.9e-08 Score=87.75 Aligned_cols=122 Identities=12% Similarity=0.170 Sum_probs=74.1
Q ss_pred ccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhh
Q 020238 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESII 233 (329)
Q Consensus 156 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~ 233 (329)
.|..+..|+.+.+..+. ..+.... +.++++|+.+.+. +.++.++. .+..|.+|+.+++..+ ++.+. .++.
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~a-----F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGA-----FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTT-----TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred eeeecccccEEeccccc-ceecCcc-----cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 46777888888775542 2233222 6678888888885 34666544 4667888888888654 55554 5677
Q ss_pred cCCccceecccccccccccC----CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCC
Q 020238 234 HLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRN 290 (329)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~ 290 (329)
+|.+|+.+.+..+ ++.++ ..+.+|+.+.+.++.... .....+..|+.+.+..
T Consensus 332 ~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 332 GCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred CCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 8888888888543 45554 355788888887754221 2344556677666543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.97 E-value=1.5e-07 Score=83.23 Aligned_cols=267 Identities=9% Similarity=0.107 Sum_probs=150.9
Q ss_pred ccCCC-CceEEEecCCCCcccCCCcccccCcccCcEEeccCCC--CCccc-CccccCCCcccEEeecCCCCCCCCcccCC
Q 020238 13 VQHNG-KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK--SLRIL-PPGIFRLEFLKELDLWGCSKLKTLPEISS 88 (329)
Q Consensus 13 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 88 (329)
|..|. .|+.+.+-.. ++.+... +|.+|.+|+.+.+..+. .++.+ ..+|..+.+|+.+.+..+-..-....+..
T Consensus 59 F~~~~~~L~sI~iP~s--vt~Ig~~-AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT--VTEIGSN-AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECTT--CCEECTT-TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTT
T ss_pred ccCCCCcCEEEEECCC--eeEEhHH-HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhh
Confidence 45554 4888888653 4444442 67888888888887642 23333 34566677777777665311111123445
Q ss_pred CCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238 89 AGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA 168 (329)
Q Consensus 89 ~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 168 (329)
+.+|+.+.+......--...+..+..|+.+.+..+ ....-..+|. ...|+.+.+... ....-...|..+..+.....
T Consensus 136 c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 136 CEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred hcccccccccceeeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecc
Confidence 57777777754322222334556677777776552 2222222232 345666655431 11111122333333333322
Q ss_pred cCcccc-----------------------------ccChhhhhc--cccCCCCCccEEEcCCCCCCCc-chhhcCCCCcc
Q 020238 169 EGTAIR-----------------------------EVPLSIVRL--NNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLL 216 (329)
Q Consensus 169 ~~~~l~-----------------------------~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~ 216 (329)
...... .+|..+..+ ..|.++..|+.+.+.... ..+ ...+..++.|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQ 291 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccc
Confidence 211100 122222111 126778889999887643 333 34577899999
Q ss_pred EEEcCCCcCccCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcCC
Q 020238 217 ELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLRN 290 (329)
Q Consensus 217 ~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~~ 290 (329)
.+.+. +.++.++ .++.+|.+|+.+.+..+ ++.++ ..+.+|+.+.+... ++.+.. ++..|.+|+.+++.+
T Consensus 292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 292 DIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECC
Confidence 99986 4566666 56788999999999753 55555 34578999999643 555554 445678999999987
Q ss_pred C
Q 020238 291 N 291 (329)
Q Consensus 291 ~ 291 (329)
.
T Consensus 367 ~ 367 (394)
T 4gt6_A 367 S 367 (394)
T ss_dssp C
T ss_pred c
Confidence 5
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=4.1e-09 Score=91.62 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=71.8
Q ss_pred EEEecCc-cccccchhhhcCCCCCEEEcCC-CCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238 94 VMYLNGT-AIEELPSSIECLSGLSALYLDH-CKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT 171 (329)
Q Consensus 94 ~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (329)
.++.+++ .+..+|. +..+++|++|++++ |.+....+..|.++++|+.|++++|.+.+..|..|.++++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 6777777 77777788888875 6655444556777778888888877666655666777777777777777
Q ss_pred cccccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238 172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE 204 (329)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 204 (329)
.+..+|... +..++ |+.|++.+|.+..
T Consensus 91 ~l~~~~~~~-----~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKT-----VQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTT-----TCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHH-----cccCC-ceEEEeeCCCccC
Confidence 777766554 33333 7777777776663
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=3.7e-09 Score=91.88 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=82.2
Q ss_pred EEeecCCCCCCCCcccCCCCCccEEEecC-ccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCC
Q 020238 71 ELDLWGCSKLKTLPEISSAGNIEVMYLNG-TAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS 148 (329)
Q Consensus 71 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (329)
.++.++++.+..+|.+..+.+|+.|++++ |.+..++ ..+..+++|++|++++|.+....+..|.++++|+.|++++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 45777753455677766678999999996 9999776 568899999999999998777777788999999999999977
Q ss_pred CCCCCCcccCCCccCcEEeccCccccc
Q 020238 149 SLKSLPNELGNLEALNSLNAEGTAIRE 175 (329)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~l~~~~l~~ 175 (329)
+...-+..+..+. |+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 6654444455554 9999999998874
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.93 E-value=6.9e-08 Score=85.37 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=114.1
Q ss_pred cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCE
Q 020238 38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSA 117 (329)
Q Consensus 38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~ 117 (329)
.+.+|.+|+.+.+.++ ....-..+|.++.+|+.+++..+-..-.-..+..+..|+.+.+..+.. .+.........|+.
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCce-EeehhhcccCCCce
Confidence 5777888888887653 222333456667778877776541111111334445566555543322 12223334456777
Q ss_pred EEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEc
Q 020238 118 LYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYL 197 (329)
Q Consensus 118 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 197 (329)
+.+.. .........+..+..++.+.+..+ ........|..+..++.+......+. ... +..+.+|+.+.+
T Consensus 235 i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~-----F~~~~~L~~i~l 304 (394)
T 4fs7_A 235 IIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP---EKT-----FYGCSSLTEVKL 304 (394)
T ss_dssp EEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC---TTT-----TTTCTTCCEEEE
T ss_pred EEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec---ccc-----cccccccccccc
Confidence 66654 222222344556677777776542 22222344566666666655443322 111 455667777776
Q ss_pred CCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccC
Q 020238 198 TDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHH 266 (329)
Q Consensus 198 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~ 266 (329)
..+ ++.+.. ++..|.+|+.+++..+ ++.+. .++.+|.+|+.+.+..+ ++.++ ..+.+|+.+.+..
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 543 444432 4556777777777533 55444 45666777777777543 44444 2345666666654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=6e-07 Score=79.30 Aligned_cols=265 Identities=13% Similarity=-0.003 Sum_probs=133.5
Q ss_pred hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCC
Q 020238 12 SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGN 91 (329)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 91 (329)
.|..|.+|+.+.+..+ +..+... +|.+|.+|+.+++..+ ....-..+|.++..|+.+.+..+-..-....+....
T Consensus 66 AF~~c~~L~~i~lp~~--i~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~- 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST--VREIGEF-AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD- 140 (394)
T ss_dssp TTTTCTTEEEEECCTT--CCEECTT-TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC-
T ss_pred HhhCCCCceEEEeCCC--ccCcchh-HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccc-
Confidence 3667888888888643 4555443 6778888888888653 222223456667777776665431110111122221
Q ss_pred ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238 92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT 171 (329)
Q Consensus 92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (329)
+....+.......-...|..+.+|+.+.+..+ ........|.++.+|+.+.+..+ ....-...|..+..|+.+.+..+
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 12221111111111234566677777776542 22223344566666666666542 11111233445555554444332
Q ss_pred ccc--------------ccChhhhhc--cccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcC
Q 020238 172 AIR--------------EVPLSIVRL--NNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHL 235 (329)
Q Consensus 172 ~l~--------------~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~ 235 (329)
... .+|.....+ ..+..+..++.+.+..+...--...+..+..++.+......+. ...+..+
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~ 296 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGC 296 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTC
T ss_pred ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--ccccccc
Confidence 111 001100000 0144566666666655422212234555666666666544322 1356678
Q ss_pred CccceecccccccccccC----CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcC
Q 020238 236 SKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLR 289 (329)
Q Consensus 236 ~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~ 289 (329)
.+|+.+.+..+ ++.++ ..+.+|+.+.+.+. ++.++. ++..|.+|+.+++.
T Consensus 297 ~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 297 SSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEEC
Confidence 88888888643 45554 34578999888643 555543 44456778887774
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=6.3e-09 Score=90.53 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=19.4
Q ss_pred CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc
Q 020238 189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~ 226 (329)
+++|++|+++.|.+++ ++..+..+++|+.|++++|.|+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4555666665555554 2222233455666666555554
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.74 E-value=3.5e-09 Score=81.50 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=53.3
Q ss_pred CccEEEcCCCcCc-cCChhhhcCCccceecccccccccccC-----CC---CCCccEEeccCCCCCcCCC-CCCCCCCCC
Q 020238 214 LLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLP-----KL---PCNLSELDAHHCTALESSP-GLVFPSRDP 283 (329)
Q Consensus 214 ~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~-----~~---~~~L~~L~l~~c~~l~~~~-~~~~~~~~L 283 (329)
.|+.|++++|.|+ .-...+..+++|++|+|++|..+++-. .. .++|++|++++|+.+++-. ..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4666666666655 222344566666666666666554422 21 2367777777777665421 223456889
Q ss_pred cEEEcCCCcccchhHH
Q 020238 284 QYFDLRNNLKLDRNEI 299 (329)
Q Consensus 284 ~~L~i~~~~~l~~~~~ 299 (329)
++|++++|+++++...
T Consensus 142 ~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEK 157 (176)
T ss_dssp CEEEEESCTTCCCHHH
T ss_pred CEEECCCCCCCCchHH
Confidence 9999999999988754
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.73 E-value=1.6e-06 Score=76.10 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=44.4
Q ss_pred cCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhc
Q 020238 157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIH 234 (329)
Q Consensus 157 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~ 234 (329)
+..+..|+.+.+..+ +..+.... +.++.+|+.+.+..+ +..++. .+..|++|+.+.+.++.++.+. .++.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~a-----F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFL-----LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTT-----TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred ccCCccceEEEcCCC-ccEeCccc-----cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 445555555555433 33332222 455666666666432 444332 3555677777777666666554 45666
Q ss_pred CCccceeccc
Q 020238 235 LSKLAYLKLS 244 (329)
Q Consensus 235 ~~~L~~L~l~ 244 (329)
|.+|+.+.+.
T Consensus 309 c~~L~~i~lp 318 (379)
T 4h09_A 309 CVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEEcC
Confidence 6777777664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.1e-08 Score=89.12 Aligned_cols=202 Identities=12% Similarity=0.148 Sum_probs=124.1
Q ss_pred CCCceEEEecCCCCcc-cCC------CcccccCcccCcEEeccCCCCC---------cccCccccCCCcccEEeecCCCC
Q 020238 16 NGKLKQIISRASNFFT-KSP------NHSLTLHLDKLVNLNLNNCKSL---------RILPPGIFRLEFLKELDLWGCSK 79 (329)
Q Consensus 16 ~~~L~~L~l~~~~~~~-~~~------~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~ 79 (329)
...++.|.+.... .. ... ...+...+++|+.|.+.+.... ..+...+..+|+|++|+++++..
T Consensus 106 ~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 3457788887654 22 111 0113567889999998764321 12334456689999999998732
Q ss_pred CCCCcccCCCCCccEEEecCcccc-ccchhhh--cCCCCCEEEcCCC--CC-----cccCCccc--cCCCCCcEEeccCC
Q 020238 80 LKTLPEISSAGNIEVMYLNGTAIE-ELPSSIE--CLSGLSALYLDHC--KR-----LKSLPSSL--CKLKSLNSIYLRWC 147 (329)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~--~l~~L~~L~l~~~--~~-----~~~~~~~~--~~l~~L~~L~l~~~ 147 (329)
. .++.+ ..++|+.|.+..+.+. .....+. .+|+|++|+++.+ .. ...+...+ ..+++|+.|++.+|
T Consensus 185 l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 L-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp C-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred c-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2 33333 3689999999988876 2222333 6899999998632 11 11122222 24789999999987
Q ss_pred CCCCCCCccc---CCCccCcEEeccCccccccCh-hhhhccccCCCCCccEEEcCCCCCCC-cchhhcC-CCCccEEEcC
Q 020238 148 SSLKSLPNEL---GNLEALNSLNAEGTAIREVPL-SIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQ-LSLLLELYLE 221 (329)
Q Consensus 148 ~~~~~~~~~~---~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~-~~~L~~L~l~ 221 (329)
......+..+ ..+++|+.|+++.|.+..... .+. ..+..+++|+.|++++|.+++ ....+.. + ...++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~--~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~ 338 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL--DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVS 338 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH--TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECC
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH--hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEec
Confidence 7654322221 356899999999998875321 111 112457899999999998886 2222222 2 3567777
Q ss_pred CCc
Q 020238 222 KNN 224 (329)
Q Consensus 222 ~~~ 224 (329)
.++
T Consensus 339 ~~~ 341 (362)
T 2ra8_A 339 DSQ 341 (362)
T ss_dssp SBC
T ss_pred CCc
Confidence 665
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=4.5e-08 Score=75.31 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=36.1
Q ss_pred CccEEEcCCCCCCC-cchhhcCCCCccEEEcCCC-cCc-cCChhhhc----CCccceecccccccccccC----CCCCCc
Q 020238 191 NLTSLYLTDCGITE-LPENLGQLSLLLELYLEKN-NFE-RLPESIIH----LSKLAYLKLSYCERLQSLP----KLPCNL 259 (329)
Q Consensus 191 ~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~-~i~-~~~~~l~~----~~~L~~L~l~~~~~l~~~~----~~~~~L 259 (329)
.|++||+++|.+++ -...+..+++|+.|++++| .|+ .--..+.. +++|++|++++|..+++-. ..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554443 1122344555555555555 243 11122332 1345555555555443321 123555
Q ss_pred cEEeccCCCCCc
Q 020238 260 SELDAHHCTALE 271 (329)
Q Consensus 260 ~~L~l~~c~~l~ 271 (329)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 555555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=1.1e-07 Score=74.68 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEc--CCCcCc-----cCChhhhcCCccceeccccc
Q 020238 189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYL--EKNNFE-----RLPESIIHLSKLAYLKLSYC 246 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l--~~~~i~-----~~~~~l~~~~~L~~L~l~~~ 246 (329)
.++|++|++++|.+++ +...+...+.|++|++ ++|.|+ .+.+.+...+.|++|++++|
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3445555555555553 2333444455555555 445554 12233444445555555544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.39 E-value=2.8e-05 Score=68.08 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=90.6
Q ss_pred hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238 109 IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG 188 (329)
Q Consensus 109 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 188 (329)
+..+.+++.+.+.. .........+.++..|+.+.+..+ ....-...|..+.+|+.+.+..+ +..++... |.+
T Consensus 213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a-----F~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLL-----CSG 284 (379)
T ss_dssp TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTT-----TTT
T ss_pred cccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccc-----ccc
Confidence 44556677766654 223333445677888988888652 22222346788889999988653 55555444 788
Q ss_pred CCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccc
Q 020238 189 LQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSY 245 (329)
Q Consensus 189 ~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~ 245 (329)
|.+|+.+.+.++.++.++. ++..|.+|+.+.+..+ ++.+. .++.+|++|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 9999999999988888754 6778999999999754 66665 5788899999998854
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1e-07 Score=74.88 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCccEEEecCcccc-----ccchhhhcCCCCCEEEc--CCCCCccc----CCccccCCCCCcEEeccCCC
Q 020238 90 GNIEVMYLNGTAIE-----ELPSSIECLSGLSALYL--DHCKRLKS----LPSSLCKLKSLNSIYLRWCS 148 (329)
Q Consensus 90 ~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~~ 148 (329)
++|++|++++|.+. .+...+...+.|++|++ ++|.+... +...+...++|++|++++|.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 34444444444444 12334444555666666 44444322 22233344556666665543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=1.1e-05 Score=66.75 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=43.7
Q ss_pred CCCCccEEEcCCCCCCCcc---hhhcCCCCccEEEcCCCcCccCChhhhcCC--ccceeccccccccccc
Q 020238 188 GLQNLTSLYLTDCGITELP---ENLGQLSLLLELYLEKNNFERLPESIIHLS--KLAYLKLSYCERLQSL 252 (329)
Q Consensus 188 ~~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~--~L~~L~l~~~~~l~~~ 252 (329)
.+++|+.|++++|.+++++ ..+..+++|+.|+|++|+|+.+. .+..+. +|++|++++|+.-..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence 4678888888888777643 45567888888888888887552 233333 7777777777654433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=3.1e-05 Score=64.00 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=53.6
Q ss_pred CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCC--CccEEEcCCCcCc-cCC------
Q 020238 159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLS--LLLELYLEKNNFE-RLP------ 229 (329)
Q Consensus 159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~i~-~~~------ 229 (329)
++++|+.|++++|.+..++..... +..+++|+.|+|++|.++++. .+..+. .|+.|++++|.+. .+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~---~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI---VQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH---HHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhH---HhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 466788888888877765421100 245788888888888888762 233333 8888899888886 344
Q ss_pred -hhhhcCCccceecc
Q 020238 230 -ESIIHLSKLAYLKL 243 (329)
Q Consensus 230 -~~l~~~~~L~~L~l 243 (329)
..+..+|+|+.||=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23566778877763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00034 Score=54.72 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=6.0
Q ss_pred CCccEEEcCCCCCC
Q 020238 190 QNLTSLYLTDCGIT 203 (329)
Q Consensus 190 ~~L~~L~l~~~~l~ 203 (329)
+.|++|+|++|.++
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 33444444444444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00028 Score=55.18 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=20.4
Q ss_pred CCCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc
Q 020238 188 GLQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 188 ~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~ 226 (329)
..+.|+.|+|++|.+.+ +...+..-+.|+.|+|++|.|+
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455555555555553 3333444555556666555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.46 E-value=0.0057 Score=44.44 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=33.7
Q ss_pred EEeccCcccc--ccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238 165 SLNAEGTAIR--EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE 226 (329)
Q Consensus 165 ~L~l~~~~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~ 226 (329)
.++.++++++ .+|..+ .++++.|+|++|.++.++.. +..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666666 665433 34577777777777776543 455667777777776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.0081 Score=43.63 Aligned_cols=52 Identities=27% Similarity=0.210 Sum_probs=24.7
Q ss_pred EEEcCCCCCC--CcchhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccc
Q 020238 194 SLYLTDCGIT--ELPENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCE 247 (329)
Q Consensus 194 ~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~ 247 (329)
.++-+++.++ .+|.. -.++|+.|+|++|+|+.++ ..+..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444444 44432 1234555555555555554 233445555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.10 E-value=22 Score=23.83 Aligned_cols=38 Identities=13% Similarity=-0.019 Sum_probs=20.9
Q ss_pred cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecC
Q 020238 38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWG 76 (329)
Q Consensus 38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (329)
.|.+|..|+.+.|-. .....-..+|.+|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 566666666666654 22222233455666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.14 E-value=42 Score=22.39 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=5.0
Q ss_pred ccCCCCCcEEec
Q 020238 133 LCKLKSLNSIYL 144 (329)
Q Consensus 133 ~~~l~~L~~L~l 144 (329)
|.++.+|+.+.+
T Consensus 39 F~~C~~L~~i~~ 50 (100)
T 2lz0_A 39 FSGCTALEKLIL 50 (100)
T ss_dssp STTCTTCCCEEE
T ss_pred HhccCCccEEEE
Confidence 334444444444
Done!