BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020239
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
+EL R AA +G+ ++K LI GAD+N +D DGR+PLH A G++++ LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N KD G TPL A + GH V LL+
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLI------------------------------- 90
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
S G D N++D D RTPLH AA G + KLL+ GA V T D G TPLD R GN+
Sbjct: 91 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 294 LIKLLE 299
++KLLE
Sbjct: 151 VVKLLE 156
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+ AA +G +K LI GAD+N D DGR+PLH A G++++ LI KG D+N D
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASL 208
G TPL A + G++ V LL K+G L
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
+EL R AA +G+ ++K L+ GAD N +D DGR+PLH A G+++I L+ KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D N KD G TPL A + GH + LL L
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLL-------------------------------L 90
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
S G DPN++D D RTPLH AA G + KLLL GA T D G TPLD R GN+
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 294 LIKLLE 299
++KLLE
Sbjct: 151 IVKLLE 156
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA +G +K L+ GAD N D DGR+PLH A G+++I L+ KG D N D G
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASL 208
TPL A + G++ + LL K+G L
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
+EL R AA +G+ ++K LI GAD+N +D DGR+PLH A G+++I LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKR 231
D+N KD G TPL A K GH + LL+ +GA +N D+ + L A G +++K
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
++S G D N+ D D RTPL +A G + KLL + G
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 214
A G +D LI+ G D+N D G TPL A K GH + LL+ +GA +N D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 215 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
+ L A G +++K ++S G D N++D D RTPLH AA EG + KLL+ GA V
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
T D G TPLD R GN+ ++KLLE
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 48/85 (56%)
Query: 214 GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
G L A G+ D +K ++ NG D N+ D D RTPLH AA EG + KLL+ GA V
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLL 298
KD G TPL G+K ++KLL
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLL 89
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 50/86 (58%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G +K LI GAD+N D DGR+PLH A G+++I LI KG D+N D G
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASL 208
TPL A + G++ + LL K+G L
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
+EL R AA +G+ ++K L+ GAD+N +D DG++PLHLA G++++ L+ +G
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKR 231
D N KD G TPL A + GH V LL+ +GA N D+ + L +A G +++K
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
+LS G DPN+ D D RTPL +A G + KLL + G
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 214
A G +D L++ G D+N D G TPL A + GH V LL+ +GA N D+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 215 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
+ L +A G +++K +LS G DPN++D D +TPLH+AA G + KLLL GA
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
T D G TPLD R GN+ ++KLLE
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 47/85 (55%)
Query: 214 GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
G L A G+ D +K +L NG D N+ D D +TPLH+AA G + KLLL GA
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLL 298
KD G TPL G+K ++KLL
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLL 89
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA +G +K L+ GAD N D DG++PLHLA G++++ L+ +G D N D G
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASL 208
TPL A + G++ V LL K+G L
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
+L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
+N KDK G TPL A + GH + +L+K GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
D N++D D TPLH+AA EG + ++LL+AGA V +D++G TP D GN+++
Sbjct: 93 ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 295 IKLLEDA 301
++L+ A
Sbjct: 150 AEVLQKA 156
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
+L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
+N KDK G TPL A + GH + +L+K GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
D N++D D TPLH+AA EG + ++LL+AGA V +D++G TP D G++++
Sbjct: 93 ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 295 IKLLEDA 301
++L+ A
Sbjct: 150 AEVLQKA 156
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
+GR+PLHLA G+ ++ L++ G D+N KDK G TPL A + GH V LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 208 LNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
+N D + L +A G +++K +L G D N++D + RTPLH+AA G + KLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 266 LEAGA 270
LEAGA
Sbjct: 121 LEAGA 125
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDP 239
G TPL A + GH V LL++ GA +N D + L +A G +++K +L G D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
N++D + RTPLH+AA G + KLLLEAGA V KD+ G TPL G+ ++KLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 300 DA 301
+A
Sbjct: 122 EA 123
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA +G L +K L+ AGAD+N D +GR+PLHLA G+ ++ L++ G D+N KDK G
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA 206
TPL A + GH V LL++ GA
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N KDK G TPL A + GH + +L+K GA
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
D N++D D TPLH+AA EG + ++LL+AGA V +D++G T D GN++
Sbjct: 105 ----DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 288
++D+ T +H AA++G M +LL AS +D GNTPL DE R+
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 38/147 (25%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-------- 174
AA G +K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 80 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 139
Query: 175 -------------------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGAS 207
NI+D GNTPL + C + V LLV +GAS
Sbjct: 140 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL--HLACDEERVEEAKLLVSQGAS 197
Query: 208 LNVDDAGSFLCIAVARGDSDL-LKRVL 233
+ +++ + VA+G L LKR++
Sbjct: 198 IYIENKEEKTPLQVAKGGLGLILKRMV 224
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 286
+L + +L++ D D RT LH A S G + + LL+ G V KD G +PL
Sbjct: 21 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 287 RMCGNKNLIKLL 298
G ++K L
Sbjct: 81 ASAGRDEIVKAL 92
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 288
++D+ T +H AA++G M +LL AS +D GNTPL DE R+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 186
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 38/138 (27%)
Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD----------------- 174
+K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 149
Query: 175 ----------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGASLNVDDAGSF 216
NI+D GNTPL + C + V LLV +GAS+ +++
Sbjct: 150 KGNLKMIHILLYYKASTNIQDTEGNTPL--HLACDEERVEEAKLLVSQGASIYIENKEEK 207
Query: 217 LCIAVARGDSDL-LKRVL 233
+ VA+G L LKR++
Sbjct: 208 TPLQVAKGGLGLILKRMV 225
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 286
+L + +L++ D D RT LH A S G + + LL+ G V KD G +PL
Sbjct: 22 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 81
Query: 287 RMCGNKNLIKLL 298
G ++K L
Sbjct: 82 ASAGRDEIVKAL 93
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N TD+ G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N D +G TPL A GH + +L+K GA
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
D N++DY+ TPLH+AA +G + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA +G L ++ L++ GAD+N DY+G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 295
++D+ T +H AA++G M +LL AS +D GNTPL DE R+ K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 37/149 (24%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-------- 174
AA G +K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 80 AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 175 -------------------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGAS 207
NI+D GNTPL + C + V LV +GAS
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL--HLACDEERVEEAKFLVTQGAS 197
Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
+ +++ + VA+G L+ + L+ G
Sbjct: 198 IYIENKEEKTPLQVAKGGLGLILKRLAEG 226
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 216 FLCIAVARGDSDLLK-RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274
+C G D LK R+L++ D D RT LH A S G + + LL+ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 275 KDRWGNTPLDEGRMCGNKNLIKLL 298
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKAL 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N TD DG +PLHLA S G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N D G TPL A GH + +L+K GA
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
D N+ D D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 295
++D+ T +H AA++G M +LL AS +D GNTPL DE R+ K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 37/149 (24%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-------- 174
AA G +K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 175 -------------------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGAS 207
NI+D GNTPL + C + V LV +GAS
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL--HLACDEERVEEAKFLVTQGAS 197
Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
+ +++ + VA+G L+ + L+ G
Sbjct: 198 IYIENKEEKTPLQVAKGGLGLILKRLAEG 226
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 216 FLCIAVARGDSDLLK-RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274
+C G D LK R+L++ D D RT LH A S G + + LL+ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 275 KDRWGNTPLDEGRMCGNKNLIKLL 298
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKAL 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G++PLHLA +G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N DK G+TPL A GH + +L+K GA +N D F
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA +G L ++ L++ GAD+N TD G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D+ G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKR 231
D+N KD G TPL A + GH + +L+K GA +N D+ F L +A RG ++++
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
+L NG D N++D +T ++ G +A++L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
A G +D L+ G D+N +D G TPL A GH + +L+K GA +N D+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
L +A RG ++++ +L NG D N+ D TPLH+AA G + ++LL+ GA V
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N +D G +PLHLA RG+ +I L++ G D+N +DKFG
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+RD+ TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIK-LLEDAKCTQLSEFH 310
V KD G TPL G+ +++ LL++ S+ H
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
A G +D L+ G D+N D G TPL A GH + +L+K GA +N DD+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
L +A RG ++++ +L NG D N+ D++ TPLH+AA+ G + ++LL+ GA V
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N D++G +PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D++ D FG TPL A GH + +L+K
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLK------------------------------ 101
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
NG D N+ D D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 102 -NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AAY G L ++ L++ GAD+N D DG +PLHLA GY +I L++ G D+N +DKFG
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
A G +D L+ G D+N D FG TPL + GH + +L+K A +N D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
+ L +A RG ++++ +L G D N+ DY TPLH+AA +G + ++LL+ GA V
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AAY G L ++ L++ GAD+N DY G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG 214
A G +D L+ G D+N +D +G+TPL A + GH + +L+K GA +N +D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 215 SF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
S L +A RG ++++ +L G D N+ D TPLH+AA G + ++LL+ GA V
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N D+ G +PLHLA RG+ +I L++ G D+N D G
Sbjct: 54 AARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
+TPL A GH + +L+K GA +N D + I++ G+ DL
Sbjct: 114 STPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N +D + L +A G ++++ +L NG D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
+ TPLH+AA G + ++LL+ GA V D G+TPL G+ ++++L
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N D G+TPL A GH + +L+K
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------------------------------ 101
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
NG D N++D + TPLH+AA+ G + ++LL+ GA V +D++G T D GN++
Sbjct: 102 -NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA+ G L ++ L++ GAD+N D +G +PLHLA +RG+ +I L++ G D+N +DKFG
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISINNGNEDLAEILQK 167
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 181
AA + L +K LI+AGA ++ D +G + LHLA +G+ ++ +L+ G +D+N +D
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 239
G TP++ A + H + LL+ +G+ +N+ D +C+ A G D+ + +L+ D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
++ + +PLH+AA E Y L L + V K++ G TPL
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 150 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 209
RSPLH A G+ DI L+Q G +I+ + TPL+EA + H L+K GA ++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 210 VDDAGSFLC--IAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
DA C +A +G ++++ +LSNG +D N +D TP+ A + KLLL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 267 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303
G+ + +D N L G ++ ++L AKC
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 5/182 (2%)
Query: 105 ITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDI 164
+ F + L + A H D+ + L++AGA+++ D R+PL A + +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHM--LVQAGANIDTCSEDQRTPLMEAAENNHLEA 59
Query: 165 TLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVDDAGSF--LCIAV 221
+LI+ G ++ KD G+T L A K GH V L+ G +N D G + + A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
DL+K +LS G D N RD + LH AA G +A++LL A + + G++
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS 179
Query: 282 PL 283
PL
Sbjct: 180 PL 181
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 89 VLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYD 148
+L K S++ ++ E +I H AA+ G + + L+ A DL+ +
Sbjct: 130 LLSKGSDINIRDNEENICLHW-------------AAFSGCVDIAEILLAAKCDLHAVNIH 176
Query: 149 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 186
G SPLH+A D + + + D+ +K+K G TPL
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N TD G +PLHLA + G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N D G+TPL A GH + +L+K GA +N D GD
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD---------TWGD-------- 114
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ LI GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D++ D +G TPL A GH + +L+K GA
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
D N+ D TPLH+AA EG + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIK 296
L K
Sbjct: 161 LAK 163
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V D +G TPL M G+ ++++L
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVL 99
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 166
+G +E + AA GD+ +K L + +N D +GR +PLH A +
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 62 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 111
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 112 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 228 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 287
+++ +L +G D +++D PLH A S G Y +A+LL++ GA V D W TPL E
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 288 MCGNKNLIKLL 298
G + KLL
Sbjct: 119 AKGKYEICKLL 129
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N TD G +PLHLA + G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N D G+TPL A GH + +L+K GA +N D GD
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD---------TWGD-------- 114
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 166
+G EA+ L AA GD+ +K L + +N D +GR +PLH A +
Sbjct: 3 MGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 109
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 110 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 228 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 287
+++ +L +G D +++D PLH A S G Y +A+LL++ GA V D W TPL E
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 288 MCGNKNLIKLL 298
G + KLL
Sbjct: 117 AKGKYEICKLL 127
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 166
+G EA+ L AA GD+ +K L + +N D +GR +PLH A +
Sbjct: 7 LGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 175 INIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGASLNVDD----AGSFLCIAVARGDSDLL 229
I++ + + LLEA K G + V L + S+N D + L A ++
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 230 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
+ +L +G D +++D PLH A S G Y +A+LL++ GA V D W TPL E
Sbjct: 63 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 122
Query: 290 GNKNLIKLL 298
G + KLL
Sbjct: 123 GKYEICKLL 131
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
D+N D G TPL A GH + +L+K
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLK------------------------------ 101
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
NG D N+ D + TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 102 -NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
L ++L+
Sbjct: 161 LAEILQ 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N D +G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
+L + AA G +++ L+ GAD N D+ GR+PLH+A + G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
+N D G TPL A GH + +L+K GA +N DA
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI------------------ 102
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
TPL++AA G + ++LL+ GA V +D++G T D GN++L
Sbjct: 103 -------------TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 295 IKLLE 299
++L+
Sbjct: 150 AEILQ 154
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
A G +D L+ G D+N D G+TPL A GH + +L+K GA +N D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
+ L +A G ++++ +L G D N++D TPLH+AA G + ++LL+ GA V
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKR 231
D+N +D G TPL A GH + +L+K GA +N DA L +A RG ++++
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
+L +G D N++D +T ++ G +A++L
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL 168
+ H+ + + + AA+ G ++ L++ GAD+N D DG +PLHLA G+ +I L
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 169 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDS 226
++ G D+N +D +G TPL A GH + +L+K GA +N D + I++ G+
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 227 DL 228
DL
Sbjct: 160 DL 161
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N DD GS L +A G ++++ +L +G D N+RD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
D TPLH+AA G + ++LL+ GA V +D +G TPL G+ ++++L
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA +G L ++ L++ GAD+N D G +PLHLA RG+ +I L++ G D+N +DKFG
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
A++ G L +K L++ GA N ++ +PLH+A G+ ++ +L+Q +N K K
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPN 240
TPL A + GH + LL++ A+ N+ + L IA G + + +L
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
TPLHVAA G +A+LLLE A + G TPL N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G +K L+ A+ N G +PLH+A G+ + L L++K K G
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
TPL A K G V LL++ A N L +AV + D++K +L G P+
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
S ++ TPLH+AA + +A+ LL+ G S + G TPL G+ ++ LL
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 301 AKC-------TQLSEFHYCSQ-GMIGIAENLL 324
+ + L+ H +Q G + +A+ L+
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA + + L++ G N G +PLHLA G+ ++ L+ K + N+ +K G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR--GDSDLLKRVLSNGVDPN 240
TPL + GH V +L+K G ++ + + VA G+ L+K +L + D N
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 290
++ +PLH AA +G + LLL+ GAS G TPL + G
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
+PLH+A+ G+ I L+Q+G N+ + TPL A + GH V L++ A +N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 211 ---DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
DD C A G ++++K +L N +PN TPLH+AA EG LLE
Sbjct: 76 KAKDDQTPLHC-AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 268 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
AS + G TPL G + +LL
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
A +H +L +K L+ G + ++G +PLH+A + ++ L+Q G N + G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
TPL A + GH + +LL+ + A+ N+ + L + G + ++ +GV +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
+ TPLHVA+ G + K LL+ A V K + G +PL + G+ +++ LL
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 184 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNS 241
TPL A GH + L++ GAS NV + + L +A G +++ K +L N N+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
+ D +TPLH AA G M KLLLE A+ G+TPL G+ + L +
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 302 KCTQ-------LSEFHYCSQ-GMIGIAENLL 324
+ +Q + H ++ G + +AE LL
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLL 166
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
A+++G++ +K L++ AD+N G SPLH A +G+ DI L++ G N G
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIA 220
TPL A + G+ VT +L V D SF+ ++
Sbjct: 378 TTPLAIAKRLGYISVTDVLKV------VTDETSFVLVS 409
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 66 FLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIG---------KHEAEL 116
P ++ ++G+V + HGV+ ++ R+ + H G +H+A++
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 117 ALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDIT 165
+ + AA G + L++ GA N+ DG +PL +A GY +T
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 393
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N +DDAG + L +A RG ++++ +L +G D N+RD
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + A G +++ L+ GAD+N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N +D +G TPL A GH + +L++ GA +N D + I++ G+ DL
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V +D WG TPL G+ ++++L
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA +G L +K L+ AGAD+N D +GR+PLHLA G+ ++ L++ G D+N KDK G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA 206
TPL A + GH V LL++ GA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 31/123 (25%)
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
+GR+PLHLA G+ ++ L++ G D+N KDK G TPL A + GH V LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
D N++D + RTPLH+AA G + KLLLE
Sbjct: 60 ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 268 AGA 270
AGA
Sbjct: 90 AGA 92
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
L +A G +++K +L G D N++D + RTPLH+AA G + KLLLEAGA V KD
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 277 RWGNTPLDEGRMCGNKNLIKLLEDA 301
+ G TPL G+ ++KLL +A
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 247 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
RTPLH+AA G + KLLLEAGA V KD+ G TPL G+ ++KLL +A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
+L + AA G +++ L+ GAD+N TD +G +PLHLA + G +I L++ G D
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRV 232
+N D G TPL A GH + +L+K GA +N D + L +A G ++++ +
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
L +G D N++D T ++ ++G +A++L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA G D +L+ GA +N DD G + L +A A G ++++ +L NG D N+ D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
TPLH+AA +G + ++LL+ GA V DR G TPL + G ++++L
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A A G D ++ +++NG D N+ D + TPLH+AA+ G + ++LL+ GA
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V D G TPL G+ ++++L
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVL 91
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
++AA +G ++K L+ GAD+N DG +PLHLA G+ +I L+ KG D+N +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
K GNTP A K GH + LL +GA +N GS
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 32/134 (23%)
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
DG +PLH A G+ + L+ KG D+N + K GNTPL A K GH
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH------------- 54
Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
++++K +L+ G D N+R D TP H+A G + + KLL
Sbjct: 55 ------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 268 AGASVFTKDRWGNT 281
GA V + WG++
Sbjct: 97 KGADVNARS-WGSS 109
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D + L A G ++ +K++LS G D N+R D TPLH+AA G + KLLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 314
V + + GNTP + G+ ++KLL DAK ++ + S
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL-DAKGADVNARSWGSS 109
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N +DDAG + L +A RG ++++ +L +G D N+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + A G +++ L+ GAD+N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N D +G TPL A GH + +L++ GA +N D + I++ G+ DL
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N +D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V D WG TPL G+ ++++L
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N +DDAG + L +A RG ++++ +L +G D N+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + A G +++ L+ GAD+N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N D +G TPL A GH + +L++ GA +N D + I++ G+ DL
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N +D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V D WG TPL G+ ++++L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 42 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++ + +
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Query: 310 H 310
H
Sbjct: 222 H 222
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
N D T LH+AA AK LLEA A +D G TPL + + ++L
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 300 DAKCTQL 306
+ T L
Sbjct: 79 RNRATDL 85
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 96 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 131
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 75 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 134
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 135 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 194
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++ + +
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Query: 310 H 310
H
Sbjct: 255 H 255
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKR 231
G+D+N++ G TPL+ A C G+ + G S +DA + + + +G S
Sbjct: 1 GMDVNVRGPDGFTPLMIA-SCSGGGLET-----GNSEEEEDAPAVISDFIYQGAS----- 49
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
L N D T LH+AA AK LLEA A +D G TPL
Sbjct: 50 -LHNQTDRTGE-----TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 103
Query: 292 KNLIKLLEDAKCTQL 306
+ + ++L + T L
Sbjct: 104 QGVFQILIRNRATDL 118
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 96 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 164
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N +D FG TPL A GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N +D + L +A G ++++ +L G D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
TPLH+AA G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N D G +PLHLA RG+ +I L++ G D+N +DKFG
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+ D D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V +D +G TPL + G+ ++++L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVL 99
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 74 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
L +AA EG Y AK+LL+ A+ D P D + + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRV 232
+D+N++ G TPL+ A C G+ + G S +DA + + + +G S
Sbjct: 1 MDVNVRGPDGFTPLMIA-SCSGGGLET-----GNSEEEEDAPAVISDFIYQGAS------ 48
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
L N D T LH+AA AK LLEA A +D G TPL +
Sbjct: 49 LHNQTDRTGE-----TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 293 NLIKLLEDAKCTQL 306
+ ++L + T L
Sbjct: 104 GVFQILIRNRATDL 117
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 96 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 163
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 74 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
L +AA EG Y AK+LL+ A+ D P D + + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRV 232
+D+N++ G TPL+ A C G+ + G S +DA + + + +G S
Sbjct: 1 MDVNVRGPDGFTPLMIA-SCSGGGLET-----GNSEEEEDAPAVISDFIYQGAS------ 48
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
L N D T LH+AA+ AK LLEA A +D G TPL +
Sbjct: 49 LHNQTDRTGA-----TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 293 NLIKLLEDAKCTQL 306
+ ++L + T L
Sbjct: 104 GVFQILIRNRATDL 117
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 96 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 163
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N D L +A A G ++++ +L NG D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
TPLH+AA G +A++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G +PL+LAT+ G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N D G TPL A GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
A HG L ++ L++ GAD+N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 114 KTAFDISIGNGNEDLAEILQK 134
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N++D TPL++A + G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V D G TPL G+ + ++L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVL 99
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 119 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
F A +GDL ++K + G D+N+T GR PLH A G +I FL+ KG DIN
Sbjct: 5 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
DK TPLL A+ GH LL+ +GA V
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 220 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 279
A+ GD D +K ++ G D N R PLH AA G + + LL GA + D+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 280 NTPLDEGRMCGNKNLIKLL 298
TPL G+ + +KLL
Sbjct: 69 ITPLLSAVYEGHVSCVKLL 87
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 169 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS 226
+ KG D+N + G PL A CG + L+ +GA +N D L AV G
Sbjct: 22 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 81
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258
+K +LS G D + D T L ++ +
Sbjct: 82 SCVKLLLSKGADKTVKGPDGLTALEATDNQAI 113
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 224 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
G ++L+ +L G D N+ D H TPL A EG KLLL GA K G T L
Sbjct: 46 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Query: 284 D 284
+
Sbjct: 106 E 106
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L L+ L+ GAD+N D +PL A G+ L+ KG D +K G
Sbjct: 42 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
Query: 183 NTPL 186
T L
Sbjct: 102 LTAL 105
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 119 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
F A +GDL ++K + G D+N+T GR PLH A G +I FL+ KG DIN
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
DK TPLL A+ GH LL+ +GA V
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 220 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 279
A+ GD D +K ++ G D N R PLH AA G + + LL GA + D+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 280 NTPLDEGRMCGNKNLIKLL 298
TPL G+ + +KLL
Sbjct: 74 ITPLLSAVYEGHVSCVKLL 92
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 169 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS 226
+ KG D+N + G PL A CG + L+ +GA +N D L AV G
Sbjct: 27 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 86
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258
+K +LS G D + D T ++ +
Sbjct: 87 SCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 224 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
G ++L+ +L G D N+ D H TPL A EG KLLL GA K G T
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Query: 284 D 284
+
Sbjct: 111 E 111
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L L+ L+ GAD+N D +PL A G+ L+ KG D +K G
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Query: 183 NT 184
T
Sbjct: 107 LT 108
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL----- 186
+K L+ GA++N+ D +G PLH A S GY DI +LI +G + + G+TPL
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148
Query: 187 -----LEAIKCGHDGVT-SLLVKEGASLNVDDA------------------GSFLCIAVA 222
L + GV KE + + DA G+ L +A A
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 223 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 282
+G +++LK ++ D N +DYD TPLH AA G ++L+E + ++ G T
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268
Query: 283 LD 284
D
Sbjct: 269 FD 270
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
F +A GD ++ L+ GAD+N + DG + LH A D+ FL++ G +IN D
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGA---SLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
G PL A CG+ + L+ +GA ++N + + L V G
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 237 VD-PNSRDYDHR-------------------------TPLHVAASEGLYLMAKLLLEAGA 270
VD +R + R T LHVAA++G + KLL++A
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303
V KD G TPL G + ++L + C
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 31/138 (22%)
Query: 147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 206
+D + A S G + L L+++G DIN + G T L +A C D V
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNV--------- 86
Query: 207 SLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
D++K ++ NG + N D + PLH AAS G +A+ L+
Sbjct: 87 --------------------DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 267 EAGASVFTKDRWGNTPLD 284
GA V + G+TPLD
Sbjct: 127 SQGAHVGAVNSEGDTPLD 144
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G+ A + GD++ + R+L G D N + D T LH A + M K L+E GA+
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 272 VFTKDRWGNTPLDEGRMCG 290
+ D G PL CG
Sbjct: 99 INQPDNEGWIPLHAAASCG 117
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N++D D TPLH+AA EG + ++LL+AGA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
V +D++G T D GN++L ++L+ A
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
+L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVK 203
+N +DKFG T +I G++ + +L K
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--A 213
A G +D L+ G D+N KDK G TPL A + GH + +L+K GA +N D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 214 GSFLCIAVARGDSDL 228
+ I++ G+ DL
Sbjct: 69 KTAFDISIDNGNEDL 83
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 202
N D R+PL +A G E+ L++ + KD G+T L+ A+K G+ L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 203 KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 260
+G+++N D + L ++ G S++ +L +G + N R+ + TPL VA+ G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 261 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302
+ K LLE GA + +D G T R+ G + +IK+ + +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L+ G+++N D+ G++PL + GY +++ FL++ G ++N ++ G TPL+ A K G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
+ L++ GA ++ D A AR
Sbjct: 147 SEIVKKLLELGADISARDLTGLTAEASAR 175
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L+ GA++N + +G +PL +A+ G +I L++ G DI+ +D G T A G
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 195 DGVTSLLVK 203
V + +
Sbjct: 180 QEVIKIFTE 188
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIK 191
K L+ A AD D GR+PLH A S + + + L + D++ + G TPL+ A +
Sbjct: 39 KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 99 LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
N D T LH+AA AK LLEA A +D G TPL + + ++L
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 300 DAKCTQL 306
+ T L
Sbjct: 76 RNRATDL 82
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 96 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
LR + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 75 LRNRATDLDARMHDGTTPLILAARL---ALEG---MLEDLINSHADVNAVDDLGKSALHW 128
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N +D + L +A ++++ +L +G D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
D TPLH+AA G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G +PLHLA + +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N D G+TPL A GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GAD+N D DG +PLHLA G+ +I L++ G D+N +DKFG T +I G+
Sbjct: 66 LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 195 DGVTSLLVK 203
+ + +L K
Sbjct: 126 EDLAEILQK 134
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+ D TPLH+AA + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V D G+TPL + G+ ++++L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVL 99
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL 168
+ H+ + + + AA G L ++ L++ GAD+N D G++ ++ G ED+ L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L GAD+N DY G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N G TPL A H + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L GA +N +D + L +A G ++++ +L NG D N+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
RTPLH+AA + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G L ++ L++ GAD+N T GR+PLHLA + +I L++ G D+N +DKFG
Sbjct: 54 AAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ + +NG D N+ DY TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 272 VFTKDRWGNTPL 283
V G TPL
Sbjct: 73 VNATGNTGRTPL 84
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
L+ AGAD N D GR+PLH A + + + L + ++N + G TPL+ A +
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 194 HDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
+G+ L+ A +N D++G + L A A +++ + +L + + +++D TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
+AA EG Y +K LL+ A+ D P D + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
++ LI A AD+N D G++ LH A + + L+ + + +D TPL A +
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 192 CG 193
G
Sbjct: 194 EG 195
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 228 LLKRVLSNGVDPNSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 286
++ +L+ G + N+ D T LH+AA AK LL+AGA ++D G TPL
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 287 RMCGNKNLIKLLEDAKCTQLS 307
+ ++L + T L+
Sbjct: 92 VAADAMGVFQILLRNRATNLN 112
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+ AA HG L+ LI G +N D SPLH A G+ L++ G +N
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 238
+TPL A G +LL++ GAS+ + D S + A RG + + +++ G +
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
+ + TPL++A K LLE+GA V + + ++PL ++ L LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 299 ED 300
D
Sbjct: 186 MD 187
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN- 209
SP+H A G++ LI +G +NI +PL EA GH +L+K GA +N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 210 -VDDAGSFLCIAVARGDSDLLKRVLSNG--VDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
D + L A G D + +L +G V P S D +P+H AA G L+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 121
Query: 267 EAGASVFTKDRWGNTPL-----DEGRMCGNK 292
G ++ K TPL ++ R C K
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKK 152
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG 172
E++LA + AA G + + LI G +++ +PL+LA L++ G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 213
D+N + K ++PL + + + LL+ GA +A
Sbjct: 158 ADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNA 197
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%)
Query: 112 HEAELALRFNSAAYHGDLYQLKGLI--RAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 169
H A + R + Y Y KG I + G DLN T PLH AT +G+ + + L+
Sbjct: 47 HWAAINNRIDLVKY----YISKGAIVDQLGGDLNST------PLHWATRQGHLSMVVQLM 96
Query: 170 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS- 226
+ G D ++ D G + + A + GH + + L+ +G +++ D L A R S
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 227 DLLKRVLSNGVDPNSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 285
D + +L+ V N D H+ T LH A G + LLLEAGA+V ++ G + LD
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Query: 286 GRMCGNKNLIKLLEDAK 302
+ N +I L++A+
Sbjct: 217 AKQRKNVWMINHLQEAR 233
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D ++D + TPLH+AA G + KLLLEAGA
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
V +D++G T D GN++L ++L+
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 167
H+G ++L + AA G +++ L+ GAD+ D +G +PLHLA G+ ++
Sbjct: 19 HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75
Query: 168 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
L++ G D+ +DKFG T +I G++ + +L
Sbjct: 76 LLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--A 213
A G +D L+ G D+ KDK G+TPL A + GH V LL++ GA + D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 214 GSFLCIAVARGDSDL 228
+ I++ G+ DL
Sbjct: 91 KTAFDISIDNGNEDL 105
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 253 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D ++D + TPLH+AA G + KLLLEAGA
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
V +D++G T D GN++L ++L+
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 167
H+G ++L + AA G +++ L+ GAD+ D +G +PLHLA G+ ++
Sbjct: 1 HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 57
Query: 168 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
L++ G D+N +DKFG T +I G++ + +L
Sbjct: 58 LLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--A 213
A G +D L+ G D+ KDK G+TPL A + GH V LL++ GA +N D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 214 GSFLCIAVARGDSDL 228
+ I++ G+ DL
Sbjct: 73 KTAFDISIDNGNEDL 87
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 253 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 4/171 (2%)
Query: 131 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
+L + +G +N T DG SPLH+A G D+ L++ G + ++ PL A
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT 248
+ GH V L+ A N D + L A + G +L+ +L +G N+ + T
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 249 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
LH A E + +LLL GASV ++ T +D N +++LL+
Sbjct: 188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%)
Query: 110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 169
G A+ A+ + A G +K L+ + A NK D G +PL A S G+ ++ L+
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 170 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLL 229
Q G IN + GNT L EA+ H V LL+ GAS+ V + + A +S ++
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIM 232
Query: 230 K 230
+
Sbjct: 233 E 233
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 229 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 288
L +V ++G+ N D +PLHVAA G + LLL+ GA+ ++ PL
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 289 CGNKNLIKLLEDA 301
G+ ++K L D+
Sbjct: 129 QGHFQVVKCLLDS 141
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
+L + AA G +++ L+ GA TD+ G SPLHLA G+ T L++ GV
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
+ + K TPL A GH + +L+K GA +N D+LK
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA---------------KDMLK---- 100
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
T LH A + +LL++ GA V T+ ++ T D GN++L
Sbjct: 101 ------------MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 295 IKLLE 299
++L+
Sbjct: 149 AEILQ 153
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 97 RLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 156
++K++ D T+ + + + E N A ++ D+ K LI GAD+N + SP A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 157 TSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
++G +I ++++ D+N +++G L+ A + GH LL+++G ++D
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 216 F------LCIAVARGDS---DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
F + + G+ D++K ++ NG D + +D RT + A +G ++K+L
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 267 E 267
+
Sbjct: 199 Q 199
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
+++ D +G +PL++A +I LI +G DIN+++ ++P L A G + + +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 202 VKEGA-SLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA---- 254
+K LN + G+ L A +G D +K +L +G D D + A
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----REDIDFQNDFGYTALIEA 147
Query: 255 ---SEGLYL---MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
EG L + KLL+E GA KD G T +D G + K+L
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITLFLIQKGVDINIKDK 180
AA G+ +L L+ ++N DGR +PLHLA I L+Q G D++ KDK
Sbjct: 31 AARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
G PL A GH VT LL+K GA +N D F + A ++ ++ +LS+G D
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Query: 239 PN 240
P
Sbjct: 150 PT 151
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 84 FVCHGVLGKESNLRLKQVESDITFHI----GKHEAELALRFNSAAYHGDLYQLKGLI-RA 138
F H +L L +V+ + I E AL A+ H Q+ L+ R
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236
Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
GA++N+ + D +PLH+A R + D+ L + G +N D G T L A GH
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC 296
Query: 199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR 247
LL+ G+ ++ F A+ ++ ++++LS + D D+R
Sbjct: 297 RLLLSYGSDPSIISLQGF---TAAQMGNEAVQQILSESTPMRTSDVDYR 342
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 180 KFGNTPLLEAIKCGHD-GVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNG 236
++ LLEA + G++ + +LL + + D + L +A +++ +L +G
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 296
D +++D PLH A S G Y + +LLL+ GA V D W TPL E +KN ++
Sbjct: 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA---ASKNRVE 138
Query: 297 L 297
+
Sbjct: 139 V 139
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 121 NSAAY-HGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
N+ +Y H ++ +L L++ GA +N D +PLH A S+ ++ L+ G D + +
Sbjct: 97 NACSYGHYEVTEL--LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 180 KFGN-------TP-LLEAIKCGHDGVTSLLVKEGASL------------NVDDAGSF--- 216
G TP L E + G + L A L N S
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214
Query: 217 LCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
L AVA + + +L G + N ++ D TPLHVAA + ++L + GA +
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLL 298
D G T L + G+ +LL
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLL 299
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 220 AVARGDSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW 278
A G+ + L +L+ V+ ++ D TPLH+AA + +LLL+ GA V KD+
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 279 GNTPLDEGRMCGNKNLIKLL 298
G PL G+ + +LL
Sbjct: 91 GLVPLHNACSYGHYEVTELL 110
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 197 VTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
V LL+++GA++N D + L +A R +D+++ + +G N+ D +T LH AA
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 255 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY 311
G +LLL G+ G T GN+ + ++L ++ + S+ Y
Sbjct: 289 LAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQILSESTPMRTSDVDY 341
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
++L + AA G +++ L+ GAD+N D G +PLHLA + +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
D+N D G TPL GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 243
LLEA + G D +L+ GA +N +D L +A ++++ +L NG D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
TPLH+ A G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA + L ++ L++ GAD+N D G +PLHL G+ +I L++ G D+N +DKFG
Sbjct: 54 AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
D G L A G D ++ +++NG D N+ D TPLH+AA + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
V D G TPL M G+ ++++L
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVL 99
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+ AA HG L+ LI G +N D SPLH A G+ L++ G +N
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 238
+TPL A G +LL++ GAS+ + D S + A RG + + +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
+ + TPL++A K LLE+GA V + + ++PL ++ L LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Query: 299 ED 300
D
Sbjct: 242 MD 243
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN- 209
SP+H A G++ LI +G +NI +PL EA GH +L+K GA +N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 210 -VDDAGSFLCIAVARGDSDLLKRVLSNG--VDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
D + L A G D + +L +G V P S D +P+H AA G L+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 177
Query: 267 EAGASVFTKDRWGNTPL-----DEGRMCGNKNLIKLLE 299
G ++ K TPL ++ R C + KLLE
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRAC----VKKLLE 211
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG 172
E++LA + AA G + + LI G +++ +PL+LA L++ G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 213
D+N + K ++PL ++ + + LL+ GA +A
Sbjct: 214 ADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
+K L+ +GAD+N+ SPLH E++ L+ G D K+ G P +E +
Sbjct: 206 VKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP-VELVP 263
Query: 192 CGHDGVTSLLVKEGASL 208
L +EGASL
Sbjct: 264 PESPLAQLFLEREGASL 280
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GA N D G SP+H A G+ D L++ G D+N+ D G P+ A++ GH
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 195 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
V S L E + L+ DA L +A+ RG DL+ + + V P
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
A +RG +++ L ++ V + ++FG T L + + G + L+K+GAS NV D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 73
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
+ A G D LK ++ +G D N D P+H+A EG + L A + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 132
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D G TPL+ G ++L+ +L+
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDILQ 159
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRD 136
Query: 180 KFGNTPLLEAIKCGHDGVTSLL 201
G TPL A++ G + +L
Sbjct: 137 ARGLTPLELALQRGAQDLVDIL 158
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA HG + ++ L++ GAD S L LA S+GY DI L+ GVD+N D G
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 224
TPLL A+ H +L++ GA ++ D + + +AVA G
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 232
IN D+ G TPL+ A G V L++ GA + G S L +A ++G +D++K +
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
L GVD N D++ TPL A K+LLE+GA + G +D G +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 293 NLIKLLE 299
++ +++E
Sbjct: 165 SVQQVIE 171
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 18/165 (10%)
Query: 46 FKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQ---------LYFVCHGVLGKESNL 96
F+G +S ++Q+ + E +L + EQ NVI+ ++ HG + L
Sbjct: 15 FQGANSLSVHQLAAQ-GEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 71
Query: 97 RLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 156
+ + +GK E AL + + D+ +K L+ G D+N+ D++G +PL A
Sbjct: 72 LQNGADPQL---LGKGR-ESALSLACSKGYTDI--VKMLLDCGVDVNEYDWNGGTPLLYA 125
Query: 157 TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
+ L++ G D I+ G + A+ G+ V ++
Sbjct: 126 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 132 LKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPL 186
L+ L+ + A DL +YDG + LH+A + ++ L+++G DI+ D K G +PL
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 187 LEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY 244
+ A++ + LL++ GA++N S L A RG L++ ++ +G D + ++
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Query: 245 DHRTPLHVAASE 256
+ TPL VA S
Sbjct: 215 HNDTPLMVARSR 226
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 143 NKTDYDGRSPLHLATSRG-----YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 197
+ D DG +PLH+A +G + + LF Q G +++I + TPL A+ V
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 198 TSLLVKEGAS-LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS-----RDYDHRTPLH 251
LLV GAS + +D G S R L + P + R+YD T LH
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 252 VAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNKNLIKLL 298
VA + +LLLE GA + D + G +PL + ++++LL
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
A + L ++ L++ GA++N Y G S LH A+ RG + L++ G D ++K+
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 183 NTPLLEA 189
+TPL+ A
Sbjct: 217 DTPLMVA 223
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA HG + ++ L++ GAD S L LA S+GY DI L+ GVD+N D G
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 224
TPLL A+ H +L++ GA ++ D + + +AVA G
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 232
IN D+ G TPL+ A G V L++ GA + G S L +A ++G +D++K +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
L GVD N D++ TPL A K+LLE+GA + G +D G +
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 293 NLIKLLE 299
++ +++E
Sbjct: 147 SVQQVIE 153
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 176
+L + A G++ L I +N TD +G +PL A + G + FL+Q G D
Sbjct: 2 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS 234
+ K + L A G+ + +L+ G +N D G+ L AV +K +L
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 235 NGVDP 239
+G DP
Sbjct: 122 SGADP 126
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
+K L+ G D+N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 142
Query: 192 CGHDGVTSLL 201
G+ V ++
Sbjct: 143 LGYRSVQQVI 152
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA HG + ++ L++ GAD S L LA S+GY DI L+ GVD+N D G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 224
TPLL A+ H +L++ GA ++ D + + +AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 232
IN D+ G TPL+ A G V L++ GA + G S L +A ++G +D++K +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
L GVD N D++ TPL A K+LLE+GA + G +D G +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 293 NLIKLLE 299
++ +++E
Sbjct: 149 SVQQVIE 155
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 176
+L + A G++ L I +N TD +G +PL A + G + FL+Q G D
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS 234
+ K + L A G+ + +L+ G +N D G+ L AV +K +L
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 235 NGVDP 239
+G DP
Sbjct: 124 SGADP 128
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
+K L+ G D+N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144
Query: 192 CGHDGVTSLL 201
G+ V ++
Sbjct: 145 LGYRSVQQVI 154
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GA N D G SP+H A G+ D L++ G D+N+ D G P+ A++ GH
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 195 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
V S L E + L+ DA L +A+ RG DL+
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
A +RG +++ L ++ V + ++FG T L + + G + L+K+GAS NV D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 67
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
+ A G D LK ++ +G D N D P+H+A EG + L A + +
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 126
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D G TPL+ G ++L+ +L+
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 121 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDA 131
Query: 181 FGNTPLLEAIKCGHDGVTSLL 201
G TPL A++ G + +L
Sbjct: 132 RGLTPLELALQRGAQDLVDIL 152
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 164 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 221
+ L+L D+N D G +PL A + G V +L+ GA +NV + G + L +A
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
+ G D+++++L D N+ + PLH A G +A+ L+ GA V +++G
Sbjct: 76 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 282 PLDEGR 287
P+D+ +
Sbjct: 136 PVDKAK 141
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
LI GA +N + +PLHLA S G+ DI L+Q DIN ++ GN PL A G
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
Query: 195 DGVTSLLVKEGASLNV 210
D V LV GA +++
Sbjct: 113 DQVAEDLVANGALVSI 128
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA HG ++ L++ AD+N + G PLH A G + + L+ G ++I +K+G
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Query: 183 NTPLLEA 189
P+ +A
Sbjct: 134 EMPVDKA 140
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI-K 296
D N D +PLH A EG + ++L+ GA + +R +TPL G+++++ K
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 297 LLE-DAKCTQLSE-----FHY-CSQGMIGIAENLL----LLPLC 329
LL+ A ++E HY C G +AE+L+ L+ +C
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 129
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
A+ G++ ++ L+ GAD + + S L LA++ GY DI L+++ VDINI D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 224
TPLL A++ H L+ GA L + D+G + + +AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
+L + A G+L QLK +R G +L NK D G +PL A++ G + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 235
+I L KE S L +A G +D++ +L
Sbjct: 63 HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
VD N D++ TPL A + LL GA + T+ G TP+D G + +
Sbjct: 92 DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 296 KLLED 300
+++E+
Sbjct: 152 QVIEN 156
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 167
HI E E AL S + D+ L L+ D+N D++G +PL A +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 168 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
L+ +G D+ + G TP+ A+ G+ V ++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GA N D G SP+H A G+ D L++ G D+N D G+ P+ AI+ GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
V S L E + L+ DA + +AR
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELAR 147
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
A +RG +++ L ++ V + ++FG T L + + G V L+K+GAS NV DA
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
+ A G D LK ++ +G D N+ D P+H+A EG + L + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D G TPL+ R G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 121 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 79 HDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRDA 137
Query: 181 FGNTPLLEAIKCGHDGVTSLL 201
G TPL A + G + +L
Sbjct: 138 SGLTPLELARQRGAQNLMDIL 158
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 164 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 221
+ L+L D+N D G +PL A + G V +L+ GA +NV + G + L +A
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
+ G D+++++L D N+ + PLH A G +A+ L+ GA V +++G
Sbjct: 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 282 PLDEGR 287
P+D+ +
Sbjct: 141 PVDKAK 146
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
LI GA +N + +PLHLA S G+ DI L+Q DIN ++ GN PL A G
Sbjct: 58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
Query: 195 DGVTSLLVKEGASLNV 210
D V LV GA +++
Sbjct: 118 DQVAEDLVANGALVSI 133
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA HG ++ L++ AD+N + G PLH A G + + L+ G ++I +K+G
Sbjct: 79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Query: 183 NTPLLEA 189
P+ +A
Sbjct: 139 EMPVDKA 145
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI-K 296
D N D +PLH A EG + ++L+ GA + +R +TPL G+++++ K
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 297 LLE-DAKCTQLSE-----FHY-CSQGMIGIAENLL----LLPLC 329
LL+ A ++E HY C G +AE+L+ L+ +C
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GA N D G SP+H A G+ D L++ G D+N D G+ P+ AI+ GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
V S L E + L+ DA + +AR
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELAR 149
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
A +RG +++ L ++ V + ++FG T L + + G V L+K+GAS NV DA
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
+ A G D LK ++ +G D N+ D P+H+A EG + L + +
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
+D G TPL+ R G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 121 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 81 HDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRDA 139
Query: 181 FGNTPLLEAIKCGHDGVTSLL 201
G TPL A + G + +L
Sbjct: 140 SGLTPLELARQRGAQNLMDIL 160
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 145 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE 204
T++ G + LH+A+ +G +L+Q G D N+KD G TPL EA GH V LL++
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 205 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 264
A + N+ Y + +PLH AA G + KL
Sbjct: 66 KALV-------------------------------NTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307
LL GAS + +G P+D K+L+ L E + + S
Sbjct: 95 LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ 170
H E L A+ GD+ ++ L++ G+D N D+ G +PLH A + G+ + L+Q
Sbjct: 7 NHRGETLLHI--ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 171 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
+N ++PL +A K GH + LL+ GAS N
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+ A HG L ++ L++ A +N T Y SPLH A G+ DI L+ G N +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 180 KFGNTPL 186
FG P+
Sbjct: 107 IFGLRPV 113
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
A+ G++ ++ L+ GAD + + S L LA++ GY DI L+++ VDINI D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 224
TPLL A+ H L+ GA L + D+G + + +AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
+L + A G+L QLK +R G +L NK D G +PL A++ G + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 235
+I L KE S L +A G +D++ +L
Sbjct: 63 HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
VD N D++ TPL A + LL GA + T+ G TP+D G + +
Sbjct: 92 DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 296 KLLED 300
+++E+
Sbjct: 152 QVIEN 156
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 167
HI E E AL S + D+ L L+ D+N D++G +PL A +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 168 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
L+ +G D+ + G TP+ A+ G+ V ++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
+ A + ++++ L+ + L + D DGR PLH + S +IT FL+ K ++N+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 237
D DD+G + IA + G+ +++K + +
Sbjct: 66 DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 238 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
P+ ++ T LH+A + + +++ L+E GASV KD++ PL G+ LI
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 296 KLL 298
+LL
Sbjct: 157 ELL 159
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 141 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 200
DLNK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 201 LVKEGAS-LNVDDAGS----FLCIAVARGDSDLL 229
L G S +N D F +A GD+ +L
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
+ A + ++++ L+ + L + D DGR PLH + S +IT FL+ K ++N+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 237
D DD+G + IA + G+ +++K + +
Sbjct: 66 DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 238 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
P+ ++ T LH+A + + +++ L+E GASV KD++ PL G+ LI
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 296 KLL 298
+LL
Sbjct: 157 ELL 159
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 141 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 200
DLNK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 201 LVKEGAS-LNVDDAGS----FLCIAVARGDSDLL 229
L G S +N D F +A GD+ +L
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
+ A + ++++ L+ + L + D DGR PLH + S +IT FL+ K ++N+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 237
D DD+G + IA + G+ +++K + +
Sbjct: 66 DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 238 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
P+ ++ T LH+A + + +++ L+E GASV KD++ PL G+ LI
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 296 KLL 298
+LL
Sbjct: 157 ELL 159
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 141 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 200
DLNK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 201 LVKEGAS-LNVDDAGS----FLCIAVARGDSDLL 229
L G S +N D F +A GD+ +L
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 103 SDITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
DI + +H A+ LR F AA G + LK + GAD+N+ D+ G +
Sbjct: 52 EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME 111
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE- 204
A G FL ++G ++N++ K G T L++A + GH V +L+ E
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 205 GASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG- 257
GA +N D+ G + + ++ DSD + +L +G D N R +TPL +A +
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 258 LYLMAKLLLEAGASVFTKDRWGNTPL 283
L L+ +LL + + D G T L
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTAL 257
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 123 AAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
A + D+ ++ L+ GA++N + + G +PLH A EDI L++ G D ++ K
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 239
G TP L A G + L + +GA +N D F A G LK + G +
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 240 NSRDYDHR----------TPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL 283
N R T L AA +G + K+LL E GA V D G L
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 40/187 (21%)
Query: 91 GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLI-RAGADLNKTDYDG 149
G NLR K E G A AA G + LK L+ GAD+N D G
Sbjct: 128 GANVNLRRKTKEDQERLRKGG-----ATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 150 RSPL-HLATSRGYED---ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 205
R+ L H S D IT L+ G D+N++ + G TPL+ A++ H G+ L+++
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ- 241
Query: 206 ASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
++ N D D +T L +A L +A+LL
Sbjct: 242 -----------------------------EHIEINDTDSDGKTALLLAVELKLKKIAELL 272
Query: 266 LEAGASV 272
+ GAS
Sbjct: 273 CKRGAST 279
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCG 193
L+ GAD+N G++PL LA + + + L+ Q+ ++IN D G T LL A++
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264
Query: 194 HDGVTSLLVKEGASLNVDD 212
+ LL K GAS + D
Sbjct: 265 LKKIAELLCKRGASTDCGD 283
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
N L++A++ + L++ GA++N ++ G + L AV D+++ +L +G DP
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
R + TP +AA G + KL L GA V D +G T E + G +K L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 174
AL F ++ + L + + GAD+N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
+N D G PL A GH G+ L +K GA L D+ L IA+ ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GA++N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 195 DGVTSLL 201
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
+L NG + N D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 292 KNLIKLLEDAK 302
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 232 VLSNGVDPN--SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
L++G D N + D+ TPL A + L + LL+ GA+V D G PL +
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 290 GNKNLIKLL 298
G+ L L
Sbjct: 279 GHTGLACLF 287
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 174
AL F ++ + L + + GAD+N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
+N D G PL A GH G+ L +K GA L D+ L IA+ ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GA++N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 195 DGVTSLL 201
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
+L NG + N D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 292 KNLIKLLEDAK 302
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 232 VLSNGVDPN--SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
L++G D N + D+ TPL A + L + LL+ GA+V D G PL +
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 290 GNKNLIKLL 298
G+ L L
Sbjct: 279 GHTGLACLF 287
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 174
AL F ++ + L + + GAD+N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
+N D G PL A GH G+ L +K GA L D+ L IA+ ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L++ GA++N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 195 DGVTSLL 201
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
+L NG + N D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 292 KNLIKLLEDAK 302
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 232 VLSNGVDPN--SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
L++G D N + D+ TPL A + L + LL+ GA+V D G PL +
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 290 GNKNLIKLL 298
G+ L L
Sbjct: 279 GHTGLACLF 287
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 25/205 (12%)
Query: 104 DITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 156
DI + +H A+ LR F AA G + LK + GAD+N+ D+ G + A
Sbjct: 73 DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 132
Query: 157 TSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE-G 205
G FL ++G ++N++ K G T L++A + GH V +L+ E G
Sbjct: 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 206 ASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG-L 258
A +N D+ G + + ++ DSD + +L +G D N R +TPL +A + L
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 259 YLMAKLLLEAGASVFTKDRWGNTPL 283
L+ +LL + + D G T L
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTAL 277
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 123 AAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
A + D+ ++ L+ GA++N + + G +PLH A EDI L++ G D ++ K
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 239
G TP + A G + L + +GA +N D F A G LK + G +
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 240 NSRDYDHR----------TPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL 283
N R T L AA +G + K+LL E GA V D G L
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCG 193
L+ GAD+N G++PL LA + + + L+ Q+ ++IN D G T LL A++
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 284
Query: 194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVD----PNSRDY 244
+ LL K GAS D G + A D L+K +LS+G P + D+
Sbjct: 285 LKKIAELLCKRGAST---DCGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDW 336
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 91 GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLI-RAGADLNKTDYDG 149
G NLR K E G A AA G + LK L+ GAD+N D G
Sbjct: 148 GANVNLRRKTKEDQERLRKGG-----ATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 202
Query: 150 RSPL-HLATSRGYED---ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG-VTSLLVKE 204
R+ L H S D IT L+ G D+N++ + G TPL+ A++ H G V LL +E
Sbjct: 203 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 262
Query: 205 GASLNVDDA 213
+N D+
Sbjct: 263 HIEINDTDS 271
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
N L++A++ + L++ GA++N ++ G + L AV D+++ +L +G DP
Sbjct: 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 85
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
R + TP +AA G + KL L GA V D +G T E + G +K L
Sbjct: 86 VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 91 GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
GK +NLR K I + LAL +S+ G+ ++ +I D + + +G
Sbjct: 14 GKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPNDEGI 71
Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 208
+ LH A G+ +I FL+Q GV++N D G TPL A C + V LV+ GA++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 207 SLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
SL D+ + L AV G ++++K ++ GV+ N+ D D TPLH AAS + K L+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 267 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLL 325
E+GA+VF + ++ D KC ++ E + CSQ + G+ E + +
Sbjct: 124 ESGAAVFAM---------------TYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGI 167
Query: 326 L 326
+
Sbjct: 168 M 168
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L N D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
++
Sbjct: 156 MQ 157
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L+ GA+ + D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 195 DGVTSLLVKEGAS 207
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 178
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 206
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
+P+ +D +H AA G + LLE A V +D GN PL
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 91 GKESNLRLKQVESDITFH---IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDY 147
GK +NLR + S+ H + + LAL +S+ G+ ++ +I D + +
Sbjct: 12 GKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPND 68
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
+G + LH A G+ +I FL+Q GV++N D G TPL A C + V LV+ GA+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 208 L 208
+
Sbjct: 129 V 129
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVK-----EGASLNVDDAGSFLCIAVARGDSDLLKR 231
++ KF PL + +G L+ + + SL D+ + L AV G ++++K
Sbjct: 29 MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
++ GV+ N+ D D TPLH AAS + K L+E+GA+VF
Sbjct: 89 LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM---------------T 133
Query: 292 KNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLLL 326
+ ++ D KC ++ E + CSQ + G+ E + ++
Sbjct: 134 YSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGIM 168
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 168 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGD 225
L + D++ + G TPL+ A + +G+ L+ A +N VDD G S L A A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 285
D +L NG + + ++ TPL +AA EG Y AK+LL+ A+ D P D
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 286 GRMCGNKNLIKLLED 300
+ + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 96 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
LR + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARL---ALEG---MLEDLINSHADVNAVDDLGKSALHW 54
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 55 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMD 114
Query: 216 FLCIAVAR 223
L +A+
Sbjct: 115 RLPRDIAQ 122
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
SAA GDL QL L++ ++N + GR+ L + G +I L+ +G + ++KD+
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
GN + +A + G FL D L+ +L D N
Sbjct: 70 GNAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L++
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 178
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 206
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
+P+ +D +H AA G + LLE A V +D GN PL
Sbjct: 61 ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDIT-LFLIQKGVDINIKDKF 181
A HG + +K L+ AD+N D DG + L A G+++I L L DI++ D+
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 182 GNTPLLEAIKCGHDGVTSLL 201
G+T L+ A+ G + S+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 128 DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 187
D+ + L R G K G++ L LA S G D+ L+ D+N++D G+T L+
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM 221
Query: 188 EAIKCGHDGVTSLLVKEGA---SLNVDDAGSFLCIAVARGDSDLLKRVLS 234
A + GH + LL+ + SL D + L +A+ G S++ + S
Sbjct: 222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
++
Sbjct: 156 MQ 157
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L+ GA+ + D G + +H A G D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 195 DGVTSLLVKEGAS 207
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 178
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 206
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
+P+ +D +H AA G + LLE A V +D GN PL
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 50/221 (22%)
Query: 129 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 188
+++ K I AGAD+N D D +PL LA + +L + G D I +K + L +
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 189 AIKC-------------------------------------GHDGVTS--LLVKEGASLN 209
A G D V S LLV++GA ++
Sbjct: 206 AAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 210 VDDAG----------SFLCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGL 258
D A + L A + ++K ++ G + + +D D +TP+ +AA EG
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 259 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
+ L++ GASV D +T + + N++ + +
Sbjct: 326 IEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
++
Sbjct: 156 MQ 157
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L+ GA+ + D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 195 DGVTSLLVKEGAS 207
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 178
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 206
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 296
+P+ +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 297 LL 298
L
Sbjct: 121 FL 122
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
++
Sbjct: 156 MQ 157
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
L+ GA+ + D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 195 DGVTSLLVKEGAS 207
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 178
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 206
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
+P+ +D +H AA G + LLE A V +D GN PL
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
L A +RG + L++ G D N ++FG P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 213 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
+ P+H AA EG +L AGA +
Sbjct: 75 PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
D WG P+D G++++ + L A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 169
G +A LA +AA G + ++ L+ AGAD N + GR P+ + G + L+
Sbjct: 10 GSSDAGLA----TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL 64
Query: 170 QKGVDINIKDKFGNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 222
G + N D T P+ +A + G +L + GA L+V DA L + +A
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 200
L T+Y+G + LHLA+ GY I L+ G D+N ++ G T L A+ + + SL
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 201 LVKEGASLN 209
L+K GA +N
Sbjct: 167 LLKCGADVN 175
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 131 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
Q+KG + A LN + ++PLHLA +I L+ G D ++D GNTPL A
Sbjct: 27 QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 83
Query: 191 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 242
+ G +L + + L + C+ +A G +++ ++S G D N++
Sbjct: 84 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Query: 243 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 282
+ + RT LH+A + LLL+ GA V G +P
Sbjct: 144 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 210 VDDAGSFLCIAVARGDS----DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
+D SFL +A+ + +++++V + N ++ +TPLH+A +A+ L
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 266 LEAGASVFTKDRWGNTPL 283
L AG +D GNTPL
Sbjct: 62 LGAGCDPELRDFRGNTPL 79
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSR 159
L++ GAD+N+ Y G SP L R
Sbjct: 167 LLKCGADVNRVTYQGYSPYQLTWGR 191
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 200
L T+Y+G + LHLA+ GY I L+ G D+N ++ G T L A+ + + SL
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 201 LVKEGASLN 209
L+K GA +N
Sbjct: 170 LLKCGADVN 178
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 131 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
Q+KG + A LN + ++PLHLA +I L+ G D ++D GNTPL A
Sbjct: 30 QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 191 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 242
+ G +L + + L + C+ +A G +++ ++S G D N++
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 243 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 282
+ + RT LH+A + LLL+ GA V G +P
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 210 VDDAGSFLCIAVARGDS----DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
+D SFL +A+ + +++++V + N ++ +TPLH+A +A+ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 266 LEAGASVFTKDRWGNTPL 283
L AG +D GNTPL
Sbjct: 65 LGAGCDPELRDFRGNTPL 82
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSR 159
L++ GAD+N+ Y G SP L R
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGR 194
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 149 GRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL---LVK 203
G++ LH G Y + L+Q G KDK TPL A + + L V
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 204 EGASLNVDDAG----SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY 259
+SL +D A S L A+ D+ R + G+D N D +H PL+++
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXV 257
Query: 260 LMAKLLLE 267
L+ K LL+
Sbjct: 258 LLTKELLQ 265
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 144 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 203
K+D + +H+A +G D LI+ GV I+++FG T L A K G L
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 204 EGASLNVDDAGSFLCIAVARGDSDLLKRVL----SNGVDPNS--RDYDHR---------- 247
G ++ + +AV +DL+ ++ G P S + D R
Sbjct: 75 VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 248 -----TPLHVAASEGLYLMA--KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
T LH G + K+L++ GAS KD+ TPL N+ + L D
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXD 194
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
L+ + G S LH A +ED+ ++ G+D+N +D PL +++ LL
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAA----XVLL 259
Query: 202 VKE 204
KE
Sbjct: 260 TKE 262
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 31/158 (19%)
Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
L A +RG + L++ G + N + +G P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 213 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
+ P+H AA EG +L AGA +
Sbjct: 75 PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH 310
+D WG P+D G++++ + L A H
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
+AA G + +++ L+ AGA+ N + GR P+ + G + L+ G + N D
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPA 76
Query: 182 GNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 222
T P+ +A + G +L + GA L+V DA L + +A
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
AA G+L ++ ++ D ++ + +G + LH A I FLI G ++N D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASL 208
TPL A C + LV+ GA++
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAI 113
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 220 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 279
A G+ +++++ + DP+ + + T LH A Y + L+ AGA+V + D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 280 NTPLDEGRMCGN 291
TPL C +
Sbjct: 88 WTPLHCAASCND 99
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 186 LLEAIKCGHDGVTSLLVKE--GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
LL+A G V VKE S ++ + L A+ + ++ +++ G + NS D
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274
TPLH AAS ++ L++ GA++F
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
A H D ++ L AGADLNK + GR+PLHLA + L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 217
G TPL A+ + + LL GA +D G L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 200
L +YDG +PLH+A ++ L G D+N + G TPL A++ V L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 201 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 260
L+K GA DP +R Y RTPL A +
Sbjct: 211 LLKAGA-------------------------------DPTARMYGGRTPLGSALLRPNPI 239
Query: 261 MAKLLLEAGA 270
+A+LL GA
Sbjct: 240 LARLLRAHGA 249
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-HRTPLHVAASEGLYLMAKLLLEAGA 270
D + L +AV D+++++ + G D N + RTPLH+A + +LLL+AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
+ G TPL + N L +LL
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 149 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 208
G++ LHLA G L G + + ++ G+T L A + +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 209 NVDDAGSFL-----CI-----AVARGDSDLLKRVLSNGVDPNSRD---------YDHRTP 249
D + ++L C A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPL 283
LHVA M +LL +AGA + + G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
A H D ++ L AGADLNK + GR+PLHLA + L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 217
G TPL A+ + + LL GA +D G L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 200
L +YDG +PLH+A ++ L G D+N + G TPL A++ V L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 201 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 260
L+K GA DP +R Y RTPL A +
Sbjct: 211 LLKAGA-------------------------------DPTARMYGGRTPLGSALLRPNPI 239
Query: 261 MAKLLLEAGA 270
+A+LL GA
Sbjct: 240 LARLLRAHGA 249
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-HRTPLHVAASEGLYLMAKLLLEAGA 270
D + L +AV D+++++ + G D N + RTPLH+A + +LLL+AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
+ G TPL + N L +LL
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 149 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 208
G++ LHLA G L G + + ++ G+T L A + +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 209 NVDDAGSFL-----CI-----AVARGDSDLLKRVLSNGVDPNSRD---------YDHRTP 249
D + ++L C A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPL 283
LHVA M +LL +AGA + + G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 77 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 128
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G V ++YF+ HGV G
Sbjct: 77 VATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAG 128
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 122
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 76 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 127
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 122
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 31/158 (19%)
Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
L A +RG + L++ G N + +G P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 213 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
+ P+H AA EG +L AGA +
Sbjct: 75 PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH 310
+D WG P+D G++++ + L A H
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+AA G + +++ L+ AGA N + GR P+ + G + L+ G + N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 180 KFGNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 222
T P+ +A + G +L + GA L+V DA L + +A
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
P+H A G+ D + L + G ++++D +G P+ A + GH V L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 72 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 123
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 77 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 128
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF+ HGV+
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 68 PGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHG 127
P E+ +E+G++I S R + S+ ++ + + + AA G
Sbjct: 28 PDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSN---YVAEQAESIDNPLHEAAKRG 84
Query: 128 DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPL 186
+L L+ + +N D G + L+ A G++DI L Q +++N ++K G+T L
Sbjct: 85 NLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTAL 144
Query: 187 LEAIKCGHDGVTSLLVKEGASLNV 210
A G+ + LL+ +GA ++
Sbjct: 145 HAAAWKGYADIVQLLLAKGARTDL 168
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGASLN 209
+PLH A RG + V +N DK G+T L A GH D V L + LN
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 210 VDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 255
+ + L A +G +D+++ +L+ G + R+ + + A +
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATN 182
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 141 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+LN+ + G + LH A +GY DI L+ KG ++++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
+ V F G S F+ ++V L E F P + ++++G D+++F+ G++
Sbjct: 73 VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIV 123
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 1 MRPGP-----AVARACGRKEEVRYLLWIRLYPVRK------------ISQTLYMPYIEKV 43
M PG A+ C R V+ L+ ++L+ + + I T YM +++ V
Sbjct: 103 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV 162
Query: 44 SLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
F+ E ++++ L E + GE I+ QG D + + G
Sbjct: 163 PTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKG 207
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 186
Y G PL A G E+I LI+ G DI +D GNT L
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 150 RSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL--------LEAIKCGHDGVTSL 200
SPL LA + ++ L +G +++ + G T L LEA + L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 201 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVD-------------PNSRDYDHR 247
V E + + + + L IAV + +L++ +L+ G P++ Y
Sbjct: 64 -VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 248 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
PL AA G + +LL+E GA + +D GNT L
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
LF F+ + +L E F PG+ I+ +G + + YF+ HGV+
Sbjct: 79 LFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVS 125
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 42 KVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
++ LF+ S + + + + F PGE ++ QG+ + +YFVC G +
Sbjct: 79 QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 32/144 (22%)
Query: 164 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
I+ FLI KG DI + K G T + G + +T
Sbjct: 57 ISXFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT------------------------- 91
Query: 224 GDSDLLKRVLSNGVDPNSRDYDHRTPLH-------VAASEGLYLMAKLLLEAGASVFTKD 276
G ++L K L G D + ++ + V +E + L + ++G + KD
Sbjct: 92 GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEXIPLYKLIFSQSGLQLLIKD 151
Query: 277 RWGNTPLDEGRMCGNKNLIKLLED 300
+WG T L+ + C +K ED
Sbjct: 152 KWGLTALEFVKRCQKPIALKXXED 175
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 33 QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG- 91
+ ++ +IE V LFK +IV + E+ + GE I+ QG D Y + G +
Sbjct: 155 RKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSI 214
Query: 92 -----KESNLRLKQVESDITF-HIGKHEAELALRFN 121
+SN E +I H G++ ELAL N
Sbjct: 215 LIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTN 250
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 217 LCIAVARGDS-DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275
L + VA S L+ ++ NG +++ D T LH AA KLLL+ A V T
Sbjct: 196 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 255
Query: 276 DRWGNTPLDEGRMCGNKNLIKLLEDAK 302
+ G T LD R +K +LLE A+
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQAQ 282
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 135 LIRAGADLNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 186
L AGADL+ D G + LH+A ++ L++ G DI ++D+ G T L
Sbjct: 96 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
+E + +AA D L L+ D++ D +GR+ L G + L + G
Sbjct: 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101
Query: 174 DINIKDKFGN-TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
D++ +D G T L A V LV+ GA + V+D + +AR
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
+ +AA D L L+ D++ D +GR+ L G + L + G D++ +D
Sbjct: 48 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106
Query: 180 KFGN-TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
G T L A V LV+ GA + V+D + +AR
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 217 LCIAVARGDS-DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275
L + VA S L+ ++ NG +++ D T LH AA KLLL+ A V T
Sbjct: 177 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 236
Query: 276 DRWGNTPLDEGRMCGNKNLIKLLEDAK 302
+ G T LD R +K +LLE A+
Sbjct: 237 NEAGETALDIARKKHHKECEELLEQAQ 263
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
LFK E ++Q++ + E+ GE +++QG+ D Y + G
Sbjct: 45 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF 90
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
LFK E ++Q++ + E+ GE +++QG+ D Y + G
Sbjct: 51 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF 96
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 54 INQIVIRLHEEFF------LPGEVIMEQGNVIDQLYFVCHGV 89
+NQ++I HE+FF LP E N + +YF HG+
Sbjct: 1 MNQLLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGL 42
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 208
PLH A + I L+ G+D + D GNT L A+ G+ L VK+ L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 74 EQGNVID--QLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNS-AAYHGDLY 130
E+GN++D Q+ F+C + + L+ V S + ++G ++A A S GD Y
Sbjct: 272 EKGNIVDGDQIMFICAKYMKETGQLKHNTVVSTVMSNLGFYKALEANGITSDKTAVGDRY 331
Query: 131 QLKGLIRAGADL 142
++ + R G +L
Sbjct: 332 VMEEMKRGGYNL 343
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii
Beta Regulatory Subunit Of Camp-Dependent Protein
Kinase
Length = 305
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
LFK E ++Q++ + E+ GE +++QG+ D Y + G
Sbjct: 41 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF 86
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
LFK E ++Q++ + E+ GE +++QG+ D Y + G
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF 197
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
LFK E ++Q++ + E+ GE +++QG+ D Y + G
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF 197
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 229 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 286
LK +++N + N++D + T L++AA G + LL+ GA F ++ G P+D G
Sbjct: 268 LKWIIANML--NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
>pdb|1OLT|A Chain A, Coproporphyrinogen Iii Oxidase (Hemn) From Escherichia
Coli Is A Radical Sam Enzyme
Length = 457
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 16 EVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIR 60
E +L + YP R +S +++P+ K+ F GC N+IV R
Sbjct: 38 EQAFLQAVARYPERPLSLYVHIPFCHKLCYFCGC-----NKIVTR 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,890,567
Number of Sequences: 62578
Number of extensions: 413662
Number of successful extensions: 1752
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 517
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)