Query 020239
Match_columns 329
No_of_seqs 246 out of 4253
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.6E-39 5.3E-44 297.5 29.5 215 110-324 173-397 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.8E-39 6.3E-44 297.1 29.0 215 111-325 141-365 (437)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-39 5.6E-44 276.0 23.4 192 113-304 54-248 (253)
4 1wdy_A 2-5A-dependent ribonucl 100.0 2.4E-38 8.1E-43 272.6 29.4 196 112-307 68-281 (285)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-39 5.5E-44 276.0 21.1 219 109-327 3-246 (253)
6 4b93_B Ankyrin repeat domain-c 100.0 3.1E-40 1E-44 282.7 15.8 189 115-303 51-243 (269)
7 2f8y_A Notch homolog 1, transl 100.0 1.8E-38 6E-43 264.3 25.6 197 112-308 21-220 (223)
8 1k1a_A B-cell lymphoma 3-encod 100.0 2.2E-38 7.6E-43 266.6 25.6 217 111-327 4-239 (241)
9 1oy3_D Transcription factor in 100.0 5.3E-39 1.8E-43 276.7 21.5 209 111-320 4-265 (282)
10 1k1a_A B-cell lymphoma 3-encod 100.0 3.9E-39 1.3E-43 271.2 19.7 192 113-304 43-241 (241)
11 3b7b_A Euchromatic histone-lys 100.0 8E-38 2.7E-42 262.7 26.6 198 109-306 4-204 (237)
12 3utm_A Tankyrase-1; tankyrase, 100.0 4.5E-38 1.6E-42 279.0 26.1 205 104-308 46-309 (351)
13 2xai_A ASB-9, ankyrin repeat a 100.0 3.7E-38 1.3E-42 268.9 24.6 191 116-307 3-194 (261)
14 3aji_A 26S proteasome non-ATPa 100.0 7.3E-39 2.5E-43 268.0 19.8 193 111-303 35-229 (231)
15 2rfa_A Transient receptor pote 100.0 1.5E-38 5.1E-43 266.4 21.1 193 116-308 3-226 (232)
16 3d9h_A CDNA FLJ77766, highly s 100.0 5.6E-38 1.9E-42 271.2 25.0 214 110-325 53-274 (285)
17 3kea_A K1L; tropism, ANK repea 100.0 8.2E-39 2.8E-43 276.4 18.7 214 109-325 24-242 (285)
18 3b7b_A Euchromatic histone-lys 100.0 1.1E-37 3.6E-42 262.0 23.9 185 116-300 44-231 (237)
19 4g8k_A 2-5A-dependent ribonucl 100.0 5.1E-37 1.7E-41 271.5 28.5 281 5-305 29-327 (337)
20 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-37 4E-42 265.8 23.0 185 116-304 36-222 (261)
21 3aji_A 26S proteasome non-ATPa 100.0 4.6E-37 1.6E-41 257.1 25.4 210 116-325 6-226 (231)
22 3ljn_A Hypothetical protein; a 100.0 8.8E-38 3E-42 279.2 21.8 190 112-303 49-268 (364)
23 1wdy_A 2-5A-dependent ribonucl 100.0 8.6E-37 3E-41 262.8 27.0 213 113-325 36-274 (285)
24 3d9h_A CDNA FLJ77766, highly s 100.0 2.1E-37 7E-42 267.7 22.3 188 113-304 89-279 (285)
25 3hra_A Ankyrin repeat family p 100.0 4.8E-37 1.6E-41 251.4 23.2 187 116-302 5-201 (201)
26 2fo1_E LIN-12 protein; beta-ba 100.0 8.1E-38 2.8E-42 280.4 20.3 196 109-304 159-371 (373)
27 1oy3_D Transcription factor in 100.0 2.2E-37 7.5E-42 266.5 21.3 178 114-291 43-270 (282)
28 2dzn_A Probable 26S proteasome 100.0 1E-36 3.6E-41 254.3 24.5 192 116-307 2-203 (228)
29 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-36 4.1E-41 269.1 25.0 211 115-325 58-322 (337)
30 3eu9_A Huntingtin-interacting 100.0 2.2E-36 7.7E-41 253.8 24.5 190 116-305 42-236 (240)
31 1ikn_D Protein (I-kappa-B-alph 100.0 1.7E-38 5.7E-43 266.9 11.3 196 112-307 4-212 (236)
32 4b93_B Ankyrin repeat domain-c 100.0 6.4E-37 2.2E-41 262.1 21.2 195 112-306 7-212 (269)
33 2dzn_A Probable 26S proteasome 100.0 8.4E-37 2.9E-41 254.9 21.5 184 115-301 35-227 (228)
34 2etb_A Transient receptor pote 100.0 1.3E-37 4.4E-42 264.7 15.4 191 116-306 2-248 (256)
35 4gpm_A Engineered protein OR26 100.0 4.7E-36 1.6E-40 238.4 21.2 157 117-304 5-161 (169)
36 3eu9_A Huntingtin-interacting 100.0 2.1E-35 7E-40 248.0 24.7 216 111-326 4-232 (240)
37 2fo1_E LIN-12 protein; beta-ba 100.0 9E-37 3.1E-41 273.6 16.9 212 114-325 123-367 (373)
38 1s70_B 130 kDa myosin-binding 100.0 5.2E-36 1.8E-40 260.4 21.2 212 113-324 37-284 (299)
39 4gpm_A Engineered protein OR26 100.0 1.2E-35 4.1E-40 236.0 21.0 144 151-325 6-157 (169)
40 2f8y_A Notch homolog 1, transl 100.0 5.5E-36 1.9E-40 249.1 19.0 201 126-326 1-213 (223)
41 3utm_A Tankyrase-1; tankyrase, 100.0 3.8E-35 1.3E-39 260.2 25.2 215 112-326 20-302 (351)
42 1s70_B 130 kDa myosin-binding 100.0 2.9E-36 1E-40 261.9 17.7 187 114-300 71-286 (299)
43 2pnn_A Transient receptor pote 100.0 1.3E-36 4.6E-41 260.9 14.6 196 111-306 8-260 (273)
44 3kea_A K1L; tropism, ANK repea 100.0 1.1E-36 3.8E-41 263.0 13.9 184 116-306 62-248 (285)
45 3jxi_A Vanilloid receptor-rela 100.0 4E-36 1.4E-40 256.0 13.8 192 115-306 4-252 (260)
46 3ljn_A Hypothetical protein; a 100.0 1.2E-35 4.1E-40 265.4 13.8 189 115-303 83-313 (364)
47 4hbd_A KN motif and ankyrin re 100.0 3.3E-34 1.1E-38 246.3 14.3 186 118-303 78-274 (276)
48 2rfm_A Putative ankyrin repeat 100.0 3.5E-33 1.2E-37 227.0 18.4 160 143-302 29-190 (192)
49 1ikn_D Protein (I-kappa-B-alph 100.0 4.2E-34 1.4E-38 240.0 12.7 178 112-289 41-229 (236)
50 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.3E-32 7.8E-37 217.6 21.2 159 113-302 11-169 (169)
51 1sw6_A Regulatory protein SWI6 100.0 1.2E-33 4.2E-38 248.7 13.1 176 107-290 121-327 (327)
52 2rfa_A Transient receptor pote 100.0 2.2E-32 7.6E-37 228.8 19.9 178 148-325 2-218 (232)
53 3v31_A Ankyrin repeat family A 100.0 1.7E-32 5.7E-37 217.8 17.6 158 117-305 4-161 (167)
54 3v30_A DNA-binding protein rfx 100.0 1.2E-32 3.9E-37 219.9 16.1 164 118-281 4-170 (172)
55 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.5E-32 8.6E-37 215.6 17.2 157 116-304 5-162 (162)
56 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.5E-32 1.9E-36 213.7 17.5 146 93-271 17-162 (162)
57 1awc_B Protein (GA binding pro 100.0 2.6E-31 8.9E-36 207.9 20.0 151 116-298 2-152 (153)
58 2pnn_A Transient receptor pote 100.0 1.6E-32 5.4E-37 235.5 13.7 172 113-284 51-272 (273)
59 3v30_A DNA-binding protein rfx 100.0 1.2E-31 4E-36 214.0 17.4 160 149-308 2-164 (172)
60 3v31_A Ankyrin repeat family A 100.0 1.5E-31 5E-36 212.4 17.4 134 108-272 28-161 (167)
61 2rfm_A Putative ankyrin repeat 100.0 8.6E-32 2.9E-36 218.7 16.0 161 109-269 28-190 (192)
62 3twr_A Tankyrase-2; ankyrin re 100.0 2.6E-31 8.8E-36 210.6 17.1 159 113-303 5-164 (165)
63 3hra_A Ankyrin repeat family p 100.0 9.3E-31 3.2E-35 214.0 19.8 162 108-269 31-201 (201)
64 2etb_A Transient receptor pote 100.0 8.1E-32 2.8E-36 228.8 13.1 178 148-325 1-242 (256)
65 3f6q_A Integrin-linked protein 100.0 7.6E-31 2.6E-35 210.7 17.0 159 116-305 5-164 (179)
66 3f6q_A Integrin-linked protein 100.0 1.1E-30 3.9E-35 209.7 16.7 146 149-325 5-159 (179)
67 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.9E-30 1.3E-34 201.7 19.3 152 117-301 3-155 (156)
68 2vge_A RELA-associated inhibit 100.0 5.5E-34 1.9E-38 238.1 -5.5 185 111-298 16-207 (229)
69 1sw6_A Regulatory protein SWI6 100.0 9.5E-31 3.2E-35 230.2 12.7 183 118-308 99-312 (327)
70 1ycs_B 53BP2, P53BP2; ankyrin 100.0 9E-31 3.1E-35 220.2 7.2 187 114-303 3-203 (239)
71 4hbd_A KN motif and ankyrin re 100.0 3.1E-29 1E-33 215.4 16.9 161 109-269 104-273 (276)
72 3jxi_A Vanilloid receptor-rela 100.0 9E-30 3.1E-34 216.6 12.0 180 146-325 2-246 (260)
73 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.5E-29 5.1E-34 212.7 9.5 158 147-305 3-165 (239)
74 3t8k_A Uncharacterized protein 100.0 5.4E-29 1.9E-33 200.8 9.7 160 116-302 6-177 (186)
75 1d9s_A Cyclin-dependent kinase 100.0 3.2E-28 1.1E-32 186.5 12.5 134 139-304 2-136 (136)
76 1d9s_A Cyclin-dependent kinase 100.0 4.3E-28 1.5E-32 185.7 13.0 113 212-325 11-132 (136)
77 1bi7_B P16INK4A, MTS1, multipl 100.0 2.1E-28 7.3E-33 192.0 10.7 142 144-286 7-151 (156)
78 2vge_A RELA-associated inhibit 99.9 1.2E-29 4.2E-34 211.7 1.3 191 132-325 1-209 (229)
79 2aja_A Ankyrin repeat family p 99.9 1.5E-29 5E-34 225.5 0.2 204 115-326 91-371 (376)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 4.4E-27 1.5E-31 184.4 9.9 141 112-253 8-151 (156)
81 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-25 3.7E-30 169.5 16.7 125 149-304 2-126 (126)
82 2jab_A H10-2-G3; HER2, darpin, 99.9 5.5E-26 1.9E-30 173.9 15.1 125 147-302 12-136 (136)
83 2y1l_E Darpin-8.4; hydrolase-i 99.9 1E-25 3.4E-30 179.0 17.0 149 147-326 12-168 (169)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-25 3.7E-30 169.5 16.3 125 116-271 2-126 (126)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-25 4.9E-30 171.6 16.5 128 111-269 9-136 (136)
86 2aja_A Ankyrin repeat family p 99.9 9.4E-29 3.2E-33 220.2 -2.4 173 117-304 66-250 (376)
87 3deo_A Signal recognition part 99.9 1.8E-27 6E-32 191.8 4.4 138 115-301 43-181 (183)
88 3c5r_A BARD-1, BRCA1-associate 99.9 1.9E-26 6.6E-31 176.7 9.4 134 139-304 1-134 (137)
89 1awc_B Protein (GA binding pro 99.9 5E-25 1.7E-29 172.0 17.3 140 184-323 4-152 (153)
90 3twr_A Tankyrase-2; ankyrin re 99.9 3.3E-25 1.1E-29 175.2 15.9 149 146-325 5-161 (165)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.4E-25 4.7E-30 171.9 9.7 128 112-270 6-133 (137)
92 3ui2_A Signal recognition part 99.9 6.4E-25 2.2E-29 185.0 13.1 139 114-301 43-182 (244)
93 2b0o_E UPLC1; arfgap, structur 99.9 1E-24 3.6E-29 189.1 12.9 138 149-292 151-299 (301)
94 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.9E-24 1.7E-28 166.8 14.9 140 184-325 4-154 (156)
95 3deo_A Signal recognition part 99.9 5.2E-24 1.8E-28 171.4 14.3 88 106-193 66-154 (183)
96 3ui2_A Signal recognition part 99.9 2.6E-24 8.9E-29 181.2 13.1 116 107-270 68-184 (244)
97 3aaa_C Myotrophin, protein V-1 99.9 4.6E-24 1.6E-28 160.2 10.7 111 147-288 5-115 (123)
98 3ehr_A Osteoclast-stimulating 99.9 2.8E-24 9.6E-29 178.4 8.7 133 115-278 72-205 (222)
99 1dcq_A PYK2-associated protein 99.9 3.3E-22 1.1E-26 171.5 21.4 127 182-308 130-267 (278)
100 3t8k_A Uncharacterized protein 99.9 3E-24 1E-28 173.0 6.7 137 114-276 36-184 (186)
101 3ehr_A Osteoclast-stimulating 99.9 6.7E-24 2.3E-28 176.1 8.4 132 145-307 69-201 (222)
102 3aaa_C Myotrophin, protein V-1 99.9 2.5E-23 8.6E-28 156.2 10.8 113 113-256 4-116 (123)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.4E-22 4.7E-27 144.3 12.6 93 212-304 1-93 (93)
104 3lvq_E ARF-GAP with SH3 domain 99.9 2.4E-22 8.1E-27 186.4 15.6 126 118-274 134-268 (497)
105 1dcq_A PYK2-associated protein 99.9 1.5E-21 5.2E-26 167.3 17.4 128 114-272 128-264 (278)
106 3jue_A Arfgap with coiled-coil 99.9 5.9E-22 2E-26 175.8 14.9 144 147-290 197-348 (368)
107 3jue_A Arfgap with coiled-coil 99.9 8.7E-22 3E-26 174.7 14.8 145 180-324 197-348 (368)
108 2b0o_E UPLC1; arfgap, structur 99.9 4.2E-21 1.4E-25 166.4 18.7 123 182-304 151-284 (301)
109 3lvq_E ARF-GAP with SH3 domain 99.9 1.1E-21 3.9E-26 181.8 14.9 95 213-307 171-268 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.5E-21 5.2E-26 138.8 11.8 92 116-207 2-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 5.6E-21 1.9E-25 141.5 8.1 108 145-283 5-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.7E-20 5.8E-25 138.8 7.2 101 112-212 5-105 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 5.3E-19 1.8E-23 129.7 10.4 87 212-298 23-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 2.5E-18 8.7E-23 126.0 11.5 92 110-201 18-109 (110)
115 2ptm_A Hyperpolarization-activ 66.0 1.2 4.1E-05 34.7 -0.1 61 31-91 64-124 (198)
116 4g26_A Pentatricopeptide repea 60.8 14 0.00047 33.6 5.9 96 163-262 91-194 (501)
117 3bpz_A Potassium/sodium hyperp 59.5 1.1 3.9E-05 35.0 -1.4 61 31-91 65-125 (202)
118 3ukn_A Novel protein similar t 55.5 2.8 9.5E-05 33.0 0.3 57 34-91 72-128 (212)
119 3gyd_A CNMP-BD protein, cyclic 54.4 2.7 9.1E-05 32.4 0.0 77 15-91 10-92 (187)
120 4g26_A Pentatricopeptide repea 50.6 40 0.0014 30.5 7.3 101 130-234 91-199 (501)
121 1wgp_A Probable cyclic nucleot 46.6 4.1 0.00014 29.1 0.0 51 41-91 9-59 (137)
122 3ocp_A PRKG1 protein; serine/t 44.9 4.6 0.00016 29.0 -0.0 58 34-91 19-76 (139)
123 1vp6_A CNBD, cyclic-nucleotide 43.8 4.8 0.00016 28.8 -0.0 52 40-91 13-64 (138)
124 4f8a_A Potassium voltage-gated 43.3 3.3 0.00011 30.6 -1.0 61 31-91 20-80 (160)
125 3pna_A CAMP-dependent protein 38.4 6.9 0.00024 28.7 0.1 56 36-91 36-91 (154)
126 3mdp_A Cyclic nucleotide-bindi 37.2 4.8 0.00016 28.9 -1.0 52 40-91 8-59 (142)
127 2pqq_A Putative transcriptiona 34.6 7.6 0.00026 27.9 -0.2 52 40-91 7-58 (149)
128 2z69_A DNR protein; beta barre 33.0 8.5 0.00029 27.9 -0.2 53 39-91 13-65 (154)
129 3shr_A CGMP-dependent protein 33.0 9.6 0.00033 31.6 0.1 60 32-91 33-92 (299)
130 3idb_B CAMP-dependent protein 32.3 5.9 0.0002 29.3 -1.2 56 36-91 36-91 (161)
131 3dn7_A Cyclic nucleotide bindi 28.5 9.5 0.00033 29.1 -0.6 54 38-91 7-60 (194)
132 1gp8_A Protein (scaffolding pr 27.1 47 0.0016 18.0 2.1 16 153-168 17-32 (40)
133 3e97_A Transcriptional regulat 26.0 14 0.00049 29.0 0.0 52 40-91 8-59 (231)
134 3zrh_A Ubiquitin thioesterase 25.2 1.9E+02 0.0065 25.3 6.7 50 121-170 27-90 (454)
135 4ava_A Lysine acetyltransferas 23.6 18 0.0006 30.5 0.1 54 38-91 13-66 (333)
136 3beh_A MLL3241 protein; transm 23.0 17 0.00059 31.1 -0.1 53 39-91 229-281 (355)
137 2d93_A RAP guanine nucleotide 22.6 10 0.00035 26.9 -1.4 53 39-91 17-70 (134)
138 4ev0_A Transcription regulator 22.0 13 0.00044 28.9 -1.0 49 43-91 4-52 (216)
139 3dkw_A DNR protein; CRP-FNR, H 21.2 15 0.00052 28.7 -0.7 53 39-91 10-62 (227)
140 3of1_A CAMP-dependent protein 21.1 15 0.00053 29.0 -0.7 52 40-91 9-60 (246)
141 3zrh_A Ubiquitin thioesterase 20.6 2.7E+02 0.0093 24.4 6.7 24 244-267 67-90 (454)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-39 Score=297.53 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=181.3
Q ss_pred CccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239 110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 189 (329)
Q Consensus 110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 189 (329)
+..+..+.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 173 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 252 (437)
T 1n11_A 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252 (437)
T ss_dssp TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34455667888888888888888888888888888888888899999988888999999888888888888889999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239 190 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267 (329)
Q Consensus 190 ~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~ 267 (329)
+..|+.+++++|++++++++..+ +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 253 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999999999998888877654 5689999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc--------cccchhHHHHHhhh
Q 020239 268 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH--------YCSQGMIGIAENLL 324 (329)
Q Consensus 268 ~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~--------~~~~~~~~~~~~l~ 324 (329)
+|++++.+|..|+||||+|+..|+.++|++|+++|+....... +...|+.+++++|.
T Consensus 333 ~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~ 397 (437)
T 1n11_A 333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397 (437)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999999999999999886543321 23446666666664
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-39 Score=297.06 Aligned_cols=215 Identities=27% Similarity=0.314 Sum_probs=198.0
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 190 (329)
..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 141 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 220 (437)
T 1n11_A 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 220 (437)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA 268 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 268 (329)
..|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++
T Consensus 221 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 9999999999999999888764 67999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhc
Q 020239 269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~ 325 (329)
|++++.++..|+||||+|+..|+.++|++|+++|+..-.. ..++..++.+++++|+.
T Consensus 301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 9999999999999999999999999999999998864332 22456789999999985
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-39 Score=276.00 Aligned_cols=192 Identities=29% Similarity=0.338 Sum_probs=181.5
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-CccccCCCCCcHHHHHHH
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIK 191 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~ 191 (329)
+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|. +++..+..|.||||+|+.
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 133 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence 4556799999999999999999999999999999999999999999999999999999987 899999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC
Q 020239 192 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 269 (329)
Q Consensus 192 ~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g 269 (329)
.|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 213 (253)
T 1yyh_A 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213 (253)
T ss_dssp HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999998766 679999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 270 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 270 ~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
++++.+|..|+||+++|+..|+.+++++|.+....
T Consensus 214 a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999887553
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-38 Score=272.61 Aligned_cols=196 Identities=28% Similarity=0.334 Sum_probs=184.7
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccc----------CCC
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK----------DKF 181 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~ 181 (329)
.+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. +..
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccC
Confidence 4456679999999999999999999999999999999999999999999999999999999999877 778
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCC--CCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 020239 182 GNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCIAVARGD----SDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254 (329)
Q Consensus 182 g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~--~~~~l~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 254 (329)
|.||||+|+..|+.+++++|++. |.+++..+ +.||||+|+..++ .+++++|++.|++++.++..|.||||+|+
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 99999999999999999999987 88888755 6799999999999 99999999999999999999999999999
Q ss_pred HhCcHHHHHHHHH-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239 255 SEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307 (329)
Q Consensus 255 ~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~ 307 (329)
..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++...
T Consensus 228 ~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred HcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 9999999999999 8999999999999999999999999999999999997644
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-39 Score=276.05 Aligned_cols=219 Identities=25% Similarity=0.260 Sum_probs=168.1
Q ss_pred cCccchhhhHHHHHHHHcC-------------CHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 020239 109 IGKHEAELALRFNSAAYHG-------------DLYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVD 174 (329)
Q Consensus 109 ~~~~~~~~~~~l~~A~~~g-------------~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 174 (329)
++..+..+.||||+|+..| +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3446678899999999987 89999999999999865 488999999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHH
Q 020239 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251 (329)
Q Consensus 175 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 251 (329)
++..+..|.||||+|+..|+.+++++|++.+. +++.. .+.||||+|+..|+.+++++|++.|++++.+|..|.||||
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 162 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 99999999999999999999999999999976 66654 4779999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhh
Q 020239 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENL 323 (329)
Q Consensus 252 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l 323 (329)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+..... ..+...|+.+++++|
T Consensus 163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999865333 224577999999998
Q ss_pred hcCC
Q 020239 324 LLLP 327 (329)
Q Consensus 324 ~~~~ 327 (329)
...+
T Consensus 243 ~~~~ 246 (253)
T 1yyh_A 243 DLEH 246 (253)
T ss_dssp HC--
T ss_pred HHHh
Confidence 7653
No 6
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=282.68 Aligned_cols=189 Identities=25% Similarity=0.337 Sum_probs=152.5
Q ss_pred hhhHHHHHHHHcCCHH-HHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239 115 ELALRFNSAAYHGDLY-QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 193 (329)
.+.+||+.|+..++.+ ++++|++.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+
T Consensus 51 ~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~ 130 (269)
T 4b93_B 51 EFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG 130 (269)
T ss_dssp ------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccC
Confidence 3458899999888764 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239 194 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271 (329)
Q Consensus 194 ~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~ 271 (329)
+.+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++|++|+++|++
T Consensus 131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210 (269)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9999999999999998765 67999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcHHHHHHHcCC-HHHHHHHHHcCC
Q 020239 272 VFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAKC 303 (329)
Q Consensus 272 ~~~~~~~g~t~l~~A~~~~~-~~iv~~L~~~~~ 303 (329)
++.+|..|+||||+|+++++ .+++++|.+.+.
T Consensus 211 ~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 211 VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp SCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence 99999999999999998775 344455544443
No 7
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.8e-38 Score=264.26 Aligned_cols=197 Identities=28% Similarity=0.339 Sum_probs=187.3
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-CccccCCCCCcHHHHHH
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI 190 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~ 190 (329)
.+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 100 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999987 88999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA 268 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 268 (329)
..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++
T Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999988765 67999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239 269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE 308 (329)
Q Consensus 269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~ 308 (329)
|++++.+|..|.||+++|+..++.+++++|+++|+....+
T Consensus 181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~~ 220 (223)
T 2f8y_A 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220 (223)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC-
T ss_pred CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcccc
Confidence 9999999999999999999999999999999999865443
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.2e-38 Score=266.60 Aligned_cols=217 Identities=22% Similarity=0.269 Sum_probs=193.7
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHH
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIR----AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 186 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l 186 (329)
..+..+.||||+|+..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 356678899999999999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCC----CCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHHhCcH
Q 020239 187 LEAIKCGHDGVTSLLVKEGA----SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLY 259 (329)
Q Consensus 187 ~~A~~~~~~~~v~~Ll~~~~----~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~ 259 (329)
|+|+..|+.+++++|++.+. +++.. .+.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 99999999999999999976 55544 46799999999999999999999999999999 8899999999999999
Q ss_pred HHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhcCC
Q 020239 260 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLLLP 327 (329)
Q Consensus 260 ~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~ 327 (329)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+..... ..+...++.++++.|..-|
T Consensus 164 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 9999999999999999999999999999999999999999998864322 2345679999999887654
No 9
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.3e-39 Score=276.66 Aligned_cols=209 Identities=23% Similarity=0.236 Sum_probs=184.2
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 187 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 187 (329)
..+..+.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 3566788999999999999999999999988 7888999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCC-----------------------------------------------CCc--CCCCcHHH
Q 020239 188 EAIKCGHDGVTSLLVKEGAS-----------------------------------------------LNV--DDAGSFLC 218 (329)
Q Consensus 188 ~A~~~~~~~~v~~Ll~~~~~-----------------------------------------------~~~--~~~~~~l~ 218 (329)
+|+..|+.+++++|++++++ ++. ..+.||||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 99999999999999998754 222 34679999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHH
Q 020239 219 IAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 297 (329)
Q Consensus 219 ~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~ 297 (329)
+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~ 243 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence 99999999999999999999999985 49999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCccccccccchhHHHH
Q 020239 298 LEDAKCTQLSEFHYCSQGMIGIA 320 (329)
Q Consensus 298 L~~~~~~~~~~~~~~~~~~~~~~ 320 (329)
|+++|+..... ...+...+..+
T Consensus 244 Ll~~ga~~~~~-~~~g~tpl~~a 265 (282)
T 1oy3_D 244 LRAHGAPEPED-GGDKLSPCSSS 265 (282)
T ss_dssp HHHTTCCCCCC-C----------
T ss_pred HHHcCCCcCcC-CCccccccccc
Confidence 99999975443 23334444433
No 10
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.9e-39 Score=271.22 Aligned_cols=192 Identities=22% Similarity=0.265 Sum_probs=177.9
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC----CccccCCCCCcHHHH
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV----DINIKDKFGNTPLLE 188 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~ 188 (329)
+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+
T Consensus 43 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~ 122 (241)
T 1k1a_A 43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122 (241)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH
Confidence 3446699999999999999999999999999999999999999999999999999999987 788899999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCC---CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239 189 AIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265 (329)
Q Consensus 189 A~~~~~~~~v~~Ll~~~~~~~~~~---~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L 265 (329)
|+..|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 123 A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999999998765 77999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 266 l~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
+++|++++.+|..|.||+++|+..|+.++++.|.+++++
T Consensus 203 l~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS 241 (241)
T 1k1a_A 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241 (241)
T ss_dssp HHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred HhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence 999999999999999999999999999999999987653
No 11
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8e-38 Score=262.72 Aligned_cols=198 Identities=27% Similarity=0.312 Sum_probs=187.2
Q ss_pred cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 188 (329)
Q Consensus 109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 188 (329)
++..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence 34456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcC-CCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239 189 AIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265 (329)
Q Consensus 189 A~~~~~~~~v~~Ll~~~-~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L 265 (329)
|+..|+.+++++|++.+ .+++..+ +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999999999999998 6666544 67999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 306 (329)
Q Consensus 266 l~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~ 306 (329)
+++|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 204 (237)
T 3b7b_A 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204 (237)
T ss_dssp HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999998654
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.5e-38 Score=278.99 Aligned_cols=205 Identities=27% Similarity=0.321 Sum_probs=190.5
Q ss_pred ccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCC
Q 020239 104 DITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN 183 (329)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 183 (329)
......+..+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 46 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~ 125 (351)
T 3utm_A 46 PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125 (351)
T ss_dssp TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 33444556677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCcC----------------------------------------------------
Q 020239 184 TPLLEAIKCGHDGVTSLLVKEGASLNVD---------------------------------------------------- 211 (329)
Q Consensus 184 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~---------------------------------------------------- 211 (329)
||||+|+..|+.+++++|+++|++++..
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (351)
T 3utm_A 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence 9999999999999999999999887642
Q ss_pred ----CCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHH
Q 020239 212 ----DAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284 (329)
Q Consensus 212 ----~~~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~ 284 (329)
.+.||||+|+.. ++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~ 285 (351)
T 3utm_A 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285 (351)
T ss_dssp CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 356999999999 5589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccc
Q 020239 285 EGRMCGNKNLIKLLEDAKCTQLSE 308 (329)
Q Consensus 285 ~A~~~~~~~iv~~L~~~~~~~~~~ 308 (329)
+|+..|+.+++++|+++|++....
T Consensus 286 ~A~~~~~~~~v~~Ll~~gad~~~~ 309 (351)
T 3utm_A 286 RAALAGHLQTCRLLLSYGSDPSII 309 (351)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHcCcHHHHHHHHHcCCCCCCc
Confidence 999999999999999999975444
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=268.88 Aligned_cols=191 Identities=27% Similarity=0.295 Sum_probs=176.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 195 (329)
+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccC
Q 020239 196 GVTSLLVKEGASLNVDD-AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274 (329)
Q Consensus 196 ~~v~~Ll~~~~~~~~~~-~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~ 274 (329)
+++++|+++|++++..+ +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 83 ~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 162 (261)
T 2xai_A 83 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162 (261)
T ss_dssp HHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 99999999999887543 67999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239 275 KDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307 (329)
Q Consensus 275 ~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~ 307 (329)
+..|+||||+|+..|+.+++++|+++|++...
T Consensus 163 -~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 163 -GKGQDSPLHAVARTASEELACLLMDFGADTQA 194 (261)
T ss_dssp -CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred -CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 78899999999999999999999999886543
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=7.3e-39 Score=268.00 Aligned_cols=193 Identities=27% Similarity=0.384 Sum_probs=146.7
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 190 (329)
..+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 114 (231)
T 3aji_A 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 34555667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA 268 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 268 (329)
..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 115 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 7777777777777777766554 55777777777777777777777777777777777777777777777777777777
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
|++++.+|..|.||+++|+..++.+++++|.++|+
T Consensus 195 ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 195 GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 77777777777777777777777777777777665
No 15
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.5e-38 Score=266.37 Aligned_cols=193 Identities=20% Similarity=0.246 Sum_probs=180.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc-----cccCCCCCcHHHHH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----NIKDKFGNTPLLEA 189 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t~l~~A 189 (329)
+.||||.|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A 82 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence 46899999999999999999998 9999999999999999999999999999999999886 66677899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcC---------------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 020239 190 IKCGHDGVTSLLVKEGASLNVD---------------DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254 (329)
Q Consensus 190 ~~~~~~~~v~~Ll~~~~~~~~~---------------~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 254 (329)
+..|+.+++++|+++|++++.. .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162 (232)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 9999999999999999998876 4779999999999999999999999999999999999999999
Q ss_pred HhCcHHHH----HHHHHCCCCc------cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239 255 SEGLYLMA----KLLLEAGASV------FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE 308 (329)
Q Consensus 255 ~~~~~~iv----~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~ 308 (329)
..|+.+++ ++|+++|++. +.+|..|+||||+|+..|+.+++++|+++|+.....
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhh
Confidence 99999988 9999999988 588999999999999999999999999998765433
No 16
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=271.20 Aligned_cols=214 Identities=25% Similarity=0.266 Sum_probs=194.8
Q ss_pred CccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239 110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 189 (329)
Q Consensus 110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 189 (329)
...+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A 132 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA 132 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239 190 IKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA 268 (329)
Q Consensus 190 ~~~~~~~~v~~Ll~~~~~~~~~-~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 268 (329)
+..|+.+++++|++.|++++.. ++.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 133 ~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 133 CVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 9999999999999999988754 367999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------cccccchhHHHHHhhhc
Q 020239 269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-------FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~-------~~~~~~~~~~~~~~l~~ 325 (329)
|++++. +..|.||||+|+..|+.+++++|+++|++.... ...+. +..+++++|+.
T Consensus 213 ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~-~~~~~~~~Ll~ 274 (285)
T 3d9h_A 213 GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP-PESPLAQLFLE 274 (285)
T ss_dssp TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC-TTSHHHHHHHH
T ss_pred CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc-CccHHHHHHHH
Confidence 999995 889999999999999999999999998864332 22222 45677777764
No 17
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=8.2e-39 Score=276.40 Aligned_cols=214 Identities=21% Similarity=0.125 Sum_probs=196.7
Q ss_pred cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 188 (329)
Q Consensus 109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 188 (329)
.+..+..+.||||+|+..|+.+++++|++.|++++..+ |.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence 34567788899999999999999999999999998874 8999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCCC---CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239 189 AIKCGHDGVTSLLVKEGASLNVDDA---GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265 (329)
Q Consensus 189 A~~~~~~~~v~~Ll~~~~~~~~~~~---~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L 265 (329)
|+..|+.+++++|+++|++++..+. .||||+|+..|+.+++++|++.|++.... ..|.||||+|+..|+.+++++|
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence 9999999999999999999987664 69999999999999999999999876333 2899999999999999999999
Q ss_pred HHCCCCccCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCccc-cccccchhHHHHHhhhc
Q 020239 266 LEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 266 l~~g~~~~~~~~~g~t~-l~~A~~~~~~~iv~~L~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 325 (329)
+++|++++.+|..|+|| ||+|+..|+.+++++|+++|+..... ..++..++.+++++|+.
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIE 242 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGGGGTTTCHHHHHHHHH
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChhhhhcCCHHHHHHHHH
Confidence 99999999999999998 99999999999999999999976444 45567799999999974
No 18
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.1e-37 Score=261.97 Aligned_cols=185 Identities=28% Similarity=0.397 Sum_probs=175.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCC
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGH 194 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~ 194 (329)
+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+
T Consensus 44 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 123 (237)
T 3b7b_A 44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123 (237)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Confidence 348999999999999999999999999999999999999999999999999999998 8899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239 195 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272 (329)
Q Consensus 195 ~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~ 272 (329)
.+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 124 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 999999999999988765 679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239 273 FTKDRWGNTPLDEGRMCGNKNLIKLLED 300 (329)
Q Consensus 273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~ 300 (329)
+.+|..|.||+|+|+..++.+.+..+.+
T Consensus 204 ~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 204 TLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876665543
No 19
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.1e-37 Score=271.45 Aligned_cols=281 Identities=21% Similarity=0.229 Sum_probs=211.4
Q ss_pred hHHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhh
Q 020239 5 PAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF 84 (329)
Q Consensus 5 ~~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (329)
+..|+..|+.++|++||+.|++++..-...-+.+.. +.......+.+..++.....-.. ...........
T Consensus 29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh---~A~~~g~~~iv~~Ll~~ga~~~~-------~~~~~~~~~~~ 98 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH---NAVQMSREDIVELLLRHGADPVL-------RKKNGATPFIL 98 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH---HHHHTTCHHHHHHHHHTTCCTTC-------CCTTCCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH---HHHHcCCHHHHHHHHHcCCchhh-------hccCCCchhHH
Confidence 678999999999999999999987543221111110 11123345555555543221100 00111111111
Q ss_pred hhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCChHHH
Q 020239 85 VCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT----------DYDGRSPLH 154 (329)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~ 154 (329)
... ........... ......+..+..+.|||++|+..|+.+++++|++.|++++.. +..|.||||
T Consensus 99 ~~~---~~~~~~~~~~~--~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 99 AAI---AGSVKLLKLFL--SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp HHH---HTCHHHHHHHH--TTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred HHh---cccchhhHHhh--hccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence 111 11111111111 223334556777889999999999999999999999887643 456899999
Q ss_pred HHHHcCcHHHHHHHHh-cCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHH
Q 020239 155 LATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIKCGH----DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSD 227 (329)
Q Consensus 155 ~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~ 227 (329)
+|+..|+.+++++|++ .|++++.++..|.|+++.++..+. .+++++|+++|++++..+ +.||||+|+..|+.+
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~ 253 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 253 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhH
Confidence 9999999999999996 599999999999999998887654 358899999999998765 679999999999999
Q ss_pred HHHHHHHC-CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239 228 LLKRVLSN-GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 305 (329)
Q Consensus 228 ~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~ 305 (329)
+++.|++. |++++.+|.+|+||||+|+..|+.++|++|+++|++++.+ +||++|+..|+.++|++|+++|+..
T Consensus 254 ~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 254 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKE 327 (337)
T ss_dssp HHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 99999975 8999999999999999999999999999999999998754 5999999999999999999999965
No 20
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=265.78 Aligned_cols=185 Identities=25% Similarity=0.322 Sum_probs=172.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 195 (329)
+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.
T Consensus 36 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~ 114 (261)
T 2xai_A 36 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHV 114 (261)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcH
Confidence 448999999999999999999999999999999999999999999999999999999999854 4599999999999999
Q ss_pred HHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239 196 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273 (329)
Q Consensus 196 ~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 273 (329)
+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++. +..|.||||+|+..|+.+++++|+++|++++
T Consensus 115 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 115 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQ 193 (261)
T ss_dssp HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999988765 56999999999999999999999999995 8899999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 274 TKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 274 ~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
.+|..|+||+|+|+..+ +++++|++.+..
T Consensus 194 ~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~ 222 (261)
T 2xai_A 194 AKNAEGKRPVELVPPES--PLAQLFLEREGP 222 (261)
T ss_dssp CCCTTSCCGGGGSCTTC--THHHHHHHC-CC
T ss_pred CcCCCCCChhhhccccc--cHHHHHHhccCC
Confidence 99999999999999655 589999998653
No 21
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.6e-37 Score=257.05 Aligned_cols=210 Identities=29% Similarity=0.312 Sum_probs=191.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 194 (329)
..++|+.|+..|+.+.+++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 85 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX 85 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence 45889999999999999999988644 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239 195 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272 (329)
Q Consensus 195 ~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~ 272 (329)
.+++++|+++|++++..+ +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 165 (231)
T 3aji_A 86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165 (231)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence 999999999999988765 679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc--------ccccchhHHHHHhhhc
Q 020239 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENLLL 325 (329)
Q Consensus 273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l~~ 325 (329)
+.+|..|+||||+|+..|+.+++++|+++|++..... .+...++.+++++|+.
T Consensus 166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~ 226 (231)
T 3aji_A 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG 226 (231)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence 9999999999999999999999999999998653322 1234467777777753
No 22
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.8e-38 Score=279.23 Aligned_cols=190 Identities=21% Similarity=0.152 Sum_probs=122.8
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhc----CCCccc----------
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK----GVDINI---------- 177 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~---------- 177 (329)
.+..+.||||+|+..|+.+++++|++.|++++. ..|.||||+|+..|+.+++++|+++ |.+++.
T Consensus 49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 126 (364)
T 3ljn_A 49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREV 126 (364)
T ss_dssp CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCE
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhh
Confidence 344445555555555555555555555553322 2445555555555555555555555 444444
Q ss_pred -------cCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCC-----CCC
Q 020239 178 -------KDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVD-----PNS 241 (329)
Q Consensus 178 -------~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~-----~~~ 241 (329)
.+..|.||||+|+..| +.+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++ ++.
T Consensus 127 ~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~ 206 (364)
T 3ljn_A 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206 (364)
T ss_dssp EEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred hhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Confidence 5556777777777777 6777777777777666554 45777777777777777777776666 777
Q ss_pred CCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 242 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
.|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 268 (364)
T 3ljn_A 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268 (364)
T ss_dssp CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence 77777777777777777777777777777777777777777777777777777777777654
No 23
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.6e-37 Score=262.84 Aligned_cols=213 Identities=26% Similarity=0.281 Sum_probs=196.1
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 192 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 192 (329)
+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 115 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCcC------------CCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCchHHHHHHHhCc-
Q 020239 193 GHDGVTSLLVKEGASLNVD------------DAGSFLCIAVARGDSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGL- 258 (329)
Q Consensus 193 ~~~~~v~~Ll~~~~~~~~~------------~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~- 258 (329)
|+.+++++|++.|++++.. .+.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..++
T Consensus 116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 195 (285)
T 1wdy_A 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence 9999999999999998854 366999999999999999999987 99999999999999999999999
Q ss_pred ---HHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc--------cccccchhHHHHHhhhc
Q 020239 259 ---YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AKCTQLSE--------FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 259 ---~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~-~~~~~~~~--------~~~~~~~~~~~~~~l~~ 325 (329)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|+..... ..++..++.+++++|+.
T Consensus 196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 56543222 22345688999999874
No 24
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=267.66 Aligned_cols=188 Identities=24% Similarity=0.333 Sum_probs=174.0
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 192 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 192 (329)
+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~ 167 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR 167 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHc
Confidence 3445699999999999999999999999999999999999999999999999999999999988654 499999999999
Q ss_pred CCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCC
Q 020239 193 GHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270 (329)
Q Consensus 193 ~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~ 270 (329)
|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++. +..|.||||+|+..|+.+++++|+++|+
T Consensus 168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 246 (285)
T 3d9h_A 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA 246 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 99999999999999988764 66999999999999999999999999995 8899999999999999999999999999
Q ss_pred CccCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC
Q 020239 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-KCT 304 (329)
Q Consensus 271 ~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~-~~~ 304 (329)
+++.+|..|+|||++|+ ++.+++++|+++ +++
T Consensus 247 d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 247 DTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS 279 (285)
T ss_dssp CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred CCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence 99999999999999999 467999999998 544
No 25
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.8e-37 Score=251.45 Aligned_cols=187 Identities=26% Similarity=0.346 Sum_probs=177.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 194 (329)
..++|+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 4589999999999999999998875 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCchHHHHHHHhCc-----HHHHHHH
Q 020239 195 DGVTSLLV-KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGL-----YLMAKLL 265 (329)
Q Consensus 195 ~~~v~~Ll-~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-----~~iv~~L 265 (329)
.+++++|+ +.+.+++..+ +.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++ .+++++|
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~L 164 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHH
Confidence 99999999 5566776654 679999999999999999999998 9999999999999999999987 9999999
Q ss_pred HHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302 (329)
Q Consensus 266 l~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~ 302 (329)
+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 165 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999999999999999999999999999999886
No 26
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.1e-38 Score=280.37 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=138.2
Q ss_pred cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcC---CCccccCCCCCcH
Q 020239 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG---VDINIKDKFGNTP 185 (329)
Q Consensus 109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~ 185 (329)
.+..+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++++ ++++..+..|.||
T Consensus 159 vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~ 238 (373)
T 2fo1_E 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238 (373)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCH
Confidence 3444556667777777777777777777777777777777777777777777777777777765 5677777777777
Q ss_pred HHHHHHcC---CHHHHHHHHHcCCCCCcC----------CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCchHHH
Q 020239 186 LLEAIKCG---HDGVTSLLVKEGASLNVD----------DAGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLH 251 (329)
Q Consensus 186 l~~A~~~~---~~~~v~~Ll~~~~~~~~~----------~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~ 251 (329)
||+|+..+ +.+++++|++.|++++.. .+.||||+|+..|+.+++++|++.+ ++++.+|..|.||||
T Consensus 239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~ 318 (373)
T 2fo1_E 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318 (373)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence 77777766 667777777777766541 3557777777777777777777654 777777777777777
Q ss_pred HHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 252 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++++.
T Consensus 319 ~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 319 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 77777777777777777777777777777777777777777777777776653
No 27
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.2e-37 Score=266.53 Aligned_cols=178 Identities=26% Similarity=0.290 Sum_probs=155.0
Q ss_pred hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCC-------------------
Q 020239 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD------------------- 174 (329)
Q Consensus 114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------- 174 (329)
..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 122 (282)
T 1oy3_D 43 DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122 (282)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcc
Confidence 3455999999999999999999999999999999999999999999999999999998765
Q ss_pred ----------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CCcHHHHHHHc
Q 020239 175 ----------------------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVAR 223 (329)
Q Consensus 175 ----------------------------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~~~l~~A~~~ 223 (329)
++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred hhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc
Confidence 56678889999999999999999999999999999865 77999999999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239 224 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291 (329)
Q Consensus 224 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 291 (329)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.....
T Consensus 203 ~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred CCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999987654
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1e-36 Score=254.30 Aligned_cols=192 Identities=27% Similarity=0.316 Sum_probs=176.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcCcHHHHHHHHhcC--CCccc-cCCCCCcHHHHHHH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKG--VDINI-KDKFGNTPLLEAIK 191 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~l~~A~~ 191 (329)
+.||||.|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 4589999999999999999999987754 47899999999999999999999999999 55665 77889999999999
Q ss_pred cCCHHHHHHHHHcC--CCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239 192 CGHDGVTSLLVKEG--ASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267 (329)
Q Consensus 192 ~~~~~~v~~Ll~~~--~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~ 267 (329)
.|+.+++++|+++| ++++..+ +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 7766544 6799999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcc
Q 020239 268 AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLE-DAKCTQLS 307 (329)
Q Consensus 268 ~g-~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~-~~~~~~~~ 307 (329)
+| ++++.+|..|+||||+|+..|+.+++++|+ +.|++...
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~ 203 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence 99 999999999999999999999999999999 88876543
No 29
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.2e-36 Score=269.07 Aligned_cols=211 Identities=24% Similarity=0.245 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHcCCCCC---------------------------------CCCCCCChHHHHHHHcCc
Q 020239 115 ELALRFNSAAYHGDLYQLKGLIRAGADLN---------------------------------KTDYDGRSPLHLATSRGY 161 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~---------------------------------~~~~~g~t~L~~A~~~g~ 161 (329)
.+.||||+|+..|+.++|++|+++|++++ ..|..|.||+|+|+..|+
T Consensus 58 ~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~ 137 (337)
T 4g8k_A 58 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137 (337)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc
Confidence 35677777777777777777777776543 344556677777777777
Q ss_pred HHHHHHHHhcCCCcccc----------CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCC--CCcHHHHHHHcCC---
Q 020239 162 EDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLLVK-EGASLNVDD--AGSFLCIAVARGD--- 225 (329)
Q Consensus 162 ~~~v~~Ll~~g~~~~~~----------~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~--~~~~l~~A~~~g~--- 225 (329)
.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++ .|++++..+ +.++++.++..+.
T Consensus 138 ~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~ 217 (337)
T 4g8k_A 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 217 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT
T ss_pred HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc
Confidence 77777777777665533 3346777777777777777777774 467766654 4567766655433
Q ss_pred -HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 226 -SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 226 -~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++. |++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 297 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 3467777788888888999999999999999999999999984 89999999999999999999999999999999998
Q ss_pred CCccc---cccccchhHHHHHhhhc
Q 020239 304 TQLSE---FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 304 ~~~~~---~~~~~~~~~~~~~~l~~ 325 (329)
+.-.. ..++..++.++|++||.
T Consensus 298 d~n~~~~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 298 STDCGDLVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp SSTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 65332 23566789999999985
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=253.83 Aligned_cols=190 Identities=27% Similarity=0.305 Sum_probs=154.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 194 (329)
+.+|||.|+..|+.+++++|++.|.+++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 42 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 121 (240)
T 3eu9_A 42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121 (240)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCH
Confidence 4478888888888888888888888776554 448888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCC-HHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCcHHHHHHHHHCCC
Q 020239 195 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGD-SDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGA 270 (329)
Q Consensus 195 ~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~-~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~g~ 270 (329)
.+++++|+++|++++..+ +.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 122 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 888888888888777654 5588888886665 7888888888888888876 78888888888888888888888888
Q ss_pred CccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 305 (329)
Q Consensus 271 ~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~ 305 (329)
+++.+|..|.||+++|+..|+.+++++|+++++..
T Consensus 202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 88888888888888888888888888888887643
No 31
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.7e-38 Score=266.87 Aligned_cols=196 Identities=23% Similarity=0.227 Sum_probs=179.8
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 187 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 187 (329)
.+..+.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 83 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 45567799999999999999999998764 68999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCC------C--cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCc
Q 020239 188 EAIKCGHDGVTSLLVKEGASL------N--VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGL 258 (329)
Q Consensus 188 ~A~~~~~~~~v~~Ll~~~~~~------~--~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~ 258 (329)
+|+..|+.+++++|++.+.+. + ...+.||||+|+..|+.+++++|++.|++++.++. .|.||||+|+..|+
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~ 163 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 999999999999999998753 2 23477999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239 259 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307 (329)
Q Consensus 259 ~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~ 307 (329)
.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|+....
T Consensus 164 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 212 (236)
T 1ikn_D 164 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212 (236)
T ss_dssp HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred HHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh
Confidence 9999999999999999999999999999999999999999999997653
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-37 Score=262.08 Aligned_cols=195 Identities=24% Similarity=0.303 Sum_probs=155.6
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCC--------CCCCCCCCChHHHHHHHcCcH-HHHHHHHhcCCCccccCCCC
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGAD--------LNKTDYDGRSPLHLATSRGYE-DITLFLIQKGVDINIKDKFG 182 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g 182 (329)
.+....++|+.|+..|+.++|++|++.|.+ ++..+..|.|||+.|+..++. .++++|++.|+++|.+|..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 344567899999999999999999998865 455677899999999988765 48899999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHH
Q 020239 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 260 (329)
Q Consensus 183 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 260 (329)
.||||+|+..|+.+++++|++.+++++..+ +.||++.|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~ 166 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE 166 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 999999999999999999999999888765 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239 261 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 306 (329)
Q Consensus 261 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~ 306 (329)
++++|+++|++++.++..|+||||+|+..|+.++|++|+++|++..
T Consensus 167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~ 212 (269)
T 4b93_B 167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ 212 (269)
T ss_dssp GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999999999999998653
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.4e-37 Score=254.88 Aligned_cols=184 Identities=24% Similarity=0.211 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCChHHHHHHHcCcHHHHHHHHhcC--CCccccCCCCCcHHHHH
Q 020239 115 ELALRFNSAAYHGDLYQLKGLIRAG--ADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKG--VDINIKDKFGNTPLLEA 189 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A 189 (329)
.+.||||+|+..|+.+++++|++.| .+++. .+..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|
T Consensus 35 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A 114 (228)
T 2dzn_A 35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114 (228)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHH
Confidence 4459999999999999999999999 55555 7889999999999999999999999998 88999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCchHHHHHHHhCcHHHHHHHH
Q 020239 190 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266 (329)
Q Consensus 190 ~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll 266 (329)
+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus 115 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999988765 679999999999999999999999 999999999999999999999999999999
Q ss_pred -HCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239 267 -EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301 (329)
Q Consensus 267 -~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~ 301 (329)
++|++++.+|..|+||+++|+.. +++++|+++
T Consensus 195 ~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 195 EKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp HHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred HhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 89999999999999999999654 677777764
No 34
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.3e-37 Score=264.68 Aligned_cols=191 Identities=21% Similarity=0.152 Sum_probs=177.1
Q ss_pred hhHHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCChHHHHHHHc---CcHHHHHHHHhcCCCcccc------
Q 020239 116 LALRFNSAAYHGDLY----QLKGLIRAGADLNK----TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIK------ 178 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~----~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~------ 178 (329)
+.|+||.|+..|+.+ ++++|++.|++++. .|..|.||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 469999999999997 66777789999998 899999999999999 9999999999998776633
Q ss_pred -----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---------------CCcHHHHHHHcCCHHHHHHHHH---C
Q 020239 179 -----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---------------AGSFLCIAVARGDSDLLKRVLS---N 235 (329)
Q Consensus 179 -----~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------~~~~l~~A~~~g~~~~v~~Ll~---~ 235 (329)
|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++ .
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 3679999999999999999999999999998876 7799999999999999999999 9
Q ss_pred CCCCCCCCCCCchHHHHHHH--hCcHH-------HHHHHHHCCCCc-------cCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 020239 236 GVDPNSRDYDHRTPLHVAAS--EGLYL-------MAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE 299 (329)
Q Consensus 236 g~~~~~~~~~g~t~L~~A~~--~~~~~-------iv~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~iv~~L~ 299 (329)
|++++.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999 77888 999999999999 899999999999999999999999999
Q ss_pred HcCCCCc
Q 020239 300 DAKCTQL 306 (329)
Q Consensus 300 ~~~~~~~ 306 (329)
++|+...
T Consensus 242 ~~g~~~~ 248 (256)
T 2etb_A 242 QREFSGA 248 (256)
T ss_dssp HHHHHHH
T ss_pred hCCCCCC
Confidence 9987543
No 35
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.7e-36 Score=238.39 Aligned_cols=157 Identities=46% Similarity=0.656 Sum_probs=119.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 196 (329)
Q Consensus 117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 196 (329)
.++|+.|++.|+.++|++|++.|+++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 46789999999999999999999999999999999999999999999999999999999998888888888888777666
Q ss_pred HHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCC
Q 020239 197 VTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276 (329)
Q Consensus 197 ~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~ 276 (329)
++++|+++|+ +++.+|.+|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 85 ~v~~Ll~~ga-------------------------------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 133 (169)
T 4gpm_A 85 VVKLLISKGA-------------------------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133 (169)
T ss_dssp HHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHCcC-------------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 6666665554 555556666666666666666666666666666666666
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 277 RWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 277 ~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
..|+|||++|+..|+.+++++|+++|+.
T Consensus 134 ~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 134 SDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 6666666666666666666666666664
No 36
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=247.96 Aligned_cols=216 Identities=24% Similarity=0.252 Sum_probs=195.6
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC-CCCCcHHHHH
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEA 189 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A 189 (329)
..+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 345567789999999999999999999999999999999999999999999999999999999887555 4499999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCc-HHHHHHHH
Q 020239 190 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL-YLMAKLLL 266 (329)
Q Consensus 190 ~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~iv~~Ll 266 (329)
+..|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++ .+++++|+
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~ 163 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence 99999999999999999988754 5699999999999999999999999999999999999999997776 89999999
Q ss_pred HCCCCccCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhcC
Q 020239 267 EAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLLL 326 (329)
Q Consensus 267 ~~g~~~~~~~~-~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~ 326 (329)
+.|++++..+. .|.||||+|+..|+.+++++|+++|+..... ..+...++.+++++|+..
T Consensus 164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987 8999999999999999999999998865433 223566899999999753
No 37
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9e-37 Score=273.57 Aligned_cols=212 Identities=20% Similarity=0.201 Sum_probs=193.1
Q ss_pred hhhhHHHHHHHHcCCHHHHHHHH--------HcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcH
Q 020239 114 AELALRFNSAAYHGDLYQLKGLI--------RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 185 (329)
Q Consensus 114 ~~~~~~l~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 185 (329)
..+.||||+|+..|+.+++++|+ +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 202 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence 46789999999999998888876 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcC---CCCCcC--CCCcHHHHHHHcC---CHHHHHHHHHCCCCCCC--------CCCCCchH
Q 020239 186 LLEAIKCGHDGVTSLLVKEG---ASLNVD--DAGSFLCIAVARG---DSDLLKRVLSNGVDPNS--------RDYDHRTP 249 (329)
Q Consensus 186 l~~A~~~~~~~~v~~Ll~~~---~~~~~~--~~~~~l~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~~~g~t~ 249 (329)
||+|+..|+.+++++|++++ .+++.. .+.||||+|+..+ +.+++++|++.|++++. .|..|.||
T Consensus 203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~ 282 (373)
T 2fo1_E 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282 (373)
T ss_dssp HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence 99999999999999999986 566654 4779999999998 89999999999999886 67799999
Q ss_pred HHHHHHhCcHHHHHHHHHCC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHH
Q 020239 250 LHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIA 320 (329)
Q Consensus 250 L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~ 320 (329)
||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++|++|+++|+..... ..++..++.+++
T Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999875 999999999999999999999999999999999865432 224566899999
Q ss_pred Hhhhc
Q 020239 321 ENLLL 325 (329)
Q Consensus 321 ~~l~~ 325 (329)
++|+.
T Consensus 363 ~~Ll~ 367 (373)
T 2fo1_E 363 DIFDR 367 (373)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99975
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-36 Score=260.39 Aligned_cols=212 Identities=30% Similarity=0.416 Sum_probs=186.0
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 192 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 192 (329)
+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 116 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHH-CCCCC--------------------------CCCC
Q 020239 193 GHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS-NGVDP--------------------------NSRD 243 (329)
Q Consensus 193 ~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~-~g~~~--------------------------~~~~ 243 (329)
|+.+++++|+++|++++..+ +.||||+|+..++.+++++++. .+.++ ...+
T Consensus 117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (299)
T 1s70_B 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence 99999999999999888765 6799999999999999988774 24332 3356
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------cccccchh
Q 020239 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-------FHYCSQGM 316 (329)
Q Consensus 244 ~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~-------~~~~~~~~ 316 (329)
..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.... ...+..+.
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998864322 33344556
Q ss_pred HHHHHhhh
Q 020239 317 IGIAENLL 324 (329)
Q Consensus 317 ~~~~~~l~ 324 (329)
+++++.++
T Consensus 277 ~~~l~~l~ 284 (299)
T 1s70_B 277 LGYLEELQ 284 (299)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 39
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.2e-35 Score=236.04 Aligned_cols=144 Identities=35% Similarity=0.437 Sum_probs=115.8
Q ss_pred hHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHH
Q 020239 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK 230 (329)
Q Consensus 151 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~ 230 (329)
++|+.|++.|+.++|++|+++|++++.+|..|.||||+|+..+ +.++++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~-------------------------------~~~~~~ 54 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG-------------------------------HKEVVK 54 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-------------------------------CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-------------------------------CHHHHH
Confidence 3566777777777777777777777777666666666665554 455555
Q ss_pred HHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 020239 231 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH 310 (329)
Q Consensus 231 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~ 310 (329)
+|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++......
T Consensus 55 ~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 134 (169)
T 4gpm_A 55 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS 134 (169)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence 55666677788899999999999999999999999999999999999999999999999999999999999986543322
Q ss_pred --------cccchhHHHHHhhhc
Q 020239 311 --------YCSQGMIGIAENLLL 325 (329)
Q Consensus 311 --------~~~~~~~~~~~~l~~ 325 (329)
++..++.+++++|+.
T Consensus 135 ~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 135 DGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH
Confidence 356688999999875
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.5e-36 Score=249.14 Aligned_cols=201 Identities=25% Similarity=0.267 Sum_probs=181.2
Q ss_pred cCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239 126 HGDLYQLKGLIRAGADLNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE 204 (329)
Q Consensus 126 ~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 204 (329)
.|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 36788999999999998765 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCc
Q 020239 205 GA-SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281 (329)
Q Consensus 205 ~~-~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t 281 (329)
+. +++.. .+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 160 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence 76 55554 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhcC
Q 020239 282 PLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLLL 326 (329)
Q Consensus 282 ~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~ 326 (329)
|||+|+..|+.+++++|+++|+..... ..+...++.+++++|+.-
T Consensus 161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~ 213 (223)
T 2f8y_A 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence 999999999999999999998865332 124566899999999853
No 41
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.8e-35 Score=260.18 Aligned_cols=215 Identities=28% Similarity=0.326 Sum_probs=194.9
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 190 (329)
.+..+.++|+.|+..|+.+.++.|+.. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 455677999999999999999999975 8899999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------------------
Q 020239 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD------------------------- 243 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~------------------------- 243 (329)
..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++..+
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~ 179 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc
Confidence 9999999999999999998765 6699999999999999999999999987654
Q ss_pred -----------------------------CCCchHHHHHHHh---CcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239 244 -----------------------------YDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291 (329)
Q Consensus 244 -----------------------------~~g~t~L~~A~~~---~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 291 (329)
..|.||||+|+.. +..+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 259 (351)
T 3utm_A 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259 (351)
T ss_dssp HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCC
Confidence 5567899999998 66899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcccc--------ccccchhHHHHHhhhcC
Q 020239 292 KNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENLLLL 326 (329)
Q Consensus 292 ~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~ 326 (329)
.+++++|+++|+..-... .++..++.+++++|+..
T Consensus 260 ~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 302 (351)
T 3utm_A 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302 (351)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 999999999988653332 24566899999999863
No 42
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-36 Score=261.94 Aligned_cols=187 Identities=28% Similarity=0.389 Sum_probs=168.7
Q ss_pred hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193 (329)
Q Consensus 114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 193 (329)
..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 150 (299)
T 1s70_B 71 VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA 150 (299)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHc-CCCCCc----------------------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 020239 194 HDGVTSLLVKE-GASLNV----------------------------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY 244 (329)
Q Consensus 194 ~~~~v~~Ll~~-~~~~~~----------------------------~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 244 (329)
+.+++++++.. +.+++. ..+.||||+|+..|+.+++++|++.|++++.+|.
T Consensus 151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~ 230 (299)
T 1s70_B 151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230 (299)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence 99999887753 444321 3577999999999999999999999999999999
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239 245 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300 (329)
Q Consensus 245 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~ 300 (329)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+......+.+++.+
T Consensus 231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~ 286 (299)
T 1s70_B 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK 286 (299)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977544444444433
No 43
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.3e-36 Score=260.89 Aligned_cols=196 Identities=21% Similarity=0.206 Sum_probs=174.2
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCc----
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIR----AGADLN----KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI---- 175 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~----~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~---- 175 (329)
..+..+.++||.|+..|+.++|+.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 355567899999999999999998887 456665 4578999999999987 9999999999998652
Q ss_pred ---cc----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CCcHHHHHHHcCCHHHHHHH
Q 020239 176 ---NI----KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCIAVARGDSDLLKRV 232 (329)
Q Consensus 176 ---~~----~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~~~l~~A~~~g~~~~v~~L 232 (329)
+. .|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 22 56689999999999999999999999999998765 67999999999999999999
Q ss_pred HH---CCCCCCCCCCCCchHHHHHHHhCc---------HHHHHHHHHCCCCcc-------CCCCCCCcHHHHHHHcCCHH
Q 020239 233 LS---NGVDPNSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASVF-------TKDRWGNTPLDEGRMCGNKN 293 (329)
Q Consensus 233 l~---~g~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~~-------~~~~~g~t~l~~A~~~~~~~ 293 (329)
++ .|++++.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+.+
T Consensus 168 l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~ 247 (273)
T 2pnn_A 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247 (273)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence 99 999999999999999999999998 899999999999986 58999999999999999999
Q ss_pred HHHHHHHcCCCCc
Q 020239 294 LIKLLEDAKCTQL 306 (329)
Q Consensus 294 iv~~L~~~~~~~~ 306 (329)
++++|+++|+...
T Consensus 248 iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 248 VLAYILQREIHEP 260 (273)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHCCCCCc
Confidence 9999999999543
No 44
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-36 Score=263.02 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=173.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCC-CcHHHHHHHcCC
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG-NTPLLEAIKCGH 194 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~ 194 (329)
+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+
T Consensus 62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHcCCCCCcC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchH-HHHHHHhCcHHHHHHHHHCCCCc
Q 020239 195 DGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASV 272 (329)
Q Consensus 195 ~~~v~~Ll~~~~~~~~~-~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~iv~~Ll~~g~~~ 272 (329)
.+++++|+++|++.... .+.||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|+++|+++
T Consensus 142 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~ 221 (285)
T 3kea_A 142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221 (285)
T ss_dssp HHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred HHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999887555 67799999999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 306 (329)
Q Consensus 273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~ 306 (329)
+.+|. .|+..|+.+++++|+++|+...
T Consensus 222 ~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 222 YSANL-------ENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp TTTTG-------GGGTTTCHHHHHHHHHHHHHHT
T ss_pred CCCCh-------hhhhcCCHHHHHHHHHcCCCCC
Confidence 98873 5677999999999999987543
No 45
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=4e-36 Score=255.96 Aligned_cols=192 Identities=20% Similarity=0.169 Sum_probs=172.7
Q ss_pred hhhHHHHHHHHcCCHHHHHHHH----HcCCCCCCCC----CCCChHHHHHH---HcCcHHHHHHHHhcCCC---------
Q 020239 115 ELALRFNSAAYHGDLYQLKGLI----RAGADLNKTD----YDGRSPLHLAT---SRGYEDITLFLIQKGVD--------- 174 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~~v~~Ll----~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~--------- 174 (329)
.+.++|+.|+..|+.+.++.|+ +.|.+++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 3458999999999999655555 4899988665 77999999999 67999999999998743
Q ss_pred --ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CCcHHHHHHHcCCHHHHHHHHH--
Q 020239 175 --INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCIAVARGDSDLLKRVLS-- 234 (329)
Q Consensus 175 --~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~~~l~~A~~~g~~~~v~~Ll~-- 234 (329)
.+..|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 34445589999999999999999999999999999876 7799999999999999999999
Q ss_pred -CCCCCCCCCCCCchHHHHHHHhCc---------HHHHHHHHHCCCCc-------cCCCCCCCcHHHHHHHcCCHHHHHH
Q 020239 235 -NGVDPNSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKL 297 (329)
Q Consensus 235 -~g~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~iv~~ 297 (329)
.|++++.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 243 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999999887 79999999999998 6799999999999999999999999
Q ss_pred HHHcCCCCc
Q 020239 298 LEDAKCTQL 306 (329)
Q Consensus 298 L~~~~~~~~ 306 (329)
|+++|+...
T Consensus 244 Ll~~g~~~~ 252 (260)
T 3jxi_A 244 IIRREIADA 252 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHhCCCcc
Confidence 999987543
No 46
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-35 Score=265.42 Aligned_cols=189 Identities=22% Similarity=0.274 Sum_probs=172.2
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCChHHHHHHHcC--cHHHHHHHHhc
Q 020239 115 ELALRFNSAAYHGDLYQLKGLIRA----GADLNK-----------------TDYDGRSPLHLATSRG--YEDITLFLIQK 171 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ 171 (329)
.+.||||+|+..|+.+++++|++. |.+++. .+..|.||||+|+..| +.+++++|+++
T Consensus 83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ 162 (364)
T 3ljn_A 83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162 (364)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence 456999999999999999999998 777766 7888999999999999 99999999999
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 020239 172 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-----LNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY 244 (329)
Q Consensus 172 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 244 (329)
|++++..|..|.||||+|+..|+.+++++|++.|++ ++..+ +.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~ 242 (364)
T 3ljn_A 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN 242 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999999999888 76654 67999999999999999999999999999999
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHCCCCccC------------CCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 245 DHRTPLHVAASEGLYLMAKLLLEAGASVFT------------KDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 245 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~------------~~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
.|.||||+|+..|+.+++++|+++|++++. .+..|+||++.|+..|+.+.+..|++.+.
T Consensus 243 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~ 313 (364)
T 3ljn_A 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313 (364)
T ss_dssp TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence 999999999999999999999999876532 45578999999999998887777776643
No 47
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=246.35 Aligned_cols=186 Identities=22% Similarity=0.277 Sum_probs=175.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-CccccCCCCCcHHHHHH----
Q 020239 118 LRFNSAAYHGDLYQLKGLIRAGAD--LNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI---- 190 (329)
Q Consensus 118 ~~l~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~---- 190 (329)
+++|.|+..|+.+.++.+++.+.+ +|.+|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 567889999999999999988766 88899999999999999999999999999998 99999999999999999
Q ss_pred -HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239 191 -KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267 (329)
Q Consensus 191 -~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~ 267 (329)
..++.+++++|++.|...+..+ +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 6688999999999998777654 6799999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 268 -AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 268 -~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
.|++++.+|..|+|||++|+..|+.+++++|+++..
T Consensus 238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 899999999999999999999999999999998864
No 48
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=3.5e-33 Score=226.98 Aligned_cols=160 Identities=29% Similarity=0.394 Sum_probs=138.6
Q ss_pred CCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHH
Q 020239 143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIA 220 (329)
Q Consensus 143 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A 220 (329)
|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+ +.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 4567777888888888888888888888877777777778888888888888888888888877776654 56788888
Q ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239 221 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300 (329)
Q Consensus 221 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~ 300 (329)
+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 020239 301 AK 302 (329)
Q Consensus 301 ~~ 302 (329)
++
T Consensus 189 ~~ 190 (192)
T 2rfm_A 189 VR 190 (192)
T ss_dssp HH
T ss_pred cc
Confidence 75
No 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.2e-34 Score=239.98 Aligned_cols=178 Identities=22% Similarity=0.250 Sum_probs=163.3
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCC------ccccCCCCCcH
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD------INIKDKFGNTP 185 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~ 185 (329)
.+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|.+ ++..+..|.||
T Consensus 41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~ 120 (236)
T 1ikn_D 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCH
Confidence 444567999999999999999999999999999999999999999999999999999999876 46778889999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcC---CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHH
Q 020239 186 LLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA 262 (329)
Q Consensus 186 l~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv 262 (329)
||+|+..|+.+++++|+++|++++.. .+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus 121 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~ 200 (236)
T 1ikn_D 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ 200 (236)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHH
Confidence 99999999999999999999999876 457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcc--CCCCCCCcHHHHHHHc
Q 020239 263 KLLLEAGASVF--TKDRWGNTPLDEGRMC 289 (329)
Q Consensus 263 ~~Ll~~g~~~~--~~~~~g~t~l~~A~~~ 289 (329)
++|+++|++.. .++..|.||.+.+...
T Consensus 201 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 201 QQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 99999999876 7788899988765543
No 50
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=2.3e-32 Score=217.60 Aligned_cols=159 Identities=35% Similarity=0.527 Sum_probs=126.2
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 192 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 192 (329)
.....++|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 33456778888888888888888888888888888888888888888888888888888888877777777777666665
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239 193 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272 (329)
Q Consensus 193 ~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~ 272 (329)
|+.+++++ |+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 91 ~~~~~~~~-------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 139 (169)
T 2y1l_E 91 GHLEIVEV-------------------------------LLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139 (169)
T ss_dssp TCHHHHHH-------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCHHHHHH-------------------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 55555554 45555666777888889999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302 (329)
Q Consensus 273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~ 302 (329)
+.+|..|.||+++|+..|+.+++++|++.|
T Consensus 140 ~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 140 NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 888889999999999999999999998765
No 51
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-33 Score=248.70 Aligned_cols=176 Identities=20% Similarity=0.175 Sum_probs=141.1
Q ss_pred cccCc-cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCc---HHHHHHHHhcC-CCccccCCC
Q 020239 107 FHIGK-HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY---EDITLFLIQKG-VDINIKDKF 181 (329)
Q Consensus 107 ~~~~~-~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~ 181 (329)
..++. .+..+.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+ .++++.|++++ .+++.+|..
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~ 200 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence 34444 56678899999999999999999999999999899999999999999888 67778887775 678888888
Q ss_pred CCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHC
Q 020239 182 GNTPLLEAIK----CGHDGVTSLLVKE--------------------GASLNVDD--AGSFLCIAVARGDSDLLKRVLSN 235 (329)
Q Consensus 182 g~t~l~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~ 235 (329)
|.||||+|+. .|+.+++++|++. |++++..+ +.||||.|+. +++|++.
T Consensus 201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~ 274 (327)
T 1sw6_A 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN 274 (327)
T ss_dssp CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence 9999999998 8888999999876 66666554 5688998885 8888887
Q ss_pred CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcC
Q 020239 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 290 (329)
Q Consensus 236 g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 290 (329)
+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|
T Consensus 275 --~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 275 --MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp --TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred --CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 58888889999999999999999999999999999999999999999988764
No 52
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.2e-32 Score=228.75 Aligned_cols=178 Identities=24% Similarity=0.256 Sum_probs=161.0
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----c--CCCCcHHHH
Q 020239 148 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-----V--DDAGSFLCI 219 (329)
Q Consensus 148 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~-----~--~~~~~~l~~ 219 (329)
.|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|+++. . ..+.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 488999999999999999999998 99999999999999999999999999999999988762 2 257799999
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCCCC-------------CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHH
Q 020239 220 AVARGDSDLLKRVLSNGVDPNSRDY-------------DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 286 (329)
Q Consensus 220 A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A 286 (329)
|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999998765 799999999999999999999999999999999999999999
Q ss_pred HHcCCHHHH----HHHHHcCCCCc------cc--------cccccchhHHHHHhhhc
Q 020239 287 RMCGNKNLI----KLLEDAKCTQL------SE--------FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 287 ~~~~~~~iv----~~L~~~~~~~~------~~--------~~~~~~~~~~~~~~l~~ 325 (329)
+..|+.+++ ++|+++|+... .. ..++..++.+++++|+.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999988 99999988542 11 22355688999999874
No 53
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=1.7e-32 Score=217.85 Aligned_cols=158 Identities=28% Similarity=0.390 Sum_probs=111.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 196 (329)
Q Consensus 117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 196 (329)
.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~--------- 74 (167)
T 3v31_A 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALS--------- 74 (167)
T ss_dssp CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH---------
T ss_pred cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHH---------
Confidence 35555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCC
Q 020239 197 VTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276 (329)
Q Consensus 197 ~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~ 276 (329)
+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 75 ----------------------~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 132 (167)
T 3v31_A 75 ----------------------LACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132 (167)
T ss_dssp ----------------------HHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred ----------------------HHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 5555555556666666667777888889999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239 277 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 305 (329)
Q Consensus 277 ~~g~t~l~~A~~~~~~~iv~~L~~~~~~~ 305 (329)
..|.||+++|+..|+.+++++|++++...
T Consensus 133 ~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 133 DSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999998886643
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=1.2e-32 Score=219.86 Aligned_cols=164 Identities=26% Similarity=0.343 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239 118 LRFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 196 (329)
Q Consensus 118 ~~l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 196 (329)
++||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 83 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD 83 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence 567777777777777777777655 6666777777777777777777777777777777777777777777776666666
Q ss_pred HHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccC
Q 020239 197 VTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274 (329)
Q Consensus 197 ~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~ 274 (329)
++++|+++|++++..+ +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++...
T Consensus 84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163 (172)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence 6666666555544332 33444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCCCc
Q 020239 275 KDRWGNT 281 (329)
Q Consensus 275 ~~~~g~t 281 (329)
++..|.|
T Consensus 164 ~~~~~~~ 170 (172)
T 3v30_A 164 SNLVPAD 170 (172)
T ss_dssp C------
T ss_pred ccCCCCC
Confidence 4444443
No 55
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=2.5e-32 Score=215.61 Aligned_cols=157 Identities=29% Similarity=0.431 Sum_probs=117.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 195 (329)
..++|+.|+..|+.+++++|++.|++++.++..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3467777777777777777777777777777777777777777 777777777777777777666666666666655554
Q ss_pred HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC-ccC
Q 020239 196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFT 274 (329)
Q Consensus 196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~-~~~ 274 (329)
+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 84 -------------------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 132 (162)
T 1ihb_A 84 -------------------------------DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132 (162)
T ss_dssp -------------------------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred -------------------------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC
Confidence 455555555666777778888888888888888888888888887 488
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 275 KDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 275 ~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
+|..|.||||+|+..|+.+++++|+++|++
T Consensus 133 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 133 RNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 888888888888888888888888888863
No 56
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=5.5e-32 Score=213.67 Aligned_cols=146 Identities=25% Similarity=0.271 Sum_probs=118.8
Q ss_pred chhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 020239 93 ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG 172 (329)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 172 (329)
........+... ...+..+..+.||||.|+. |+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus 17 ~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 93 (162)
T 1ihb_A 17 DLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93 (162)
T ss_dssp CHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 333333344333 3445567788999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHH
Q 020239 173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHV 252 (329)
Q Consensus 173 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 252 (329)
++++.+|..|.||||+|+..|+.+++++|+++|++. ++.++..|.||||+
T Consensus 94 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------~~~~~~~g~t~l~~ 143 (162)
T 1ihb_A 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------------VGHRNHKGDTACDL 143 (162)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------TTCCCTTSCCHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------------------------------CCCcCCCCCcHHHH
Confidence 999999999999999988888887777777766542 35567778888888
Q ss_pred HHHhCcHHHHHHHHHCCCC
Q 020239 253 AASEGLYLMAKLLLEAGAS 271 (329)
Q Consensus 253 A~~~~~~~iv~~Ll~~g~~ 271 (329)
|+..|+.+++++|+++|+|
T Consensus 144 A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 144 ARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHTTCHHHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHhCCC
Confidence 8888888888888888775
No 57
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-31 Score=207.89 Aligned_cols=151 Identities=33% Similarity=0.462 Sum_probs=124.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 195 (329)
..++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 3578888888888888888888887765 467788888888888888888888888888887777777777777665555
Q ss_pred HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCC
Q 020239 196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275 (329)
Q Consensus 196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~ 275 (329)
+++++| +++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 81 ~~v~~L-------------------------------l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 129 (153)
T 1awc_B 81 NIVEVL-------------------------------LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129 (153)
T ss_dssp HHHHHH-------------------------------HTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHH-------------------------------HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 555555 4555566777888999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHH
Q 020239 276 DRWGNTPLDEGRMCGNKNLIKLL 298 (329)
Q Consensus 276 ~~~g~t~l~~A~~~~~~~iv~~L 298 (329)
|..|.||+++|+..|+.+++++|
T Consensus 130 ~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 130 SKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999987
No 58
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=1.6e-32 Score=235.46 Aligned_cols=172 Identities=20% Similarity=0.276 Sum_probs=144.2
Q ss_pred chhhhHHHHHHHHc---CCHHHHHHHHHcCCCC-------C----CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccc
Q 020239 113 EAELALRFNSAAYH---GDLYQLKGLIRAGADL-------N----KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178 (329)
Q Consensus 113 ~~~~~~~l~~A~~~---g~~~~v~~Ll~~~~~~-------~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 178 (329)
+..+.||||+|+.. |+.+++++|++.|+++ + ..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~ 130 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA 130 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence 34456999999987 9999999999987542 2 25678999999999999999999999999999998
Q ss_pred CC--------------CCCcHHHHHHHcCCHHHHHHHHH---cCCCCCcCC--CCcHHHHHHHcCC---------HHHHH
Q 020239 179 DK--------------FGNTPLLEAIKCGHDGVTSLLVK---EGASLNVDD--AGSFLCIAVARGD---------SDLLK 230 (329)
Q Consensus 179 ~~--------------~g~t~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~--~~~~l~~A~~~g~---------~~~v~ 230 (329)
+. .|.||||+|+..|+.+++++|++ .|++++..+ +.||||+|+..|+ .++++
T Consensus 131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~ 210 (273)
T 2pnn_A 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210 (273)
T ss_dssp BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHH
Confidence 87 79999999999999999999999 899998765 6799999999998 89999
Q ss_pred HHHHCCCCCC-------CCCCCCchHHHHHHHhCcHHHHHHHHHCCC-CccCCCCCCCcHHH
Q 020239 231 RVLSNGVDPN-------SRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKDRWGNTPLD 284 (329)
Q Consensus 231 ~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~t~l~ 284 (329)
+|++.|++++ .+|..|+||||+|+..|+.+++++|+++|+ |+......+.+|-+
T Consensus 211 ~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 9999999987 489999999999999999999999999999 88777777766643
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.98 E-value=1.2e-31 Score=214.03 Aligned_cols=160 Identities=26% Similarity=0.308 Sum_probs=150.2
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCC
Q 020239 149 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGD 225 (329)
Q Consensus 149 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~ 225 (329)
+.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 45899999999999999999999877 88889999999999999999999999999999988754 6799999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239 226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 305 (329)
Q Consensus 226 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~ 305 (329)
.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++++..
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ccc
Q 020239 306 LSE 308 (329)
Q Consensus 306 ~~~ 308 (329)
...
T Consensus 162 ~~~ 164 (172)
T 3v30_A 162 FQS 164 (172)
T ss_dssp SCC
T ss_pred hcc
Confidence 444
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.98 E-value=1.5e-31 Score=212.37 Aligned_cols=134 Identities=28% Similarity=0.363 Sum_probs=114.4
Q ss_pred ccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239 108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 187 (329)
Q Consensus 108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 187 (329)
..+..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 107 (167)
T 3v31_A 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107 (167)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHH
Confidence 35556778899999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239 188 EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267 (329)
Q Consensus 188 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~ 267 (329)
+|+..|+.+++++|++ +|++++.++..|.||||+|+..|+.+++++|++
T Consensus 108 ~A~~~~~~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 108 YAVHGNHVKCVKMLLE-------------------------------SGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHHHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-------------------------------cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 8877666666555555 455666677788888888888888888888888
Q ss_pred CCCCc
Q 020239 268 AGASV 272 (329)
Q Consensus 268 ~g~~~ 272 (329)
++.+.
T Consensus 157 ~~~~~ 161 (167)
T 3v31_A 157 HLLKL 161 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.98 E-value=8.6e-32 Score=218.72 Aligned_cols=161 Identities=25% Similarity=0.290 Sum_probs=153.5
Q ss_pred cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 188 (329)
Q Consensus 109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 188 (329)
.+..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHH
Q 020239 189 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266 (329)
Q Consensus 189 A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll 266 (329)
|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 999999999999999999998765 679999999999999999999999999999999999999999999999999999
Q ss_pred HCC
Q 020239 267 EAG 269 (329)
Q Consensus 267 ~~g 269 (329)
++|
T Consensus 188 ~~~ 190 (192)
T 2rfm_A 188 EVR 190 (192)
T ss_dssp HHH
T ss_pred hcc
Confidence 864
No 62
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=2.6e-31 Score=210.55 Aligned_cols=159 Identities=33% Similarity=0.459 Sum_probs=122.0
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 191 (329)
+..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 34556777777777777777777763 45566666677777777777777777777777777777777666666666665
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239 192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271 (329)
Q Consensus 192 ~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~ 271 (329)
.|+ .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~-------------------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 85 YGH-------------------------------YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp TTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCc-------------------------------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 554 5555555556667777888899999999999999999999999999
Q ss_pred ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 272 ~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
++.+|..|.||+++|+. ++.+++++|+++|+
T Consensus 134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 99999999999999776 89999999998875
No 63
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=9.3e-31 Score=213.95 Aligned_cols=162 Identities=25% Similarity=0.411 Sum_probs=151.6
Q ss_pred ccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH-hcCCCccccCCCCCcHH
Q 020239 108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPL 186 (329)
Q Consensus 108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~l 186 (329)
..+..+..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+ ..+.+++..+..|.|||
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L 110 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH
Confidence 34455667889999999999999999999999999999999999999999999999999999 56779999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcC-CCCCcCC--CCcHHHHHHHcCC-----HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCc
Q 020239 187 LEAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCIAVARGD-----SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258 (329)
Q Consensus 187 ~~A~~~~~~~~v~~Ll~~~-~~~~~~~--~~~~l~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 258 (329)
|+|+..|+.+++++|++.| .+++..+ +.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence 9999999999999999998 7777655 6799999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHCC
Q 020239 259 YLMAKLLLEAG 269 (329)
Q Consensus 259 ~~iv~~Ll~~g 269 (329)
.+++++|+++|
T Consensus 191 ~~~~~~Ll~~G 201 (201)
T 3hra_A 191 TEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHTCC
T ss_pred HhHHHHHHhcC
Confidence 99999999886
No 64
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=8.1e-32 Score=228.84 Aligned_cols=178 Identities=23% Similarity=0.217 Sum_probs=158.8
Q ss_pred CCChHHHHHHHcCcHH----HHHHHHhcCCCccc----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCc------
Q 020239 148 DGRSPLHLATSRGYED----ITLFLIQKGVDINI----KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNV------ 210 (329)
Q Consensus 148 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~------ 210 (329)
.|.||||.|+..|+.+ ++++|+++|++++. .|..|.||||+|+.. |+.+++++|++.|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4789999999999997 66777789999998 899999999999999 999999999999877653
Q ss_pred -------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CchHHHHHHHhCcHHHHHHHHH---
Q 020239 211 -------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-------------HRTPLHVAASEGLYLMAKLLLE--- 267 (329)
Q Consensus 211 -------~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~~~~~iv~~Ll~--- 267 (329)
..+.||||+|+..|+.+++++|++.|++++.++.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 34789999999999999999999999999999886 9999999999999999999999
Q ss_pred CCCCccCCCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------ccc--------cccccchhHHHHHhh
Q 020239 268 AGASVFTKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAKCTQ-------LSE--------FHYCSQGMIGIAENL 323 (329)
Q Consensus 268 ~g~~~~~~~~~g~t~l~~A~~--~~~~~-------iv~~L~~~~~~~-------~~~--------~~~~~~~~~~~~~~l 323 (329)
+|++++.+|..|+||||+|+. .++.+ ++++|+++|+.. ... ..++..++.+++++|
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999 88888 999999987754 111 224566899999998
Q ss_pred hc
Q 020239 324 LL 325 (329)
Q Consensus 324 ~~ 325 (329)
+.
T Consensus 241 l~ 242 (256)
T 2etb_A 241 LQ 242 (256)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=7.6e-31 Score=210.74 Aligned_cols=159 Identities=26% Similarity=0.328 Sum_probs=104.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 194 (329)
..++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 44667777777777777777776 45677777777777777777777777777777777777777777777777666666
Q ss_pred HHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccC
Q 020239 195 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274 (329)
Q Consensus 195 ~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~ 274 (329)
.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 85 ~~~v~~Ll~~g~-------------------------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 133 (179)
T 3f6q_A 85 RDIVQKLLQYKA-------------------------------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133 (179)
T ss_dssp HHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred HHHHHHHHHcCC-------------------------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence 666665555554 4555555555666666666666666666666666655
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239 275 KDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 305 (329)
Q Consensus 275 ~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~ 305 (329)
+|..|.||+++|+..++.+++++|+++|+..
T Consensus 134 ~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~ 164 (179)
T 3f6q_A 134 CNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164 (179)
T ss_dssp CCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred hccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence 5555666666665555556666666555543
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.1e-30 Score=209.70 Aligned_cols=146 Identities=21% Similarity=0.179 Sum_probs=110.1
Q ss_pred CChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHH
Q 020239 149 GRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSD 227 (329)
Q Consensus 149 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~ 227 (329)
+.++||.|+..|+.+++++|++. +.+++..+..|.||||+| +..|+.+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-------------------------------~~~~~~~ 53 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA-------------------------------CREGRSA 53 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH-------------------------------HHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH-------------------------------HHcCcHH
Confidence 44556666666666666666655 444555555555555554 5555566
Q ss_pred HHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239 228 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307 (329)
Q Consensus 228 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~ 307 (329)
++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+....
T Consensus 54 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 133 (179)
T 3f6q_A 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133 (179)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence 66666666777788889999999999999999999999999999999999999999999999999999999999886532
Q ss_pred c--------cccccchhHHHHHhhhc
Q 020239 308 E--------FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 308 ~--------~~~~~~~~~~~~~~l~~ 325 (329)
. ..+...+..+++++|+.
T Consensus 134 ~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 134 CNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp CCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 2 22345578888888875
No 67
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=3.9e-30 Score=201.74 Aligned_cols=152 Identities=25% Similarity=0.416 Sum_probs=122.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239 117 ALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195 (329)
Q Consensus 117 ~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 195 (329)
.++|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 4778888888888888888877 34777778888888888 778888888888888888887777777777766665555
Q ss_pred HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCC
Q 020239 196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275 (329)
Q Consensus 196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~ 275 (329)
+++++| ++.|++++.+|..|.||||+|+..|+.+++++|+++ ++++.+
T Consensus 82 ~~v~~L-------------------------------l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~ 129 (156)
T 1bd8_A 82 DTLKVL-------------------------------VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR 129 (156)
T ss_dssp HHHHHH-------------------------------HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC
T ss_pred HHHHHH-------------------------------HHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc
Confidence 555544 555566777788899999999999999999999988 889999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239 276 DRWGNTPLDEGRMCGNKNLIKLLEDA 301 (329)
Q Consensus 276 ~~~g~t~l~~A~~~~~~~iv~~L~~~ 301 (329)
|..|.|||++|+..|+.+++++|+++
T Consensus 130 ~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 130 DARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999875
No 68
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.5e-34 Score=238.10 Aligned_cols=185 Identities=21% Similarity=0.210 Sum_probs=169.8
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 190 (329)
..+..+.++|+.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~ 95 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcC---CCCcHHHHH--HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239 191 KCGHDGVTSLLVKEGASLNVD---DAGSFLCIA--VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~---~~~~~l~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L 265 (329)
..|+.+++++|++.|++++.. ++.||||+| +..|+.+++++|++.|++++..+..|.||++.++..+ ..++|
T Consensus 96 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~l 172 (229)
T 2vge_A 96 SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELS 172 (229)
T ss_dssp HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCC
T ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccC
Confidence 999999999999999999875 577999999 9999999999999999999999999999998655544 33678
Q ss_pred HHCCCC--ccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239 266 LEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLL 298 (329)
Q Consensus 266 l~~g~~--~~~~~~~g~t~l~~A~~~~~~~iv~~L 298 (329)
++.|++ ++.+|..|+||||+|+..|+.++|+.+
T Consensus 173 l~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp BCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred ccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 889988 678899999999999999999998753
No 69
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=9.5e-31 Score=230.24 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=151.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC--
Q 020239 118 LRFNSAAYHGDLYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-- 194 (329)
Q Consensus 118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-- 194 (329)
..++.|+..+..+++++|++.|+++|. +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence 446788888888999999999999999 89999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHcC-CCCCcC--CCCcHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 020239 195 -DGVTSLLVKEG-ASLNVD--DAGSFLCIAVA----RGDSDLLKRVLSN--------------------GVDPNSRDYDH 246 (329)
Q Consensus 195 -~~~v~~Ll~~~-~~~~~~--~~~~~l~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~~~~g 246 (329)
.++++.|++.+ .+++.. .+.||||+|+. .|+.+++++|++. |++++.++..|
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 67788888775 455544 47799999999 9999999999986 89999999999
Q ss_pred chHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239 247 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE 308 (329)
Q Consensus 247 ~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~ 308 (329)
.||||+|+. +++|+++ +++.+|..|+||||+|+..|+.++|++|+++|+.....
T Consensus 259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~ 312 (327)
T 1sw6_A 259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312 (327)
T ss_dssp -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 999999985 8999998 58889999999999999999999999999999975443
No 70
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=9e-31 Score=220.20 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=134.1
Q ss_pred hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193 (329)
Q Consensus 114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 193 (329)
..+.|||+.|++.|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 34679999999999999999999999998754 77899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCc-hHHHHH--HHhCcHHHHHHHHHC
Q 020239 194 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR-TPLHVA--ASEGLYLMAKLLLEA 268 (329)
Q Consensus 194 ~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A--~~~~~~~iv~~Ll~~ 268 (329)
+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 9999999999999988765 66999999999999999999999999999998777 999999 788899999999999
Q ss_pred CCCccCC---------CCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 269 GASVFTK---------DRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 269 g~~~~~~---------~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
|++++.. +..+.++.++|...|. +++.|.+.+.
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~ 203 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDE 203 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTT
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCC
Confidence 8887665 5567888888888776 4555544443
No 71
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=215.35 Aligned_cols=161 Identities=22% Similarity=0.293 Sum_probs=152.1
Q ss_pred cCccchhhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHH-----HcCcHHHHHHHHhcCCCccccCCCC
Q 020239 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLAT-----SRGYEDITLFLIQKGVDINIKDKFG 182 (329)
Q Consensus 109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g 182 (329)
.+..+..+.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+ ..++.+++++|++.|...+..+..|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g 183 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG 183 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence 45567788999999999999999999999998 99999999999999999 6689999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCchHHHHHHHhCcH
Q 020239 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLY 259 (329)
Q Consensus 183 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~ 259 (329)
.||||+|+..|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.
T Consensus 184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~ 263 (276)
T 4hbd_A 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS 263 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence 999999999999999999999999998765 6799999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHCC
Q 020239 260 LMAKLLLEAG 269 (329)
Q Consensus 260 ~iv~~Ll~~g 269 (329)
+++++|++++
T Consensus 264 ~iv~~Ll~~~ 273 (276)
T 4hbd_A 264 EIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcc
Confidence 9999999864
No 72
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=9e-30 Score=216.64 Aligned_cols=180 Identities=22% Similarity=0.259 Sum_probs=155.3
Q ss_pred CCCCChHHHHHHHcCcHHHHH----HHHhcCCCccccC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC-------
Q 020239 146 DYDGRSPLHLATSRGYEDITL----FLIQKGVDINIKD----KFGNTPLLEAI---KCGHDGVTSLLVKEGAS------- 207 (329)
Q Consensus 146 ~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~----~~g~t~l~~A~---~~~~~~~v~~Ll~~~~~------- 207 (329)
+..+.|+||.|+..|+.+.++ +|.+.|.+++..+ ..|.||||+|+ +.|+.+++++|++.|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 457889999999999999544 5555899988665 67999999999 67999999999998743
Q ss_pred ----CCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCchHHHHHHHhCcHHHHHHHHH
Q 020239 208 ----LNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD--------------YDHRTPLHVAASEGLYLMAKLLLE 267 (329)
Q Consensus 208 ----~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~iv~~Ll~ 267 (329)
.+.. .+.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2222 57799999999999999999999999999998 689999999999999999999999
Q ss_pred ---CCCCccCCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCc---------cc------cccccchhHHHH
Q 020239 268 ---AGASVFTKDRWGNTPLDEGRMCGN---------KNLIKLLEDAKCTQL---------SE------FHYCSQGMIGIA 320 (329)
Q Consensus 268 ---~g~~~~~~~~~g~t~l~~A~~~~~---------~~iv~~L~~~~~~~~---------~~------~~~~~~~~~~~~ 320 (329)
+|++++.+|..|+||||+|+..++ .+++++|+++|+... .. ..++..|+.+++
T Consensus 162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 241 (260)
T 3jxi_A 162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241 (260)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence 999999999999999999999888 799999999977541 11 224567899999
Q ss_pred Hhhhc
Q 020239 321 ENLLL 325 (329)
Q Consensus 321 ~~l~~ 325 (329)
++|+.
T Consensus 242 ~~Ll~ 246 (260)
T 3jxi_A 242 QHIIR 246 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.5e-29 Score=212.75 Aligned_cols=158 Identities=23% Similarity=0.245 Sum_probs=117.7
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcC
Q 020239 147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARG 224 (329)
Q Consensus 147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g 224 (329)
..|.||||.|+..++.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+ +.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 46899999999999999999999999999865 678999999999999999999999999888765 679999999999
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCC-cHHHHH--HHcCCHHHHHHHHHc
Q 020239 225 DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEG--RMCGNKNLIKLLEDA 301 (329)
Q Consensus 225 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~l~~A--~~~~~~~iv~~L~~~ 301 (329)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||+|+| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998887 999999 888999999999998
Q ss_pred CCCC
Q 020239 302 KCTQ 305 (329)
Q Consensus 302 ~~~~ 305 (329)
|+..
T Consensus 162 ~a~~ 165 (239)
T 1ycs_B 162 QEKM 165 (239)
T ss_dssp HHHT
T ss_pred hhcc
Confidence 7754
No 74
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=5.4e-29 Score=200.81 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=136.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcH----HHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAI 190 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 190 (329)
..++|+.|++.|+.+.++.+++.+. +..+ ..|.||||+|+..|+. +++++|+++|++++.+|..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 4467999999999999999998764 3455 6799999999999975 5899999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCc-hHHHHHHHh-----CcHHHHHH
Q 020239 191 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR-TPLHVAASE-----GLYLMAKL 264 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~-----~~~~iv~~ 264 (329)
..++.++.+ ..+++++|+++|++++.+|..|. ||||+|+.. +..+++++
T Consensus 84 ~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~ 138 (186)
T 3t8k_A 84 QGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138 (186)
T ss_dssp HHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred HcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence 887654322 24678888888899999999999 999999983 45679999
Q ss_pred HHH-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239 265 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302 (329)
Q Consensus 265 Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~ 302 (329)
|++ +|++++.+|..|+||||+|+..|+.++|++|.+..
T Consensus 139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 999 99999999999999999999999999999998653
No 75
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=3.2e-28 Score=186.46 Aligned_cols=134 Identities=28% Similarity=0.437 Sum_probs=101.4
Q ss_pred CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHH
Q 020239 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 218 (329)
Q Consensus 139 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~ 218 (329)
+++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-------------- 66 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-------------- 66 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH--------------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC--------------
Confidence 35667777777777777777777777777777777777777777777666666 655555555554
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCC-CchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHH
Q 020239 219 IAVARGDSDLLKRVLSNGVDPNSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 297 (329)
Q Consensus 219 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~ 297 (329)
|++++.+|.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus 67 -----------------g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~ 129 (136)
T 1d9s_A 67 -----------------GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129 (136)
T ss_dssp -----------------TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred -----------------CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 5556666777 7888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCC
Q 020239 298 LEDAKCT 304 (329)
Q Consensus 298 L~~~~~~ 304 (329)
|+++|++
T Consensus 130 Ll~~Gad 136 (136)
T 1d9s_A 130 LHAATGD 136 (136)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 8887763
No 76
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=4.3e-28 Score=185.73 Aligned_cols=113 Identities=27% Similarity=0.258 Sum_probs=96.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCC-CCcHHHHHHHcC
Q 020239 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLDEGRMCG 290 (329)
Q Consensus 212 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~ 290 (329)
.+.||||+|+..|+.+++++|++.|++++.++..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+|+..|
T Consensus 11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 89 (136)
T 1d9s_A 11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG 89 (136)
T ss_dssp CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcC
Confidence 34577777777777888888888888889999999999999999 9999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHcCCCCcccc--------ccccchhHHHHHhhhc
Q 020239 291 NKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENLLL 325 (329)
Q Consensus 291 ~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l~~ 325 (329)
+.+++++|+++|+...... .++..++.+++++|+.
T Consensus 90 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 132 (136)
T 1d9s_A 90 FLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132 (136)
T ss_dssp CHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988643332 2345578899998874
No 77
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=2.1e-28 Score=191.96 Aligned_cols=142 Identities=22% Similarity=0.211 Sum_probs=91.4
Q ss_pred CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCc-HHHHH
Q 020239 144 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS-FLCIA 220 (329)
Q Consensus 144 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~-~l~~A 220 (329)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+ +.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 34455666777777777777777776666666666666666666664 666666666666666666544 344 77777
Q ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHH
Q 020239 221 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 286 (329)
Q Consensus 221 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A 286 (329)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 777777777777878888888889999999999999999999999999999999999998887743
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-29 Score=211.68 Aligned_cols=191 Identities=16% Similarity=0.077 Sum_probs=156.8
Q ss_pred HHHHHHcCCCCCCC---CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239 132 LKGLIRAGADLNKT---DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 208 (329)
Q Consensus 132 v~~Ll~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 208 (329)
++.|+++|++++.. +.++.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 46788888887654 455678899999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHH--HHhCcHHHHHHHHHCCCCccCCCCCCCcHH
Q 020239 209 NVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVA--ASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283 (329)
Q Consensus 209 ~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l 283 (329)
+..+ +.||||+|+..|+.+++++|++.|++++..+ ..|.||||+| +..|+.+++++|+++|++++.+|..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 8765 6799999999999999999999999999987 6999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCC----------ccccccccchhHHHHHhhhc
Q 020239 284 DEGRMCGNKNLIKLLEDAKCTQ----------LSEFHYCSQGMIGIAENLLL 325 (329)
Q Consensus 284 ~~A~~~~~~~iv~~L~~~~~~~----------~~~~~~~~~~~~~~~~~l~~ 325 (329)
+.++... ..++|++.|+.. +....++..|+.++|+.++.
T Consensus 161 ~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 161 WDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp SCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred HHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 8654443 336777777642 11133566788888876554
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.5e-29 Score=225.45 Aligned_cols=204 Identities=15% Similarity=0.011 Sum_probs=142.9
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc---cccCCCCCcHHHH
Q 020239 115 ELALRFNSAAYHGDLYQLKGLIRAGADL---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLE 188 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~ 188 (329)
...||||.|+..|+.+++++|++.|+.. +..+..|.||||+|+..|+.++|++|+++|+++ +..+.. .||||+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 3459999999999999999999988732 233456788999999999999999999999752 222222 899999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCc--C--CCCcHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHH
Q 020239 189 AIKCGHDGVTSLLVKEGASLNV--D--DAGSFLCIAV-ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK 263 (329)
Q Consensus 189 A~~~~~~~~v~~Ll~~~~~~~~--~--~~~~~l~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~ 263 (329)
|+..|+.+++++|+++|++++. . .+.||||+|+ ..|+.+++++|++.|+ .|.||||+|+..|+.++++
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHH
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHH
Confidence 9999999999999999988654 3 3569999999 9999999999998764 3889999999999999999
Q ss_pred HHHHCCCCcc-------------------------------------------------------------CCCCCCCcH
Q 020239 264 LLLEAGASVF-------------------------------------------------------------TKDRWGNTP 282 (329)
Q Consensus 264 ~Ll~~g~~~~-------------------------------------------------------------~~~~~g~t~ 282 (329)
+|+++|++++ ...+.+.||
T Consensus 243 lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~ 322 (376)
T 2aja_A 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322 (376)
T ss_dssp HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred HHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence 9988765331 112345678
Q ss_pred HHHHHHcCCHHHHHHHHHcCCC-----CccccccccchhHHHHHhhhcC
Q 020239 283 LDEGRMCGNKNLIKLLEDAKCT-----QLSEFHYCSQGMIGIAENLLLL 326 (329)
Q Consensus 283 l~~A~~~~~~~iv~~L~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 326 (329)
|++|+..|+.+++++|++.+.. ...-+.+..+|++++++.-+.+
T Consensus 323 L~~A~~~g~~e~v~lLl~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 323 LRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp HHHHHHHTCTTHHHHHTTSHHHHHSCC----------------------
T ss_pred HHHHHHcCcHHHHHHHHcChHHHHHHHHhccccccccccccHHHHHHHH
Confidence 8999999999999998887542 1222344556788877765544
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=4.4e-27 Score=184.41 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=116.6
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCc-HHHHHH
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT-PLLEAI 190 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~ 190 (329)
.+..+.++||.|+..|+.+++++|++.|++++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 4455679999999999999999999999999999999999999985 99999999999999999999999999 999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHH
Q 020239 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 253 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 253 (329)
..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999999999999999998765 67999999999999999999999999999999999987743
No 81
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.1e-25 Score=169.49 Aligned_cols=125 Identities=45% Similarity=0.661 Sum_probs=92.1
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHH
Q 020239 149 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDL 228 (329)
Q Consensus 149 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~ 228 (329)
|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+ +
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~-------------------------------~ 50 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE-------------------------------V 50 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHH-------------------------------H
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHH-------------------------------H
Confidence 666777777777777777777776666666666666666665555554 4
Q ss_pred HHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 229 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 229 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
+++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+++|+.
T Consensus 51 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 51 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 5555555566667777788888888888888888888888888888888888888888888888888888888763
No 82
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=5.5e-26 Score=173.94 Aligned_cols=125 Identities=36% Similarity=0.502 Sum_probs=96.0
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCH
Q 020239 147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226 (329)
Q Consensus 147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~ 226 (329)
..+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~------------------------------- 60 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL------------------------------- 60 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-------------------------------
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-------------------------------
Confidence 4456677777777777777777777777766666666666666655554
Q ss_pred HHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302 (329)
Q Consensus 227 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~ 302 (329)
+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 61 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 5555555556667777888999999999999999999999999999989999999999999999999999998875
No 83
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1e-25 Score=179.03 Aligned_cols=149 Identities=31% Similarity=0.360 Sum_probs=115.1
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCH
Q 020239 147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226 (329)
Q Consensus 147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~ 226 (329)
..+.++|+.|+..|+.+++++|+++|++++.++..|.||||+|+. .|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-------------------------------~~~~ 60 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-------------------------------NGHL 60 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-------------------------------TTCH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-------------------------------cCCH
Confidence 344566666666666666666666666666666666666555555 4555
Q ss_pred HHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 306 (329)
Q Consensus 227 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~ 306 (329)
+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+...
T Consensus 61 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 140 (169)
T 2y1l_E 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 55555566666777888899999999999999999999999999999999999999999999999999999999988643
Q ss_pred cc--------cccccchhHHHHHhhhcC
Q 020239 307 SE--------FHYCSQGMIGIAENLLLL 326 (329)
Q Consensus 307 ~~--------~~~~~~~~~~~~~~l~~~ 326 (329)
.. ..+...++.+++++|+..
T Consensus 141 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 32 223566899999999863
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.1e-25 Score=169.49 Aligned_cols=125 Identities=46% Similarity=0.648 Sum_probs=107.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 195 (329)
+.|+||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 81 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence 56899999999999999999999999999999999999999999999999999999999999988888888888776666
Q ss_pred HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239 196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271 (329)
Q Consensus 196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~ 271 (329)
+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 82 ~~~~~Ll~~-------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 82 EVVKLLLEA-------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHc-------------------------------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 666666554 455566677788888888888888888888888775
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=1.4e-25 Score=171.59 Aligned_cols=128 Identities=32% Similarity=0.447 Sum_probs=107.0
Q ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190 (329)
Q Consensus 111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 190 (329)
.....+.++||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC
Q 020239 191 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 269 (329)
Q Consensus 191 ~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g 269 (329)
..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g-------------------------------~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHG-------------------------------ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcC-------------------------------CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 877766666666554 455566677777777777777777777777765
No 86
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=9.4e-29 Score=220.24 Aligned_cols=173 Identities=13% Similarity=0.053 Sum_probs=149.2
Q ss_pred hHHHHHHHH-cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc---cccCCCCCcHHHHHHHc
Q 020239 117 ALRFNSAAY-HGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLEAIKC 192 (329)
Q Consensus 117 ~~~l~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~ 192 (329)
.+++++|.. .++.+.++++++.|.+. .||||+|+..|+.+++++|+++|+.. +..+..|.||||+|+..
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~ 138 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence 467788877 57899999999987653 49999999999999999999998732 23344578999999999
Q ss_pred CCHHHHHHHHHcCCC-----CCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCchHHHHHH-HhCcHHHHHH
Q 020239 193 GHDGVTSLLVKEGAS-----LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS--RDYDHRTPLHVAA-SEGLYLMAKL 264 (329)
Q Consensus 193 ~~~~~v~~Ll~~~~~-----~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~iv~~ 264 (329)
|+.+++++|+++|++ ++..+ .||||+|+..|+.+++++|+++|++++. .|..|.||||+|+ ..|+.+++++
T Consensus 139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~ 217 (376)
T 2aja_A 139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 217 (376)
T ss_dssp TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHH
Confidence 999999999999974 44444 7999999999999999999999999887 8888999999999 9999999999
Q ss_pred HHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 265 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
|+++|++ |.|||++|+..|+.+++++|+++|+.
T Consensus 218 Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~ 250 (376)
T 2aja_A 218 LLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNR 250 (376)
T ss_dssp HTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred HHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence 9998753 78999999999999999999998763
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=1.8e-27 Score=191.78 Aligned_cols=138 Identities=24% Similarity=0.314 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcC
Q 020239 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCG 193 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~ 193 (329)
.+.||||.|+..|+.+++++|++ |.+++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.|
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~t--------- 112 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT--------- 112 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCC---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCC---------
Confidence 45556666666666666666665 55555555556666666666666666666666655555554 44444
Q ss_pred CHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239 194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273 (329)
Q Consensus 194 ~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 273 (329)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus 113 ----------------------pL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------- 156 (183)
T 3deo_A 113 ----------------------ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------- 156 (183)
T ss_dssp ----------------------HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------
T ss_pred ----------------------HHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------
Confidence 45555555566666666666777778888899999999875432
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239 274 TKDRWGNTPLDEGRMCGNKNLIKLLEDA 301 (329)
Q Consensus 274 ~~~~~g~t~l~~A~~~~~~~iv~~L~~~ 301 (329)
..+.+|+++|+..|+.+++++|.++
T Consensus 157 ---~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 ---TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ---CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---cccccHHHHHHHcCHHHHHHHHHHh
Confidence 3457899999999999999998765
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=1.9e-26 Score=176.67 Aligned_cols=134 Identities=34% Similarity=0.448 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHH
Q 020239 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 218 (329)
Q Consensus 139 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~ 218 (329)
|+|+ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~------------------------ 55 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH------------------------ 55 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC------------------------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC------------------------
Confidence 4455 556667777777777777777777777777777666666666666655554
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239 219 IAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298 (329)
Q Consensus 219 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L 298 (329)
.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|
T Consensus 56 -------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 56 -------LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp -------HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred -------HHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 4555555555666777788889999999999999999999999999999999999999999988888888888
Q ss_pred HHcCCC
Q 020239 299 EDAKCT 304 (329)
Q Consensus 299 ~~~~~~ 304 (329)
.+.+.+
T Consensus 129 ~~~~~s 134 (137)
T 3c5r_A 129 EKNESS 134 (137)
T ss_dssp ------
T ss_pred cccccC
Confidence 777654
No 89
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=5e-25 Score=172.01 Aligned_cols=140 Identities=30% Similarity=0.340 Sum_probs=105.2
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHH
Q 020239 184 TPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA 262 (329)
Q Consensus 184 t~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv 262 (329)
++|+.|++.|+.+++++|++.|.+++. ..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 83 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV 83 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHH
Confidence 444455555555555555544444332 1234556666666666666777777778888899999999999999999999
Q ss_pred HHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc--------ccccchhHHHHHhh
Q 020239 263 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENL 323 (329)
Q Consensus 263 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l 323 (329)
++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+...... .++..++.+++++|
T Consensus 84 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999988654332 23455778888776
No 90
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=3.3e-25 Score=175.23 Aligned_cols=149 Identities=25% Similarity=0.286 Sum_probs=112.4
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcC
Q 020239 146 DYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG 224 (329)
Q Consensus 146 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g 224 (329)
+..|.||||.|+..|+.+++++|++. +.+++..+..|. ||||+|+..|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-------------------------------t~L~~A~~~~ 53 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-------------------------------TPLHFAAGYN 53 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCC-------------------------------CHHHHHHHTT
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCC-------------------------------CHHHHHHHcC
Confidence 34455555555555555555555553 333444444444 5555555566
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 225 DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 225 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus 54 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 54 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66666666777777888899999999999999999999999999999999999999999999999999999999999875
Q ss_pred Ccc-------ccccccchhHHHHHhhhc
Q 020239 305 QLS-------EFHYCSQGMIGIAENLLL 325 (329)
Q Consensus 305 ~~~-------~~~~~~~~~~~~~~~l~~ 325 (329)
... +...+..++.+++++|+.
T Consensus 134 ~~~~~~~g~t~l~~a~~~~~~i~~~L~~ 161 (165)
T 3twr_A 134 PTKKNRDGNTPLDLVKDGDTDIQDLLRG 161 (165)
T ss_dssp TTCCCTTSCCTGGGSCTTCHHHHHHHHT
T ss_pred CcccCCCCCChhHhHhcCChHHHHHHhh
Confidence 432 234456688999999975
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=1.4e-25 Score=171.88 Aligned_cols=128 Identities=23% Similarity=0.316 Sum_probs=105.8
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 191 (329)
.+..+.|+||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999988888888887777
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCC
Q 020239 192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270 (329)
Q Consensus 192 ~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~ 270 (329)
.|+.+++++|++ .|++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus 86 ~~~~~~v~~Ll~-------------------------------~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 86 NGHVDIVKLLLS-------------------------------YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 666555555554 555666777788888888888888888877766543
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=6.4e-25 Score=184.97 Aligned_cols=139 Identities=24% Similarity=0.298 Sum_probs=104.0
Q ss_pred hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC-CCCCcHHHHHHHc
Q 020239 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKC 192 (329)
Q Consensus 114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~ 192 (329)
..+.||||.|+..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 467788888888888888888888 88888888888888888888888888888888888887776 5566766666665
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239 193 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272 (329)
Q Consensus 193 ~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~ 272 (329)
|+.++++ +|+++|++++.+|..|.||||+|+..++
T Consensus 122 g~~~~v~-------------------------------~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-------------- 156 (244)
T 3ui2_A 122 VRPEVVE-------------------------------ALVELGADIEVEDERGLTALELAREILK-------------- 156 (244)
T ss_dssp TCHHHHH-------------------------------HHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------
T ss_pred CCHHHHH-------------------------------HHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------
Confidence 5555555 4555556666677778888888875321
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301 (329)
Q Consensus 273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~ 301 (329)
...+.|||++|+..|+.+++++|.++
T Consensus 157 ---~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 157 ---TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp ---TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 24567788888888888888888775
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=189.11 Aligned_cols=138 Identities=18% Similarity=0.089 Sum_probs=100.7
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCCccc------cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCcCC--CCcHH
Q 020239 149 GRSPLHLATSRGYEDITLFLIQKGVDINI------KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNVDD--AGSFL 217 (329)
Q Consensus 149 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~--~~~~l 217 (329)
+.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++..+ +.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 34567777777777777777777777665 466677777777765 66677777777776666543 45777
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCH
Q 020239 218 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292 (329)
Q Consensus 218 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 292 (329)
|+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 777777888888888888888999999999999999999999999999998876 478999999998874
No 94
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=4.9e-24 Score=166.82 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=102.2
Q ss_pred cHHHHHHHcCCHHHHHHHHHc-CCCCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHH
Q 020239 184 TPLLEAIKCGHDGVTSLLVKE-GASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 260 (329)
Q Consensus 184 t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 260 (329)
|||+.|+..|+.+++++|++. +.+++.. .+.||||+ +..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 344444444444444444443 1122221 23455555 5566666777777777788888999999999999999999
Q ss_pred HHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhc
Q 020239 261 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLL 325 (329)
Q Consensus 261 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~ 325 (329)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ +..... ..++..++.+++++|+.
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999988 433222 22356688999998874
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=5.2e-24 Score=171.40 Aligned_cols=88 Identities=25% Similarity=0.235 Sum_probs=81.1
Q ss_pred ccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCc
Q 020239 106 TFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 184 (329)
Q Consensus 106 ~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 184 (329)
....+..+..+.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 145 (183)
T 3deo_A 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 145 (183)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCC
Confidence 33455667789999999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred HHHHHHHcC
Q 020239 185 PLLEAIKCG 193 (329)
Q Consensus 185 ~l~~A~~~~ 193 (329)
|||+|+..+
T Consensus 146 pl~~A~~~~ 154 (183)
T 3deo_A 146 ALELAREIL 154 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998743
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=2.6e-24 Score=181.21 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=99.0
Q ss_pred cccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcH
Q 020239 107 FHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 185 (329)
Q Consensus 107 ~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 185 (329)
...+..+..+.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 147 (244)
T 3ui2_A 68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147 (244)
T ss_dssp CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 4455677789999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239 186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265 (329)
Q Consensus 186 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L 265 (329)
||+|+..++ ...+.|||++|+..|+.+++++|
T Consensus 148 l~~A~~~~~------------------------------------------------~~~~~~~l~~a~~~g~~~iv~~L 179 (244)
T 3ui2_A 148 LELAREILK------------------------------------------------TTPKGNPMQFGRRIGLEKVINVL 179 (244)
T ss_dssp HHHHHHHHT------------------------------------------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------------------------------------------------ccCCCCHHHHHHHcChHHHHHHH
Confidence 999986322 13356777777777777777777
Q ss_pred HHCCC
Q 020239 266 LEAGA 270 (329)
Q Consensus 266 l~~g~ 270 (329)
++++.
T Consensus 180 ~~~~~ 184 (244)
T 3ui2_A 180 EGQVF 184 (244)
T ss_dssp HHHHE
T ss_pred HHhcc
Confidence 76543
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=4.6e-24 Score=160.20 Aligned_cols=111 Identities=31% Similarity=0.285 Sum_probs=82.8
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCH
Q 020239 147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226 (329)
Q Consensus 147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~ 226 (329)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. .|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~-------------------------------~~~~ 53 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAAD-------------------------------CGQL 53 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHH-------------------------------TTCH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHH-------------------------------cCCH
Confidence 345566666666666666666666666666666666666555555 5555
Q ss_pred HHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHH
Q 020239 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 288 (329)
Q Consensus 227 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~ 288 (329)
+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|..
T Consensus 54 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 54 EILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 55555666667777888889999999999999999999999999999999999999999843
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=2.8e-24 Score=178.35 Aligned_cols=133 Identities=20% Similarity=0.275 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcC
Q 020239 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCG 193 (329)
Q Consensus 115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~ 193 (329)
.+.|+||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..|
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~ 151 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG 151 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence 344555555555555555555555555555555555555555555555555555555 5555555555555555444444
Q ss_pred CHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239 194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273 (329)
Q Consensus 194 ~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 273 (329)
+.++++ +|+++|++++.+|..|.||||+|+..++.++++.|++.|+..+
T Consensus 152 ~~~~v~-------------------------------~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 152 YADIVQ-------------------------------LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp CHHHHH-------------------------------HHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred CHHHHH-------------------------------HHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 433333 3333444555556666666666666666666666666666655
Q ss_pred CCCCC
Q 020239 274 TKDRW 278 (329)
Q Consensus 274 ~~~~~ 278 (329)
.++..
T Consensus 201 ~~~~~ 205 (222)
T 3ehr_A 201 LSNAE 205 (222)
T ss_dssp -----
T ss_pred ccchh
Confidence 54443
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.90 E-value=3.3e-22 Score=171.47 Aligned_cols=127 Identities=21% Similarity=0.183 Sum_probs=118.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCc--------CCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCchHH
Q 020239 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPL 250 (329)
Q Consensus 182 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L 250 (329)
..++|+.|+..|+.+.+..+++.|.+++. ..+.||||+|+.. |+.+++++|+++|++++.+|..|+|||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL 209 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence 35789999999999999999999988653 3478999999999 899999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239 251 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE 308 (329)
Q Consensus 251 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~ 308 (329)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+.....
T Consensus 210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 267 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999976554
No 100
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=3e-24 Score=172.96 Aligned_cols=137 Identities=16% Similarity=0.071 Sum_probs=117.7
Q ss_pred hhhhHHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCc------HHHHHHHHhcCCCccccCCCCC
Q 020239 114 AELALRFNSAAYHGDL----YQLKGLIRAGADLNKTDYDGRSPLHLATSRGY------EDITLFLIQKGVDINIKDKFGN 183 (329)
Q Consensus 114 ~~~~~~l~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~~g~ 183 (329)
..+.||||+|+..|+. +++++|++.|+++|.+|..|.||||+|+..++ .+++++|+++|++++.+|..|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 5678999999999985 59999999999999999999999999999987 6889999999999999999999
Q ss_pred -cHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCchHHHHHHHhCcHHH
Q 020239 184 -TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLM 261 (329)
Q Consensus 184 -t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~i 261 (329)
||||+|+..+..+ .++.+++++|++ .|++++.+|..|.||||+|+..|+.++
T Consensus 116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~ 169 (186)
T 3t8k_A 116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169 (186)
T ss_dssp BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 9999888744311 123467788888 899999999999999999999999999
Q ss_pred HHHHHHCCCCccCCC
Q 020239 262 AKLLLEAGASVFTKD 276 (329)
Q Consensus 262 v~~Ll~~g~~~~~~~ 276 (329)
+++|.+...+.+.++
T Consensus 170 v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 170 LKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999998765555544
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=6.7e-24 Score=176.08 Aligned_cols=132 Identities=24% Similarity=0.264 Sum_probs=103.5
Q ss_pred CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcC
Q 020239 145 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG 224 (329)
Q Consensus 145 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g 224 (329)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----------------------- 125 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML----------------------- 125 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----------------------
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----------------------
Confidence 356678888888888888888888888888888877777777777766655555555
Q ss_pred CHHHHHHHHHC-CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239 225 DSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303 (329)
Q Consensus 225 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~ 303 (329)
++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.++++.|++.++
T Consensus 126 --------l~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 126 --------FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp --------TTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred --------HcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 444 67788889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcc
Q 020239 304 TQLS 307 (329)
Q Consensus 304 ~~~~ 307 (329)
....
T Consensus 198 ~~~~ 201 (222)
T 3ehr_A 198 VRTL 201 (222)
T ss_dssp ----
T ss_pred hhhc
Confidence 6543
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=2.5e-23 Score=156.16 Aligned_cols=113 Identities=35% Similarity=0.486 Sum_probs=95.2
Q ss_pred chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 192 (329)
Q Consensus 113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 192 (329)
+..+.++||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHh
Q 020239 193 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 256 (329)
Q Consensus 193 ~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 256 (329)
|+.+++++|+++| ++++.+|..|.||||+|...
T Consensus 84 ~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 84 GHVSCVKLLLSKG-------------------------------ADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp TCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHCCCH
T ss_pred CCHHHHHHHHHcC-------------------------------CCCCCcCCCCCCHHHHhCCH
Confidence 7766666666554 45556667777777777433
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.4e-22 Score=144.30 Aligned_cols=93 Identities=40% Similarity=0.565 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291 (329)
Q Consensus 212 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 291 (329)
++.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 020239 292 KNLIKLLEDAKCT 304 (329)
Q Consensus 292 ~~iv~~L~~~~~~ 304 (329)
.+++++|+++|+.
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999873
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=2.4e-22 Score=186.39 Aligned_cols=126 Identities=25% Similarity=0.251 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCChHHHHHHH---cCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239 118 LRFNSAAYHGDLYQLKGLIRAGADLNKT------DYDGRSPLHLATS---RGYEDITLFLIQKGVDINIKDKFGNTPLLE 188 (329)
Q Consensus 118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 188 (329)
..|+.|+..|+.+.++.|++.|+++|.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|.||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4566666666666666666666666554 5556666666644 566666666666666666666666666655
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239 189 AIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA 268 (329)
Q Consensus 189 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 268 (329)
|+..|+.+++++| +++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 214 A~~~g~~~~v~~L-------------------------------l~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 262 (497)
T 3lvq_E 214 AALYNQPDCLKLL-------------------------------LKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 262 (497)
T ss_dssp HTTTTCHHHHHHH-------------------------------HHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHH-------------------------------HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555555 555555555566666666666666666666666666
Q ss_pred CCCccC
Q 020239 269 GASVFT 274 (329)
Q Consensus 269 g~~~~~ 274 (329)
|++++.
T Consensus 263 ga~~~~ 268 (497)
T 3lvq_E 263 QAGTFA 268 (497)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 665544
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=1.5e-21 Score=167.31 Aligned_cols=128 Identities=22% Similarity=0.211 Sum_probs=90.0
Q ss_pred hhhhHHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCccccCCCCCc
Q 020239 114 AELALRFNSAAYHGDLYQLKGLIRAGADLN------KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNT 184 (329)
Q Consensus 114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t 184 (329)
....++|+.|+..|+.+.++.+++.|.+++ ..+..|.||||+|+.. |+.+++++|+++|++++.+|..|.|
T Consensus 128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~T 207 (278)
T 1dcq_A 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCC
T ss_pred chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCC
Confidence 344566777777777777777777776633 3356666777777766 6666777777766666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHH
Q 020239 185 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 264 (329)
Q Consensus 185 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~ 264 (329)
|||+|+.. |+.+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus 208 pLh~A~~~-------------------------------g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~ 256 (278)
T 1dcq_A 208 ALHYCCLT-------------------------------DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 256 (278)
T ss_dssp HHHHHHHT-------------------------------TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHc-------------------------------CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHH
Confidence 66655554 55555555566666777888889999999999999999999
Q ss_pred HHHCCCCc
Q 020239 265 LLEAGASV 272 (329)
Q Consensus 265 Ll~~g~~~ 272 (329)
|+++|++.
T Consensus 257 Ll~~ga~~ 264 (278)
T 1dcq_A 257 LTQALSGR 264 (278)
T ss_dssp HHHHHTTC
T ss_pred HHHcCCCC
Confidence 99988754
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=5.9e-22 Score=175.80 Aligned_cols=144 Identities=24% Similarity=0.209 Sum_probs=87.6
Q ss_pred CCCChHHHHHHHc-CcHHHHHHHHhcCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHH
Q 020239 147 YDGRSPLHLATSR-GYEDITLFLIQKGVDINIKD--KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAV 221 (329)
Q Consensus 147 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~ 221 (329)
..+.|+||.|+.. |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3455677777776 77777777777777777666 566777777777666666666666666665443 346666666
Q ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC---CCccCCCCCCCcHHHHHHHcC
Q 020239 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKDRWGNTPLDEGRMCG 290 (329)
Q Consensus 222 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~ 290 (329)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+ .+....+..+.|+++++....
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 667777777777777777888888888888888888888888888755 333344556677777666543
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=8.7e-22 Score=174.70 Aligned_cols=145 Identities=23% Similarity=0.204 Sum_probs=118.0
Q ss_pred CCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcCC----CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 020239 180 KFGNTPLLEAIKC-GHDGVTSLLVKEGASLNVDD----AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254 (329)
Q Consensus 180 ~~g~t~l~~A~~~-~~~~~v~~Ll~~~~~~~~~~----~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 254 (329)
..+.|+||.|+.. |+.+++++|++.|++++..+ +.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3456899999999 99999999999999998765 569999999999999999999999999999999999999999
Q ss_pred HhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--cccccchhHHHHHhhh
Q 020239 255 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--FHYCSQGMIGIAENLL 324 (329)
Q Consensus 255 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--~~~~~~~~~~~~~~l~ 324 (329)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+...... ........+++++.+.
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987543322 2233345556555443
No 108
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=4.2e-21 Score=166.42 Aligned_cols=123 Identities=27% Similarity=0.189 Sum_probs=116.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCc--------CCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCchHH
Q 020239 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPL 250 (329)
Q Consensus 182 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L 250 (329)
..++|+.|+..|+.+.++.|++.|++++. ..+.||||+|+.. |+.+++++|+++|++++.+|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 45789999999999999999999999876 2456999999997 899999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239 251 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304 (329)
Q Consensus 251 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~ 304 (329)
|+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999875
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=1.1e-21 Score=181.77 Aligned_cols=95 Identities=31% Similarity=0.289 Sum_probs=83.0
Q ss_pred CCcHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHc
Q 020239 213 AGSFLCIAVA---RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289 (329)
Q Consensus 213 ~~~~l~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 289 (329)
+.||||+|+. .|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 171 g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 250 (497)
T 3lvq_E 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250 (497)
T ss_dssp CBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT
T ss_pred cchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4455555544 6778888888888889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCcc
Q 020239 290 GNKNLIKLLEDAKCTQLS 307 (329)
Q Consensus 290 ~~~~iv~~L~~~~~~~~~ 307 (329)
|+.+++++|+++|+....
T Consensus 251 ~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 251 HHKECEELLEQAQAGTFA 268 (497)
T ss_dssp TCHHHHHHHHHTCC----
T ss_pred CCHHHHHHHHHhCCCCCC
Confidence 999999999999997644
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.5e-21 Score=138.82 Aligned_cols=92 Identities=42% Similarity=0.600 Sum_probs=83.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195 (329)
Q Consensus 116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 195 (329)
+.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 020239 196 GVTSLLVKEGAS 207 (329)
Q Consensus 196 ~~v~~Ll~~~~~ 207 (329)
+++++|+++|++
T Consensus 82 ~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 82 EVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999988764
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=5.6e-21 Score=141.46 Aligned_cols=108 Identities=36% Similarity=0.496 Sum_probs=70.6
Q ss_pred CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcC
Q 020239 145 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG 224 (329)
Q Consensus 145 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g 224 (329)
+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+. .|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~-------------------------------~~ 53 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK-------------------------------NG 53 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHT-------------------------------TT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-------------------------------cC
Confidence 45556666666666666666666666666665555555555555544 44
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHH
Q 020239 225 DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283 (329)
Q Consensus 225 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l 283 (329)
+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus 54 ~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 54 HAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred cHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 45555555555666677777788888888888888888888888888888887777763
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=1.7e-20 Score=138.83 Aligned_cols=101 Identities=37% Similarity=0.542 Sum_probs=93.7
Q ss_pred cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191 (329)
Q Consensus 112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 191 (329)
.+..+.|+||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCcCC
Q 020239 192 CGHDGVTSLLVKEGASLNVDD 212 (329)
Q Consensus 192 ~~~~~~v~~Ll~~~~~~~~~~ 212 (329)
.|+.+++++|+++|++++..+
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~ 105 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARS 105 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHS
T ss_pred CCCHHHHHHHHHcCCCCCcCC
Confidence 999999999888888877654
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=5.3e-19 Score=129.70 Aligned_cols=87 Identities=39% Similarity=0.601 Sum_probs=81.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291 (329)
Q Consensus 212 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 291 (329)
++.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 102 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence 34578888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 020239 292 KNLIKLL 298 (329)
Q Consensus 292 ~~iv~~L 298 (329)
.+++++|
T Consensus 103 ~~~~~~L 109 (110)
T 2zgd_A 103 EDLAEIL 109 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=2.5e-18 Score=126.05 Aligned_cols=92 Identities=29% Similarity=0.523 Sum_probs=84.6
Q ss_pred CccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239 110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 189 (329)
Q Consensus 110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 189 (329)
...+.++.++||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHH
Q 020239 190 IKCGHDGVTSLL 201 (329)
Q Consensus 190 ~~~~~~~~v~~L 201 (329)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999887
No 115
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=66.01 E-value=1.2 Score=34.72 Aligned_cols=61 Identities=23% Similarity=0.566 Sum_probs=52.6
Q ss_pred chhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 31 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+....+...+..+.+|.+++++.+..+...+....+.|++.+..+|...+.+|++..+.+.
T Consensus 64 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 124 (198)
T 2ptm_A 64 VANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124 (198)
T ss_dssp HHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEE
T ss_pred HHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEE
Confidence 4445556677788899999999999999999999999999999999999999999987764
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=60.81 E-value=14 Score=33.62 Aligned_cols=96 Identities=18% Similarity=0.050 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHH----H
Q 020239 163 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS----LLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL----S 234 (329)
Q Consensus 163 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll----~ 234 (329)
++++.+.+.|..++... -.+.+...++.|+.+-+. .+.+.|..++...-++.+...+..|+.+....++ +
T Consensus 91 ~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34445555565554321 112333445556654332 2233455444333334455556666654443333 3
Q ss_pred CCCCCCCCCCCCchHHHHHHHhCcHHHH
Q 020239 235 NGVDPNSRDYDHRTPLHVAASEGLYLMA 262 (329)
Q Consensus 235 ~g~~~~~~~~~g~t~L~~A~~~~~~~iv 262 (329)
.|..++.... .+.+...+..|+.+-+
T Consensus 169 ~G~~Pd~~ty--~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 169 SEVVPEEPEL--AALLKVSMDTKNADKV 194 (501)
T ss_dssp TTCCCCHHHH--HHHHHHHHHTTCHHHH
T ss_pred cCCCCCHHHH--HHHHHHHhhCCCHHHH
Confidence 4554444321 1233344455554433
No 117
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=59.55 E-value=1.1 Score=35.02 Aligned_cols=61 Identities=26% Similarity=0.598 Sum_probs=52.1
Q ss_pred chhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 31 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+....+...+..+++|.+++++.+..+...+....+.|++.+..+|...+.+|++..+.+.
T Consensus 65 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~ 125 (202)
T 3bpz_A 65 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125 (202)
T ss_dssp HHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEE
T ss_pred HHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEE
Confidence 3445555667778889999999999999999999999999999999999999999988764
No 118
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=55.46 E-value=2.8 Score=32.96 Aligned_cols=57 Identities=26% Similarity=0.661 Sum_probs=48.6
Q ss_pred hhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 34 TLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 34 ~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
..+.... .+++|.+++++.+..+...+....+.|++.+..+|...+.+|++..+.+.
T Consensus 72 ~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 128 (212)
T 3ukn_A 72 HLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSME 128 (212)
T ss_dssp TCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEE
T ss_pred HHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEE
Confidence 3333333 57889999999999999999999999999999999999999999988764
No 119
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=54.37 E-value=2.7 Score=32.40 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=58.8
Q ss_pred hhhhHhhhhcccccc------cchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhc
Q 020239 15 EEVRYLLWIRLYPVR------KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88 (329)
Q Consensus 15 ~~v~~Ll~~~~~~~~------~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (329)
+-++-++..|.+|.- ...............+|.+.+++.+..+........+++++.+..+|...+.+|++..+
T Consensus 10 ~~~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G 89 (187)
T 3gyd_A 10 HHHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTG 89 (187)
T ss_dssp CCCHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEE
T ss_pred ccccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeC
Confidence 345566666766661 22223334556677899999999999999888888899999999999999999999887
Q ss_pred ccC
Q 020239 89 VLG 91 (329)
Q Consensus 89 ~~~ 91 (329)
.+.
T Consensus 90 ~v~ 92 (187)
T 3gyd_A 90 EVN 92 (187)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 120
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=50.55 E-value=40 Score=30.49 Aligned_cols=101 Identities=13% Similarity=0.196 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHH----HHHHHhcCCCccccCCCCCcHHHHHHHcCCHH----HHHHH
Q 020239 130 YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDI----TLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG----VTSLL 201 (329)
Q Consensus 130 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~v~~L 201 (329)
++++.+.+.|..+|.... .+.+...+..|..+- ++.+.+.|..++... -.+.+...++.|+.+ +++.+
T Consensus 91 ~lf~~M~~~G~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHTTCCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHH
Confidence 456666667766543321 234556666776543 333344566555331 123334445666654 33344
Q ss_pred HHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239 202 VKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234 (329)
Q Consensus 202 l~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~ 234 (329)
.+.|..++...-.+.+...+..|+.+-+..+++
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 455665554444445666677777665555543
No 121
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=46.57 E-value=4.1 Score=29.10 Aligned_cols=51 Identities=22% Similarity=0.520 Sum_probs=44.9
Q ss_pred hhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 41 EKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 41 ~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
..+.+|...+++.+..+........+++++.++.+|.....+|++..+.+.
T Consensus 9 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 59 (137)
T 1wgp_A 9 RRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE 59 (137)
T ss_dssp SSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCE
T ss_pred HcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEE
Confidence 345678999999999999999888999999999999999999999988764
No 122
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=44.92 E-value=4.6 Score=29.03 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=49.5
Q ss_pred hhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 34 TLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 34 ~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
......+....+|.+.+.+.+..+...+....+.+++.++.+|.....+|++..+.+.
T Consensus 19 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 76 (139)
T 3ocp_A 19 DLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE 76 (139)
T ss_dssp HHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEE
T ss_pred HHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEE
Confidence 3344556677889999999999999998888899999999999999999999988775
No 123
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=43.82 E-value=4.8 Score=28.76 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=45.3
Q ss_pred hhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 40 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+....+|.+.+++.+..+........+.+++.+..+|...+.+|++..+.+.
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 64 (138)
T 1vp6_A 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVS 64 (138)
T ss_dssp HTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEE
T ss_pred HHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEE
Confidence 3456688999999999999988888899999999999999999999988764
No 124
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=43.32 E-value=3.3 Score=30.55 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=51.7
Q ss_pred chhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 31 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+.............+|.+.+++.+..+........+.+++.+..+|...+.+|++..+.+.
T Consensus 20 i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 80 (160)
T 4f8a_A 20 ICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLE 80 (160)
T ss_dssp HHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEE
T ss_pred HHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEE
Confidence 4444555666778899999999999999988888999999999999999999999988774
No 125
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=38.44 E-value=6.9 Score=28.69 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=48.4
Q ss_pred chhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 36 ~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+...+....+|.+.+.+.+..+...+....+.+++.++.+|.....+|++..+.+.
T Consensus 36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 91 (154)
T 3pna_A 36 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD 91 (154)
T ss_dssp HHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEE
T ss_pred HHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEE
Confidence 34455667889999999999999998888899999999999999999999988774
No 126
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=37.25 E-value=4.8 Score=28.86 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=44.9
Q ss_pred hhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 40 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
.....+|.+.+++.+..+........+++++.+..+|...+.+|++..+.+.
T Consensus 8 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 59 (142)
T 3mdp_A 8 LRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVE 59 (142)
T ss_dssp GGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEE
T ss_pred HhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEE
Confidence 3445678999999999999988888899999999999999999999887763
No 127
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=34.58 E-value=7.6 Score=27.95 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=44.7
Q ss_pred hhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 40 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
.....+|.+.+++.+..+........+++++.+..+|...+.+|++..+.+.
T Consensus 7 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 58 (149)
T 2pqq_A 7 LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVK 58 (149)
T ss_dssp GTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEE
T ss_pred hhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEE
Confidence 3455688999999999999988888899999999999999999998887763
No 128
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=33.02 E-value=8.5 Score=27.92 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=45.3
Q ss_pred hhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 39 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
.+....+|...+++.+..+........+.+++.+..+|...+.+|++..+.+.
T Consensus 13 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 65 (154)
T 2z69_A 13 LLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVK 65 (154)
T ss_dssp HHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEE
T ss_pred HhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEE
Confidence 34456788999999999999988888899999999999999999999887763
No 129
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=32.97 E-value=9.6 Score=31.57 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=51.0
Q ss_pred hhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 32 SQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
........+....+|...+++.+..+...+....+.+++.++.+|...+.+|++..+.+.
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~ 92 (299)
T 3shr_A 33 SKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE 92 (299)
T ss_dssp HHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEE
T ss_pred HHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEE
Confidence 334445566677889999999999999999999999999999999999999999988774
No 130
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=32.32 E-value=5.9 Score=29.31 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=48.0
Q ss_pred chhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 36 ~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+...+....+|.+++++.+..+...+....+.+++.++.+|...+.+|++..+.+.
T Consensus 36 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 91 (161)
T 3idb_B 36 LQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD 91 (161)
T ss_dssp HHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEE
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEE
Confidence 34455667789999999999999999988999999999999999999999887764
No 131
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=28.46 E-value=9.5 Score=29.11 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=46.4
Q ss_pred hhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 38 ~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
.....+..|.+.+++.+..+........+++++.+..+|...+.+|++..+.+.
T Consensus 7 ~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~ 60 (194)
T 3dn7_A 7 ALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLR 60 (194)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEE
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEE
Confidence 344566789999999999999888888899999999999999999999988774
No 132
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=27.11 E-value=47 Score=18.04 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=8.7
Q ss_pred HHHHHHcCcHHHHHHH
Q 020239 153 LHLATSRGYEDITLFL 168 (329)
Q Consensus 153 L~~A~~~g~~~~v~~L 168 (329)
+..||..|+.+.++.|
T Consensus 17 iyvA~seGd~etv~~L 32 (40)
T 1gp8_A 17 MDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHTTSCHHHHHHH
T ss_pred HHHHHhcCCHHHHHHH
Confidence 4455555555555554
No 133
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=26.01 E-value=14 Score=29.04 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=44.9
Q ss_pred hhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 40 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
.....+|.+.+++.+..+........+++++.+..+|...+.+|++..+.+.
T Consensus 8 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 59 (231)
T 3e97_A 8 LKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVR 59 (231)
T ss_dssp HHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEE
T ss_pred HhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEE
Confidence 3456789999999999999988888899999999999999999999887763
No 134
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=25.19 E-value=1.9e+02 Score=25.34 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=38.3
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCC--------------CCCCChHHHHHHHcCcHHHHHHHHh
Q 020239 121 NSAAYHGDLYQLKGLIRAGADLNKT--------------DYDGRSPLHLATSRGYEDITLFLIQ 170 (329)
Q Consensus 121 ~~A~~~g~~~~v~~Ll~~~~~~~~~--------------~~~g~t~L~~A~~~g~~~~v~~Ll~ 170 (329)
+..+-.|+...|+.-+..|.+++.+ -.-|.|.+|+|++..+.+++-.|+.
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 4456678888888888887765322 2458899999999999999988886
No 135
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=23.55 E-value=18 Score=30.51 Aligned_cols=54 Identities=17% Similarity=0.359 Sum_probs=47.1
Q ss_pred hhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 38 ~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
.....+.+|.+.+++.+..+...+....+++++.++.+|...+.+|++..+.+.
T Consensus 13 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 66 (333)
T 4ava_A 13 EDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAE 66 (333)
T ss_dssp HHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEE
T ss_pred HHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEE
Confidence 344567789999999999999999888999999999999999999999988774
No 136
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=22.99 E-value=17 Score=31.10 Aligned_cols=53 Identities=26% Similarity=0.444 Sum_probs=0.0
Q ss_pred hhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 39 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
..+...+|.+.+++.+..+........+++++.+..+|+..+.+|++..+...
T Consensus 229 ~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 281 (355)
T 3beh_A 229 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVS 281 (355)
T ss_dssp -----------------------------------------------------
T ss_pred hhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEE
Confidence 34456778889999999998888888999999999999999999999887764
No 137
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=22.65 E-value=10 Score=26.88 Aligned_cols=53 Identities=17% Similarity=0.412 Sum_probs=44.4
Q ss_pred hhhhhcccccccHHHHHHHHHHhhhcccC-chhHHHhcCCccchhhhhhhcccC
Q 020239 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 39 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
.+....+|...+.+.+..+........+. +++.++.+|.....+|++..+.+.
T Consensus 17 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 70 (134)
T 2d93_A 17 FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVE 70 (134)
T ss_dssp HHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEE
T ss_pred HHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEE
Confidence 34456778999999999998888878888 899999999999999999887764
No 138
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=22.04 E-value=13 Score=28.87 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=43.3
Q ss_pred hcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 43 VSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 43 ~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+.+|.+.+++.+..+........+++++.+..+|...+.+|++..+.+.
T Consensus 4 ~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 52 (216)
T 4ev0_A 4 SPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVR 52 (216)
T ss_dssp CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEE
T ss_pred ChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEE
Confidence 4678999999999999988888899999999999999999999887763
No 139
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=21.21 E-value=15 Score=28.68 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=45.6
Q ss_pred hhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 39 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
......+|.+.+++.+..+........+++++.+..+|...+.+|++..+.+.
T Consensus 10 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 62 (227)
T 3dkw_A 10 LLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVK 62 (227)
T ss_dssp HHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEE
T ss_pred HHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEE
Confidence 34456789999999999999888888899999999999999999999988774
No 140
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=21.10 E-value=15 Score=29.03 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=45.5
Q ss_pred hhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91 (329)
Q Consensus 40 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (329)
+....+|.+.+++.+..+...+....+++++.++.+|...+.+|++..+.+.
T Consensus 9 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 60 (246)
T 3of1_A 9 IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVD 60 (246)
T ss_dssp HHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEE
T ss_pred HhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEE
Confidence 3446689999999999999988888999999999999999999999988774
No 141
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=20.56 E-value=2.7e+02 Score=24.41 Aligned_cols=24 Identities=25% Similarity=0.043 Sum_probs=18.2
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHH
Q 020239 244 YDHRTPLHVAASEGLYLMAKLLLE 267 (329)
Q Consensus 244 ~~g~t~L~~A~~~~~~~iv~~Ll~ 267 (329)
..|.|.+|.|++..+.+++..|+.
T Consensus 67 ~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 67 DVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccCchhhhhhhhhhhhhHHHHhhh
Confidence 347788888888888888777776
Done!