BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020242
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 167 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXX 226
VGG + W P + Y WA F VGD L FD+ A +HDV VTK A+D
Sbjct: 6 VGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 227 XXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
+I L T G Y+ CT HC GQKL++NV
Sbjct: 65 SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 30 AAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAI 89
AAG HDV VT+ +F+ C +P+S T P + L +GP Y+IC+ HC GQKL+I
Sbjct: 41 AAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSI 100
Query: 90 NV 91
NV
Sbjct: 101 NV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDXXXXX 223
H+VG GW+VP + + Y WA F VGD L F++PA H+V E+ TK ++D
Sbjct: 6 HIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFV 64
Query: 224 XXXXXXXXXXXRIT-LGTAGEHYFFCTFPGHCSAGQKLAVNV 264
I L G HYF CT HCS GQKL++NV
Sbjct: 65 NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 31 AGNHDVTRV-TQSSFNACN---TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK 86
A H+V + T+ SF+ACN + + + RT SP L G HYF+C+ HC GQK
Sbjct: 44 ANAHNVHEMETKQSFDACNFVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQK 101
Query: 87 LAINV 91
L+INV
Sbjct: 102 LSINV 106
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 165 HVVGGALGWT--VPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXX 222
H VG + GWT VP + Y WA +N F VGD L+F+Y + H+V++V + +
Sbjct: 5 HKVGDSTGWTTLVPYD----YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 223 XXXXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
I L G YF C PGHC GQK+ + V
Sbjct: 61 SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 34 HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 91
H+V +V Q F +CN++SP + T+ S+ L G YF+C PGHC GQK+ I V
Sbjct: 45 HNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 224
+VVGG+ GWT ++W + F GDIL+F+Y +H+VV V + +
Sbjct: 3 YVVGGSGGWTFNT------ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 225 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 263
+I L G+ YF C FPGHC +G K+AVN
Sbjct: 57 GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 34 HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 90
H+V V Q F+ CNT + T+ + L G YFIC+FPGHC G K+A+N
Sbjct: 39 HNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 171 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXXXXXX 230
+GW+ N AR +F GD+LVF Y H+VV V Y
Sbjct: 5 IGWSFNVNG-------ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57
Query: 231 XXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 263
RI L T G++YF C+FPGHC G K+A+N
Sbjct: 58 SGQDRIKL-TRGQNYFICSFPGHCGGGMKIAIN 89
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 32 GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 90
G H+V V + +C+ ++ + LT G +YFICSFPGHC GG K+AIN
Sbjct: 32 GQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYFICSFPGHCGGGMKIAIN 89
>pdb|1I53|A Chain A, Re(I)-Tricarbonly Diimine (Q107h)) Azurin
pdb|1I53|B Chain B, Re(I)-Tricarbonly Diimine (Q107h)) Azurin
Length = 128
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/13 (92%), Positives = 12/13 (92%), Gaps = 1/13 (7%)
Query: 242 GEHY-FFCTFPGH 253
GEHY FFCTFPGH
Sbjct: 105 GEHYMFFCTFPGH 117
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 67 ASGPHYFICSFPGHCLGGQKLAINV 91
A G + +IC+FPGH L G K + V
Sbjct: 114 APGTYLYICTFPGHYLAGMKGTLTV 138
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 242 GEHYFFCTFPGHCSAGQK 259
G + + CTFPGH AG K
Sbjct: 116 GTYLYICTFPGHYLAGMK 133
>pdb|1NWO|A Chain A, Crystallographic Study Of Azurin From Pseudomonas Putida
pdb|1NWO|B Chain B, Crystallographic Study Of Azurin From Pseudomonas Putida
pdb|1NWP|A Chain A, Crystallographic Study Of Azurin From Pseudomonas Putida
pdb|1NWP|B Chain B, Crystallographic Study Of Azurin From Pseudomonas Putida
Length = 128
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 241 AGEHY-FFCTFPGHCS 255
AGE Y FFC+FPGH S
Sbjct: 104 AGEKYGFFCSFPGHIS 119
>pdb|1R1C|A Chain A, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
pdb|1R1C|B Chain B, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
pdb|1R1C|C Chain C, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
pdb|1R1C|D Chain D, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
Length = 128
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/13 (84%), Positives = 12/13 (92%), Gaps = 1/13 (7%)
Query: 242 GEHY-FFCTFPGH 253
GEH+ FFCTFPGH
Sbjct: 105 GEHWMFFCTFPGH 117
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 240 TAGEHYFFCTFPGHCSAGQ 258
TAG +Y+ C PGH + GQ
Sbjct: 130 TAGTYYYVCQIPGHAATGQ 148
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 175 VPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAA 216
+P +A G Q NFS+ D+ + PA V + V KAA
Sbjct: 35 IPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAA 76
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 175 VPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAA 216
+P +A G Q NFS+ D+ + PA V + V KAA
Sbjct: 18 IPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAA 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,574,285
Number of Sequences: 62578
Number of extensions: 139957
Number of successful extensions: 382
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 36
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)