Query 020242
Match_columns 329
No_of_seqs 315 out of 1654
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 2E-36 4.3E-41 266.0 14.4 103 159-266 17-119 (167)
2 PLN03148 Blue copper-like prot 100.0 1.7E-30 3.7E-35 228.5 11.7 88 4-92 31-118 (167)
3 PF02298 Cu_bind_like: Plastoc 100.0 1.7E-29 3.6E-34 200.2 3.8 85 173-258 1-85 (85)
4 PF02298 Cu_bind_like: Plastoc 99.9 1.2E-28 2.6E-33 195.3 4.3 78 8-85 8-85 (85)
5 TIGR02656 cyanin_plasto plasto 98.2 1.3E-05 2.8E-10 64.9 9.2 75 188-265 17-99 (99)
6 TIGR03102 halo_cynanin halocya 98.2 1.8E-05 4E-10 66.3 10.0 89 160-265 21-115 (115)
7 PF00127 Copper-bind: Copper b 98.1 7.7E-06 1.7E-10 66.1 6.9 76 188-265 17-99 (99)
8 PF00127 Copper-bind: Copper b 98.1 5.9E-06 1.3E-10 66.7 5.0 77 14-92 16-99 (99)
9 COG3794 PetE Plastocyanin [Ene 98.0 4.6E-05 9.9E-10 65.0 9.7 70 188-265 54-127 (128)
10 PRK02710 plastocyanin; Provisi 97.9 0.00011 2.4E-09 61.5 9.8 89 161-265 29-119 (119)
11 TIGR02375 pseudoazurin pseudoa 97.9 9.7E-05 2.1E-09 62.0 9.0 75 188-267 15-89 (116)
12 COG3794 PetE Plastocyanin [Ene 97.8 0.0001 2.2E-09 62.9 7.9 71 14-92 53-127 (128)
13 TIGR02375 pseudoazurin pseudoa 97.8 0.00016 3.4E-09 60.7 8.6 80 10-94 10-89 (116)
14 TIGR02656 cyanin_plasto plasto 97.7 0.00012 2.7E-09 59.1 7.2 76 14-92 16-99 (99)
15 TIGR03102 halo_cynanin halocya 97.6 0.00022 4.7E-09 59.8 7.6 76 10-92 37-115 (115)
16 PRK02710 plastocyanin; Provisi 97.2 0.0012 2.5E-08 55.3 7.0 76 10-92 42-119 (119)
17 TIGR02657 amicyanin amicyanin. 97.1 0.0027 5.8E-08 49.6 7.6 71 188-265 11-83 (83)
18 TIGR03095 rusti_cyanin rusticy 97.1 0.0014 3.1E-08 57.1 6.5 77 189-265 53-148 (148)
19 TIGR03095 rusti_cyanin rusticy 96.6 0.0052 1.1E-07 53.6 6.4 75 17-91 54-147 (148)
20 TIGR02657 amicyanin amicyanin. 96.6 0.0092 2E-07 46.6 7.1 72 14-92 10-83 (83)
21 PF06525 SoxE: Sulfocyanin (So 95.9 0.032 7E-07 50.8 7.5 79 191-269 89-190 (196)
22 PF06525 SoxE: Sulfocyanin (So 95.8 0.039 8.4E-07 50.3 7.9 88 9-96 77-190 (196)
23 KOG3858 Ephrin, ligand for Eph 94.7 0.63 1.4E-05 43.6 12.2 78 191-269 46-164 (233)
24 TIGR03096 nitroso_cyanin nitro 92.9 0.16 3.4E-06 43.9 4.5 66 188-264 61-133 (135)
25 PF00812 Ephrin: Ephrin; Inte 92.5 0.044 9.5E-07 47.8 0.6 76 190-265 24-144 (145)
26 TIGR03094 sulfo_cyanin sulfocy 92.2 0.15 3.2E-06 46.1 3.5 31 239-269 159-189 (195)
27 TIGR03094 sulfo_cyanin sulfocy 92.1 0.71 1.5E-05 41.8 7.7 29 66-94 159-187 (195)
28 COG4454 Uncharacterized copper 91.7 0.27 5.8E-06 43.4 4.5 78 188-265 63-157 (158)
29 TIGR03096 nitroso_cyanin nitro 89.3 0.38 8.2E-06 41.5 3.3 60 9-77 55-120 (135)
30 COG4454 Uncharacterized copper 89.1 0.53 1.1E-05 41.5 4.1 79 14-92 62-157 (158)
31 PF13473 Cupredoxin_1: Cupredo 87.7 0.43 9.3E-06 38.5 2.5 65 14-91 34-104 (104)
32 TIGR02376 Cu_nitrite_red nitri 87.4 1.4 3E-05 42.9 6.2 77 189-268 60-148 (311)
33 PF13473 Cupredoxin_1: Cupredo 86.2 0.62 1.3E-05 37.5 2.6 64 188-264 35-104 (104)
34 PF00812 Ephrin: Ephrin; Inte 85.4 0.55 1.2E-05 41.0 2.1 75 18-92 25-144 (145)
35 TIGR02695 azurin azurin. Azuri 84.8 4 8.6E-05 34.8 6.9 29 61-90 91-124 (125)
36 PRK02888 nitrous-oxide reducta 83.1 4.3 9.4E-05 43.3 7.8 68 188-266 555-634 (635)
37 TIGR02376 Cu_nitrite_red nitri 82.9 3.1 6.7E-05 40.4 6.3 75 17-94 61-147 (311)
38 TIGR02695 azurin azurin. Azuri 82.6 5.4 0.00012 34.0 6.8 29 234-263 91-124 (125)
39 PF07732 Cu-oxidase_3: Multico 81.8 0.58 1.3E-05 39.0 0.7 79 189-267 27-116 (117)
40 PRK02888 nitrous-oxide reducta 78.1 5.3 0.00011 42.7 6.5 70 16-93 556-634 (635)
41 PF07732 Cu-oxidase_3: Multico 77.1 1 2.2E-05 37.5 0.8 77 17-93 28-115 (117)
42 KOG3858 Ephrin, ligand for Eph 75.6 6.7 0.00015 36.9 5.8 78 19-96 47-164 (233)
43 TIGR02866 CoxB cytochrome c ox 74.5 12 0.00026 33.9 7.1 88 163-266 92-192 (201)
44 TIGR03388 ascorbase L-ascorbat 72.1 5.5 0.00012 41.6 4.8 81 188-268 32-123 (541)
45 PF00116 COX2: Cytochrome C ox 70.3 6.3 0.00014 33.0 3.9 67 188-265 46-120 (120)
46 COG1622 CyoA Heme/copper-type 67.2 9.1 0.0002 36.3 4.7 83 4-95 122-214 (247)
47 TIGR02866 CoxB cytochrome c ox 65.7 9.7 0.00021 34.5 4.5 81 3-93 99-192 (201)
48 PF00116 COX2: Cytochrome C ox 65.0 8.8 0.00019 32.1 3.8 64 17-92 48-120 (120)
49 TIGR01480 copper_res_A copper- 63.8 16 0.00035 38.8 6.3 88 172-265 487-587 (587)
50 TIGR03388 ascorbase L-ascorbat 62.7 14 0.0003 38.7 5.5 78 17-94 34-122 (541)
51 COG1622 CyoA Heme/copper-type 61.9 19 0.00042 34.0 5.9 93 163-268 114-214 (247)
52 PF02839 CBM_5_12: Carbohydrat 61.7 5.2 0.00011 26.7 1.5 19 183-201 1-19 (41)
53 TIGR01480 copper_res_A copper- 57.3 19 0.00041 38.3 5.4 90 1-91 483-586 (587)
54 PLN00044 multi-copper oxidase- 56.0 23 0.0005 37.8 5.8 76 189-268 61-150 (596)
55 PF01690 PLRV_ORF5: Potato lea 55.0 9.8 0.00021 39.1 2.7 15 252-267 221-235 (465)
56 PF02839 CBM_5_12: Carbohydrat 54.2 6 0.00013 26.4 0.8 18 10-27 1-18 (41)
57 PLN02604 oxidoreductase 53.5 18 0.00039 38.1 4.5 81 188-268 55-146 (566)
58 PLN00044 multi-copper oxidase- 52.9 37 0.0008 36.2 6.7 78 17-94 62-149 (596)
59 PLN02191 L-ascorbate oxidase 51.7 20 0.00043 37.9 4.5 78 189-266 55-143 (574)
60 MTH00047 COX2 cytochrome c oxi 50.9 19 0.00042 32.8 3.7 32 235-268 159-193 (194)
61 PRK10378 inactive ferrous ion 49.4 42 0.0009 33.8 6.1 29 61-94 90-118 (375)
62 PLN02354 copper ion binding / 49.4 53 0.0011 34.7 7.2 78 17-94 60-147 (552)
63 PLN02835 oxidoreductase 49.1 50 0.0011 34.7 7.0 77 17-93 62-148 (539)
64 PLN02835 oxidoreductase 48.3 39 0.00085 35.5 6.0 78 189-266 61-148 (539)
65 PLN02354 copper ion binding / 48.1 45 0.00098 35.2 6.5 80 189-268 59-148 (552)
66 PLN02168 copper ion binding / 47.2 47 0.001 35.0 6.4 80 189-268 58-147 (545)
67 PLN02168 copper ion binding / 45.7 61 0.0013 34.2 7.0 78 17-94 59-146 (545)
68 PF07174 FAP: Fibronectin-atta 45.4 2.1E+02 0.0047 27.7 9.8 37 190-226 133-183 (297)
69 PLN02792 oxidoreductase 45.1 46 0.00099 35.0 5.9 79 189-267 48-136 (536)
70 MTH00047 COX2 cytochrome c oxi 44.8 25 0.00054 32.0 3.5 32 62-95 159-193 (194)
71 TIGR03389 laccase laccase, pla 44.5 46 0.001 34.8 5.9 79 189-268 35-124 (539)
72 cd06555 ASCH_PF0470_like ASC-1 44.1 23 0.00049 29.5 2.8 14 189-202 29-42 (109)
73 PF01690 PLRV_ORF5: Potato lea 43.8 25 0.00054 36.3 3.6 25 185-209 79-103 (465)
74 PLN02792 oxidoreductase 43.4 68 0.0015 33.7 6.9 77 17-93 49-135 (536)
75 PF14326 DUF4384: Domain of un 42.9 83 0.0018 24.2 5.8 17 191-207 2-18 (83)
76 cd06555 ASCH_PF0470_like ASC-1 41.6 22 0.00047 29.6 2.4 30 17-46 30-61 (109)
77 PF12961 DUF3850: Domain of Un 40.6 18 0.00038 28.0 1.6 14 15-28 25-38 (72)
78 PF02362 B3: B3 DNA binding do 40.5 17 0.00038 28.3 1.6 27 6-32 61-87 (100)
79 PLN02604 oxidoreductase 39.6 51 0.0011 34.8 5.4 77 16-94 56-145 (566)
80 PF12195 End_beta_barrel: Beta 39.4 11 0.00025 29.4 0.3 49 17-74 26-80 (83)
81 PRK10378 inactive ferrous ion 39.2 59 0.0013 32.7 5.4 31 232-267 88-118 (375)
82 PF05382 Amidase_5: Bacterioph 37.8 45 0.00097 29.1 3.8 33 17-49 74-111 (145)
83 TIGR03389 laccase laccase, pla 36.5 91 0.002 32.6 6.6 77 17-94 36-123 (539)
84 PLN02191 L-ascorbate oxidase 36.4 51 0.0011 34.9 4.7 77 17-93 56-143 (574)
85 PLN02991 oxidoreductase 31.5 1.3E+02 0.0027 31.9 6.6 80 189-268 60-149 (543)
86 PF05382 Amidase_5: Bacterioph 31.4 1.2E+02 0.0027 26.4 5.5 34 190-223 74-112 (145)
87 PTZ00047 cytochrome c oxidase 29.4 69 0.0015 28.6 3.7 30 235-266 116-148 (162)
88 PF10377 ATG11: Autophagy-rela 28.2 40 0.00086 28.7 1.9 18 17-34 41-58 (129)
89 MTH00140 COX2 cytochrome c oxi 28.1 72 0.0016 29.6 3.8 30 235-266 183-215 (228)
90 PLN02991 oxidoreductase 27.5 1.9E+02 0.004 30.6 7.1 78 17-94 61-148 (543)
91 smart00495 ChtBD3 Chitin-bindi 25.4 48 0.001 22.0 1.5 18 183-200 1-18 (41)
92 MTH00140 COX2 cytochrome c oxi 23.0 97 0.0021 28.7 3.6 30 62-93 183-215 (228)
93 MTH00154 COX2 cytochrome c oxi 22.9 1E+02 0.0022 28.7 3.7 30 235-266 183-215 (227)
94 MTH00168 COX2 cytochrome c oxi 22.6 1E+02 0.0022 28.6 3.7 30 235-266 183-215 (225)
95 MTH00117 COX2 cytochrome c oxi 22.4 1.1E+02 0.0024 28.4 3.9 30 235-266 183-215 (227)
96 PTZ00047 cytochrome c oxidase 22.4 1E+02 0.0023 27.4 3.5 30 62-93 116-148 (162)
97 MTH00139 COX2 cytochrome c oxi 22.2 1E+02 0.0022 28.6 3.6 30 235-266 183-215 (226)
98 MTH00129 COX2 cytochrome c oxi 22.0 1E+02 0.0022 28.8 3.5 30 235-266 183-215 (230)
99 COG3627 PhnJ Uncharacterized e 21.8 52 0.0011 30.7 1.5 25 61-85 257-281 (291)
100 MTH00098 COX2 cytochrome c oxi 21.2 1.1E+02 0.0024 28.4 3.6 30 235-266 183-215 (227)
101 MTH00038 COX2 cytochrome c oxi 20.8 1.2E+02 0.0026 28.2 3.8 30 235-266 183-215 (229)
102 TIGR01433 CyoA cytochrome o ub 20.3 1.1E+02 0.0024 28.4 3.4 89 163-266 116-214 (226)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=2e-36 Score=266.02 Aligned_cols=103 Identities=32% Similarity=0.662 Sum_probs=96.9
Q ss_pred CCCceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEe
Q 020242 159 TRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITL 238 (329)
Q Consensus 159 ~a~~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L 238 (329)
.+.+++|+|||+.||+. ..+|++|+++++|+|||+|+|+|+++.|+|+||++++|++|+..+++..+++|++.|+|
T Consensus 17 ~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L 92 (167)
T PLN03148 17 ATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL 92 (167)
T ss_pred hccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence 45688999999999984 34799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 020242 239 GTAGEHYFFCTFPGHCSAGQKLAVNVTG 266 (329)
Q Consensus 239 ~~~G~~YFic~~~~HC~~GmKl~I~V~~ 266 (329)
+++|+|||||+ .+||++||||+|+|..
T Consensus 93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 93 NKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred cCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 99999999999 6999999999999953
No 2
>PLN03148 Blue copper-like protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=228.51 Aligned_cols=88 Identities=22% Similarity=0.401 Sum_probs=84.1
Q ss_pred cccCCChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCC
Q 020242 4 AELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG 83 (329)
Q Consensus 4 ~~~~~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~ 83 (329)
|+.+.||+.|+++++|++||+|+|+|..++|+|+||++++|++|+..+++..+++|++.|+|+++|++||||+ .+||++
T Consensus 31 W~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L~~~G~~YFIcg-~ghC~~ 109 (167)
T PLN03148 31 WNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICG-NGQCFN 109 (167)
T ss_pred cCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEecCCccEEEEcC-CCcccc
Confidence 4457899999999999999999999999999999999999999999999999999999999999999999999 699999
Q ss_pred CCeEEEEee
Q 020242 84 GQKLAINVS 92 (329)
Q Consensus 84 GmKl~I~V~ 92 (329)
||||.|+|.
T Consensus 110 GmKl~I~V~ 118 (167)
T PLN03148 110 GMKVTILVH 118 (167)
T ss_pred CCEEEEEEc
Confidence 999999996
No 3
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.95 E-value=1.7e-29 Score=200.24 Aligned_cols=85 Identities=53% Similarity=1.014 Sum_probs=70.3
Q ss_pred cccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCC
Q 020242 173 WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG 252 (329)
Q Consensus 173 W~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~ 252 (329)
|+++.++ .+|++||++++|+|||+|+|+|+.+.|+|+||+|++|++|+..+++..+.+|++.|+|+++|.+||||++++
T Consensus 1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 7776643 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020242 253 HCSAGQ 258 (329)
Q Consensus 253 HC~~Gm 258 (329)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999999
No 4
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.95 E-value=1.2e-28 Score=195.28 Aligned_cols=78 Identities=38% Similarity=0.768 Sum_probs=65.4
Q ss_pred CChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCC
Q 020242 8 SDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85 (329)
Q Consensus 8 ~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~Gm 85 (329)
.||+.|+++++|+|||+|+|+|..+.|+|+||+|++|++|+..+++..+.+|++.|+|+++|++||||++++||++||
T Consensus 8 ~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~~Gq 85 (85)
T PF02298_consen 8 SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGHCQKGQ 85 (85)
T ss_dssp THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTTTTTT-
T ss_pred cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCcccccC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999999
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.17 E-value=1.3e-05 Score=64.87 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCCeeeecCEEEEeeC-CCCceEEEEcccccc------CCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCe
Q 020242 188 RNNNFSVGDILVFDYP-ARVHDVVEVTKAAYD------SCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQK 259 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~-~~~h~V~~V~~~~y~------~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmK 259 (329)
+..++++||+|.|..+ ...|+|+..+.. .. .....+.......| ...++++.+|.|.|+|. +|+++||+
T Consensus 17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~ 93 (99)
T TIGR02656 17 AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMV 93 (99)
T ss_pred CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCE
Confidence 6789999999999865 367999864321 00 01110000112223 35788889999999998 89999999
Q ss_pred EEEEec
Q 020242 260 LAVNVT 265 (329)
Q Consensus 260 l~I~V~ 265 (329)
..|.|.
T Consensus 94 G~I~V~ 99 (99)
T TIGR02656 94 GKITVE 99 (99)
T ss_pred EEEEEC
Confidence 999984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.16 E-value=1.8e-05 Score=66.26 Aligned_cols=89 Identities=25% Similarity=0.307 Sum_probs=62.3
Q ss_pred CCceEEEEe--ccC-CcccCCCCCcCcccccCCCeeeecCEEEEeeCC--CCceEEEEccccccCCCCCCCcccCCCC-C
Q 020242 160 RQPATHVVG--GAL-GWTVPPNASVGYQNWARNNNFSVGDILVFDYPA--RVHDVVEVTKAAYDSCNSSSTISKSTNP-P 233 (329)
Q Consensus 160 a~~~~~~VG--g~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~--~~h~V~~V~~~~y~~C~~~~~i~~~~~G-~ 233 (329)
+...++.|| +.. +..+.+ ...++++||+|.|.++. ..|+|.-.....|+. ... ....| .
T Consensus 21 ~~~~~v~~G~~~~~g~~~F~P----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G~t 85 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFAFDP----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEGTT 85 (115)
T ss_pred CceEEEEecccCCCCceeEeC----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCCCE
Confidence 355688888 322 344332 56899999999999864 579998543334541 111 12223 5
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242 234 TRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 265 (329)
Q Consensus 234 ~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 265 (329)
..++|+++|.|-|+|.. |=..|||..|.|.
T Consensus 86 ~s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 86 YEHTFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 68999999999999984 8778999999984
No 7
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.13 E-value=7.7e-06 Score=66.09 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=54.1
Q ss_pred CCCeeeecCEEEEee-CCCCceEEEEcccc--ccCCCCCCC---cccCCCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeE
Q 020242 188 RNNNFSVGDILVFDY-PARVHDVVEVTKAA--YDSCNSSST---ISKSTNPP-TRITLGTAGEHYFFCTFPGHCSAGQKL 260 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y-~~~~h~V~~V~~~~--y~~C~~~~~---i~~~~~G~-~~v~L~~~G~~YFic~~~~HC~~GmKl 260 (329)
...++++||+|.|.. ....|+|+.+.... -..+..... ...+..|. ..++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 678999999999999 57789999876220 001111111 11223343 4678889999999999 7 99999999
Q ss_pred EEEec
Q 020242 261 AVNVT 265 (329)
Q Consensus 261 ~I~V~ 265 (329)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 8
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.06 E-value=5.9e-06 Score=66.74 Aligned_cols=77 Identities=21% Similarity=0.170 Sum_probs=54.1
Q ss_pred cCCCceeeCCEEEEEE-cCCCCcEEEeCcc--cccCCCCCCC---CcccCCCC-cEEEecccCceEEEcCCCCCCCCCCe
Q 020242 14 LCLFSFFFFTFSVFNF-AAGNHDVTRVTQS--SFNACNTTSP---LSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 14 a~~~tf~vGD~LvF~y-~~~~H~V~~V~~~--~y~~C~~~~~---~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmK 86 (329)
....++++||+|.|.. ....|+|+..... .-..+..... ......|. ..++++++|.|.|+|. + |...||+
T Consensus 16 P~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~ 93 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMV 93 (99)
T ss_dssp SSEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSE
T ss_pred CCEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCE
Confidence 4456899999999999 4678999887522 0111211111 11233444 4688889999999999 8 9999999
Q ss_pred EEEEee
Q 020242 87 LAINVS 92 (329)
Q Consensus 87 l~I~V~ 92 (329)
..|.|.
T Consensus 94 G~i~V~ 99 (99)
T PF00127_consen 94 GTIIVE 99 (99)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999884
No 9
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.01 E-value=4.6e-05 Score=64.99 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=54.3
Q ss_pred CCCeeeecCEEEEeeCCC-CceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEE
Q 020242 188 RNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFPGHCSAGQKLAVN 263 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~ 263 (329)
+..++++||+|.|.+... .|||.-+...+. .....+..+ ..+++++++|.|.|+|.- |=..|||..|.
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~------~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~Iv 125 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDP------EGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIV 125 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCCc------ccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEE
Confidence 678999999999999877 999997755411 111222222 357889999999999986 99999999999
Q ss_pred ec
Q 020242 264 VT 265 (329)
Q Consensus 264 V~ 265 (329)
|.
T Consensus 126 V~ 127 (128)
T COG3794 126 VG 127 (128)
T ss_pred eC
Confidence 85
No 10
>PRK02710 plastocyanin; Provisional
Probab=97.89 E-value=0.00011 Score=61.53 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=58.9
Q ss_pred CceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeC-CCCceEEEEccccccCCCCCCCcccCCCC-CcEEEe
Q 020242 161 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP-ARVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITL 238 (329)
Q Consensus 161 ~~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~-~~~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~L 238 (329)
...++.+|.+.|+- .|.. +..++++||+|.|..+ ...|+++.-.. +.....+ .....| ...+++
T Consensus 29 ~~~~V~~~~~~~~~-------~F~P--~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~--~~~~pg~t~~~tF 94 (119)
T PRK02710 29 ETVEVKMGSDAGML-------AFEP--STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD--LAFAPGESWEETF 94 (119)
T ss_pred ceEEEEEccCCCee-------EEeC--CEEEEcCCCEEEEEECCCCCceEEecCC---ccccccc--cccCCCCEEEEEe
Confidence 34466667654442 1332 6789999999999864 46799873211 1110111 112334 367889
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242 239 GTAGEHYFFCTFPGHCSAGQKLAVNVT 265 (329)
Q Consensus 239 ~~~G~~YFic~~~~HC~~GmKl~I~V~ 265 (329)
+.+|.|-|+|. .|=+.|||..|.|.
T Consensus 95 ~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 95 SEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred cCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 99999999998 79999999999984
No 11
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.86 E-value=9.7e-05 Score=61.97 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=55.2
Q ss_pred CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 020242 188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG 267 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~ 267 (329)
...++++||+|.|.+....|+|..+.....+. .+....-.+....++++++|.|-|+|. .|=..||+..|.|...
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 67899999999999987789998643211110 111111123346789999999999998 7999999999999874
No 12
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.78 E-value=0.0001 Score=62.89 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=53.1
Q ss_pred cCCCceeeCCEEEEEEcCC-CCcEEEeCcccccCCCCCCCCcccCCC---CcEEEecccCceEEEcCCCCCCCCCCeEEE
Q 020242 14 LCLFSFFFFTFSVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCLGGQKLAI 89 (329)
Q Consensus 14 a~~~tf~vGD~LvF~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I 89 (329)
.+..++.+||+|.|.+... .|||.-+...+.+ ....+..+ ..+++++.+|.|.|+|.- |=..|||..|
T Consensus 53 PA~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~------g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~I 124 (128)
T COG3794 53 PAEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE------GSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKI 124 (128)
T ss_pred CcEEEECCCCEEEEEECCCCCceEEEeCCCCcc------cccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEE
Confidence 4556899999999999877 8999776443111 11122222 257899999999999985 8889999999
Q ss_pred Eee
Q 020242 90 NVS 92 (329)
Q Consensus 90 ~V~ 92 (329)
.|.
T Consensus 125 vV~ 127 (128)
T COG3794 125 VVG 127 (128)
T ss_pred EeC
Confidence 985
No 13
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.76 E-value=0.00016 Score=60.75 Aligned_cols=80 Identities=16% Similarity=0.071 Sum_probs=56.5
Q ss_pred hhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEE
Q 020242 10 IDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAI 89 (329)
Q Consensus 10 y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I 89 (329)
+..=....++++||+|.|.+....|+|..+.....+. .+....-.+....++++++|.|-|+|. .|=..||+..|
T Consensus 10 m~F~P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V 84 (116)
T TIGR02375 10 MVFEPAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALI 84 (116)
T ss_pred EEEeCCEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEE
Confidence 4444566799999999999987789996542211111 111111122335789999999999999 79999999999
Q ss_pred EeecC
Q 020242 90 NVSAR 94 (329)
Q Consensus 90 ~V~~~ 94 (329)
.|...
T Consensus 85 ~Vg~~ 89 (116)
T TIGR02375 85 QVGDP 89 (116)
T ss_pred EECCC
Confidence 99864
No 14
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.72 E-value=0.00012 Score=59.13 Aligned_cols=76 Identities=18% Similarity=0.104 Sum_probs=50.2
Q ss_pred cCCCceeeCCEEEEEEc-CCCCcEEEeCcccccC------CCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCC
Q 020242 14 LCLFSFFFFTFSVFNFA-AGNHDVTRVTQSSFNA------CNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQ 85 (329)
Q Consensus 14 a~~~tf~vGD~LvF~y~-~~~H~V~~V~~~~y~~------C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~Gm 85 (329)
....++++||+|.|.-. ...|+|+-.... ... ............|. ..++++.+|.|.|+|. .|++.||
T Consensus 16 P~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM 92 (99)
T TIGR02656 16 PAKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGM 92 (99)
T ss_pred CCEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCC
Confidence 35579999999999854 357998653211 100 00000001122343 4688999999999999 8999999
Q ss_pred eEEEEee
Q 020242 86 KLAINVS 92 (329)
Q Consensus 86 Kl~I~V~ 92 (329)
+..|.|.
T Consensus 93 ~G~I~V~ 99 (99)
T TIGR02656 93 VGKITVE 99 (99)
T ss_pred EEEEEEC
Confidence 9999883
No 15
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.63 E-value=0.00022 Score=59.80 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=53.3
Q ss_pred hhhccCCCceeeCCEEEEEEcC--CCCcEEEeCcccccCCCCCCCCcccCCC-CcEEEecccCceEEEcCCCCCCCCCCe
Q 020242 10 IDVFLCLFSFFFFTFSVFNFAA--GNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 10 y~~Wa~~~tf~vGD~LvF~y~~--~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmK 86 (329)
|..=.+..++++||+|.|.++. ..|+|.-.....|++ .......| ...++|+++|.|-|+|. -|=..|||
T Consensus 37 ~~F~P~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s-----~~~~~~~G~t~s~Tf~~~G~Y~Y~C~--pH~~~gM~ 109 (115)
T TIGR03102 37 FAFDPPAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE-----SERVSEEGTTYEHTFEEPGIYLYVCV--PHEALGMK 109 (115)
T ss_pred eeEeCCEEEECCCCEEEEEECCCCCCEEEEECCCCCccc-----cccccCCCCEEEEEecCCcEEEEEcc--CCCCCCCE
Confidence 4333455699999999999863 579996432234441 11112233 46899999999999998 47678999
Q ss_pred EEEEee
Q 020242 87 LAINVS 92 (329)
Q Consensus 87 l~I~V~ 92 (329)
..|.|.
T Consensus 110 G~I~V~ 115 (115)
T TIGR03102 110 GAVVVE 115 (115)
T ss_pred EEEEEC
Confidence 999983
No 16
>PRK02710 plastocyanin; Provisional
Probab=97.20 E-value=0.0012 Score=55.31 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=51.8
Q ss_pred hhhccCCCceeeCCEEEEEEc-CCCCcEEEeCcccccCCCCCCCCcccCCC-CcEEEecccCceEEEcCCCCCCCCCCeE
Q 020242 10 IDVFLCLFSFFFFTFSVFNFA-AGNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKL 87 (329)
Q Consensus 10 y~~Wa~~~tf~vGD~LvF~y~-~~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmKl 87 (329)
|.......++++||+|.|.-. ...|+++- .. .+.... ... ....| ..+++++.+|.|.|+|+ .|=+.|||.
T Consensus 42 ~~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~-~~--~~~~~~-~~~-~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G 114 (119)
T PRK02710 42 LAFEPSTLTIKAGDTVKWVNNKLAPHNAVF-DG--AKELSH-KDL-AFAPGESWEETFSEAGTYTYYCE--PHRGAGMVG 114 (119)
T ss_pred eEEeCCEEEEcCCCEEEEEECCCCCceEEe-cC--Cccccc-ccc-ccCCCCEEEEEecCCEEEEEEcC--CCccCCcEE
Confidence 444566679999999998763 45799853 11 111101 111 12334 35789999999999998 798899999
Q ss_pred EEEee
Q 020242 88 AINVS 92 (329)
Q Consensus 88 ~I~V~ 92 (329)
.|.|.
T Consensus 115 ~I~V~ 119 (119)
T PRK02710 115 KITVE 119 (119)
T ss_pred EEEEC
Confidence 99983
No 17
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.09 E-value=0.0027 Score=49.64 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=48.7
Q ss_pred CCCeeeecCEEEEeeCCC-CceEEEEccccccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242 188 RNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 265 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 265 (329)
+..++++||+|.|+.+.. .|+|...+....+ =..... ....| ...++++++|.|-|.|.... +||..|.|.
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 568999999999988754 7999865432111 000111 12233 35789999999999999854 599999884
No 18
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.07 E-value=0.0014 Score=57.13 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=50.3
Q ss_pred CCeeeecCEEEEeeCCC----CceEEEEccc-ccc------------CCCCCCCccc--CCCCCcEEEeCCCCcEEEEcC
Q 020242 189 NNNFSVGDILVFDYPAR----VHDVVEVTKA-AYD------------SCNSSSTISK--STNPPTRITLGTAGEHYFFCT 249 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~----~h~V~~V~~~-~y~------------~C~~~~~i~~--~~~G~~~v~L~~~G~~YFic~ 249 (329)
.++++.||+|.|...+. .|.....++. .+. .|....+... ......++++.++|.|||+|.
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~ 132 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCT 132 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcC
Confidence 36789999999988643 5666654322 110 1211111000 001245778889999999999
Q ss_pred CCCCCCCCCeEEEEec
Q 020242 250 FPGHCSAGQKLAVNVT 265 (329)
Q Consensus 250 ~~~HC~~GmKl~I~V~ 265 (329)
+++|=+.||...|.|.
T Consensus 133 ~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 133 YPGHAENGMYGKIVVK 148 (148)
T ss_pred ChhHHHCCCEEEEEEC
Confidence 9999999999999873
No 19
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.62 E-value=0.0052 Score=53.61 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=47.5
Q ss_pred CceeeCCEEEEEEcCC----CCcEEEeCcc-cc-----------cC-CCCCCCCc--ccCCCCcEEEecccCceEEEcCC
Q 020242 17 FSFFFFTFSVFNFAAG----NHDVTRVTQS-SF-----------NA-CNTTSPLS--RTTNSPASVTLTASGPHYFICSF 77 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~----~H~V~~V~~~-~y-----------~~-C~~~~~~~--~~~~G~~~v~L~~~G~~yFiCs~ 77 (329)
++++.||+|.|.+.+. .|......+. .+ .. |....+.. ....+..++++.++|.|||+|.+
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~ 133 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY 133 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence 3578999999999754 4555543211 11 00 21111000 00012346777899999999999
Q ss_pred CCCCCCCCeEEEEe
Q 020242 78 PGHCLGGQKLAINV 91 (329)
Q Consensus 78 ~~HC~~GmKl~I~V 91 (329)
++|=+.||+..|.|
T Consensus 134 pgH~~~GM~G~iiV 147 (148)
T TIGR03095 134 PGHAENGMYGKIVV 147 (148)
T ss_pred hhHHHCCCEEEEEE
Confidence 99999999998877
No 20
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.60 E-value=0.0092 Score=46.59 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=47.4
Q ss_pred cCCCceeeCCEEEEEEcCC-CCcEEEeCcccccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242 14 LCLFSFFFFTFSVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLAINV 91 (329)
Q Consensus 14 a~~~tf~vGD~LvF~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V 91 (329)
....++++||+|.|.-... .|+|.-.+....+ =..... ....|. .+++++++|.+-|+|..+- +||..|.|
T Consensus 10 P~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V 82 (83)
T TIGR02657 10 TPELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVV 82 (83)
T ss_pred CCEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEE
Confidence 3456899999999988743 7999654321111 000111 123333 5789999999999999854 49999887
Q ss_pred e
Q 020242 92 S 92 (329)
Q Consensus 92 ~ 92 (329)
.
T Consensus 83 ~ 83 (83)
T TIGR02657 83 E 83 (83)
T ss_pred C
Confidence 3
No 21
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.85 E-value=0.032 Score=50.83 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=50.8
Q ss_pred eeeecCEEEEeeCC---CCceEEEEccc-cccCCCCC---CCcc-------------cCCCCCcE--EEeC-CCCcEEEE
Q 020242 191 NFSVGDILVFDYPA---RVHDVVEVTKA-AYDSCNSS---STIS-------------KSTNPPTR--ITLG-TAGEHYFF 247 (329)
Q Consensus 191 ~f~vGD~LvF~y~~---~~h~V~~V~~~-~y~~C~~~---~~i~-------------~~~~G~~~--v~L~-~~G~~YFi 247 (329)
-+-.|-.+.|+|.+ -.|++..|... .+..+... +.|- ....|... +..+ .+|.||++
T Consensus 89 ~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Ywlv 168 (196)
T PF06525_consen 89 YVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLV 168 (196)
T ss_pred EEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEE
Confidence 45579888888854 36999988332 33334321 1110 01123322 1112 68999999
Q ss_pred cCCCCCCCCCCeEEEEecCCCC
Q 020242 248 CTFPGHCSAGQKLAVNVTGGSS 269 (329)
Q Consensus 248 c~~~~HC~~GmKl~I~V~~~~~ 269 (329)
|+..||-+.||-..+.|...-.
T Consensus 169 C~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 169 CGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred ccCCChhhcCCEEEEEEecCcc
Confidence 9999999999999999987653
No 22
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.84 E-value=0.039 Score=50.32 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=55.0
Q ss_pred ChhhccCCC---ceeeCCEEEEEEcCC---CCcEEEe-CcccccCCCCC---CCCc--------c-----cCCCCcE-EE
Q 020242 9 DIDVFLCLF---SFFFFTFSVFNFAAG---NHDVTRV-TQSSFNACNTT---SPLS--------R-----TTNSPAS-VT 64 (329)
Q Consensus 9 ~y~~Wa~~~---tf~vGD~LvF~y~~~---~H~V~~V-~~~~y~~C~~~---~~~~--------~-----~~~G~~~-v~ 64 (329)
||+--..++ -+-.|..|.|.|.+. .|+++.| +...+..|-.. +.+. . ...|... ..
T Consensus 77 nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~ 156 (196)
T PF06525_consen 77 NFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGV 156 (196)
T ss_pred eeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEE
Confidence 455444432 456799999999743 6998888 33333444221 1110 0 1123322 12
Q ss_pred e--cccCceEEEcCCCCCCCCCCeEEEEeecCCC
Q 020242 65 L--TASGPHYFICSFPGHCLGGQKLAINVSARGS 96 (329)
Q Consensus 65 L--~~~G~~yFiCs~~~HC~~GmKl~I~V~~~~~ 96 (329)
+ ..+|.||+.|++++|-+.||-..+.|...-.
T Consensus 157 ~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 157 YNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred EccCCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 2 2589999999999999999999999976543
No 23
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=94.66 E-value=0.63 Score=43.62 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=45.6
Q ss_pred eeeecCEEEE---eeCCCC------ceEEEEccccccCCCCC-CCcc------------------cCCCCCcEEEeCCCC
Q 020242 191 NFSVGDILVF---DYPARV------HDVVEVTKAAYDSCNSS-STIS------------------KSTNPPTRITLGTAG 242 (329)
Q Consensus 191 ~f~vGD~LvF---~y~~~~------h~V~~V~~~~y~~C~~~-~~i~------------------~~~~G~~~v~L~~~G 242 (329)
..++||.|-+ .|+.+. .-+++|+++.|+.|+.. .+-. .++--..-+.. ++|
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 3456888876 454321 24567999999999962 2211 11110111122 456
Q ss_pred -cEEEEcCC-----------CCCCC-CCCeEEEEecCCCC
Q 020242 243 -EHYFFCTF-----------PGHCS-AGQKLAVNVTGGSS 269 (329)
Q Consensus 243 -~~YFic~~-----------~~HC~-~GmKl~I~V~~~~~ 269 (329)
.||||++- ++-|. ..||+.+.|..+..
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 68888763 45666 46999999987554
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=92.92 E-value=0.16 Score=43.87 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=39.5
Q ss_pred CCCeeeecCEEEEeeCCC---CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCCCCCCC-CCeE
Q 020242 188 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCSA-GQKL 260 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~-GmKl 260 (329)
+..+++.||.+.+.+.+. .|.+.. .+|+ .. .....|. .+++.+++|.|.|+|+. ||.. -|-.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~~~H~~~ 129 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPKNIHLPG 129 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CChhhcCCC
Confidence 668999999998877532 255442 2221 11 1222233 35667899999999987 6753 2333
Q ss_pred EEEe
Q 020242 261 AVNV 264 (329)
Q Consensus 261 ~I~V 264 (329)
.+||
T Consensus 130 ~~~~ 133 (135)
T TIGR03096 130 SLNV 133 (135)
T ss_pred cccc
Confidence 4444
No 25
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=92.53 E-value=0.044 Score=47.82 Aligned_cols=76 Identities=25% Similarity=0.420 Sum_probs=46.5
Q ss_pred CeeeecCEEEE---eeCCC--------CceEEEEccccccCCCCCC-Cccc------C-CCCCcEEEe------------
Q 020242 190 NNFSVGDILVF---DYPAR--------VHDVVEVTKAAYDSCNSSS-TISK------S-TNPPTRITL------------ 238 (329)
Q Consensus 190 ~~f~vGD~LvF---~y~~~--------~h~V~~V~~~~y~~C~~~~-~i~~------~-~~G~~~v~L------------ 238 (329)
..+++||.|-| +|... ...+++|++++|+.|+... .... . ..|..+|++
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 47789999998 45433 4578889999999999643 2111 1 124444433
Q ss_pred -CCCC-cEEEEcCC-----------CCCCC-CCCeEEEEec
Q 020242 239 -GTAG-EHYFFCTF-----------PGHCS-AGQKLAVNVT 265 (329)
Q Consensus 239 -~~~G-~~YFic~~-----------~~HC~-~GmKl~I~V~ 265 (329)
=++| .||||++- +|-|. ..|||.|.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 1456 68888764 23477 5799999885
No 26
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=92.17 E-value=0.15 Score=46.09 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=27.3
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEecCCCC
Q 020242 239 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGSS 269 (329)
Q Consensus 239 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~ 269 (329)
..+|.||++|+..||-+.||=..+.|...-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 3799999999999999999999888877543
No 27
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=92.09 E-value=0.71 Score=41.83 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=25.8
Q ss_pred cccCceEEEcCCCCCCCCCCeEEEEeecC
Q 020242 66 TASGPHYFICSFPGHCLGGQKLAINVSAR 94 (329)
Q Consensus 66 ~~~G~~yFiCs~~~HC~~GmKl~I~V~~~ 94 (329)
..+|.||++|+.++|-+.||=..+.|...
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 36899999999999999999988888754
No 28
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=91.74 E-value=0.27 Score=43.38 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCCeeeecCEEEEeeCCC---CceEEEE----ccccccCC----CCC----CC--cccCCCCCcEEEeCCCCcEEEEcCC
Q 020242 188 RNNNFSVGDILVFDYPAR---VHDVVEV----TKAAYDSC----NSS----ST--ISKSTNPPTRITLGTAGEHYFFCTF 250 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~---~h~V~~V----~~~~y~~C----~~~----~~--i~~~~~G~~~v~L~~~G~~YFic~~ 250 (329)
++..++.|.+++|.-++. .|.+..- +..-+..= +.. +. +....+|..++.++.+|.|=|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i 142 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI 142 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence 567888899988866543 3444432 00001000 110 10 1122345567889999999999999
Q ss_pred CCCCCCCCeEEEEec
Q 020242 251 PGHCSAGQKLAVNVT 265 (329)
Q Consensus 251 ~~HC~~GmKl~I~V~ 265 (329)
+||-+.||...|+|.
T Consensus 143 PGHy~AGM~g~itV~ 157 (158)
T COG4454 143 PGHYEAGMVGEITVS 157 (158)
T ss_pred CCcccCCcEEEEEeC
Confidence 999999999999986
No 29
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=89.35 E-value=0.38 Score=41.54 Aligned_cols=60 Identities=7% Similarity=-0.020 Sum_probs=36.0
Q ss_pred ChhhccCCCceeeCCEEEEEEcCC---CCcEEEeCcccccCCCCCCCCcccCCCCc---EEEecccCceEEEcCC
Q 020242 9 DIDVFLCLFSFFFFTFSVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSPA---SVTLTASGPHYFICSF 77 (329)
Q Consensus 9 ~y~~Wa~~~tf~vGD~LvF~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~~G~~yFiCs~ 77 (329)
+|..=.+.++++.||.|.+.|.+. .|.+.. .+|. . ......|.. +++.+++|.|+|+|..
T Consensus 55 n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 55 NVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred eeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 344445567889999999988632 244321 1221 1 112233432 4666999999999987
No 30
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=89.11 E-value=0.53 Score=41.54 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=50.3
Q ss_pred cCCCceeeCCEEEEEEcCCCCcEEEeCc--cccc-----CC--------CCCCCC--cccCCCCcEEEecccCceEEEcC
Q 020242 14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQ--SSFN-----AC--------NTTSPL--SRTTNSPASVTLTASGPHYFICS 76 (329)
Q Consensus 14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~--~~y~-----~C--------~~~~~~--~~~~~G~~~v~L~~~G~~yFiCs 76 (329)
.+...++.|-+++|.-.+...-+.+++- .+.. .= +..+.+ ..-.+|.-++.+...|.|=|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 4567889999999988755333333311 1111 00 000011 11123334688888999999999
Q ss_pred CCCCCCCCCeEEEEee
Q 020242 77 FPGHCLGGQKLAINVS 92 (329)
Q Consensus 77 ~~~HC~~GmKl~I~V~ 92 (329)
+++|-+.||...|+|.
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999985
No 31
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=87.74 E-value=0.43 Score=38.46 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=30.6
Q ss_pred cCCCceeeCCEEEEEEcC---CCCcEEEeCcccccCCCCCCCCcccCCCC-cEEEe--cccCceEEEcCCCCCCCCCCeE
Q 020242 14 LCLFSFFFFTFSVFNFAA---GNHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTL--TASGPHYFICSFPGHCLGGQKL 87 (329)
Q Consensus 14 a~~~tf~vGD~LvF~y~~---~~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L--~~~G~~yFiCs~~~HC~~GmKl 87 (329)
.+..+++.|+.+.+.+.+ ..|+++. .+ ++ -......|. .++++ .++|.|=|+|+++.+ ||.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--~~------~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G 100 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVI-PD--LG------ISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKG 100 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEE-GG--GT------EEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEE-CC--Cc------eEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----cee
Confidence 345689999966666653 2455522 21 11 011233343 35555 899999999997663 666
Q ss_pred EEEe
Q 020242 88 AINV 91 (329)
Q Consensus 88 ~I~V 91 (329)
.|.|
T Consensus 101 ~liV 104 (104)
T PF13473_consen 101 TLIV 104 (104)
T ss_dssp ----
T ss_pred cccC
Confidence 5544
No 32
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=87.35 E-value=1.4 Score=42.91 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=49.1
Q ss_pred CCeeeecCEEEEeeCCC-----CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCC----CCCCC
Q 020242 189 NNNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFP----GHCSA 256 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~----~HC~~ 256 (329)
.++++.||.|.+.+.+. .|++..=-....+ ....+.....|. ..|+++.+|++||-|... .|=..
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 46899999999888654 4655531100000 001111233333 367788999999999953 47788
Q ss_pred CCeEEEEecCCC
Q 020242 257 GQKLAVNVTGGS 268 (329)
Q Consensus 257 GmKl~I~V~~~~ 268 (329)
||...|.|....
T Consensus 137 Gl~G~liV~~~~ 148 (311)
T TIGR02376 137 GMNGAIMVLPRE 148 (311)
T ss_pred CcceEEEeeccC
Confidence 999999998653
No 33
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=86.18 E-value=0.62 Score=37.51 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCCeeeecCEEEEeeC---CCCceEEEEccccccCCCCCCCcccCCCCC-cEEEe--CCCCcEEEEcCCCCCCCCCCeEE
Q 020242 188 RNNNFSVGDILVFDYP---ARVHDVVEVTKAAYDSCNSSSTISKSTNPP-TRITL--GTAGEHYFFCTFPGHCSAGQKLA 261 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~---~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~-~~v~L--~~~G~~YFic~~~~HC~~GmKl~ 261 (329)
+..+++.|+.+.+.+. ...|++.. .+- +.......|. .++++ .++|.|=|+|+...+ ||..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~--------~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~ 101 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVI-PDL--------GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT 101 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEE-GGG--------TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEE-CCC--------ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence 5689999994444443 34566652 221 1112233343 34555 899999999997553 6666
Q ss_pred EEe
Q 020242 262 VNV 264 (329)
Q Consensus 262 I~V 264 (329)
|.|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 34
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=85.43 E-value=0.55 Score=40.96 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=43.6
Q ss_pred ceeeCCEEEEEEc---CC--------CCcEEEeCcccccCCCCCC-CCccc-------CCCCcEEEe--c----------
Q 020242 18 SFFFFTFSVFNFA---AG--------NHDVTRVTQSSFNACNTTS-PLSRT-------TNSPASVTL--T---------- 66 (329)
Q Consensus 18 tf~vGD~LvF~y~---~~--------~H~V~~V~~~~y~~C~~~~-~~~~~-------~~G~~~v~L--~---------- 66 (329)
.+++||.|-|-=. .. ...+++|++++|+.|+... ....+ ..|..+|++ .
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 6788999988643 22 3458889999999999632 21111 123333333 1
Q ss_pred -ccC-ceEEEcCCC-----------CCCC-CCCeEEEEee
Q 020242 67 -ASG-PHYFICSFP-----------GHCL-GGQKLAINVS 92 (329)
Q Consensus 67 -~~G-~~yFiCs~~-----------~HC~-~GmKl~I~V~ 92 (329)
++| .||||++-. |-|. +.|||.|.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 155 577887652 2263 5689988874
No 35
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=84.80 E-value=4 Score=34.83 Aligned_cols=29 Identities=38% Similarity=0.688 Sum_probs=21.8
Q ss_pred cEEEec----ccCc-eEEEcCCCCCCCCCCeEEEE
Q 020242 61 ASVTLT----ASGP-HYFICSFPGHCLGGQKLAIN 90 (329)
Q Consensus 61 ~~v~L~----~~G~-~yFiCs~~~HC~~GmKl~I~ 90 (329)
++|+++ ++|. |=|||++++|=. .||..+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 456665 4676 779999999975 6988764
No 36
>PRK02888 nitrous-oxide reductase; Validated
Probab=83.06 E-value=4.3 Score=43.29 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=43.8
Q ss_pred CCCeeeecCEEEEeeCCC------CceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCCCCCC---
Q 020242 188 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFPGHCS--- 255 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~~HC~--- 255 (329)
...++++||.+.|...+- .|.... ..|. .......| ...|+.+++|.|||+|+. .|.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H 623 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALH 623 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCc
Confidence 457899999999998652 243332 1111 11112223 345778999999999998 344
Q ss_pred CCCeEEEEecC
Q 020242 256 AGQKLAVNVTG 266 (329)
Q Consensus 256 ~GmKl~I~V~~ 266 (329)
.+|+..|.|..
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 37999998864
No 37
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=82.89 E-value=3.1 Score=40.44 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=47.3
Q ss_pred CceeeCCEEEEEEcCC-----CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCC----CCCCCC
Q 020242 17 FSFFFFTFSVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFP----GHCLGG 84 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~----~HC~~G 84 (329)
.+++.||+|++++.+. .|++..=-....+ ..........|. ..|+++.+|++||-|... .|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 4789999999999764 3554321000000 001111233343 357888899999999953 477889
Q ss_pred CeEEEEeecC
Q 020242 85 QKLAINVSAR 94 (329)
Q Consensus 85 mKl~I~V~~~ 94 (329)
|...|.|...
T Consensus 138 l~G~liV~~~ 147 (311)
T TIGR02376 138 MNGAIMVLPR 147 (311)
T ss_pred cceEEEeecc
Confidence 9999999753
No 38
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=82.57 E-value=5.4 Score=34.04 Aligned_cols=29 Identities=45% Similarity=0.837 Sum_probs=21.9
Q ss_pred cEEEeC----CCCc-EEEEcCCCCCCCCCCeEEEE
Q 020242 234 TRITLG----TAGE-HYFFCTFPGHCSAGQKLAVN 263 (329)
Q Consensus 234 ~~v~L~----~~G~-~YFic~~~~HC~~GmKl~I~ 263 (329)
+.|+++ ++|. |=|||+++||=. .||..+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 445554 4675 779999999996 7988765
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=81.82 E-value=0.58 Score=38.97 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=48.1
Q ss_pred CCeeeecCEEEEeeCCC---CceEEE--E--ccc-ccc--CCCCCCCcccCCCCCcEEEeCC-CCcEEEEcCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPAR---VHDVVE--V--TKA-AYD--SCNSSSTISKSTNPPTRITLGT-AGEHYFFCTFPGHCSAG 257 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~---~h~V~~--V--~~~-~y~--~C~~~~~i~~~~~G~~~v~L~~-~G~~YFic~~~~HC~~G 257 (329)
-++++.||.|.+.+.+. .+++.. + ... ..| ......+|....+-...|+++. +|.+||-|...+|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 47899999999988643 344443 1 111 011 1111112222122234678888 99999999998854489
Q ss_pred CeEEEEecCC
Q 020242 258 QKLAVNVTGG 267 (329)
Q Consensus 258 mKl~I~V~~~ 267 (329)
|-.+|.|...
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9999988653
No 40
>PRK02888 nitrous-oxide reductase; Validated
Probab=78.08 E-value=5.3 Score=42.65 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=41.3
Q ss_pred CCceeeCCEEEEEEcCC--CCcEEEeCcccccCCCCCCCC-cccCCCC---cEEEecccCceEEEcCCCCCCC---CCCe
Q 020242 16 LFSFFFFTFSVFNFAAG--NHDVTRVTQSSFNACNTTSPL-SRTTNSP---ASVTLTASGPHYFICSFPGHCL---GGQK 86 (329)
Q Consensus 16 ~~tf~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~-~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~---~GmK 86 (329)
..++++||.|.|...+- .-||. -+|. -..-.+ .....|. .+|+.+++|.|||+|+.. |. .+|+
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DVi----HGF~--Ip~~nI~~dv~PG~t~svtF~adkPGvy~~~Ctef--CGa~H~~M~ 627 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLT----HGFA--IPNYGVNMEVAPQATASVTFTADKPGVYWYYCTWF--CHALHMEMR 627 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccc----ccee--ecccCccEEEcCCceEEEEEEcCCCEEEEEECCcc--cccCcccce
Confidence 35788999999999751 01221 0111 111112 1122333 356778999999999983 43 3699
Q ss_pred EEEEeec
Q 020242 87 LAINVSA 93 (329)
Q Consensus 87 l~I~V~~ 93 (329)
..|.|..
T Consensus 628 G~~iVep 634 (635)
T PRK02888 628 GRMLVEP 634 (635)
T ss_pred EEEEEEe
Confidence 8888863
No 41
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=77.11 E-value=1 Score=37.47 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=45.8
Q ss_pred CceeeCCEEEEEEcCC---CCcEEE--e--Ccc-cccC--CCCCCCCcccCCCCcEEEecc-cCceEEEcCCCCCCCCCC
Q 020242 17 FSFFFFTFSVFNFAAG---NHDVTR--V--TQS-SFNA--CNTTSPLSRTTNSPASVTLTA-SGPHYFICSFPGHCLGGQ 85 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~---~H~V~~--V--~~~-~y~~--C~~~~~~~~~~~G~~~v~L~~-~G~~yFiCs~~~HC~~Gm 85 (329)
++++.||+|.+++.+. .+++.- + ... ..|. .....++..-.+-...|+++. .|.+||-|-...|=..||
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL 107 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGL 107 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTE
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcC
Confidence 4789999999999743 233322 1 111 0111 111111211111224688888 999999999988645999
Q ss_pred eEEEEeec
Q 020242 86 KLAINVSA 93 (329)
Q Consensus 86 Kl~I~V~~ 93 (329)
...|.|..
T Consensus 108 ~G~~iV~~ 115 (117)
T PF07732_consen 108 YGAIIVEP 115 (117)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEcC
Confidence 99988864
No 42
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=75.57 E-value=6.7 Score=36.88 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=43.8
Q ss_pred eeeCCEEEEE---EcCC------CCcEEEeCcccccCCCC-CCCCc------------------ccCCCCcEEEecccCc
Q 020242 19 FFFFTFSVFN---FAAG------NHDVTRVTQSSFNACNT-TSPLS------------------RTTNSPASVTLTASGP 70 (329)
Q Consensus 19 f~vGD~LvF~---y~~~------~H~V~~V~~~~y~~C~~-~~~~~------------------~~~~G~~~v~L~~~G~ 70 (329)
+++||.|-+- |+.+ ..-+++|++.+|+.|+. +.+.. .++--..-+.+..-.+
T Consensus 47 v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~~ 126 (233)
T KOG3858|consen 47 VQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGHT 126 (233)
T ss_pred eccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCCe
Confidence 3446776553 3321 23478889999999996 22211 1121112234433335
Q ss_pred eEEEcCC-----------CCCCC-CCCeEEEEeecCCC
Q 020242 71 HYFICSF-----------PGHCL-GGQKLAINVSARGS 96 (329)
Q Consensus 71 ~yFiCs~-----------~~HC~-~GmKl~I~V~~~~~ 96 (329)
||||++- ++-|. ..||+.+.|.....
T Consensus 127 YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 127 YYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred EEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 6777654 34554 45999999986544
No 43
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=74.50 E-value=12 Score=33.92 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=53.5
Q ss_pred eEEEEeccCCcccCCCCCcCcccc------cCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcc-cCCCCC--
Q 020242 163 ATHVVGGALGWTVPPNASVGYQNW------ARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTIS-KSTNPP-- 233 (329)
Q Consensus 163 ~~~~VGg~~GW~~~~~~~~~Y~~W------a~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~-~~~~G~-- 233 (329)
+..++|-.=.|.+. |.+. .+...+.+|+.+.|.-.+. ||. .+|---+. .++ ..-.|.
T Consensus 92 ~i~v~~~qw~W~f~------Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~--DV~----Hsf~ip~~--~~k~da~PG~~~ 157 (201)
T TIGR02866 92 KVKVEGHQWYWSFD------YPESRRGFTTVNELVVPAGTPVRLQVTSK--DVI----HSFWVPEL--GGKIDAIPGQYN 157 (201)
T ss_pred EEEEEEEEeEEEEE------cCCcCCCccccCEEEEEcCCEEEEEEEeC--chh----hccccccc--CceEEecCCcEE
Confidence 45666777789862 4432 1345788999999987642 333 11111011 111 111232
Q ss_pred -cEEEeCCCCcEEEEcCCCCCCC---CCCeEEEEecC
Q 020242 234 -TRITLGTAGEHYFFCTFPGHCS---AGQKLAVNVTG 266 (329)
Q Consensus 234 -~~v~L~~~G~~YFic~~~~HC~---~GmKl~I~V~~ 266 (329)
..++.+++|.|++.|+. .|. ..|++.|.|..
T Consensus 158 ~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 158 ALWFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVE 192 (201)
T ss_pred EEEEEeCCCEEEEEEehh--hCCcCccCCeEEEEEEC
Confidence 35678899999999998 454 55999999875
No 44
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=72.09 E-value=5.5 Score=41.64 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=50.5
Q ss_pred CCCeeeecCEEEEeeCCCC----ceEEE--E--cccc-ccC--CCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCC
Q 020242 188 RNNNFSVGDILVFDYPARV----HDVVE--V--TKAA-YDS--CNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSA 256 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~~----h~V~~--V--~~~~-y~~--C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~ 256 (329)
..++++.||.|+++..++. +++.. + .... .|. ....-+|....+-...|+++.+|++||-|....|-..
T Consensus 32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 111 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSA 111 (541)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhc
Confidence 3578999999999876542 22221 1 1111 111 0011122222222246788999999999999999999
Q ss_pred CCeEEEEecCCC
Q 020242 257 GQKLAVNVTGGS 268 (329)
Q Consensus 257 GmKl~I~V~~~~ 268 (329)
||...|.|....
T Consensus 112 Gl~G~liV~~~~ 123 (541)
T TIGR03388 112 GLYGSLIVDVPD 123 (541)
T ss_pred cceEEEEEecCC
Confidence 999999998653
No 45
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=70.34 E-value=6.3 Score=32.98 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCCeeeecCEEEEeeCC--CCceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCCCCCCCC---Ce
Q 020242 188 RNNNFSVGDILVFDYPA--RVHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCSAG---QK 259 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~--~~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~G---mK 259 (329)
+...+..|+.+.|...+ -.|+... .+-..+ ...-.|. ..++.+++|.|++.|.. .|..| |+
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~ 114 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWI-PELGIK--------MDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMP 114 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEE-TTCTEE--------EEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-E
T ss_pred ceecccccceEeEEEEcCCccccccc-cccCcc--------cccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCe
Confidence 44567889999988864 3466653 111111 0111233 45778999999999987 88877 88
Q ss_pred EEEEec
Q 020242 260 LAVNVT 265 (329)
Q Consensus 260 l~I~V~ 265 (329)
+.|.|.
T Consensus 115 ~~v~VV 120 (120)
T PF00116_consen 115 GKVIVV 120 (120)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888773
No 46
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=67.21 E-value=9.1 Score=36.27 Aligned_cols=83 Identities=14% Similarity=0.061 Sum_probs=50.0
Q ss_pred cccCCChhh---ccCC-CceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcC
Q 020242 4 AELISDIDV---FLCL-FSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICS 76 (329)
Q Consensus 4 ~~~~~~y~~---Wa~~-~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs 76 (329)
|-|...|-+ +..+ ..+-+|..|.|+.... ||. -+|.-=.....+.. -.|. ..++.+++|.|+.+|+
T Consensus 122 w~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~--DVi----HsF~IP~l~~k~d~-iPG~~~~~~~~~~~~G~Y~g~Ca 194 (247)
T COG1622 122 WKWLFIYPDYGIATVNELVLPVGRPVRFKLTSA--DVI----HSFWIPQLGGKIDA-IPGMTTELWLTANKPGTYRGICA 194 (247)
T ss_pred EEEEEEccCcCccccceEEEeCCCeEEEEEEec--hhc----eeEEecCCCceeee-cCCceEEEEEecCCCeEEEEEcH
Confidence 445555543 2222 4888999999999853 442 12221111111111 1222 2478899999999998
Q ss_pred CCCCCCCC---CeEEEEeecCC
Q 020242 77 FPGHCLGG---QKLAINVSARG 95 (329)
Q Consensus 77 ~~~HC~~G---mKl~I~V~~~~ 95 (329)
. .|..| |++.|.|....
T Consensus 195 e--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 195 E--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred h--hcCCCcccceEEEEEEcHH
Confidence 6 66655 99999998653
No 47
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=65.70 E-value=9.7 Score=34.52 Aligned_cols=81 Identities=14% Similarity=-0.043 Sum_probs=48.7
Q ss_pred ccccCCChhhcc------CCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCc-ccCCCC---cEEEecccCceE
Q 020242 3 RAELISDIDVFL------CLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLS-RTTNSP---ASVTLTASGPHY 72 (329)
Q Consensus 3 ~~~~~~~y~~Wa------~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~-~~~~G~---~~v~L~~~G~~y 72 (329)
+|.|...|.+.. ....+.+|+.+.|...+ .||.- +| +-..-.++ ..-.|. ..++.+++|.++
T Consensus 99 qw~W~f~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts--~DV~H----sf--~ip~~~~k~da~PG~~~~~~~~~~~~G~y~ 170 (201)
T TIGR02866 99 QWYWSFDYPESRRGFTTVNELVVPAGTPVRLQVTS--KDVIH----SF--WVPELGGKIDAIPGQYNALWFNADEPGVYY 170 (201)
T ss_pred EeEEEEEcCCcCCCccccCEEEEEcCCEEEEEEEe--Cchhh----cc--cccccCceEEecCCcEEEEEEEeCCCEEEE
Confidence 466777776541 12367888999888864 34421 11 11111111 112343 246789999999
Q ss_pred EEcCCCCCCC---CCCeEEEEeec
Q 020242 73 FICSFPGHCL---GGQKLAINVSA 93 (329)
Q Consensus 73 FiCs~~~HC~---~GmKl~I~V~~ 93 (329)
+.|+. .|. ..|++.|.|..
T Consensus 171 ~~c~e--~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 171 GYCAE--LCGAGHSLMLFKVVVVE 192 (201)
T ss_pred EEehh--hCCcCccCCeEEEEEEC
Confidence 99997 454 44999998874
No 48
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=65.03 E-value=8.8 Score=32.09 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=38.6
Q ss_pred CceeeCCEEEEEEcCC--CCcEEEeCcccccCCCCCCCCc-ccCCCC---cEEEecccCceEEEcCCCCCCCCC---CeE
Q 020242 17 FSFFFFTFSVFNFAAG--NHDVTRVTQSSFNACNTTSPLS-RTTNSP---ASVTLTASGPHYFICSFPGHCLGG---QKL 87 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~-~~~~G~---~~v~L~~~G~~yFiCs~~~HC~~G---mKl 87 (329)
..+..|+.+.|+..+. .|+... . ++ .++ ....|. ..++.+++|.+++.|+. -|..| |++
T Consensus 48 l~lp~g~~v~~~ltS~DViHsf~i-p--~~-------~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~ 115 (120)
T PF00116_consen 48 LVLPAGQPVRFHLTSEDVIHSFWI-P--EL-------GIKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPG 115 (120)
T ss_dssp EEEETTSEEEEEEEESSS-EEEEE-T--TC-------TEEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EE
T ss_pred ecccccceEeEEEEcCCccccccc-c--cc-------CcccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeE
Confidence 3567888888888742 344322 1 11 111 112344 35788999999999986 78777 888
Q ss_pred EEEee
Q 020242 88 AINVS 92 (329)
Q Consensus 88 ~I~V~ 92 (329)
.|.|.
T Consensus 116 ~v~VV 120 (120)
T PF00116_consen 116 KVIVV 120 (120)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88773
No 49
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=63.82 E-value=16 Score=38.82 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=53.7
Q ss_pred CcccCCCCCcCcccccCCCeeeecCEEEEeeCCCC---ceEE------EE-ccc-cccCCCCCCCcccCCCC--CcEEEe
Q 020242 172 GWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV---HDVV------EV-TKA-AYDSCNSSSTISKSTNP--PTRITL 238 (329)
Q Consensus 172 GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~---h~V~------~V-~~~-~y~~C~~~~~i~~~~~G--~~~v~L 238 (329)
-|++. ...|.. ....+++.||.+.+.+.+.. |.+. +| ... .|.. ..+.+.+.-.+ ...|.+
T Consensus 487 ~wtiN---G~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 487 AWSFD---GEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTA 560 (587)
T ss_pred EEEEC---CccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEEC
Confidence 39884 233443 24588999999999997542 3222 22 211 1110 00111111122 235678
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242 239 GTAGEHYFFCTFPGHCSAGQKLAVNVT 265 (329)
Q Consensus 239 ~~~G~~YFic~~~~HC~~GmKl~I~V~ 265 (329)
+.+|.++|=|....|=+.||--.|.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 899999999999999999999888773
No 50
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=62.72 E-value=14 Score=38.70 Aligned_cols=78 Identities=6% Similarity=0.023 Sum_probs=47.9
Q ss_pred CceeeCCEEEEEEcCCC----CcEEE--eC--cccc-cC-CC-CCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCC
Q 020242 17 FSFFFFTFSVFNFAAGN----HDVTR--VT--QSSF-NA-CN-TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~~----H~V~~--V~--~~~y-~~-C~-~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~Gm 85 (329)
++++.||.|++++.+.. +++.- +. ...| |. -. ..-++....+-...|+++..|++||-|-...|-..||
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl 113 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGL 113 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccc
Confidence 47899999999987542 22210 01 0111 11 00 0011211122224688899999999999999999999
Q ss_pred eEEEEeecC
Q 020242 86 KLAINVSAR 94 (329)
Q Consensus 86 Kl~I~V~~~ 94 (329)
...|.|...
T Consensus 114 ~G~liV~~~ 122 (541)
T TIGR03388 114 YGSLIVDVP 122 (541)
T ss_pred eEEEEEecC
Confidence 999999754
No 51
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=61.88 E-value=19 Score=34.04 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=56.9
Q ss_pred eEEEEeccCCcccCCCCCcCccccc-CCCeeeecCEEEEeeCCC--CceEEEEccccccCCCCCCCcccC--CCCCcEEE
Q 020242 163 ATHVVGGALGWTVPPNASVGYQNWA-RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYDSCNSSSTISKS--TNPPTRIT 237 (329)
Q Consensus 163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa-~~~~f~vGD~LvF~y~~~--~h~V~~V~~~~y~~C~~~~~i~~~--~~G~~~v~ 237 (329)
+..++|-.-.|.+.-. +|.-+. +...+.+|..+.|+-.+. -|+...- .....+... ..-...++
T Consensus 114 ~i~v~~~qw~W~f~Yp---~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP--------~l~~k~d~iPG~~~~~~~~ 182 (247)
T COG1622 114 TIEVTAYQWKWLFIYP---DYGIATVNELVLPVGRPVRFKLTSADVIHSFWIP--------QLGGKIDAIPGMTTELWLT 182 (247)
T ss_pred EEEEEEEEEEEEEEcc---CcCccccceEEEeCCCeEEEEEEechhceeEEec--------CCCceeeecCCceEEEEEe
Confidence 4556677778876311 122222 446899999999999764 2443321 111111111 11123567
Q ss_pred eCCCCcEEEEcCCCCCCCC---CCeEEEEecCCC
Q 020242 238 LGTAGEHYFFCTFPGHCSA---GQKLAVNVTGGS 268 (329)
Q Consensus 238 L~~~G~~YFic~~~~HC~~---GmKl~I~V~~~~ 268 (329)
.+++|.|+.+|.. .|.. .|++.|.|....
T Consensus 183 ~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 183 ANKPGTYRGICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred cCCCeEEEEEcHh--hcCCCcccceEEEEEEcHH
Confidence 7899999999987 6765 499999998854
No 52
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=61.69 E-value=5.2 Score=26.74 Aligned_cols=19 Identities=21% Similarity=0.786 Sum_probs=11.4
Q ss_pred cccccCCCeeeecCEEEEe
Q 020242 183 YQNWARNNNFSVGDILVFD 201 (329)
Q Consensus 183 Y~~Wa~~~~f~vGD~LvF~ 201 (329)
|..|..++....||.|.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5679999999999999863
No 53
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=57.28 E-value=19 Score=38.28 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCccccCCChhhccC--CCceeeCCEEEEEEcCC---CCcE------EEeCcccccCCCCCCCCcccCCCC---cEEEec
Q 020242 1 MDRAELISDIDVFLC--LFSFFFFTFSVFNFAAG---NHDV------TRVTQSSFNACNTTSPLSRTTNSP---ASVTLT 66 (329)
Q Consensus 1 ~~~~~~~~~y~~Wa~--~~tf~vGD~LvF~y~~~---~H~V------~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~ 66 (329)
|.|..|..|=..|.. ..+++.||.|.+.+.+. .|.+ ++|...+-.. ...........|. ..|.++
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~-~~~~dTv~V~Pg~t~~~~f~ad 561 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEF-QVRKHTVDVPPGGKRSFRVTAD 561 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcc-cccCCceeeCCCCEEEEEEECC
Confidence 344456656555553 46899999999999854 2222 2332111000 0000011122232 357788
Q ss_pred ccCceEEEcCCCCCCCCCCeEEEEe
Q 020242 67 ASGPHYFICSFPGHCLGGQKLAINV 91 (329)
Q Consensus 67 ~~G~~yFiCs~~~HC~~GmKl~I~V 91 (329)
.+|.++|-|-+..|=+.||--.|.|
T Consensus 562 ~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 562 ALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 8999999999999999999887776
No 54
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=56.03 E-value=23 Score=37.76 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=51.1
Q ss_pred CCeeeecCEEEEeeCCCC--------ceEEEEcccccc-----CCCCCCCcccCCCCCcEEEe-CCCCcEEEEcCCCCCC
Q 020242 189 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYD-----SCNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHC 254 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~~--------h~V~~V~~~~y~-----~C~~~~~i~~~~~G~~~v~L-~~~G~~YFic~~~~HC 254 (329)
.++++.||+|+.+..+.. |-+.+......| .| +|....+=..+|++ +..|++||=+....+-
T Consensus 61 tI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~ 136 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHR 136 (596)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhh
Confidence 478999999999875432 555543211122 33 33332222346788 4799999999888888
Q ss_pred CCCCeEEEEecCCC
Q 020242 255 SAGQKLAVNVTGGS 268 (329)
Q Consensus 255 ~~GmKl~I~V~~~~ 268 (329)
..|+-..|.|....
T Consensus 137 ~~Gl~GalII~~~~ 150 (596)
T PLN00044 137 AAGGYGAITINNRD 150 (596)
T ss_pred hCcCeeEEEEcCcc
Confidence 89999999998654
No 55
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=55.05 E-value=9.8 Score=39.14 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=10.2
Q ss_pred CCCCCCCeEEEEecCC
Q 020242 252 GHCSAGQKLAVNVTGG 267 (329)
Q Consensus 252 ~HC~~GmKl~I~V~~~ 267 (329)
.+|+-|| ++|.+.+.
T Consensus 221 k~mE~G~-IsV~~DE~ 235 (465)
T PF01690_consen 221 KDMEFGS-ISVSLDEH 235 (465)
T ss_pred cceeeee-EEEEEecc
Confidence 7899996 45666553
No 56
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=54.17 E-value=6 Score=26.40 Aligned_cols=18 Identities=0% Similarity=-0.284 Sum_probs=10.8
Q ss_pred hhhccCCCceeeCCEEEE
Q 020242 10 IDVFLCLFSFFFFTFSVF 27 (329)
Q Consensus 10 y~~Wa~~~tf~vGD~LvF 27 (329)
|..|..+++...||+|.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 467999999999999985
No 57
>PLN02604 oxidoreductase
Probab=53.53 E-value=18 Score=38.14 Aligned_cols=81 Identities=10% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCCeeeecCEEEEeeCCCC----ceEEE--Ecc--cc-ccCCC--CCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCC
Q 020242 188 RNNNFSVGDILVFDYPARV----HDVVE--VTK--AA-YDSCN--SSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSA 256 (329)
Q Consensus 188 ~~~~f~vGD~LvF~y~~~~----h~V~~--V~~--~~-y~~C~--~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~ 256 (329)
.-++++.||.|++++.+.. |++.. +.+ .. +|.=. ..-+|....+-...|+++.+|++||=|....|-..
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 4578999999999886541 23331 100 11 11100 00012211112246778899999999999999999
Q ss_pred CCeEEEEecCCC
Q 020242 257 GQKLAVNVTGGS 268 (329)
Q Consensus 257 GmKl~I~V~~~~ 268 (329)
||...|.|....
T Consensus 135 Gl~G~liV~~~~ 146 (566)
T PLN02604 135 GLYGSIRVSLPR 146 (566)
T ss_pred CCeEEEEEEecC
Confidence 999999998643
No 58
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=52.86 E-value=37 Score=36.24 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=48.5
Q ss_pred CceeeCCEEEEEEcCCC--------CcEEEeCcccccC-CCCCCCCcccCCCCcEEEe-cccCceEEEcCCCCCCCCCCe
Q 020242 17 FSFFFFTFSVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~~--------H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFiCs~~~HC~~GmK 86 (329)
++++.||+|+.+..+.. |-+.|-.....|. ....-+|..-.+-..+|++ +..|++||-+....+-..||.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~ 141 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGY 141 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCe
Confidence 47899999999886431 4444321111111 0001123222333357888 479999999988888888999
Q ss_pred EEEEeecC
Q 020242 87 LAINVSAR 94 (329)
Q Consensus 87 l~I~V~~~ 94 (329)
..|.|...
T Consensus 142 GalII~~~ 149 (596)
T PLN00044 142 GAITINNR 149 (596)
T ss_pred eEEEEcCc
Confidence 99988754
No 59
>PLN02191 L-ascorbate oxidase
Probab=51.74 E-value=20 Score=37.93 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=48.3
Q ss_pred CCeeeecCEEEEeeCCCC---------ceEEEEccccccCC-C-CCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPARV---------HDVVEVTKAAYDSC-N-SSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAG 257 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~~---------h~V~~V~~~~y~~C-~-~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~G 257 (329)
-++++.||.|+.+..+.. |.+.+-...-+|.= . ..-+|....+-...|+++..|++||=|....+-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 478999999998776431 22222111111210 0 001222222222467889999999999998888999
Q ss_pred CeEEEEecC
Q 020242 258 QKLAVNVTG 266 (329)
Q Consensus 258 mKl~I~V~~ 266 (329)
|-..|.|..
T Consensus 135 l~G~liV~~ 143 (574)
T PLN02191 135 LYGSLIVDV 143 (574)
T ss_pred CEEEEEEcc
Confidence 999999964
No 60
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.86 E-value=19 Score=32.79 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=26.3
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecCCC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTGGS 268 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~~ 268 (329)
.++.+++|.++..|.. .|..| |++.|.|.+..
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4567899999999987 77765 99999998754
No 61
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=49.43 E-value=42 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred cEEEecccCceEEEcCCCCCCCCCCeEEEEeecC
Q 020242 61 ASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR 94 (329)
Q Consensus 61 ~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V~~~ 94 (329)
.+++| ++|.|-|+|+. | ..|+..|.|...
T Consensus 90 l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 90 MTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 35566 69999999976 4 336777888643
No 62
>PLN02354 copper ion binding / oxidoreductase
Probab=49.41 E-value=53 Score=34.66 Aligned_cols=78 Identities=17% Similarity=0.081 Sum_probs=48.0
Q ss_pred CceeeCCEEEEEEcCC--------CCcEEEeCcccccC-CCCCCCCcccCCCCcEEEe-cccCceEEEcCCCCCCCCCCe
Q 020242 17 FSFFFFTFSVFNFAAG--------NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~--------~H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFiCs~~~HC~~GmK 86 (329)
++++.||+|+.+..+. -|-+.|-.....|. ....-+|..-.+-...|++ +..|++||-+-...+-..||.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~ 139 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGF 139 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCcc
Confidence 4789999999988753 14444321111221 0000122222222246777 468999999988888889999
Q ss_pred EEEEeecC
Q 020242 87 LAINVSAR 94 (329)
Q Consensus 87 l~I~V~~~ 94 (329)
..|.|...
T Consensus 140 G~lII~~~ 147 (552)
T PLN02354 140 GGLRVNSR 147 (552)
T ss_pred ceEEEcCC
Confidence 99888754
No 63
>PLN02835 oxidoreductase
Probab=49.12 E-value=50 Score=34.70 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=47.7
Q ss_pred CceeeCCEEEEEEcCC--------CCcEEEeCcccccC-CCCCCCCcccCCCCcEEEe-cccCceEEEcCCCCCCCCCCe
Q 020242 17 FSFFFFTFSVFNFAAG--------NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~--------~H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFiCs~~~HC~~GmK 86 (329)
++++.||+|+.+..++ -|-+.+-.....|. ....-+|....+-...|++ +..|++||=+-...|-..||.
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~ 141 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGF 141 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCccc
Confidence 4889999999998754 14444332211221 1111123222333346776 479999999988888888999
Q ss_pred EEEEeec
Q 020242 87 LAINVSA 93 (329)
Q Consensus 87 l~I~V~~ 93 (329)
..|.|..
T Consensus 142 G~lIV~~ 148 (539)
T PLN02835 142 GAINVYE 148 (539)
T ss_pred ceeEEeC
Confidence 8888854
No 64
>PLN02835 oxidoreductase
Probab=48.28 E-value=39 Score=35.50 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCeeeecCEEEEeeCCCC--------ceEEEEccccccC-CCCCCCcccCCCCCcEEEe-CCCCcEEEEcCCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYDS-CNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQ 258 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~~--------h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~L-~~~G~~YFic~~~~HC~~Gm 258 (329)
.++++.||+|+.+..++. |-+.+......|. ....-+|....+=...|++ +..|++||=|....+-..||
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 478999999998876432 4444432222231 0011133332222346776 47999999998888888999
Q ss_pred eEEEEecC
Q 020242 259 KLAVNVTG 266 (329)
Q Consensus 259 Kl~I~V~~ 266 (329)
...|.|..
T Consensus 141 ~G~lIV~~ 148 (539)
T PLN02835 141 FGAINVYE 148 (539)
T ss_pred cceeEEeC
Confidence 99999964
No 65
>PLN02354 copper ion binding / oxidoreductase
Probab=48.15 E-value=45 Score=35.16 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=50.7
Q ss_pred CCeeeecCEEEEeeCCC--------CceEEEEccccccC-CCCCCCcccCCCCCcEEEe-CCCCcEEEEcCCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPAR--------VHDVVEVTKAAYDS-CNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQ 258 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~--------~h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~L-~~~G~~YFic~~~~HC~~Gm 258 (329)
.++++.||+|+.+..++ -|-+.+......|. ..+.-+|....+=...|++ +..|++||=+....+-..||
T Consensus 59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl 138 (552)
T PLN02354 59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGG 138 (552)
T ss_pred cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCc
Confidence 47889999999877543 25555432222221 0011133332222346777 47899999998888888999
Q ss_pred eEEEEecCCC
Q 020242 259 KLAVNVTGGS 268 (329)
Q Consensus 259 Kl~I~V~~~~ 268 (329)
...|.|....
T Consensus 139 ~G~lII~~~~ 148 (552)
T PLN02354 139 FGGLRVNSRL 148 (552)
T ss_pred cceEEEcCCc
Confidence 9999997643
No 66
>PLN02168 copper ion binding / pectinesterase
Probab=47.24 E-value=47 Score=35.00 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=51.1
Q ss_pred CCeeeecCEEEEeeCCCC--------ceEEEEccccccC-CCCCCCcccCCCCCcEEEeC-CCCcEEEEcCCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYDS-CNSSSTISKSTNPPTRITLG-TAGEHYFFCTFPGHCSAGQ 258 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~~--------h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~L~-~~G~~YFic~~~~HC~~Gm 258 (329)
.++++.||+|+.+..++. |.+.+......|. ....-+|....+=...|++. ..|++||=|....+=..||
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 478999999999886532 4544432221221 01111343322223578884 7999999998777777899
Q ss_pred eEEEEecCCC
Q 020242 259 KLAVNVTGGS 268 (329)
Q Consensus 259 Kl~I~V~~~~ 268 (329)
...|.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999997644
No 67
>PLN02168 copper ion binding / pectinesterase
Probab=45.74 E-value=61 Score=34.15 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=48.9
Q ss_pred CceeeCCEEEEEEcCCC--------CcEEEeCcccccC-CCCCCCCcccCCCCcEEEec-ccCceEEEcCCCCCCCCCCe
Q 020242 17 FSFFFFTFSVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~~--------H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~L~-~~G~~yFiCs~~~HC~~GmK 86 (329)
++++.||+|+.+..++- |-+.+-.....|. ....-+|....+-...|++. ..|++||-+-...+=..||.
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~ 138 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGY 138 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcce
Confidence 58899999999997542 4444432211222 11111333223333578884 79999999877777778999
Q ss_pred EEEEeecC
Q 020242 87 LAINVSAR 94 (329)
Q Consensus 87 l~I~V~~~ 94 (329)
..|.|...
T Consensus 139 G~lII~~~ 146 (545)
T PLN02168 139 GAIRIYNP 146 (545)
T ss_pred eEEEEcCC
Confidence 99988754
No 68
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=45.35 E-value=2.1e+02 Score=27.71 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=21.7
Q ss_pred CeeeecCEEEEeeCC-----------CCceEEE---EccccccCCCCCCCc
Q 020242 190 NNFSVGDILVFDYPA-----------RVHDVVE---VTKAAYDSCNSSSTI 226 (329)
Q Consensus 190 ~~f~vGD~LvF~y~~-----------~~h~V~~---V~~~~y~~C~~~~~i 226 (329)
.++.-|-.|.-|... .+++++. +++.-|..-...|.+
T Consensus 133 ~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~dn~k 183 (297)
T PF07174_consen 133 SHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEPDNTK 183 (297)
T ss_pred ceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccCChHH
Confidence 455557788776541 1344444 377778777766643
No 69
>PLN02792 oxidoreductase
Probab=45.07 E-value=46 Score=35.01 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=49.1
Q ss_pred CCeeeecCEEEEeeCCCC--------ceEEEEccccccC-CCCCCCcccCCCCCcEEEe-CCCCcEEEEcCCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYDS-CNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQ 258 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~~--------h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~L-~~~G~~YFic~~~~HC~~Gm 258 (329)
.++++.||+|+.+..++. |.+.+......|. ....-+|....+=...|++ +..|++||=|....+-..|+
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhccc
Confidence 478999999999886542 4555432111221 0011133332222346787 47999999998887777888
Q ss_pred eEEEEecCC
Q 020242 259 KLAVNVTGG 267 (329)
Q Consensus 259 Kl~I~V~~~ 267 (329)
-..|.|...
T Consensus 128 ~G~liI~~~ 136 (536)
T PLN02792 128 YGSLRIYSL 136 (536)
T ss_pred ccceEEeCC
Confidence 888877653
No 70
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.80 E-value=25 Score=32.04 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=25.7
Q ss_pred EEEecccCceEEEcCCCCCCCCC---CeEEEEeecCC
Q 020242 62 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSARG 95 (329)
Q Consensus 62 ~v~L~~~G~~yFiCs~~~HC~~G---mKl~I~V~~~~ 95 (329)
.++.+++|.++..|+. -|..| |++.|.|...+
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 3567889999999986 67665 99999998653
No 71
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=44.46 E-value=46 Score=34.79 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=46.5
Q ss_pred CCeeeecCEEEEeeCCCC--------ceEEEEccccccC--CCCCCCcccCCCCCcEEEe-CCCCcEEEEcCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYDS--CNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAG 257 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~~--------h~V~~V~~~~y~~--C~~~~~i~~~~~G~~~v~L-~~~G~~YFic~~~~HC~~G 257 (329)
.++++.||+|+.+..+.. |.+.+......|. ..+.-+|....+-...|++ +..|++||=|.... ...|
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~~G 113 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW-LRAT 113 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh-hhcc
Confidence 478999999999876432 3333221111221 1111123222222246777 48999999998754 4569
Q ss_pred CeEEEEecCCC
Q 020242 258 QKLAVNVTGGS 268 (329)
Q Consensus 258 mKl~I~V~~~~ 268 (329)
|-..|.|....
T Consensus 114 l~G~lIV~~~~ 124 (539)
T TIGR03389 114 VYGAIVILPKP 124 (539)
T ss_pred ceEEEEEcCCC
Confidence 99999998643
No 72
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=44.05 E-value=23 Score=29.50 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.8
Q ss_pred CCeeeecCEEEEee
Q 020242 189 NNNFSVGDILVFDY 202 (329)
Q Consensus 189 ~~~f~vGD~LvF~y 202 (329)
.+.|++||.|+|+=
T Consensus 29 r~~ikvGD~I~f~~ 42 (109)
T cd06555 29 RQQIKVGDKILFND 42 (109)
T ss_pred hhcCCCCCEEEEEE
Confidence 36899999999954
No 73
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=43.80 E-value=25 Score=36.28 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=12.8
Q ss_pred cccCCCeeeecCEEEEeeCCCCceE
Q 020242 185 NWARNNNFSVGDILVFDYPARVHDV 209 (329)
Q Consensus 185 ~Wa~~~~f~vGD~LvF~y~~~~h~V 209 (329)
.|..+.+.+.==.++|--..|..+|
T Consensus 79 ~w~snn~~~A~p~f~~Pvp~G~~sV 103 (465)
T PF01690_consen 79 GWYSNNSVKAIPMFVFPVPKGKWSV 103 (465)
T ss_pred eeEecCcceeeeEEEEecCCceEEE
Confidence 4555555555555555444444333
No 74
>PLN02792 oxidoreductase
Probab=43.38 E-value=68 Score=33.73 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=46.3
Q ss_pred CceeeCCEEEEEEcCC--------CCcEEEeCcccccC-CCCCCCCcccCCCCcEEEe-cccCceEEEcCCCCCCCCCCe
Q 020242 17 FSFFFFTFSVFNFAAG--------NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~--------~H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFiCs~~~HC~~GmK 86 (329)
++++.||+|+.+..+. -|-+.|-.....|. -...-+|..-.+-...|++ +..|++||-+-...+-..|+.
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 128 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGY 128 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccc
Confidence 4789999999999754 24454432111111 0001123222222346888 479999999988777777887
Q ss_pred EEEEeec
Q 020242 87 LAINVSA 93 (329)
Q Consensus 87 l~I~V~~ 93 (329)
..+.|..
T Consensus 129 G~liI~~ 135 (536)
T PLN02792 129 GSLRIYS 135 (536)
T ss_pred cceEEeC
Confidence 7776654
No 75
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=42.91 E-value=83 Score=24.17 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.7
Q ss_pred eeeecCEEEEeeCCCCc
Q 020242 191 NFSVGDILVFDYPARVH 207 (329)
Q Consensus 191 ~f~vGD~LvF~y~~~~h 207 (329)
.|++||.|.|.+..+.+
T Consensus 2 ~~~~Ge~v~~~~~~~~~ 18 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRD 18 (83)
T ss_pred cccCCCEEEEEEEeCCC
Confidence 58899999999976543
No 76
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=41.63 E-value=22 Score=29.61 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=18.1
Q ss_pred CceeeCCEEEEEEcC-CCCcEEEe-CcccccC
Q 020242 17 FSFFFFTFSVFNFAA-GNHDVTRV-TQSSFNA 46 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~-~~H~V~~V-~~~~y~~ 46 (329)
+.|++||.|+|+=.. ++--+++| .-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 479999999996543 23334444 3345553
No 77
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=40.55 E-value=18 Score=28.02 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=11.8
Q ss_pred CCCceeeCCEEEEE
Q 020242 15 CLFSFFFFTFSVFN 28 (329)
Q Consensus 15 ~~~tf~vGD~LvF~ 28 (329)
.++.|+|||.|+++
T Consensus 25 NDRdf~VGD~L~L~ 38 (72)
T PF12961_consen 25 NDRDFQVGDILVLR 38 (72)
T ss_pred cCCCCCCCCEEEEE
Confidence 45799999999885
No 78
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=40.55 E-value=17 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=16.9
Q ss_pred cCCChhhccCCCceeeCCEEEEEEcCC
Q 020242 6 LISDIDVFLCLFSFFFFTFSVFNFAAG 32 (329)
Q Consensus 6 ~~~~y~~Wa~~~tf~vGD~LvF~y~~~ 32 (329)
+..+-...+.++.+++||.++|.+..+
T Consensus 61 l~~GW~~Fv~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 61 LTGGWKKFVRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp EETTHHHHHHHCT--TT-EEEEEE-SS
T ss_pred ECCCHHHHHHHcCCCCCCEEEEEEecC
Confidence 334455667788999999999999753
No 79
>PLN02604 oxidoreductase
Probab=39.65 E-value=51 Score=34.76 Aligned_cols=77 Identities=6% Similarity=-0.101 Sum_probs=48.1
Q ss_pred CCceeeCCEEEEEEcCCC----CcEEEeCcccc-cCCCCCCCC-----cccCCCC---cEEEecccCceEEEcCCCCCCC
Q 020242 16 LFSFFFFTFSVFNFAAGN----HDVTRVTQSSF-NACNTTSPL-----SRTTNSP---ASVTLTASGPHYFICSFPGHCL 82 (329)
Q Consensus 16 ~~tf~vGD~LvF~y~~~~----H~V~~V~~~~y-~~C~~~~~~-----~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~ 82 (329)
-++++.||+|++++.+.. |++.- ..-+ ......++. .....|. ..|+++..|++||-|-...|-.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~--HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~ 133 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHW--HGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQRE 133 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEe--CCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHh
Confidence 468899999999997541 22221 0000 001100111 0122233 3678889999999999999999
Q ss_pred CCCeEEEEeecC
Q 020242 83 GGQKLAINVSAR 94 (329)
Q Consensus 83 ~GmKl~I~V~~~ 94 (329)
.||...|.|...
T Consensus 134 ~Gl~G~liV~~~ 145 (566)
T PLN02604 134 AGLYGSIRVSLP 145 (566)
T ss_pred CCCeEEEEEEec
Confidence 999999999743
No 80
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=39.37 E-value=11 Score=29.41 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=24.1
Q ss_pred CceeeCCEEEEEEcC-----CCCcEEEe-CcccccCCCCCCCCcccCCCCcEEEecccCceEEE
Q 020242 17 FSFFFFTFSVFNFAA-----GNHDVTRV-TQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFI 74 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~-----~~H~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFi 74 (329)
--+.+||.|.|.-.. |+.+|..| ++..|.- ..+....++++..|.+|-+
T Consensus 26 HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntFTV---------t~~~~q~~t~NnaG~~w~~ 80 (83)
T PF12195_consen 26 HGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTFTV---------TTSNSQTSTFNNAGVNWNF 80 (83)
T ss_dssp ----TT-EEEEES-SSTT--EEEEEEEEEETTEEEE---------E-S---SS-EE-TT-EEEE
T ss_pred CceeecceEEEeccccccccccEEEEEEecCCcEEE---------ecCCcccccccccceeeec
Confidence 356899999998753 35667766 6655552 2222345778888888854
No 81
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=39.23 E-value=59 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 020242 232 PPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG 267 (329)
Q Consensus 232 G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~ 267 (329)
+...++| ++|.|-|+|+. | ..||..|+|...
T Consensus 88 ~~l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 88 QKMTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred eEEEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 3445666 79999999976 5 346777888753
No 82
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=37.83 E-value=45 Score=29.13 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=26.8
Q ss_pred CceeeCCEEEEEEc-----CCCCcEEEeCcccccCCCC
Q 020242 17 FSFFFFTFSVFNFA-----AGNHDVTRVTQSSFNACNT 49 (329)
Q Consensus 17 ~tf~vGD~LvF~y~-----~~~H~V~~V~~~~y~~C~~ 49 (329)
...+.||++++.-. ...|+.+.++...+-.|+.
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y 111 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNY 111 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecC
Confidence 47899999998664 2469998888888888986
No 83
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=36.51 E-value=91 Score=32.61 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=43.7
Q ss_pred CceeeCCEEEEEEcCCC--------CcEEEeCcccccC--CCCCCCCcccCCCCcEEEe-cccCceEEEcCCCCCCCCCC
Q 020242 17 FSFFFFTFSVFNFAAGN--------HDVTRVTQSSFNA--CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ 85 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~~--------H~V~~V~~~~y~~--C~~~~~~~~~~~G~~~v~L-~~~G~~yFiCs~~~HC~~Gm 85 (329)
++++.||+|+.+..+.. |-+.|......|. ....-+|....+-...|++ +..|++||=|-... ...||
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~~Gl 114 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW-LRATV 114 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh-hhccc
Confidence 47899999999887531 2232221111111 0000112111222246777 48899999998754 45699
Q ss_pred eEEEEeecC
Q 020242 86 KLAINVSAR 94 (329)
Q Consensus 86 Kl~I~V~~~ 94 (329)
...|.|...
T Consensus 115 ~G~lIV~~~ 123 (539)
T TIGR03389 115 YGAIVILPK 123 (539)
T ss_pred eEEEEEcCC
Confidence 999988754
No 84
>PLN02191 L-ascorbate oxidase
Probab=36.43 E-value=51 Score=34.93 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=46.8
Q ss_pred CceeeCCEEEEEEcCCC---------CcEEEeCcccccC-CC-CCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCC
Q 020242 17 FSFFFFTFSVFNFAAGN---------HDVTRVTQSSFNA-CN-TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~~---------H~V~~V~~~~y~~-C~-~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~Gm 85 (329)
++++.||+|+.+..+.. |-+.+-...-+|. -. ..-+|....+-...|+++..|++||-|-...+-..||
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl 135 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGL 135 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCC
Confidence 47899999999887531 2222111101111 00 0011211122224688899999999999988889999
Q ss_pred eEEEEeec
Q 020242 86 KLAINVSA 93 (329)
Q Consensus 86 Kl~I~V~~ 93 (329)
...|.|..
T Consensus 136 ~G~liV~~ 143 (574)
T PLN02191 136 YGSLIVDV 143 (574)
T ss_pred EEEEEEcc
Confidence 99999963
No 85
>PLN02991 oxidoreductase
Probab=31.48 E-value=1.3e+02 Score=31.86 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=50.0
Q ss_pred CCeeeecCEEEEeeCCCC--------ceEEEEccccccCCC-CCCCcccCCCCCcEEEe-CCCCcEEEEcCCCCCCCCCC
Q 020242 189 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYDSCN-SSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQ 258 (329)
Q Consensus 189 ~~~f~vGD~LvF~y~~~~--------h~V~~V~~~~y~~C~-~~~~i~~~~~G~~~v~L-~~~G~~YFic~~~~HC~~Gm 258 (329)
.++++.||.|+.+..+.. |-+.+......|.-. ..-+|....+=...|++ +..|++||=+-...+-..|+
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 478999999999886542 444443211222100 11133332222346777 47999999998877767799
Q ss_pred eEEEEecCCC
Q 020242 259 KLAVNVTGGS 268 (329)
Q Consensus 259 Kl~I~V~~~~ 268 (329)
...|.|....
T Consensus 140 ~G~lIV~~~~ 149 (543)
T PLN02991 140 FGAIRISSRP 149 (543)
T ss_pred eeeEEEeCCc
Confidence 8889887643
No 86
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=31.43 E-value=1.2e+02 Score=26.39 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=27.8
Q ss_pred CeeeecCEEEEeeC-----CCCceEEEEccccccCCCCC
Q 020242 190 NNFSVGDILVFDYP-----ARVHDVVEVTKAAYDSCNSS 223 (329)
Q Consensus 190 ~~f~vGD~LvF~y~-----~~~h~V~~V~~~~y~~C~~~ 223 (329)
...+-||++++.-. ...|..+.++...+-.|+-.
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~ 112 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYG 112 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCC
Confidence 46899999998665 24599999998899999963
No 87
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=29.41 E-value=69 Score=28.58 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=23.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCCC---CCeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSA---GQKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~---GmKl~I~V~~ 266 (329)
.+..+++|.+|..|.. -|.. .|.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3566899999999987 5654 4888888764
No 88
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=28.18 E-value=40 Score=28.70 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=15.5
Q ss_pred CceeeCCEEEEEEcCCCC
Q 020242 17 FSFFFFTFSVFNFAAGNH 34 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~~H 34 (329)
+.|++||.++|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 489999999999997655
No 89
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.14 E-value=72 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=24.9
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
.++.+++|.+|..|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEEC
Confidence 4567899999999987 77765 999988875
No 90
>PLN02991 oxidoreductase
Probab=27.49 E-value=1.9e+02 Score=30.60 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=46.5
Q ss_pred CceeeCCEEEEEEcCCC--------CcEEEeCcccccCC-CCCCCCcccCCCCcEEEe-cccCceEEEcCCCCCCCCCCe
Q 020242 17 FSFFFFTFSVFNFAAGN--------HDVTRVTQSSFNAC-NTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQK 86 (329)
Q Consensus 17 ~tf~vGD~LvF~y~~~~--------H~V~~V~~~~y~~C-~~~~~~~~~~~G~~~v~L-~~~G~~yFiCs~~~HC~~GmK 86 (329)
++++.||+|+.+..+.- |-+.|......|.= ...-+|....+-...|++ +..|++||-+-...+-..|+.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Confidence 57899999999987542 44443211112210 001123222223356888 479999998877766667888
Q ss_pred EEEEeecC
Q 020242 87 LAINVSAR 94 (329)
Q Consensus 87 l~I~V~~~ 94 (329)
..|.|...
T Consensus 141 G~lIV~~~ 148 (543)
T PLN02991 141 GAIRISSR 148 (543)
T ss_pred eeEEEeCC
Confidence 88888644
No 91
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=25.42 E-value=48 Score=21.99 Aligned_cols=18 Identities=17% Similarity=0.674 Sum_probs=14.4
Q ss_pred cccccCCCeeeecCEEEE
Q 020242 183 YQNWARNNNFSVGDILVF 200 (329)
Q Consensus 183 Y~~Wa~~~~f~vGD~LvF 200 (329)
|..|..++....||.|.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888888888998876
No 92
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.97 E-value=97 Score=28.73 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.5
Q ss_pred EEEecccCceEEEcCCCCCCCCC---CeEEEEeec
Q 020242 62 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 93 (329)
Q Consensus 62 ~v~L~~~G~~yFiCs~~~HC~~G---mKl~I~V~~ 93 (329)
.++.+++|.+|.+|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEEC
Confidence 4677899999999986 67666 999988864
No 93
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.88 E-value=1e+02 Score=28.69 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=24.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
.++.+++|.+|..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 4677899999999987 66655 898888765
No 94
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.62 E-value=1e+02 Score=28.57 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=24.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
.++.+++|.+|..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4567899999999987 67665 888888765
No 95
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.42 E-value=1.1e+02 Score=28.40 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.3
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
.++.+++|.+|..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 4567899999999987 67654 998888765
No 96
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=22.36 E-value=1e+02 Score=27.45 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=22.8
Q ss_pred EEEecccCceEEEcCCCCCCCCC---CeEEEEeec
Q 020242 62 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 93 (329)
Q Consensus 62 ~v~L~~~G~~yFiCs~~~HC~~G---mKl~I~V~~ 93 (329)
.+..+++|.+|..|+. -|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3567889999999986 55543 898888764
No 97
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.17 E-value=1e+02 Score=28.58 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.5
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
.++.+++|.+|..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 4667899999999987 67765 898888765
No 98
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.97 E-value=1e+02 Score=28.80 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=23.8
Q ss_pred EEEeCCCCcEEEEcCCCCCCCC---CCeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSA---GQKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~---GmKl~I~V~~ 266 (329)
.+..+++|.+|..|+. -|.. .|++.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4567899999999987 6665 4898888765
No 99
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.78 E-value=52 Score=30.72 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.0
Q ss_pred cEEEecccCceEEEcCCCCCCCCCC
Q 020242 61 ASVTLTASGPHYFICSFPGHCLGGQ 85 (329)
Q Consensus 61 ~~v~L~~~G~~yFiCs~~~HC~~Gm 85 (329)
+.|.+++.|-+.|+|+.-+||.+-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 5789999999999999999998643
No 100
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.23 E-value=1.1e+02 Score=28.44 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=23.8
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
.++.+++|.+|..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 4567899999999987 66654 888888765
No 101
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.82 E-value=1.2e+02 Score=28.22 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=24.3
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 235 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 235 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
.++.+++|.+|..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4567899999999987 67665 999888765
No 102
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=20.31 E-value=1.1e+02 Score=28.42 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=49.4
Q ss_pred eEEEEeccCCcccCCCCCcCcccc----cCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCC---cE
Q 020242 163 ATHVVGGALGWTVPPNASVGYQNW----ARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPP---TR 235 (329)
Q Consensus 163 ~~~~VGg~~GW~~~~~~~~~Y~~W----a~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~ 235 (329)
+..++|-.=.|.+. |.+- .+...+-+|--+.|.-.+. ||. .+|---.... ....-.|. ..
T Consensus 116 ~I~V~g~QW~W~f~------Yp~~~~~~~nel~lP~g~pV~~~ltS~--DVi----HSF~VP~l~~-K~DaiPG~~n~~~ 182 (226)
T TIGR01433 116 TIEVVALDWKWLFI------YPEQGIATVNEIAFPVNTPINFKITSN--SVM----NSFFIPQLGS-QIYAMAGMQTKLH 182 (226)
T ss_pred EEEEEEEeceEEEE------cCCCCccccceEEEECCCEEEEEEEEC--chh----hhhhhhhcCC-eeecCCCceEEEE
Confidence 34456777778863 3221 1344566777777766542 333 1111001110 01111232 34
Q ss_pred EEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 020242 236 ITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 266 (329)
Q Consensus 236 v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 266 (329)
++.+++|.|+-.|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 183 LIANEPGVYDGISAN--YSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEeCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 678899999999987 66654 999988865
Done!