Your job contains 1 sequence.
>020243
MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR
AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK
EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACV
DVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA
NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ
LPDFNSVLDGNIKPFIEAHINSRRSSDTD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020243
(329 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2082563 - symbol:PrfB3 "peptide chain release ... 872 2.9e-87 1
TAIR|locus:2158936 - symbol:HCF109 "high chlorophyll fluo... 606 4.5e-59 1
TIGR_CMR|CHY_0163 - symbol:CHY_0163 "peptide chain releas... 429 2.6e-40 1
UNIPROTKB|Q3Z8Y6 - symbol:prfB "Peptide chain release fac... 402 1.9e-37 1
TIGR_CMR|DET_0570 - symbol:DET_0570 "peptide chain releas... 402 1.9e-37 1
UNIPROTKB|P66026 - symbol:prfB "Peptide chain release fac... 400 3.0e-37 1
TIGR_CMR|GSU_2278 - symbol:GSU_2278 "peptide chain releas... 395 1.0e-36 1
TAIR|locus:2010748 - symbol:AT1G56350 species:3702 "Arabi... 383 1.9e-35 1
UNIPROTKB|P07012 - symbol:prfB species:83333 "Escherichia... 362 3.2e-33 1
TIGR_CMR|ECH_0705 - symbol:ECH_0705 "peptide chain releas... 339 8.8e-31 1
TIGR_CMR|SPO_2585 - symbol:SPO_2585 "peptide chain releas... 336 1.8e-30 1
TIGR_CMR|NSE_0604 - symbol:NSE_0604 "peptide chain releas... 322 5.6e-29 1
TIGR_CMR|CJE_1628 - symbol:CJE_1628 "peptide chain releas... 306 2.8e-27 1
TIGR_CMR|APH_0479 - symbol:APH_0479 "peptide chain releas... 302 7.3e-27 1
DICTYBASE|DDB_G0288835 - symbol:prfB "class I peptide cha... 271 2.4e-23 1
UNIPROTKB|Q9KQ25 - symbol:prfA "Peptide chain release fac... 253 1.1e-21 1
TIGR_CMR|VC_2179 - symbol:VC_2179 "peptide chain release ... 253 1.1e-21 1
TIGR_CMR|CPS_3552 - symbol:CPS_3552 "peptide chain releas... 248 3.9e-21 1
TIGR_CMR|CHY_2563 - symbol:CHY_2563 "peptide chain releas... 237 4.3e-19 1
TIGR_CMR|BA_5572 - symbol:BA_5572 "peptide chain release ... 233 2.3e-18 1
TIGR_CMR|CBU_1965 - symbol:CBU_1965 "peptide chain releas... 231 5.2e-18 1
TIGR_CMR|GSU_3104 - symbol:GSU_3104 "peptide chain releas... 221 1.3e-16 1
UNIPROTKB|P66016 - symbol:prfA "Peptide chain release fac... 220 1.9e-16 1
TIGR_CMR|SO_3833 - symbol:SO_3833 "peptide chain release ... 216 7.2e-16 1
TIGR_CMR|ECH_0597 - symbol:ECH_0597 "peptide chain releas... 215 9.0e-16 1
TIGR_CMR|NSE_0406 - symbol:NSE_0406 "peptide chain releas... 213 1.9e-15 1
TIGR_CMR|DET_1210 - symbol:DET_1210 "peptide chain releas... 210 3.8e-15 1
UNIPROTKB|P0A7I0 - symbol:prfA "peptide chain release fac... 209 5.4e-15 1
TAIR|locus:2041409 - symbol:AT2G47020 species:3702 "Arabi... 209 9.1e-15 1
TIGR_CMR|APH_0420 - symbol:APH_0420 "peptide chain releas... 202 4.1e-14 1
DICTYBASE|DDB_G0283175 - symbol:prfA "peptide chain relea... 192 1.1e-12 1
TIGR_CMR|SPO_2461 - symbol:SPO_2461 "peptide chain releas... 180 1.7e-11 1
TIGR_CMR|CJE_1784 - symbol:CJE_1784 "peptide chain releas... 179 2.3e-11 1
TAIR|locus:2099137 - symbol:APG3 "AT3G62910" species:3702... 177 6.3e-11 1
GENEDB_PFALCIPARUM|MAL7P1.20 - symbol:MAL7P1.20 "peptide ... 131 9.3e-11 2
UNIPROTKB|Q8IC21 - symbol:MAL7P1.20 "Peptide chain releas... 131 9.3e-11 2
POMBASE|SPAC2F7.17 - symbol:SPAC2F7.17 "mitochondrial pep... 171 2.7e-10 1
FB|FBgn0032486 - symbol:CG5705 species:7227 "Drosophila m... 158 8.1e-09 1
SGD|S000003111 - symbol:MRF1 "Mitochondrial translation r... 146 2.1e-07 1
UNIPROTKB|F1NW58 - symbol:MTRF1L "Uncharacterized protein... 143 3.6e-07 1
UNIPROTKB|E1BXF8 - symbol:MTRF1 "Uncharacterized protein"... 139 1.3e-06 1
CGD|CAL0003702 - symbol:orf19.1303 species:5476 "Candida ... 137 2.0e-06 1
UNIPROTKB|F1MCM1 - symbol:MTRF1L "Peptide chain release f... 136 2.4e-06 1
UNIPROTKB|Q2KI15 - symbol:MTRF1L "Peptide chain release f... 136 2.4e-06 1
UNIPROTKB|Q9UGC7 - symbol:MTRF1L "Peptide chain release f... 136 2.4e-06 1
ZFIN|ZDB-GENE-030131-8198 - symbol:mtrf1l "mitochondrial ... 135 2.5e-06 1
RGD|1598312 - symbol:Mtrf1l "mitochondrial translational ... 134 3.9e-06 1
UNIPROTKB|F1S7X5 - symbol:MTRF1L "Uncharacterized protein... 132 6.9e-06 1
WB|WBGene00020993 - symbol:W03F8.3 species:6239 "Caenorha... 130 1.2e-05 1
MGI|MGI:1918830 - symbol:Mtrf1l "mitochondrial translatio... 129 1.4e-05 1
UNIPROTKB|E2QTM1 - symbol:MTRF1L "Uncharacterized protein... 128 1.9e-05 1
ASPGD|ASPL0000035902 - symbol:AN3462 species:162425 "Emer... 87 2.2e-05 2
UNIPROTKB|F6V8L3 - symbol:MTRF1L "Uncharacterized protein... 122 3.1e-05 1
UNIPROTKB|Q3MHI7 - symbol:MTRF1 "Peptide chain release fa... 122 0.00012 1
UNIPROTKB|E2RAT2 - symbol:MTRF1 "Uncharacterized protein"... 120 0.00020 1
MGI|MGI:2384815 - symbol:Mtrf1 "mitochondrial translation... 118 0.00033 1
ZFIN|ZDB-GENE-050220-8 - symbol:zgc:113104 "zgc:113104" s... 110 0.00074 1
>TAIR|locus:2082563 [details] [associations]
symbol:PrfB3 "peptide chain release factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003747 "translation
release factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006415 "translational termination"
evidence=IEA;ISS] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009772 "photosynthetic electron transport in
photosystem II" evidence=IMP] [GO:0010190 "cytochrome b6f complex
assembly" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=IMP] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0009570 EMBL:CP002686
GO:GO:0043565 Gene3D:3.30.160.20 GO:GO:0009658 GO:GO:0048255
GO:GO:0003730 GO:GO:0009772 GO:GO:0016149 GO:GO:0010190
IPI:IPI00516531 RefSeq:NP_191278.2 UniGene:At.34857
ProteinModelPortal:F4J264 SMR:F4J264 EnsemblPlants:AT3G57190.1
GeneID:824886 KEGG:ath:AT3G57190 OMA:DIIPLFL Uniprot:F4J264
Length = 406
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 180/328 (54%), Positives = 233/328 (71%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA++
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERL 202
Query: 122 GYRGRVVDKCCC--KNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLAC 179
G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E A
Sbjct: 203 GQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLII---SSTSNEECSAT 259
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ +QS GERN F
Sbjct: 260 VDIIPLFLRASPDFEVKEGDLIVSYPAK--EDHKIAENMVCIHHIPSGVTLQSSGERNRF 317
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
AN++KALNRLKAKLLVI EQ VS+V+ I + I+ + ETR YVS +K+V D KTG+
Sbjct: 318 ANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNILEP-REETRSYVSKGHKMVVDRKTGL 376
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ D SVLDGNI P + AHI+ RRS D
Sbjct: 377 EILDLKSVLDGNIGPLLGAHISMRRSID 404
>TAIR|locus:2158936 [details] [associations]
symbol:HCF109 "high chlorophyll fluorescent 109"
species:3702 "Arabidopsis thaliana" [GO:0003747 "translation
release factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006415 "translational termination"
evidence=IEA;ISS;IMP] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006396 "RNA processing" evidence=IMP] [GO:0009657 "plastid
organization" evidence=IMP] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 EMBL:CP002688 GO:GO:0009570
Gene3D:3.30.160.20 GO:GO:0006396 GO:GO:0009657 GO:GO:0006415
GO:GO:0016149 EMBL:AB018112 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 HSSP:P07012
UniGene:At.9505 EMBL:AY056234 EMBL:AY117253 EMBL:AY084711
IPI:IPI00546331 RefSeq:NP_851096.1 ProteinModelPortal:Q9LVY0
SMR:Q9LVY0 STRING:Q9LVY0 PRIDE:Q9LVY0 EnsemblPlants:AT5G36170.1
GeneID:833614 KEGG:ath:AT5G36170 TAIR:At5g36170 InParanoid:Q9LVY0
OMA:MGWGSQI PhylomeDB:Q9LVY0 ProtClustDB:CLSN2680355
ArrayExpress:Q9LVY0 Genevestigator:Q9LVY0 Uniprot:Q9LVY0
Length = 456
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 130/324 (40%), Positives = 199/324 (61%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 122 SFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGI 181
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+ Y+
Sbjct: 182 IKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYK 241
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FP-NGSFPHEATLACVDV 182
+VV+ + G+KSAT+E E YA+GY+SGE G H ++ P N + + + V+V
Sbjct: 242 TKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 301
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHF 239
+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AV+ ER+
Sbjct: 302 MPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQL 361
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANK +AL RLKAKL+VI EQ + + I+ +A+ W ++ R YV HPYKLV+DV+TG
Sbjct: 362 ANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGH 421
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ D SV+DG++ PFI+A++ +
Sbjct: 422 ETSDITSVMDGDLDPFIKAYLKHK 445
>TIGR_CMR|CHY_0163 [details] [associations]
symbol:CHY_0163 "peptide chain release factor 2,
programmed frameshift" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003747 "translation release factor
activity" evidence=ISS] [GO:0006415 "translational termination"
evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:3.30.160.20
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_359035.1 ProteinModelPortal:Q3AFP9 STRING:Q3AFP9
GeneID:3727359 KEGG:chy:CHY_0163 PATRIC:21273511 Uniprot:Q3AFP9
Length = 371
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 104/320 (32%), Positives = 164/320 (51%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ T++ + L +L + ++L EE ++ QL E E + L A +
Sbjct: 43 DFWDNYTEAQKTLKELNRLKDDIEKYEELLKAQEELTVLLQLLEEEENEE-LAVEAQDKA 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L + E+ LL GP D A V++ AG+ G + W E L MY RWA+ +GY+
Sbjct: 102 KKLMEKLHRMEIELLLSGPYDKNSAIVSLHAGAGGTEAQDWVEMLYRMYTRWAEDKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP--HEATLACVDVV 183
++D+ + G+KS T E A+GYL E G H LI F + A VDV+
Sbjct: 162 ELIDRLLGEEAGLKSVTFSVEGFGAYGYLKAERGVHRLIRISPFDFSGRRHTSFASVDVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E P++++ +E+L F S G+ + + A I H+PTGI V ER+
Sbjct: 222 PEVAEDIPEIELKEEELKIETFRSGGAGGQHVNKTESAVRITHLPTGITVVCQNERSQLM 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A LKAKLL + ++ ++ ++ E W + R YV HPY LV+D +TG++
Sbjct: 282 NRALAEKLLKAKLLDLEMKKKEEEMAKLRGEQKEIAWGSQIRTYVFHPYSLVKDHRTGVE 341
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ D V+DG I FIEA++
Sbjct: 342 VGDVQGVMDGEIDIFIEAYL 361
>UNIPROTKB|Q3Z8Y6 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG1186 GO:GO:0003747
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:YP_181313.1
ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6 GeneID:3230122
KEGG:det:DET0570 PATRIC:21608209 ProtClustDB:CLSK837416
Uniprot:Q3Z8Y6
Length = 362
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 99/320 (30%), Positives = 161/320 (50%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + + + KLA + +V + L + + + +L + D L R
Sbjct: 39 DFWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVND---LLELFALTHEDPSLGNEIEREV 95
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 155
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLACVDVV 183
V+D+ + G+KSAT++ E EYA+G+L E G H LI H + A V+V+
Sbjct: 156 EVLDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEVM 215
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E S D+ I ED+ +F S G+ A + HIP+GI V S ER+
Sbjct: 216 PE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQTERSQHQ 274
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L +KLL + + + IK E I W + R YV HPYK+V+D +T +
Sbjct: 275 NREIAMRILASKLLAVEIAKRAEERAKIKGERISAEWGNQIRSYVLHPYKMVKDHRTDYE 334
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + +VL+G + FI A++
Sbjct: 335 VGNAEAVLEGELDGFINAYL 354
>TIGR_CMR|DET_0570 [details] [associations]
symbol:DET_0570 "peptide chain release factor 2,
programmed frameshift" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1186
GO:GO:0003747 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_181313.1 ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6
GeneID:3230122 KEGG:det:DET0570 PATRIC:21608209
ProtClustDB:CLSK837416 Uniprot:Q3Z8Y6
Length = 362
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 99/320 (30%), Positives = 161/320 (50%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + + + KLA + +V + L + + + +L + D L R
Sbjct: 39 DFWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVND---LLELFALTHEDPSLGNEIEREV 95
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 155
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLACVDVV 183
V+D+ + G+KSAT++ E EYA+G+L E G H LI H + A V+V+
Sbjct: 156 EVLDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEVM 215
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E S D+ I ED+ +F S G+ A + HIP+GI V S ER+
Sbjct: 216 PE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQTERSQHQ 274
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L +KLL + + + IK E I W + R YV HPYK+V+D +T +
Sbjct: 275 NREIAMRILASKLLAVEIAKRAEERAKIKGERISAEWGNQIRSYVLHPYKMVKDHRTDYE 334
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + +VL+G + FI A++
Sbjct: 335 VGNAEAVLEGELDGFINAYL 354
>UNIPROTKB|P66026 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.30.160.20 EMBL:BX842582
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 PIR:H70919 RefSeq:NP_217621.1 RefSeq:NP_337713.1
RefSeq:YP_006516568.1 ProteinModelPortal:P66026 SMR:P66026
EnsemblBacteria:EBMYCT00000000199 EnsemblBacteria:EBMYCT00000071451
GeneID:13317912 GeneID:888820 GeneID:926714 KEGG:mtc:MT3188
KEGG:mtu:Rv3105c KEGG:mtv:RVBD_3105c PATRIC:18128778
TubercuList:Rv3105c Uniprot:P66026
Length = 371
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 102/333 (30%), Positives = 178/333 (53%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD T++ V +L+ + + +++LR + ++ ++ +LA EA A
Sbjct: 43 HLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYELAAEEA-GAAAADAVAEAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ L ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 102 AELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHK 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIP+GI V E+
Sbjct: 221 VEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPSGIVVTCQNEK 279
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++
Sbjct: 280 SQLQNKIAAMRVLQAKLLERKRLEERAELDALKADG-GSSWGNQMRSYVLHPYQMVKDLR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHIN--SRRSSD 327
T ++ + +VLDG++ F+EA I +RR+ D
Sbjct: 339 TEYEVGNPAAVLDGDLDGFLEAGIRWRNRRNDD 371
>TIGR_CMR|GSU_2278 [details] [associations]
symbol:GSU_2278 "peptide chain release factor 2,
programmed frameshift" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:NP_953327.1
ProteinModelPortal:Q74AS3 SMR:Q74AS3 GeneID:2686956
KEGG:gsu:GSU2278 PATRIC:22027411 ProtClustDB:CLSK828793
Uniprot:Q74AS3
Length = 372
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 101/330 (30%), Positives = 172/330 (52%)
Query: 8 WDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLD 67
WD+ ++ +VL + K+++ L +A++ +++ +L E EA D +
Sbjct: 45 WDNNEEAQKVLRERTRIEKLIDLWDRLNRQADDIRVLIELGE-EAQDEATLDEVRALNDS 103
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
+ + ++ E ++L GP+D V+I AG+ G + WAE LL MY+R+ +++G++ +
Sbjct: 104 LEREVEGAEFQRMLSGPHDKNSCFVSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKTEI 163
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVP 184
D GVKSAT + EYA+GYL E G H L+ F + + H + A V V P
Sbjct: 164 TDFQAGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFVFP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E +++I++ DL + S G+ + A + H+PTGI V ER+ N
Sbjct: 223 E-IEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLTHLPTGIVVACQCERSQHLN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K AL L+AKL ++ S + E W + R YV HPYK+V+D++TG++
Sbjct: 282 KATALRMLRAKLYEKELQEREVQASELAGEKKDIGWGSQIRSYVLHPYKMVKDLRTGVES 341
Query: 302 PDFNSVLDGNIKPFIEAHINS-RRS-SDTD 329
+ ++VLDG ++ F+ A + RR D+D
Sbjct: 342 GNPDAVLDGALEDFVVAFLMGVRRDVKDSD 371
>TAIR|locus:2010748 [details] [associations]
symbol:AT1G56350 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
EMBL:CP002684 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:SAVRITY
IPI:IPI00540527 RefSeq:NP_176032.2 UniGene:At.42791
ProteinModelPortal:F4I532 SMR:F4I532 PRIDE:F4I532
EnsemblPlants:AT1G56350.1 GeneID:842089 KEGG:ath:AT1G56350
Uniprot:F4I532
Length = 482
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 101/333 (30%), Positives = 169/333 (50%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDPT + ++ + L +K V + R E ++ +LA+ E D L
Sbjct: 153 DLWDDPTHAGKISREHGSLTGKMKGVMTFE--RELLEHIDML-KLAKEEN-DSELESETL 208
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+A +D+ ++ + E+ LL ND + ++AG+ G WA ++ MY WA +
Sbjct: 209 KALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRK 268
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
+ VVD+ + G+K ATI+ EYA+GY E G H L+ F +G H + A
Sbjct: 269 FSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRH-TSFAA 327
Query: 180 VDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V V+P+ + S ++I+D DL F S G+ + A I HIPTGI ER
Sbjct: 328 VAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNER 387
Query: 237 NHFANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQD 294
+ +NK A+ L+++L + + Q N +++ I W + R YV HPY++V+D
Sbjct: 388 SQHSNKASAMAVLQSRLDQLEMARQTAMNAQ--HTQSLTEISWGNQIRTYVLHPYRMVKD 445
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++T ++ D +SVL+G++ FI + ++S D
Sbjct: 446 LRTNYEVSDPDSVLEGDLDGFILSFLSSSLDKD 478
>UNIPROTKB|P07012 [details] [associations]
symbol:prfB species:83333 "Escherichia coli K-12"
[GO:0015858 "nucleoside transport" evidence=IMP] [GO:0015864
"pyrimidine nucleoside transport" evidence=IMP] [GO:0015862
"uridine transport" evidence=IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA;IDA] [GO:0006415 "translational
termination" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR Gene3D:3.30.160.20 EMBL:U28375
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 EMBL:M11520 EMBL:J03795 PIR:C65073
RefSeq:NP_417367.1 RefSeq:YP_491092.1 PDB:1GQE PDB:1MI6 PDB:1ML5
PDBsum:1GQE PDBsum:1MI6 PDBsum:1ML5 ProteinModelPortal:P07012
SMR:P07012 DIP:DIP-10559N IntAct:P07012 MINT:MINT-1238444
PaxDb:P07012 PRIDE:P07012 EnsemblBacteria:EBESCT00000002308
EnsemblBacteria:EBESCT00000016130 GeneID:12930712 GeneID:947369
KEGG:ecj:Y75_p2823 KEGG:eco:b2891 PATRIC:32121192 EchoBASE:EB0755
EcoGene:EG10762 BioCyc:EcoCyc:EG10762-MONOMER
BioCyc:ECOL316407:JW5847-MONOMER EvolutionaryTrace:P07012
Genevestigator:P07012 GO:GO:0015862 Uniprot:P07012
Length = 365
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 95/325 (29%), Positives = 172/325 (52%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI Q +R+
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQNDRS 279
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK +A+ ++KAKL + ++ + ++ W + R YV + ++D++T
Sbjct: 280 QHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRT 338
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINS 322
G++ + +VLDG++ FIEA + +
Sbjct: 339 GVETRNTQAVLDGSLDQFIEASLKA 363
>TIGR_CMR|ECH_0705 [details] [associations]
symbol:ECH_0705 "peptide chain release factor 2,
programmed frameshift" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 eggNOG:COG1186
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_507510.1
ProteinModelPortal:Q2GGC3 STRING:Q2GGC3 GeneID:3927613
KEGG:ech:ECH_0705 PATRIC:20576858 ProtClustDB:CLSK748740
Uniprot:Q2GGC3
Length = 366
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 93/326 (28%), Positives = 163/326 (50%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + + +L + A K +N+ +L EE +L + D A
Sbjct: 45 SLWDDNSLAQRILCERARISKTLNSFTELE---EEYNYYTELLSVINNDTDELLNELEAG 101
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD-KEGY 123
L + + + + E+ L D + I++G+ G W+ L MYVRWA+ +
Sbjct: 102 LAKLKEKVQKKEVECLFSNEADHNDCFIEIQSGAGGTESNDWSSMLFRMYVRWAEIYHNF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEATLACVD 181
+ +V K + GVKSATI+ + A+G+ E+G H L+ P N + T + +
Sbjct: 162 KTEIVHKLDGEEVGVKSATIKVIGDNAYGWAKTESGIHRLVRISPFNSNAKRHTTFSSIL 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V P+ E + +++I D+DL + + G+ + + A I HIP+GI VQ R+
Sbjct: 222 VSPVINEDT-NIEILDKDLRIDTYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNNRSQ 280
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQDVKT 297
N +A N LK++L + ++ ++ + NI W + R YV HPY++V+D++T
Sbjct: 281 HQNLAEAHNLLKSRLYQLKLQEKEKKMA-EEHNKRCNIGWGNQIRSYVMHPYQMVKDIRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G ++ + NSVLDGN+ FI + + ++
Sbjct: 340 GHEVGNVNSVLDGNLDSFIISALTTK 365
>TIGR_CMR|SPO_2585 [details] [associations]
symbol:SPO_2585 "peptide chain release factor 2"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.160.20 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_167798.1
ProteinModelPortal:Q5LQA8 SMR:Q5LQA8 GeneID:3194310
KEGG:sil:SPO2585 PATRIC:23378573 Uniprot:Q5LQA8
Length = 375
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 96/327 (29%), Positives = 166/327 (50%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALK-DLRYKAEEAKLIAQLAEMEAIDYGL 57
V + NLWD+P + +++ + L D+L + ++ DL A+ +LI +L EME D +
Sbjct: 39 VEDPNLWDNPENAQKLMRERQTLVDALDIYKGIETDL---ADNIELI-ELGEMED-DQDV 93
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K A A + + + E+ LL G D + I AG+ G WA L MYVRW
Sbjct: 94 IKDAEAALKALRERAAEKELEALLDGEADGNDTFLEINAGAGGTESCDWASMLARMYVRW 153
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEA 175
A+K+GY+ + + G+KSA + A+G+L E+G H L+ P + +
Sbjct: 154 AEKKGYKVELQSESAGDEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYDAAAKRHT 213
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ + V V P+ ++ + +++++ D+ + S G+ + A I HIPTGI V S
Sbjct: 214 SFSSVWVYPV-VDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTS 272
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKL 291
E++ N+ A+ LK++L ++ + ++ EA + W + R YV PY++
Sbjct: 273 -SEKSQHQNRDIAMKALKSRLYQQELDRRNAEINAA-HEAKGDAGWGNQIRSYVLQPYQM 330
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIEA 318
V+D++TG + D VLDG + F+ A
Sbjct: 331 VKDLRTGHETSDTKGVLDGALDGFMAA 357
>TIGR_CMR|NSE_0604 [details] [associations]
symbol:NSE_0604 "peptide chain release factor 2,
programmed frameshift" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 eggNOG:COG1186 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 HOGENOM:HOG000074814
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020
RefSeq:YP_506484.1 ProteinModelPortal:Q2GDG2 STRING:Q2GDG2
GeneID:3931929 KEGG:nse:NSE_0604 PATRIC:22681243 OMA:SAVRITY
ProtClustDB:CLSK2527643 Uniprot:Q2GDG2
Length = 365
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LF 58
+V + LW+D +++ ++L+K + ++ +LK+ + + + + ++ E+ + D+
Sbjct: 38 LVDSPTLWEDQSRA-QLLLK--EKSQIETSLKEFKELSIQLDDLIEMIELASKDHEEETM 94
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K R L + + + + E+ L G D + I++G+ G WA LL MY RWA
Sbjct: 95 KDLERELLLLKEKIQKKEIECLFSGEADGNDCLLEIQSGAGGTESNDWAMMLLRMYTRWA 154
Query: 119 D-KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEA 175
+ ++ ++VDK + G+KS T++ + A+G+ ETG H L+ P + +
Sbjct: 155 EIYHKFQVQIVDKVEGEETGIKSCTLKVMGKNAYGWARTETGVHRLVRISPFDANAKRHT 214
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A + V P +E ++ I ++DL + + G+ + + A I H+P+ I VQS
Sbjct: 215 SFAKIFVSPC-IEGEINISIDEKDLKIDTYRASGAGGQHVNKTESAIRITHLPSKIVVQS 273
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKR-EAIVNIWQRETRRYVSHPYKL 291
R+ NK +A+ LK++L I + ++ + E + W + R YV HPY++
Sbjct: 274 QSSRSQHQNKAEAMQMLKSRLYEIELRKKEEKLNAARNVEDSIG-WGYQIRSYVLHPYQM 332
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
++D++TG ++ + SVLDG++ FI A I++
Sbjct: 333 IKDLRTGHEVGNITSVLDGDLDSFIIATISN 363
>TIGR_CMR|CJE_1628 [details] [associations]
symbol:CJE_1628 "peptide chain release factor 2"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG1186
GO:GO:0016149 RefSeq:YP_179609.1 ProteinModelPortal:Q5HSX6
STRING:Q5HSX6 GeneID:3232256 KEGG:cjr:CJE1628 PATRIC:20045053
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
BioCyc:CJEJ195099:GJC0-1658-MONOMER PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 Uniprot:Q5HSX6
Length = 365
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 93/331 (28%), Positives = 160/331 (48%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLR--YKA-EEAKLIAQLAEMEAIDYGLFKRAY 62
+ W D K V+ K + K+ N LK+ + A +A + LA E D + +
Sbjct: 44 SFWSD-VKQAGVIGK--EKTKITNLLKNYENAFNALNDASELFDLANSEN-DTETLEALF 99
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ + + E+S LL G ND + A V+I G+ G WA L MY+R+ ++EG
Sbjct: 100 NDAPKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREG 159
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D + G+K + + E A+GYL E G H L+ F + H + +
Sbjct: 160 FKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRH-TSFSS 218
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V V P L+ +++I ++D+ + + G+ + + A I H PTGI VQ +R
Sbjct: 219 VMVSPE-LDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDR 277
Query: 237 NHFANKMKALNRLKAKL--LVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
+ NK A LK++L L ++ +Q +N ++ I W + R YV PY+ V+D
Sbjct: 278 SQHKNKATAFKMLKSRLYELELMKQQDSANTG--EKSEIG--WGHQIRSYVLFPYQQVKD 333
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
++G +++LDG+IK IE + S ++
Sbjct: 334 NRSGEAFSQVDNILDGDIKKMIEGVLISLKA 364
>TIGR_CMR|APH_0479 [details] [associations]
symbol:APH_0479 "peptide chain release factor 2,
programmed frameshift" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1186 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 RefSeq:YP_505078.1 ProteinModelPortal:Q2GKM3
STRING:Q2GKM3 GeneID:3930254 KEGG:aph:APH_0479 PATRIC:20949594
ProtClustDB:CLSK747346 Uniprot:Q2GKM3
Length = 376
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 88/323 (27%), Positives = 159/323 (49%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRAYRA 64
+LWDD K+ +L ++ +V L R +E K +A+LAEM + D F A
Sbjct: 45 SLWDDAEKAKSLL---SERSRVSAVLTSFRVLEKEHKDLAELAEMISDSDDRDFLATINA 101
Query: 65 SLDVSKL-LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK-EG 122
L KL + Q + + D +TI++G+ G W LL MY +WA+
Sbjct: 102 ELQSLKLRISQKKTECMFSHEADANSCFLTIRSGAGGTESSDWVCMLLRMYTKWAESFHE 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA----TLA 178
+ VD + G+K+ T++ A+G+ E+G H L+ F H A + A
Sbjct: 162 FTVETVDSVDGEETGLKAVTVKICGIGAYGWARTESGIHRLVRI--SPFDHAAKRHTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V P+ ++ D++I ++DL + + G+ + + A I HIP+G+ VQ
Sbjct: 220 SVEVSPV-VDHEIDIKILEKDLRIDTYRASGAGGQHVNKTESAVRITHIPSGMVVQCQTS 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ +A + LK++L + ++ ++ + W + R YV HPY++V+D+
Sbjct: 279 RSQHQNRAEAYSLLKSRLYEMELQEKEKRMAQDHQNKCEIGWGHQIRSYVMHPYRMVKDL 338
Query: 296 KTGIQLPDFNSVLDGNIKPFIEA 318
+TG + + ++V++G++ FI A
Sbjct: 339 RTGHETGNVDAVMNGDLDAFITA 361
>DICTYBASE|DDB_G0288835 [details] [associations]
symbol:prfB "class I peptide chain release factor"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 dictyBase:DDB_G0288835
GO:GO:0005737 Gene3D:3.30.160.20 GenomeReviews:CM000154_GR
eggNOG:COG1186 EMBL:AAFI02000125 GO:GO:0016149
PANTHER:PTHR11075:SF6 RefSeq:XP_636549.1 ProteinModelPortal:Q54IC8
STRING:Q54IC8 EnsemblProtists:DDB0237485 GeneID:8626834
KEGG:ddi:DDB_G0288835 InParanoid:Q54IC8 OMA:LINESHN Uniprot:Q54IC8
Length = 424
Score = 271 (100.5 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 74/244 (30%), Positives = 121/244 (49%)
Query: 74 QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCC 133
+ E+ L+ G +D +G + I+AG+ G W + L MY +W ++GY ++D
Sbjct: 169 ELEVKALMNGKDDSKGCLLEIQAGAGGNDSMDWTKILFEMYCKWGARKGYNVEIIDTADG 228
Query: 134 KNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEATLACVDVVPLFLETSP 191
+ G + A+++ + A+G+L E G H LI P + S + A V V P+ + S
Sbjct: 229 EFG-YRHASLKIDGHNAYGWLRTEMGIHRLIRISPFSSSGKRHTSFASVVVYPIS-DDSI 286
Query: 192 DLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNR 248
+ I +DL F S G+ + + A I HIPTGI+V S ER+ NK L
Sbjct: 287 KINIDPKDLHFETLRSSGAGGQHVNKTESAVRIVHIPTGISVLSSSERSQHQNKSNGLLL 346
Query: 249 LKAKLLVIVGEQGVSNVSCIKREAIVNIWQRET--RRYVSHPYKLVQDVKTGIQLPDFNS 306
LK+KL ++ + + E N W ++ R Y HP + V+D +TGI++ +
Sbjct: 347 LKSKLYSHELKKKIEAEKSFRDELGKNSWASDSVVRNYSMHPQERVKDQRTGIEVLQISK 406
Query: 307 VLDG 310
+LDG
Sbjct: 407 ILDG 410
>UNIPROTKB|Q9KQ25 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.160.20 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 78/283 (27%), Positives = 135/283 (47%)
Query: 48 AEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWA 107
AEM + K A A + +L D+ ++ L + PND + I+AG+ G I+A
Sbjct: 74 AEMREMAQDEIKAAKAA---IERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFA 130
Query: 108 EQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167
L MY R+A+K+G+R V+ ++GG K + + A+G L E+G H + P
Sbjct: 131 GDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVP 190
Query: 168 NGSFPHEA-TLAC-VDVVPLFLETS-PDLQISDEDL-LFSSPSLPGERQSIAKPAACIQH 223
T AC V V+P E P+++ SD + F S G+ + A I H
Sbjct: 191 ATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITH 250
Query: 224 IPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETR- 282
+PTGI V+ ER+ NK KA++ L A++ + + +S +R ++ R R
Sbjct: 251 LPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN-LLGSGDRSDRI 309
Query: 283 RYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
R ++P V D + + + V++G+++ I+ I+ ++
Sbjct: 310 RTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIDPVIHEHQA 352
>TIGR_CMR|VC_2179 [details] [associations]
symbol:VC_2179 "peptide chain release factor 1" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 78/283 (27%), Positives = 135/283 (47%)
Query: 48 AEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWA 107
AEM + K A A + +L D+ ++ L + PND + I+AG+ G I+A
Sbjct: 74 AEMREMAQDEIKAAKAA---IERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFA 130
Query: 108 EQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167
L MY R+A+K+G+R V+ ++GG K + + A+G L E+G H + P
Sbjct: 131 GDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVP 190
Query: 168 NGSFPHEA-TLAC-VDVVPLFLETS-PDLQISDEDL-LFSSPSLPGERQSIAKPAACIQH 223
T AC V V+P E P+++ SD + F S G+ + A I H
Sbjct: 191 ATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITH 250
Query: 224 IPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETR- 282
+PTGI V+ ER+ NK KA++ L A++ + + +S +R ++ R R
Sbjct: 251 LPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN-LLGSGDRSDRI 309
Query: 283 RYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
R ++P V D + + + V++G+++ I+ I+ ++
Sbjct: 310 RTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIDPVIHEHQA 352
>TIGR_CMR|CPS_3552 [details] [associations]
symbol:CPS_3552 "peptide chain release factor 1"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 OMA:EMPEINP
TIGRFAMs:TIGR00019 RefSeq:YP_270226.1 ProteinModelPortal:Q47Y94
SMR:Q47Y94 STRING:Q47Y94 GeneID:3522324 KEGG:cps:CPS_3552
PATRIC:21470035 BioCyc:CPSY167879:GI48-3580-MONOMER Uniprot:Q47Y94
Length = 362
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 86/326 (26%), Positives = 152/326 (46%)
Query: 7 LWDDPT--KSNEVLVKLADSLKVVNALKDL--RYK-AEEAKLIAQLA------EMEAIDY 55
L DP E L+ K ++A+ + YK AE+ A+L +M +
Sbjct: 22 LLSDPATISDQEKFRALSKEFKQLDAVTSVFNNYKSAEDDFSTAELMLKDDDPDMREMAQ 81
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
FK A +A D++ D+ ++ L R PND V I+AG+ G I+A L MY
Sbjct: 82 EEFKDAKKAVADIA---DELQILLLPRDPNDDNNCFVEIRAGAGGDEAAIFAGDLFRMYS 138
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP-NGSFPHE 174
R+A+K+G++ V++ + GG K ++ E FG++ E+G H + P S
Sbjct: 139 RYAEKKGWKIEVMNSNESEQGGYKELIMKVNGEGVFGHMKFESGGHRVQRVPATESQGRV 198
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQ 231
T AC VV + + ++I+ DL F + G+ + A I HIPTG+ V+
Sbjct: 199 HTSACTVVVMPEIPEADAIEINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVE 258
Query: 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKL 291
+R+ N+ +A++ L+A+L E+ S +R + + + E R + P
Sbjct: 259 CQEQRSQHKNRAQAMSVLQARLQQAEDEKRRSEEESSRRNLVASGDRSERIRTYNFPQGR 318
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIE 317
+ D + + L N +++G+++ +E
Sbjct: 319 MSDHRINLTLYRLNEIMEGSLQLVME 344
>TIGR_CMR|CHY_2563 [details] [associations]
symbol:CHY_2563 "peptide chain release factor 1"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0
OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
RefSeq:YP_361356.1 ProteinModelPortal:Q3A928 SMR:Q3A928
STRING:Q3A928 GeneID:3727190 KEGG:chy:CHY_2563 PATRIC:21278175
BioCyc:CHYD246194:GJCN-2562-MONOMER Uniprot:Q3A928
Length = 358
Score = 237 (88.5 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 77/312 (24%), Positives = 153/312 (49%)
Query: 22 ADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL-DVSKLLDQYEMS-K 79
A+ ++V ++ + +E + ++ + E +D F+ ++ L D+ + ++ E K
Sbjct: 39 AEIEEIVQVYREYKKTVKEIEDAERMLD-EKLDPD-FRELVQSELHDLKERREELEAKLK 96
Query: 80 LL---RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG 136
+L + PND + + I+AG+ G ++A L MY ++AD+ G++ ++D G
Sbjct: 97 ILLLPKDPNDEKNVIMEIRAGAGGEEAALFAGDLFRMYSKYADRMGWKVEIMDSHPTDLG 156
Query: 137 GVKSATIEFEFEYAFGYLSGETGAHCLINFP---NGSFPHEATLACVDVVPLFLETSPDL 193
G K E + + + E+G H + P +G H +T A V V+P E ++
Sbjct: 157 GFKEVIFTIEGKGVYSRMKFESGVHRVQRVPTTESGGRIHTST-ATVAVLPEAEEV--EV 213
Query: 194 QISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLK 250
+I+ DL +F + G+ + + A I HIPTGI V E++ NK +A+ L+
Sbjct: 214 EINPNDLRIDVFCASGAGGQHVNKTESAVRITHIPTGIVVTCQDEKSQHKNKERAMKILR 273
Query: 251 AKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310
A+LL ++ + ++ ++ + + E R + P V D + G+ L ++VL+G
Sbjct: 274 ARLLDKARQEQEAELASARKSQVGTGDRSERIRTYNFPQNRVTDHRIGLTLHRLDAVLEG 333
Query: 311 NIKPFIEAHINS 322
++ I+A I +
Sbjct: 334 DLDEIIDALITT 345
>TIGR_CMR|BA_5572 [details] [associations]
symbol:BA_5572 "peptide chain release factor 1"
species:198094 "Bacillus anthracis str. Ames" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:NP_847729.1
RefSeq:YP_022240.1 RefSeq:YP_031417.1 ProteinModelPortal:Q81JX1
SMR:Q81JX1 DNASU:1085262 EnsemblBacteria:EBBACT00000012375
EnsemblBacteria:EBBACT00000014683 EnsemblBacteria:EBBACT00000022198
GeneID:1085262 GeneID:2819896 GeneID:2852042 KEGG:ban:BA_5572
KEGG:bar:GBAA_5572 KEGG:bat:BAS5178
BioCyc:BANT260799:GJAJ-5253-MONOMER
BioCyc:BANT261594:GJ7F-5432-MONOMER Uniprot:Q81JX1
Length = 355
Score = 233 (87.1 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 73/304 (24%), Positives = 140/304 (46%)
Query: 21 LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80
+ ++++V KD+R + ++AK + + +++A + K K L + + L
Sbjct: 41 IQETVEVYREYKDVREQLKDAKAMLE-DKLDAEMREMVKEEVSELESQEKTLSE-RLKIL 98
Query: 81 L--RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGV 138
L + PND + V ++ + G ++A L MY R+A+ +G++ +++ + GG
Sbjct: 99 LVPKDPNDDKNVIVEVRGAAGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGY 158
Query: 139 KSATIEFEFEYAFGYLSGETGAHCLINFP---NGSFPHEATLACVDVVPLFLETSPDLQI 195
K + AF L E GAH + P +G H +T A V V+P E D+
Sbjct: 159 KEIIFMINGKGAFAKLKFENGAHRVQRVPETESGGRIHTST-ATVAVLPEAEEVEIDIHE 217
Query: 196 SDEDL-LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLL 254
D + F+S G+ + A + H+PTG+ V E++ NK KA+ L+A++
Sbjct: 218 KDVRVDTFASSGPGGQSVNTTMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVY 277
Query: 255 VIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKP 314
++ + +++A+ + E R + P V D + G+ + + +L G +
Sbjct: 278 DKFRQEAQAEYDQNRKQAVGTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDD 337
Query: 315 FIEA 318
FI A
Sbjct: 338 FINA 341
>TIGR_CMR|CBU_1965 [details] [associations]
symbol:CBU_1965 "peptide chain release factor 1"
species:227377 "Coxiella burnetii RSA 493" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016149 EMBL:X78969 eggNOG:COG0216 HOGENOM:HOG000074815
KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
PIR:A61648 RefSeq:NP_820940.1 ProteinModelPortal:P47849 SMR:P47849
PRIDE:P47849 GeneID:1209878 KEGG:cbu:CBU_1965 PATRIC:17932673
BioCyc:CBUR227377:GJ7S-1939-MONOMER Uniprot:P47849
Length = 361
Score = 231 (86.4 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 70/258 (27%), Positives = 122/258 (47%)
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+L +L DQ ++ + + PND + I+AG+ G I+A L MY R+A+ +G+R
Sbjct: 88 TLKKEELEDQLKLLLVPKDPNDERNVFLEIRAGTGGNEAAIFAGDLFRMYARYAETKGWR 147
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP-NGSFPHEATLACVDVV 183
+V ++GG K E + L E+GAH + P S T AC +
Sbjct: 148 VNIVSAHEGEHGGFKEVIARVIGEGVYSQLKFESGAHRVQRVPVTESQGRIHTSACTVAI 207
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
++ ++I+ +L F + G+ + A I H+PTG+ V+ ER+
Sbjct: 208 MPEVDEIDQIKINPAELRIDTFRASGAGGQHVNRTDSAIRITHLPTGVVVECQDERSQHK 267
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVS-CIKREAIVNIWQRETR-RYVSHPYKLVQDVKTG 298
NK +A++ L++KLL E+ + KR+++V R R R + P V D +
Sbjct: 268 NKARAMSLLQSKLLA--AERAKQDQEQAAKRKSLVGSGDRSERIRTYNFPQGRVTDHRIN 325
Query: 299 IQLPDFNSVLDGNIKPFI 316
+ L + V++G++ P I
Sbjct: 326 LTLYQLDEVIEGDLDPVI 343
>TIGR_CMR|GSU_3104 [details] [associations]
symbol:GSU_3104 "peptide chain release factor 1"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 OMA:SVMLEIR RefSeq:NP_954145.1
ProteinModelPortal:Q748B1 SMR:Q748B1 GeneID:2688463
KEGG:gsu:GSU3104 PATRIC:22029063
BioCyc:GSUL243231:GH27-3086-MONOMER Uniprot:Q748B1
Length = 355
Score = 221 (82.9 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 64/252 (25%), Positives = 122/252 (48%)
Query: 70 KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVD 129
+L + ++ L R PND + I+AG+ G ++A L MY R+A++ ++ V+
Sbjct: 87 ELEGEIKLLLLPRDPNDDRNVILEIRAGTGGDESALFAGDLFRMYSRFAERNRWKVEVMS 146
Query: 130 KCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA-TLAC-VDVVPLFL 187
+ GG K E + F L E+G H + P T AC V V+P
Sbjct: 147 ASESERGGFKEIVALIEGQGVFAKLKYESGTHRVQRVPETEAQGRIHTSACTVAVLPEAE 206
Query: 188 ETSPDLQISDEDL-LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ D+ +D + ++ + G+ + + A I HIPTGI V+ ER+ N+ KA+
Sbjct: 207 DIEVDINPADLKIDVYRASGAGGQHVNKTESAVRITHIPTGIVVECQDERSQIKNRAKAM 266
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LK K+L + ++ + ++ +++ + + + E R + P + D + G+ L +S
Sbjct: 267 KVLKTKILDGLHQEQNARIAADRKQQVGSGDRSERIRTYNFPQGRMTDHRIGLTLYRLDS 326
Query: 307 VLDGNIKPFIEA 318
+++G+I ++A
Sbjct: 327 LMEGDIAEVVDA 338
>UNIPROTKB|P66016 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842576 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 PIR:G70773 RefSeq:NP_215815.1 RefSeq:NP_335786.1
RefSeq:YP_006514676.1 ProteinModelPortal:P66016 SMR:P66016
PRIDE:P66016 EnsemblBacteria:EBMYCT00000003633
EnsemblBacteria:EBMYCT00000071350 GeneID:13319881 GeneID:886948
GeneID:924722 KEGG:mtc:MT1338 KEGG:mtu:Rv1299 KEGG:mtv:RVBD_1299
PATRIC:18124710 TubercuList:Rv1299 OMA:VEIHAND Uniprot:P66016
Length = 357
Score = 220 (82.5 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 67/247 (27%), Positives = 112/247 (45%)
Query: 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSA 141
R P+D + + +K+G G ++A L MY+R+A++ G+ V+D+ GG K A
Sbjct: 99 RDPHDADDIVLEVKSGEGGEESALFAADLARMYIRYAERHGWAVTVLDETTSDLGGYKDA 158
Query: 142 TIEFEFEY-----AFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQ 194
T+ + + + E G H + P + A V V P E +Q
Sbjct: 159 TLAIASKADTPDGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVG-QVQ 217
Query: 195 ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKA 251
I + DL +F S G+ + A I H+PTGI V ER+ NK +AL L A
Sbjct: 218 IDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKTRALQVLAA 277
Query: 252 KLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGN 311
+L + EQ +++ S + I + + E R + P + D + G + + + VLDG+
Sbjct: 278 RLQAMAEEQALADASADRASQIRTVDRSERIRTYNFPENRITDHRIGYKSHNLDQVLDGD 337
Query: 312 IKPFIEA 318
+ +A
Sbjct: 338 LDALFDA 344
>TIGR_CMR|SO_3833 [details] [associations]
symbol:SO_3833 "peptide chain release factor 1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:GEAGGYK ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:NP_719366.1 ProteinModelPortal:Q8EAR3
SMR:Q8EAR3 GeneID:1171478 KEGG:son:SO_3833 PATRIC:23527352
Uniprot:Q8EAR3
Length = 363
Score = 216 (81.1 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 65/264 (24%), Positives = 123/264 (46%)
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
A +++ +L + ++ L + PND A + I+AG+ G I+A L MY R+A+ +
Sbjct: 87 AKVELERLEAELQILLLPKDPNDDTNAFIEIRAGAGGDEAAIFAGDLFRMYSRYAEANRW 146
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVV 183
+ ++ ++GG K ++ E A+G L E+G H + P + V VV
Sbjct: 147 QLEIMSSNEGEHGGFKEIIVKVSGEGAYGKLKFESGGHRVQRVPETESQGRVHTSAVTVV 206
Query: 184 PLF-LETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+ + + + I+ DL F S G+ + A I HIPTGI V+ +R+
Sbjct: 207 VMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQH 266
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A++ L A++ + E+ S +R + + + E R + P V + + +
Sbjct: 267 KNRAQAMSVLAARIQAVEDEKRRSAEESTRRSLVASGDRSERVRTYNFPQGRVSEHRINL 326
Query: 300 QLPDFNSVLDGNIK----PFIEAH 319
L N V++G++ P ++ H
Sbjct: 327 TLYRLNEVMEGDLDAILGPLMQEH 350
>TIGR_CMR|ECH_0597 [details] [associations]
symbol:ECH_0597 "peptide chain release factor 1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:YP_507408.1
ProteinModelPortal:Q2GGM5 SMR:Q2GGM5 STRING:Q2GGM5 GeneID:3927422
KEGG:ech:ECH_0597 PATRIC:20576648
BioCyc:ECHA205920:GJNR-599-MONOMER Uniprot:Q2GGM5
Length = 359
Score = 215 (80.7 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 67/265 (25%), Positives = 125/265 (47%)
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y + K+ + ++S L + +D A + I+AG+ G ++ L MY ++A+++
Sbjct: 84 YERQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEAALFVTDLYRMYTKYAEQK 143
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPN--GSFPHEATLAC 179
++ ++ GG K ++ F L E+G H + P S + A
Sbjct: 144 NWKFEQINSSSTGIGGHKEISLCISGSNVFARLKFESGVHRVQRVPETEASGRLHTSAAT 203
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V V+P E DL+I ++DL ++ S G+ + A I HIP+GI V E+
Sbjct: 204 VAVLPEIEEV--DLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVIQQDEK 261
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK KAL L+A+L + ++ + +S +++ I + + E R + P + D +
Sbjct: 262 SQHKNKSKALKVLRARLYNLEKQKRDAEISQMRKSQIGSGDRSERIRTYNFPQSRITDHR 321
Query: 297 TGIQLPDFNSVL-DGNIKPFIEAHI 320
+ L + ++ +GN+ FIEA I
Sbjct: 322 INLTLYRLDDIMKEGNLDEFIEALI 346
>TIGR_CMR|NSE_0406 [details] [associations]
symbol:NSE_0406 "peptide chain release factor 1"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_506293.1 ProteinModelPortal:Q2GE03 SMR:Q2GE03
STRING:Q2GE03 GeneID:3931950 KEGG:nse:NSE_0406 PATRIC:22680869
ProtClustDB:CLSK2527657 BioCyc:NSEN222891:GHFU-429-MONOMER
Uniprot:Q2GE03
Length = 367
Score = 213 (80.0 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 78/325 (24%), Positives = 149/325 (45%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ--LAEMEAIDYGLFKRAYRASLDVS 69
+K ++ +L ++++ K L+ + +L+ + L + E + G K +A DV
Sbjct: 34 SKLSKEYAELKPKVELIARYKKLKEEQAYLELLVKNPLEDQEIREIG--KSDLQAIQDVI 91
Query: 70 KLLDQYEMSKLL--RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
L+ E+ ++L + +D + ++AG+ G ++A L +MY ++A++ +R +
Sbjct: 92 PKLE-LEIKRMLLPKDKDDALNVMLEVRAGTGGDEAALFAASLFHMYQKYAERMKWRFEI 150
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVP 184
+ + GG K A F L E+G H + P H +T A V V+P
Sbjct: 151 ISISHNEIGGYKEANASISGSDVFAKLKFESGVHRVQRVPETESAGRIHTST-ATVAVLP 209
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
D++I+D+DL ++ S G+ + A I HIPTGI V E++ N
Sbjct: 210 E--PEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQDEKSQHKN 267
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ KA+ L+ +L I + +S +++ I + + E R + P + D + +
Sbjct: 268 RAKAMKVLRVRLYEIERNKVQQEISSMRKSQIGSGERSEKTRTYNFPQGRITDHRINLTT 327
Query: 302 PDFN-SVLDGNIKPFIEAHINSRRS 325
N +V +G ++P IEA I +
Sbjct: 328 YRINETVKEGELEPIIEALIRENEA 352
>TIGR_CMR|DET_1210 [details] [associations]
symbol:DET_1210 "peptide chain release factor 1"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_181923.1 ProteinModelPortal:Q3Z776
STRING:Q3Z776 GeneID:3229489 KEGG:det:DET1210 PATRIC:21609455
OMA:SVMLEIR BioCyc:DETH243164:GJNF-1211-MONOMER Uniprot:Q3Z776
Length = 355
Score = 210 (79.0 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 87/296 (29%), Positives = 132/296 (44%)
Query: 35 RYKA--EEAKLIAQLAEMEAI-DYGLFKRAYRASLDVSK--LLDQYEMSKLLRGPNDVEG 89
RYKA +E + L E+E D R ASL+ S L Q + L + PND +
Sbjct: 50 RYKAISKELEDTKNLLEIEKDEDMKDMVRGEIASLEKSMADLYTQMTLELLPKDPNDDKS 109
Query: 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY 149
+ I+AG+ G ++A L MY R+A + ++ V+D G +K E +
Sbjct: 110 IIMEIRAGTGGDEAGLFAADLYKMYTRYALLKNWKTEVIDINGNVAGIIKEVVFEVNGKG 169
Query: 150 AFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVPLFLETSPDLQISDEDL-LFSSP 205
AF L E G H + P H +T A V V+P E D+ + D + +F S
Sbjct: 170 AFSRLKYERGVHRVQRVPQTEASGRIHTST-ATVAVLPQVEEVDIDINMDDVRVDIFHSS 228
Query: 206 SLPGERQSIAKPAACIQ--HIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQG-V 262
G Q++ K A I+ HIPTG+ V ER+ NK KA L+A+L+ + EQ V
Sbjct: 229 GAGG--QNVQKVATAIRLTHIPTGLVVCCQDERSQLKNKNKAFAVLRARLMEL--EQSKV 284
Query: 263 SNVSCIKREAIVNIWQRETR-RYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIE 317
R A V R + R + P + D + G+ + +L+G + I+
Sbjct: 285 DEERTESRRAQVGQADRSEKIRTYNFPQDRLTDHRIGLTAHNLPHILEGYLDEIID 340
>UNIPROTKB|P0A7I0 [details] [associations]
symbol:prfA "peptide chain release factor RF1"
species:83333 "Escherichia coli K-12" [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA;IDA] [GO:0006415
"translational termination" evidence=IEA;IMP] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
Gene3D:3.30.160.20 GO:GO:0043022 GO:GO:0016149 EMBL:M25323
EMBL:U18555 EMBL:D28567 PDB:2B3T PDBsum:2B3T eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 EMBL:M11519 PIR:H64867 RefSeq:NP_415729.1
RefSeq:YP_489478.1 ProteinModelPortal:P0A7I0 SMR:P0A7I0
DIP:DIP-35936N IntAct:P0A7I0 MINT:MINT-1219241 PaxDb:P0A7I0
PRIDE:P0A7I0 EnsemblBacteria:EBESCT00000004821
EnsemblBacteria:EBESCT00000015260 GeneID:12931113 GeneID:949002
KEGG:ecj:Y75_p1183 KEGG:eco:b1211 PATRIC:32117674 EchoBASE:EB0754
EcoGene:EG10761 BioCyc:EcoCyc:EG10761-MONOMER
BioCyc:ECOL316407:JW1202-MONOMER EvolutionaryTrace:P0A7I0
Genevestigator:P0A7I0 Uniprot:P0A7I0
Length = 360
Score = 209 (78.6 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 75/308 (24%), Positives = 137/308 (44%)
Query: 20 KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK 79
+L+D + + ++ E A+++ EM + + A S +L Q ++
Sbjct: 44 QLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKS---EQLEQQLQVLL 100
Query: 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVK 139
L + P+D A + ++AG+ G ++A L MY R+A+ +R ++ ++GG K
Sbjct: 101 LPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK 160
Query: 140 SATIEFEFEYAFGYLSGETGAHCLINFP-NGSFPHEATLAC-VDVVPLFLETS-PDLQIS 196
+ + +G L E+G H + P S T AC V V+P + PD+ +
Sbjct: 161 EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPA 220
Query: 197 DEDL-LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLV 255
D + F S G+ + A I H+PTGI V+ ER+ NK KAL+ L A++
Sbjct: 221 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHA 280
Query: 256 IVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGN---- 311
+ + +R + + + + R + P V D + + L + V++G
Sbjct: 281 AEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDML 340
Query: 312 IKPFIEAH 319
I+P I+ H
Sbjct: 341 IEPIIQEH 348
>TAIR|locus:2041409 [details] [associations]
symbol:AT2G47020 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IEA] [GO:0006415
"translational termination" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:3.30.160.20 GO:GO:0016149
KO:K02835 OMA:EMPEINP TIGRFAMs:TIGR00019 EMBL:BT030058
IPI:IPI00517548 RefSeq:NP_182225.3 UniGene:At.43988
ProteinModelPortal:A2RVR7 SMR:A2RVR7 PRIDE:A2RVR7
EnsemblPlants:AT2G47020.1 GeneID:819316 KEGG:ath:AT2G47020
TAIR:At2g47020 PhylomeDB:A2RVR7 Genevestigator:Q3E6W0
Uniprot:A2RVR7
Length = 413
Score = 209 (78.6 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 82/316 (25%), Positives = 140/316 (44%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA---SLDV 68
+++N+ L KL DS+ ++N DLR K +E + L + D + A +++
Sbjct: 85 SRANKELRKLRDSMLLIN---DLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEE 141
Query: 69 SKLLDQYEMSKLL-RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
K L + LL + D + ++AG+ G ++A + MY R++ K+G++ +
Sbjct: 142 EKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDI 201
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFL 187
VD G K A+ +G L E+G H + P + + V L
Sbjct: 202 VDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQ 261
Query: 188 ETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMK 244
D+Q+ +EDL + S G+ + A I H+PTG+ V ER+ N+ K
Sbjct: 262 ADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAK 321
Query: 245 ALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETR-RYVSHPYKLVQDVKTGIQLPD 303
AL L A+L I + S+ S ++ + I + R R R + P V D + GI
Sbjct: 322 ALKVLCARLYEIERLRIQSSRSKLRSDQIGS-GDRSGRIRTYNFPQGRVTDHRVGITHHA 380
Query: 304 FNSVLDG-NIKPFIEA 318
++ G N+ FI+A
Sbjct: 381 IEDMMQGENLDMFIDA 396
>TIGR_CMR|APH_0420 [details] [associations]
symbol:APH_0420 "peptide chain release factor 1"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 RefSeq:YP_505023.1
ProteinModelPortal:Q2GKS8 STRING:Q2GKS8 GeneID:3929978
KEGG:aph:APH_0420 PATRIC:20949454 OMA:EMPEINP ProtClustDB:PRK00591
BioCyc:APHA212042:GHPM-447-MONOMER TIGRFAMs:TIGR00019
Uniprot:Q2GKS8
Length = 359
Score = 202 (76.2 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 79/310 (25%), Positives = 147/310 (47%)
Query: 22 ADSLKVVNALKDLRYKAEEAKLIAQLAEM---EAIDYGLFKRAYRASLDVSKLLD----Q 74
+D L +++ ++ +YK+ + K IA+L E+ + D L A S KLL +
Sbjct: 40 SDLLPIMSLIE--KYKSTQ-KEIAELEELVNSASTDPELRSLAKDESHIKQKLLPKLRHE 96
Query: 75 YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK 134
++S L + +D A + I+AG+ G ++ L MY+++A+++ ++ ++
Sbjct: 97 LQLSLLPKDRDDSRNAILEIRAGTGGEEAALFVGNLYRMYLKYAERKNWKVETINISTTG 156
Query: 135 NGGVKSATIEFEFEYAFGYLSGETGAHCLINFPN--GSFPHEATLACVDVVPLFLETSPD 192
GG K A+ + F L E+G H + P S + A V V+P E D
Sbjct: 157 IGGYKEASFSIGGKDVFARLKFESGVHRVQRVPETESSGRLHTSAATVAVLPEVEEV--D 214
Query: 193 LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRL 249
L+I ++DL ++ S G+ + A I HIPTGI V E++ NK KAL L
Sbjct: 215 LKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQDEKSQHKNKSKALKVL 274
Query: 250 KAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVL- 308
+A+L + ++ +S +++ I + + E R + + D + + + V+
Sbjct: 275 RARLYNLEKQKREEEISKMRKSQIGSGDRSERIRTYNFLQSRITDHRINLTSYRLDYVMK 334
Query: 309 DGNIKPFIEA 318
+G++ FI+A
Sbjct: 335 EGDLDEFIDA 344
>DICTYBASE|DDB_G0283175 [details] [associations]
symbol:prfA "peptide chain release factor 1"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
dictyBase:DDB_G0283175 GO:GO:0005737 GenomeReviews:CM000153_GR
Gene3D:3.30.160.20 EMBL:AAFI02000051 GO:GO:0016149 eggNOG:COG0216
KO:K02835 RefSeq:XP_639198.1 ProteinModelPortal:Q54RE7
STRING:Q54RE7 EnsemblProtists:DDB0237484 GeneID:8623973
KEGG:ddi:DDB_G0283175 InParanoid:Q54RE7 OMA:HAAICIN
ProtClustDB:CLSZ2430394 Uniprot:Q54RE7
Length = 430
Score = 192 (72.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 76/312 (24%), Positives = 141/312 (45%)
Query: 20 KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKL-------L 72
+L ++ + + DL K +E K + + E + G K+ ++ D++KL L
Sbjct: 110 ELQETAEPLGYFGDLIEKLKELKELQTMLVEETDEDG--KQMIKS--DINKLKQEEIEPL 165
Query: 73 DQYEMSKLLRGPNDVEG-ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
++ + LL G D G A + I+AG+ G +++ + + MY + ++G+ ++
Sbjct: 166 EKQLLFSLLPGSKDDAGDAILEIRAGTGGSEAQLFTQDVYEMYRSYCLQKGWTFEPLELS 225
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSP 191
+ GG + T+ + FG+L E+G H + P + + V L
Sbjct: 226 VTEVGGYRDVTVSVSGKGVFGFLKYESGVHRVQRVPLTETQGRIHTSTITVAILPEPKDV 285
Query: 192 DLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNR 248
D+QI D DL ++ S G+ + A I H+PTGI V ER+ N+ KA+
Sbjct: 286 DIQIHDRDLKVDIYRSSGNGGQSVNTTDSAVRITHLPTGITVAMQDERSQHQNRSKAMKI 345
Query: 249 LKAKLLVIVGEQ-GVSNVSCIKREAIVNIWQRETR-RYVSHPYKLVQDVKTGIQLPDFNS 306
LKA+ + E+ + N +R A + R R R ++P + D + I + NS
Sbjct: 346 LKAR--IYERERIRLQNERVSERNAQIGSALRSERIRTYNYPQDRITDHRVSIN-GNLNS 402
Query: 307 VLDGN-IKPFIE 317
++ + + FI+
Sbjct: 403 CMNSDGLDSFID 414
>TIGR_CMR|SPO_2461 [details] [associations]
symbol:SPO_2461 "peptide chain release factor 1"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
HSSP:P0A7I0 ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_167678.1 ProteinModelPortal:Q5LQM7 GeneID:3194030
KEGG:sil:SPO2461 PATRIC:23378321 Uniprot:Q5LQM7
Length = 351
Score = 180 (68.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 64/250 (25%), Positives = 111/250 (44%)
Query: 76 EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN 135
+++ L + D A + I+ G+ G ++A LL MY R+A+ G++ +++ +
Sbjct: 92 QLALLPKDAADARPAMLEIRPGTGGDEAALFAGDLLRMYQRYAEARGWKLELIELQETEL 151
Query: 136 GGVKSATIEFEFEYAFGYLSGETGAHCLINFP---NGSFPHEATLACVDVVPLFLETSPD 192
GG+K E F L E+G H + P +G H + A V V+P + D
Sbjct: 152 GGIKEVVARISGENVFARLKYESGVHRVQRVPETESGGRIHTSA-ATVAVLPEAQDV--D 208
Query: 193 LQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRL 249
+QI D+ S G+ + A I H+P+GI V S E++ N+ A+ L
Sbjct: 209 IQIDPGDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVTS-SEKSQHRNREIAMQVL 267
Query: 250 KAKLLVIVGEQGVSNVSCIKREAIVNIWQRETR-RYVSHPYKLVQDVKTGIQLPDFNSVL 308
K +L + Q + R A V R R R + P + D + + L ++V+
Sbjct: 268 KTRLYDLE-RQRLDRERSASRSAQVGTGDRSERIRTYNFPQGRMTDHRINLTLYKLDAVM 326
Query: 309 DGNIKPFIEA 318
G++ I+A
Sbjct: 327 QGDLDEVIDA 336
>TIGR_CMR|CJE_1784 [details] [associations]
symbol:CJE_1784 "peptide chain release factor 1"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_179756.1 ProteinModelPortal:Q5HSH9
SMR:Q5HSH9 STRING:Q5HSH9 GeneID:3232411 KEGG:cjr:CJE1784
PATRIC:20045378 BioCyc:CJEJ195099:GJC0-1814-MONOMER Uniprot:Q5HSH9
Length = 355
Score = 179 (68.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 71/317 (22%), Positives = 136/317 (42%)
Query: 20 KLADSLKVVNALKDLRYKAEE-AKLIAQLAEMEAI----DYG-LFKRAYRASLDVS-KLL 72
K+ K L+ + KA+E K + + E +A+ + G L K + ++ KL
Sbjct: 31 KMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLE 90
Query: 73 DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCC 132
++ ++ L + PND + I+AG+ G ++ L+ Y R+A+ GY+ +V
Sbjct: 91 EEIKILLLPKDPNDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSE 150
Query: 133 CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSPD 192
GG K + + A+ L E G H + P + + V + +
Sbjct: 151 GSVGGFKEIIMLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIE 210
Query: 193 LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRL 249
++I+ DL + S G+ + A I HIPTGI V + ++ NK A+ L
Sbjct: 211 IEINPNDLKVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVL 270
Query: 250 KAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVL- 308
KA+L + + ++ S ++ + + + E R + P + D + + L ++++
Sbjct: 271 KARLYEMQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQ 330
Query: 309 DGNIKPFIEAHINSRRS 325
DG IE I ++
Sbjct: 331 DGLFDEIIEPLITHHQA 347
>TAIR|locus:2099137 [details] [associations]
symbol:APG3 "AT3G62910" species:3702 "Arabidopsis
thaliana" [GO:0003747 "translation release factor activity"
evidence=IGI;ISS] [GO:0006415 "translational termination"
evidence=IGI;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009658 "chloroplast organization" evidence=IMP;NAS]
[GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP]
[GO:0032544 "plastid translation" evidence=IGI] [GO:0006783 "heme
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0034660 "ncRNA metabolic process"
evidence=RCA] [GO:0042793 "transcription from plastid promoter"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.30.160.20
GO:GO:0009658 GO:GO:0010027 GO:GO:0003747 GO:GO:0032544
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
TIGRFAMs:TIGR00019 OMA:SVMLEIR HSSP:P07012 EMBL:AY090253
EMBL:AY125535 EMBL:AB109893 IPI:IPI00529197 RefSeq:NP_191850.2
UniGene:At.28015 ProteinModelPortal:Q8RX79 SMR:Q8RX79 STRING:Q8RX79
PaxDb:Q8RX79 PRIDE:Q8RX79 EnsemblPlants:AT3G62910.1 GeneID:825466
KEGG:ath:AT3G62910 TAIR:At3g62910 InParanoid:Q8RX79
PhylomeDB:Q8RX79 ProtClustDB:CLSN2690621 Genevestigator:Q8RX79
Uniprot:Q8RX79
Length = 422
Score = 177 (67.4 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 70/313 (22%), Positives = 136/313 (43%)
Query: 13 KSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRASLDVSKL 71
K + + +L + + V KD + E+K++A+ A + E + + + ++ +L
Sbjct: 89 KLAQSMSELDEVVTVFRRFKDCEKQLLESKVLAKEAGDDEDMAEMIGSEINSLTKEIEEL 148
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
Q ++ L P D + ++AG+ G IW L+ MY R++++ ++ +V
Sbjct: 149 EKQLKVLLLPSDPLDARNILLEVRAGTGGDEAAIWTGDLVRMYQRYSERSSWKFSMVSCS 208
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVPLFLE 188
++GG K+ +E + + L E+G H + P H +T A V ++P E
Sbjct: 209 EAEHGGYKTCVMEIKGNRVYSKLKYESGVHRVQRVPQTETQGRVHTST-ATVAIMPEADE 267
Query: 189 TSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALN 247
+ D +L + S G+ + + A + H P+GI + ER NK +A
Sbjct: 268 VEVVIDPKDIELTSARSGGAGGQNVNKVETAIDLFHKPSGIRIFCTEERTQIRNKARAFQ 327
Query: 248 RLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD--VKTGIQLPDFN 305
L+AKL I + + ++ + + E R ++ V D +K L F
Sbjct: 328 LLRAKLYEIKVREQQEKIRNERKSQVGTGARSEKIRTYNYKDSRVTDHRLKMNFALTTF- 386
Query: 306 SVLDGNIKPFIEA 318
LDG ++ ++A
Sbjct: 387 --LDGALEDAVQA 397
>GENEDB_PFALCIPARUM|MAL7P1.20 [details] [associations]
symbol:MAL7P1.20 "peptide chain release factor,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AL844506 GO:GO:0016149 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 RefSeq:XP_001348982.1 HSSP:P07012
ProteinModelPortal:Q8IC21 IntAct:Q8IC21 MINT:MINT-1551615
EnsemblProtists:MAL7P1.20:mRNA GeneID:2655192 KEGG:pfa:MAL7P1.20
EuPathDB:PlasmoDB:PF3D7_0704900 ProtClustDB:CLSZ2434502
Uniprot:Q8IC21
Length = 352
Score = 131 (51.2 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 39/132 (29%), Positives = 67/132 (50%)
Query: 192 DLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKALNR 248
D I+ DL+ + G+ Q++ K A I H PT I+V++ ER NK AL R
Sbjct: 218 DFVINKSDLVIQTMRSGGKGGQNVNKVETAVRILHKPTNISVKASSERTQLLNKRNALKR 277
Query: 249 LKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVL 308
+ KLL + E + + +++ + + + R YV + K+++D +T + D + VL
Sbjct: 278 IYEKLLYLQTEALKNKKYELANKSLTHFGE-QIRNYVLYGNKMIKDTRTNVFSTDIDKVL 336
Query: 309 -DGNIKPFIEAH 319
G I FI+A+
Sbjct: 337 YQGEIDIFIDAY 348
Score = 86 (35.3 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 91 SVTIKAGSNGICPEIWAEQLLNMYVRWA----DKEGYRGRVVDKCCCKNG-GVKSATIEF 145
S+ + +G+ G + L NMY+++ +++ + V+D KN G+K I+
Sbjct: 53 SLILSSGTGGTEACDFCNMLYNMYIKYLCRIKNRKNIKYEVID--ISKNEVGIKKVEIKI 110
Query: 146 EFEYAFGYLSGETGAHCLI-NFP-NGSFPHEATLACVDVVP 184
+ EY+F E G H L+ N P N + VDV+P
Sbjct: 111 DGEYSFYNFVSEKGIHRLVRNSPFNAQNKKMTSFVKVDVIP 151
>UNIPROTKB|Q8IC21 [details] [associations]
symbol:MAL7P1.20 "Peptide chain release factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AL844506 GO:GO:0016149 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 RefSeq:XP_001348982.1 HSSP:P07012
ProteinModelPortal:Q8IC21 IntAct:Q8IC21 MINT:MINT-1551615
EnsemblProtists:MAL7P1.20:mRNA GeneID:2655192 KEGG:pfa:MAL7P1.20
EuPathDB:PlasmoDB:PF3D7_0704900 ProtClustDB:CLSZ2434502
Uniprot:Q8IC21
Length = 352
Score = 131 (51.2 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 39/132 (29%), Positives = 67/132 (50%)
Query: 192 DLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKALNR 248
D I+ DL+ + G+ Q++ K A I H PT I+V++ ER NK AL R
Sbjct: 218 DFVINKSDLVIQTMRSGGKGGQNVNKVETAVRILHKPTNISVKASSERTQLLNKRNALKR 277
Query: 249 LKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVL 308
+ KLL + E + + +++ + + + R YV + K+++D +T + D + VL
Sbjct: 278 IYEKLLYLQTEALKNKKYELANKSLTHFGE-QIRNYVLYGNKMIKDTRTNVFSTDIDKVL 336
Query: 309 -DGNIKPFIEAH 319
G I FI+A+
Sbjct: 337 YQGEIDIFIDAY 348
Score = 86 (35.3 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 91 SVTIKAGSNGICPEIWAEQLLNMYVRWA----DKEGYRGRVVDKCCCKNG-GVKSATIEF 145
S+ + +G+ G + L NMY+++ +++ + V+D KN G+K I+
Sbjct: 53 SLILSSGTGGTEACDFCNMLYNMYIKYLCRIKNRKNIKYEVID--ISKNEVGIKKVEIKI 110
Query: 146 EFEYAFGYLSGETGAHCLI-NFP-NGSFPHEATLACVDVVP 184
+ EY+F E G H L+ N P N + VDV+P
Sbjct: 111 DGEYSFYNFVSEKGIHRLVRNSPFNAQNKKMTSFVKVDVIP 151
>POMBASE|SPAC2F7.17 [details] [associations]
symbol:SPAC2F7.17 "mitochondrial peptide chain release
factor (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=NAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 PomBase:SPAC2F7.17 GO:GO:0005739
EMBL:CU329670 Gene3D:3.30.160.20 GO:GO:0032543 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
PIR:S58161 RefSeq:NP_592987.1 ProteinModelPortal:Q09691
STRING:Q09691 EnsemblFungi:SPAC2F7.17.1 GeneID:2541478
KEGG:spo:SPAC2F7.17 OMA:QEANSIL OrthoDB:EOG4JWZP5 NextBio:20802577
Uniprot:Q09691
Length = 396
Score = 171 (65.3 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 75/319 (23%), Positives = 135/319 (42%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA---IDYGLFKRAYRASLDV 68
T ++ ++A +V NA + +E+ + Q+ E+ + S +
Sbjct: 63 TNDTDLAKRIARLRRVHNAYSKFKSLSEQISDLKQMEAQESDAEVKMMAVTEINEISNKI 122
Query: 69 SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVV 128
K ++ E + L + + A + I+ G G I+A +L+ MY ++A+ +G+ + +
Sbjct: 123 PKSIEDLENTLLPQADSYALPALIEIRPGVGGTEAAIFANELVEMYFQYANFKGWNCKFI 182
Query: 129 DKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVP 184
K + + A E E A+G+L E G H + P H +T A V V+P
Sbjct: 183 SKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVHRVQRTPATETKGRVHTST-ASVIVLP 241
Query: 185 -LFLETSPDLQISDEDLL--FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ + S L S E + S G+ + + A + HIPTGI V R+ N
Sbjct: 242 QVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRLTHIPTGITVSMQDSRSQHQN 301
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQR-ETRRYVSHPYKLVQDVKTGIQ 300
K KA L ++L + + + +KR+ V R E R + V D + G+
Sbjct: 302 KEKAFLVLNSRLAALNAAKE-NEAERLKRKNQVTSSDRSEKLRTYNFNQNRVTDHRIGLS 360
Query: 301 LPDFNSVLDGNIK--PFIE 317
+ D ++ + G K F+E
Sbjct: 361 MHDLSTFMQGEEKFDEFLE 379
>FB|FBgn0032486 [details] [associations]
symbol:CG5705 species:7227 "Drosophila melanogaster"
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=ISS]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE014134 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
KO:K02835 GeneTree:ENSGT00390000011879 HSSP:P07012 EMBL:AY061245
RefSeq:NP_609617.1 UniGene:Dm.3674 SMR:Q9VK20 IntAct:Q9VK20
MINT:MINT-821247 STRING:Q9VK20 EnsemblMetazoa:FBtr0080444
GeneID:34720 KEGG:dme:Dmel_CG5705 UCSC:CG5705-RA
FlyBase:FBgn0032486 InParanoid:Q9VK20 OMA:AEKDEDM OrthoDB:EOG46WWQX
GenomeRNAi:34720 NextBio:789875 Uniprot:Q9VK20
Length = 392
Score = 158 (60.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 71/286 (24%), Positives = 125/286 (43%)
Query: 20 KLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRASLDVSKLLDQYEMS 78
+LA VV+AL+ R + AE + L + +D+ DQ +
Sbjct: 58 RLAQLEGVVSALEQRRVLERHITSAKDMEAEKDEDMRELMREENEVYVDLLGKQDQALLQ 117
Query: 79 KLLRGPNDVEGASVT--IKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG 136
+LL +D E ++ + AG+ G ++A++L MY + + G+ G
Sbjct: 118 ELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQELYEMYTGYFEHMGWEWEEFASEGTDIG 177
Query: 137 GVKSATIEFEFEYAFGYLSGETGAHCLINFP----NGSFPHEATLACVDVVPLFLETSPD 192
G++ A++ E AF +L E G H + P +G H +T A + V+P +
Sbjct: 178 GLRHASLMVSGEDAFRWLRYEAGVHRVQRVPATEKSGRM-HTST-ASITVIPRPADIQ-- 233
Query: 193 LQISDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRL 249
+ I+++DL + G + + A I H+PTG+AV++ ER+ N+ A+ RL
Sbjct: 234 VHIAEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRL 293
Query: 250 KAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVS-HPYKLVQD 294
+++L+ +Q + +V K A Q R Y VQD
Sbjct: 294 RSRLV----QQQLESVEASKM-ATKKAQQGSLNRNEKIRTYNFVQD 334
>SGD|S000003111 [details] [associations]
symbol:MRF1 "Mitochondrial translation release factor"
species:4932 "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA;IMP] [GO:0070126 "mitochondrial translational
termination" evidence=IGI;IMP] [GO:0006415 "translational
termination" evidence=IEA;IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=IMP]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 SGD:S000003111 InterPro:IPR014720
GO:GO:0005739 EMBL:BK006941 Gene3D:3.30.160.20 GO:GO:0003747
EMBL:X99960 GO:GO:0016149 RefSeq:NP_011376.3 GeneID:852738
KEGG:sce:YGL139W EMBL:X60381 GO:GO:0070126 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 GeneTree:ENSGT00390000011879
OrthoDB:EOG4JWZP5 EMBL:Z72665 PIR:S28602 RefSeq:NP_011372.3
ProteinModelPortal:P30775 SMR:P30775 DIP:DIP-2626N IntAct:P30775
MINT:MINT-427494 STRING:P30775 PaxDb:P30775 EnsemblFungi:YGL143C
GeneID:852734 KEGG:sce:YGL143C CYGD:YGL143c OMA:PPHPFAD
NextBio:972135 Genevestigator:P30775 GermOnline:YGL143C
Uniprot:P30775
Length = 413
Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 70/303 (23%), Positives = 128/303 (42%)
Query: 34 LRYKAEEAKLIAQLAEMEAIDYGLFKRA---YRASLDVSKLLDQYEMSKLLRG-PNDVEG 89
+ YK E+ + L EM D L A Y + + ++KLL P +
Sbjct: 96 IEYK-EKLNELKSLQEMIVSDPSLRAEAEQEYAELVPQYETTSSRLVNKLLPPHPFADKP 154
Query: 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG-GVKSATIEFEFE 148
+ + ++ G GI I+ + LL+MY+ +A+ ++ R++ K ++G G+ A + E
Sbjct: 155 SLLELRPGVGGIEAMIFTQNLLDMYIGYANYRKWKYRIISKNENESGSGIIDAILSIEEA 214
Query: 149 YAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVPLFLETSPDLQISDE------- 198
++ L E G H + P+ H +T A V + + E++ + +
Sbjct: 215 GSYDRLRFEAGVHRVQRIPSTETKGRTHTSTAAVVVLPQIGDESAKSIDAYERTFKPGEI 274
Query: 199 --DLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVI 256
D++ +S G+ + A + HIP+GI V ER+ NK KA L+A+L
Sbjct: 275 RVDIMRASGK-GGQHVNTTDSAVRLTHIPSGIVVSMQDERSQHKNKAKAFTILRARLAEK 333
Query: 257 VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGN-IKPF 315
+ ++ + + + + R + P + D + G L D VL G +
Sbjct: 334 ERLEKEEKERKARKSQVSSTNRSDKIRTYNFPQNRITDHRCGFTLLDLPGVLSGERLDEV 393
Query: 316 IEA 318
IEA
Sbjct: 394 IEA 396
>UNIPROTKB|F1NW58 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149 OMA:YSMKLEE
GeneTree:ENSGT00390000011879 EMBL:AADN02025387 EMBL:AADN02025388
IPI:IPI00593690 Ensembl:ENSGALT00000022140 Uniprot:F1NW58
Length = 367
Score = 143 (55.4 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 56/270 (20%), Positives = 111/270 (41%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+ L+D + ++ + +A E E + + ++++L Q + + D
Sbjct: 53 IQRLRDKERELQDTRELALQDESEDLRKLAEREIVSCEEEIAELKHQIVLLLIPSEETDN 112
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
+ + AG G ++ ++ +MY R+A + ++ +++ + GG++ A
Sbjct: 113 SDLVMEVTAGVGGQEAMLFTSEIFDMYRRYAAYKKWKFEILEYFPSEIGGLRHAVASIAG 172
Query: 148 EYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSL 207
A+ Y+ E G H + P + + V L T +L+I+ +DL +
Sbjct: 173 LDAYKYMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEMELKINPKDLRIETKRA 232
Query: 208 PG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSN 264
G + + A I HIPTG+ + ER+ NK KA+ L AKL I E+
Sbjct: 233 SGAGGQHVNTTDSAVRIVHIPTGVTSECQQERSQIRNKEKAMQMLCAKLYNIKLEEENKK 292
Query: 265 VSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
+ ++ I + E R + P + D
Sbjct: 293 RNSARKIQIGTKGRSEKIRTYNFPQDRITD 322
>UNIPROTKB|E1BXF8 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016149 "translation release factor activity, codon
specific" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
OMA:VWLFRHP EMBL:AADN02005497 IPI:IPI00591431
Ensembl:ENSGALT00000027399 Uniprot:E1BXF8
Length = 417
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 69/310 (22%), Positives = 133/310 (42%)
Query: 22 ADSLKVVNALKDLRY-KAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY----- 75
AD V A +++R ++E +L E+++ D K+ +L+ + LD+
Sbjct: 80 ADLSPVATAFQEIREAESELQELETMCRELDSRDE---KQLLELALEEKETLDKKINTLC 136
Query: 76 -EMSKLL--RGPNDVEGASVTIKAG--SNG-ICPEIWAEQLLNMYVRWADKEGYRGRVVD 129
++ +LL + D + + AG + G IC + + +++ MY +AD + + +++
Sbjct: 137 RKLFQLLVPKEKYDKSHVILEVTAGRTTGGDICQQ-FTKEMFEMYQNYADYKCWTFDILN 195
Query: 130 KCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP------HEATLACVDVV 183
+ GG+ A + + +L E G H + P H T++ + V+
Sbjct: 196 YVPAEIGGLHHAAAHISGDDVYRHLKYEGGTHRVQRIPETGLSSRMQRIHTGTMSVI-VL 254
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E D+++ +DL F + G+ + A I H+PTG+ V+ ER+
Sbjct: 255 PQPEEV--DVKVDPKDLRIDTFRAKGAGGQHVNKTDSAVRIVHLPTGVVVECQQERSQQM 312
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKL + E+ +S ++ + Q E R + V D +
Sbjct: 313 NKEIALRTLRAKLYQQIIEKQLSQEQSARKLQLGTRAQSERIRTYNFTQDRVTDHRISYD 372
Query: 301 LPDFNSVLDG 310
+ +L G
Sbjct: 373 ARNIKEILSG 382
>CGD|CAL0003702 [details] [associations]
symbol:orf19.1303 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=IEA] [GO:0070126 "mitochondrial
translational termination" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 CGD:CAL0003702 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0016149 EMBL:AACQ01000138
HOGENOM:HOG000074815 KO:K02835 RefSeq:XP_709944.1
ProteinModelPortal:Q59TR5 STRING:Q59TR5 GeneID:3645356
KEGG:cal:CaO19.1303 Uniprot:Q59TR5
Length = 394
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 52/258 (20%), Positives = 113/258 (43%)
Query: 68 VSKLLDQYEMSKLLRGPNDV--EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ KL+ + + LR P +G + ++ G G ++ LLNMY+ +A + ++
Sbjct: 128 IEKLVSELRVK--LRPPVKYADKGCIIELRPGVGGNEASLFTGDLLNMYMNFASEMNWKY 185
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDV 182
+++ + +G + A + + ++ + E+G H + P H +T A V V
Sbjct: 186 KIISEGKNSSGFINEAILSIDTLGSYDIMRHESGVHRVQRIPETETKGRVHTSTAAVV-V 244
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLP----------GERQSIAKPAACIQHIPTGIAVQS 232
+P E + + + D++ +F+ + G+ + A + HIPTG+ V
Sbjct: 245 LPKLSEGN-ESSLKDDERVFAPGEVRIDTMRAGGKGGQHVNTTDSAVRLLHIPTGMIVIQ 303
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK KA L+++L E+ + ++ + + + + + + ++ V
Sbjct: 304 QDERSQPLNKAKAFAILRSRLAQKEQEEEMLKQKKLRTDQVSSTDRSDKIKTYNYKENRV 363
Query: 293 QDVKTGIQLPDFNSVLDG 310
D + + D VL+G
Sbjct: 364 TDHRINYSMHDLEGVLEG 381
>UNIPROTKB|F1MCM1 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 IPI:IPI00714066 UniGene:Bt.20306
GeneTree:ENSGT00390000011879 OMA:VEIHAND EMBL:DAAA02027199
Ensembl:ENSBTAT00000012219 Uniprot:F1MCM1
Length = 380
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 52/247 (21%), Positives = 102/247 (41%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++++L Q + + D + + AG G ++ ++ +MY ++A + +
Sbjct: 106 EIAQLKHQIILLLVPSEETDKNDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLF 186
++ + GG++ A+ A+ ++ E G H + P + + V L
Sbjct: 166 TLEYFPSEIGGLRHASASIGGSEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILP 225
Query: 187 LETSPDLQISDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKM 243
T +L I+ +DL + G + + A I H+PTGI + ER+ NK
Sbjct: 226 QPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIVSECQQERSQLKNKE 285
Query: 244 KALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPD 303
A+ +L+AKL + E+ S ++ I + E R + P V D + L D
Sbjct: 286 MAMKKLRAKLYSLQLEEETSKRYNARKIQIGTKGRSEKIRTYNFPQNRVTDHRINKSLHD 345
Query: 304 FNSVLDG 310
+ + G
Sbjct: 346 LETFMQG 352
>UNIPROTKB|Q2KI15 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 EMBL:BC112806 IPI:IPI00714066 RefSeq:NP_001039843.1
UniGene:Bt.20306 ProteinModelPortal:Q2KI15 STRING:Q2KI15
PRIDE:Q2KI15 GeneID:534354 KEGG:bta:534354 CTD:54516 eggNOG:COG0216
HOGENOM:HOG000074815 HOVERGEN:HBG017071 InParanoid:Q2KI15 KO:K02835
OrthoDB:EOG49W2G0 NextBio:20876372 Uniprot:Q2KI15
Length = 380
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 52/247 (21%), Positives = 102/247 (41%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++++L Q + + D + + AG G ++ ++ +MY ++A + +
Sbjct: 106 EIAQLKHQIILLLVPSEETDKNDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLF 186
++ + GG++ A+ A+ ++ E G H + P + + V L
Sbjct: 166 TLEYFPSEIGGLRHASASIGGSEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILP 225
Query: 187 LETSPDLQISDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKM 243
T +L I+ +DL + G + + A I H+PTGI + ER+ NK
Sbjct: 226 QPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIVSECQQERSQLKNKE 285
Query: 244 KALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPD 303
A+ +L+AKL + E+ S ++ I + E R + P V D + L D
Sbjct: 286 MAMKKLRAKLYSLQLEEETSKRYNARKIQIGTKGRSEKIRTYNFPQNRVTDHRINKSLHD 345
Query: 304 FNSVLDG 310
+ + G
Sbjct: 346 LETFMQG 352
>UNIPROTKB|Q9UGC7 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9606 "Homo sapiens" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005739 EMBL:CH471051 Gene3D:3.30.160.20
GO:GO:0016149 EMBL:AL080276 CTD:54516 eggNOG:COG0216
HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0 EMBL:AK027684
EMBL:AK095240 EMBL:AK290662 EMBL:BC011873 EMBL:BC014428
EMBL:BC105973 IPI:IPI00295737 IPI:IPI00477207 IPI:IPI00513970
IPI:IPI00890825 RefSeq:NP_001107656.1 RefSeq:NP_061914.3
UniGene:Hs.225836 HSSP:Q9X183 ProteinModelPortal:Q9UGC7 SMR:Q9UGC7
STRING:Q9UGC7 PhosphoSite:Q9UGC7 DMDM:74753314 PRIDE:Q9UGC7
DNASU:54516 Ensembl:ENST00000367230 Ensembl:ENST00000367231
Ensembl:ENST00000367233 Ensembl:ENST00000414771 GeneID:54516
KEGG:hsa:54516 UCSC:uc003qpi.4 UCSC:uc003qpk.4 UCSC:uc003qpl.4
GeneCards:GC06M153308 H-InvDB:HIX0006308 HGNC:HGNC:21051
HPA:HPA036367 MIM:613542 neXtProt:NX_Q9UGC7 PharmGKB:PA134870441
InParanoid:Q9UGC7 OMA:YSMKLEE PhylomeDB:Q9UGC7 GenomeRNAi:54516
NextBio:56904 ArrayExpress:Q9UGC7 Bgee:Q9UGC7 CleanEx:HS_MTRF1L
Genevestigator:Q9UGC7 Uniprot:Q9UGC7
Length = 380
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 50/248 (20%), Positives = 105/248 (42%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++++L Q + + D + + AG G ++ ++ +MY ++A + +
Sbjct: 106 EITQLKHQIILLLVPSEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLF 186
++ + GG++ A+ A+ ++ E G H + P + + V L
Sbjct: 166 TLEYFPSELGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILP 225
Query: 187 LETSPDLQISDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKM 243
T +L I+ +DL + G + + A I H+PTG+ + ER+ NK
Sbjct: 226 QPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKE 285
Query: 244 KALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPD 303
A+ +L+AKL + E+ ++ ++ I + + E R + P V D + L D
Sbjct: 286 LAMTKLRAKLYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHD 345
Query: 304 FNSVLDGN 311
+ + G+
Sbjct: 346 LETFMQGD 353
>ZFIN|ZDB-GENE-030131-8198 [details] [associations]
symbol:mtrf1l "mitochondrial translational release
factor 1-like" species:7955 "Danio rerio" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 ZFIN:ZDB-GENE-030131-8198 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
EMBL:CU651596 IPI:IPI00802409 Ensembl:ENSDART00000084094
Uniprot:F1QA94
Length = 339
Score = 135 (52.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 71/298 (23%), Positives = 123/298 (41%)
Query: 20 KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK 79
KL K + ++DL K + +L+ +LAE E K A A D+ L + +S
Sbjct: 29 KLEVKQKEMEDMQDL-LKDNDPELL-ELAETE-------KEAVLA--DIQDLRQKI-LSL 76
Query: 80 LL-RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGV 138
L+ +D+ + + AG G ++ ++ MY +A G+ V++ + GGV
Sbjct: 77 LIPEEESDMSELVLEVSAGVGGQEAMLFTAEIFEMYQNYAAFNGWSFDVLEANASELGGV 136
Query: 139 KSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVPLFLETSPDLQI 195
+ A+ ++ L E G H + P H +T+ V ++P E S I
Sbjct: 137 RHASASVSGPLSYKKLKFEAGVHRVQRVPKTESKGRTHTSTMT-VAILPQPTEIS--FTI 193
Query: 196 SDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAK 252
+ +DL + G + + A I H+PTG + ER+ NK A+ L+AK
Sbjct: 194 NPKDLKIETKRASGAGGQHVNTTDSAVRITHLPTGTVAECQQERSQIKNKDTAMKLLRAK 253
Query: 253 LLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310
L E+ S ++ I + E R + + D + G + D + L G
Sbjct: 254 LYSARLEEETSRRYQARKLQIGTRGRSEKIRTYNFQQDRITDHRIGKTVHDVHGFLQG 311
>RGD|1598312 [details] [associations]
symbol:Mtrf1l "mitochondrial translational release factor
1-like" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 RGD:1598312 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 CTD:54516 eggNOG:COG0216
HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0
HSSP:Q9X183 GeneTree:ENSGT00390000011879 OMA:GEAGGYK EMBL:BC097970
IPI:IPI00365406 RefSeq:NP_001020894.1 UniGene:Rn.205194
ProteinModelPortal:Q4V7E5 STRING:Q4V7E5 PRIDE:Q4V7E5
Ensembl:ENSRNOT00000025398 GeneID:361473 KEGG:rno:361473
UCSC:RGD:1598312 InParanoid:Q4V7E5 NextBio:676427
Genevestigator:Q4V7E5 Uniprot:Q4V7E5
Length = 373
Score = 134 (52.2 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 50/243 (20%), Positives = 104/243 (42%)
Query: 74 QYEMSKLLRGPNDVEGASVTIK--AGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
++ + LL D++G+ + ++ AG G ++ ++ +MY ++A + + ++
Sbjct: 104 KHRIISLLVPSEDMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYF 163
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSP 191
+ GG++ A+ A+ ++ E G H + P + + V L T
Sbjct: 164 PSELGGLRHASASIGGPEAYRHMKFEGGVHRVQRVPKTERQGRIHTSTMTVAILPQPTEI 223
Query: 192 DLQISDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNR 248
L I+ +DL + G + + A I H+PTGI + ER+ N+ A+ +
Sbjct: 224 KLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKK 283
Query: 249 LKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVL 308
L+A+L + E+ + ++ + + E R + P V D + L D S +
Sbjct: 284 LRARLYSMRLEEETAKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFM 343
Query: 309 DGN 311
G+
Sbjct: 344 QGD 346
>UNIPROTKB|F1S7X5 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
OMA:GEAGGYK EMBL:CU633523 Ensembl:ENSSSCT00000004505 Uniprot:F1S7X5
Length = 380
Score = 132 (51.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 46/220 (20%), Positives = 93/220 (42%)
Query: 94 IKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGY 153
+ AG G ++ ++ +MY ++A + + +++ + GG++ A+ A+ +
Sbjct: 133 VTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFEILEYFPSEIGGLRHASASIGGSEAYKH 192
Query: 154 LSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPG---E 210
+ E G H + P + + V L T +L I+ +DL + G +
Sbjct: 193 MKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQ 252
Query: 211 RQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKR 270
+ A I H+PTG+ + ER+ N+ A+ +L+AKL + E+ S ++
Sbjct: 253 HVNTTDSAVRIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSLHLEEETSKRYNARK 312
Query: 271 EAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310
+ + E R + P V D + L D + + G
Sbjct: 313 VQVGTKGRSEKIRTYNFPQNRVTDHRINKSLYDLGTFMQG 352
>WB|WBGene00020993 [details] [associations]
symbol:W03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0003747 "translation release factor activity" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
GeneTree:ENSGT00390000011879 EMBL:FO080652 PIR:T15102
RefSeq:NP_500737.1 ProteinModelPortal:O44568 SMR:O44568
STRING:O44568 PaxDb:O44568 EnsemblMetazoa:W03F8.3.1
EnsemblMetazoa:W03F8.3.2 GeneID:177294 KEGG:cel:CELE_W03F8.3
UCSC:W03F8.3 CTD:177294 WormBase:W03F8.3 InParanoid:O44568
OMA:QCQAGNA NextBio:896154 Uniprot:O44568
Length = 389
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 62/253 (24%), Positives = 108/253 (42%)
Query: 8 WDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRAS 65
W+ +K + K++D ++ L+ + +E + + +LAE+ E+I+ L +
Sbjct: 67 WESISKQS---AKVSDGRSELSQLRTIINDPKETEEMRKLAEVDVESIEENLETELQELA 123
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L + +SK + + G+ G ++ +LL+MY + A ++
Sbjct: 124 VKIVPLNNLDVLSK----------CQIELSCGAGGQEAMLFTGELLDMYQKLAAVNSWKW 173
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP-NGSFPHEATLACVDVVP 184
+ GGV+SA I E + + E G H + P N S H +T A + V+P
Sbjct: 174 DPLQVDNVPLGGVRSALIAVSGEKVYAKMRFEAGVHRVQRVPVNDSRMHTST-ASISVLP 232
Query: 185 LFLETS---PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
E S P + E + S P G+ + A + H TGIAV + ER N
Sbjct: 233 EPEEVSVVVPSDSVKIEAMRASGPG--GQNVNKRSTAVRMTHKETGIAVHCMDERFQHLN 290
Query: 242 KMKALNRLKAKLL 254
A RL A L+
Sbjct: 291 IQIAYKRLAAILM 303
>MGI|MGI:1918830 [details] [associations]
symbol:Mtrf1l "mitochondrial translational release factor
1-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003747 "translation release
factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0006415 "translational termination"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 MGI:MGI:1918830 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 CTD:54516 eggNOG:COG0216 HOGENOM:HOG000074815
HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0 HSSP:Q9X183
EMBL:AK036424 EMBL:AK078897 IPI:IPI00222491 RefSeq:NP_780583.1
UniGene:Mm.55082 ProteinModelPortal:Q8BJU9 SMR:Q8BJU9 STRING:Q8BJU9
PhosphoSite:Q8BJU9 PRIDE:Q8BJU9 Ensembl:ENSMUST00000019908
GeneID:108853 KEGG:mmu:108853 UCSC:uc007egi.1
GeneTree:ENSGT00390000011879 InParanoid:Q8BJU9 OMA:GEAGGYK
NextBio:361387 Bgee:Q8BJU9 Genevestigator:Q8BJU9 Uniprot:Q8BJU9
Length = 373
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 49/243 (20%), Positives = 105/243 (43%)
Query: 74 QYEMSKLLRGPNDVEGASVTIK--AGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
++++ LL +++G+ + ++ AG G ++ ++ +MY ++A + + ++
Sbjct: 104 KHQIISLLVPSEEMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYF 163
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSP 191
+ GG++ A+ A+ ++ E G H + P + + V L T
Sbjct: 164 PSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEI 223
Query: 192 DLQISDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNR 248
L I+ +DL + G + + A I H+PTGI + ER+ N+ A+ +
Sbjct: 224 KLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKK 283
Query: 249 LKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVL 308
L+A+L + E+ + ++ + + E R + P V D + L D S +
Sbjct: 284 LRARLYSMHLEEETAKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFM 343
Query: 309 DGN 311
G+
Sbjct: 344 QGD 346
>UNIPROTKB|E2QTM1 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
Ensembl:ENSCAFT00000000841 Uniprot:E2QTM1
Length = 381
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 46/220 (20%), Positives = 92/220 (41%)
Query: 94 IKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGY 153
+ AG G ++ ++ +MY ++A + + ++ + GG++ A+ A+ +
Sbjct: 134 VTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSEIGGLRHASASIGGLEAYKH 193
Query: 154 LSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPG---E 210
+ E G H + P + + V L T +L I+ +DL + G +
Sbjct: 194 MKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIHTKRASGAGGQ 253
Query: 211 RQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKR 270
+ A I H+PTG+ + ER+ N+ A+ +L+AKL + E+ S ++
Sbjct: 254 HVNTTDSAVRIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMYLEEETSKRYSARK 313
Query: 271 EAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310
+ + E R + P V D + L D + + G
Sbjct: 314 IQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQG 353
>ASPGD|ASPL0000035902 [details] [associations]
symbol:AN3462 species:162425 "Emericella nidulans"
[GO:0070126 "mitochondrial translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:BN001306 GO:GO:0016149 HOGENOM:HOG000074815
OMA:QCQAGNA EnsemblFungi:CADANIAT00009571 Uniprot:C8VHA3
Length = 418
Score = 87 (35.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 94 IKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVV--DKCCCKNGGVKSATIEFEFEYAF 151
I+ G+ G I+A +LL MYV + +G R ++ ++ + + A +E E E A+
Sbjct: 148 IRPGAGGDEASIFAFELLQMYVAFCAHQGLRSTLMKLERGDNRADALTEAVLEVEAEGAY 207
Query: 152 GYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPS 206
L E+G H + P + V V + L + PD D F P+
Sbjct: 208 DLLRTESGVHRVQRVPTTEAKGRTHTSAVSV--MVLPSFPDTGGGDGAFNFDDPN 260
Score = 85 (35.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/106 (26%), Positives = 51/106 (48%)
Query: 209 GERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCI 268
G+ + + A + H+PTGI V R+ AN+ KA L+AKL E + +
Sbjct: 282 GQHVNKTESAIRLTHMPTGIVVSMQDSRSQHANRKKAWQILRAKLAEARQEAREQELVEL 341
Query: 269 KREAIVNIWQR----ETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310
+R A+ I + + R Y ++ D ++G + + ++VL+G
Sbjct: 342 RRGAMGGIGRMGRGDKVRTY-NYGQSRCTDHRSGFTVHNLDNVLEG 386
>UNIPROTKB|F6V8L3 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0016149 GeneTree:ENSGT00390000011879
Ensembl:ENSCAFT00000000841 EMBL:AAEX03000279 OMA:DCTISIS
Uniprot:F6V8L3
Length = 238
Score = 122 (48.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 43/209 (20%), Positives = 88/209 (42%)
Query: 105 IWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI 164
++ ++ +MY ++A + + ++ + GG++ A+ A+ ++ E G H +
Sbjct: 2 LFTSEMFDMYQQYAAFKRWHFETLEYFPSEIGGLRHASASIGGLEAYKHMKFEGGVHRVQ 61
Query: 165 NFPNGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPG---ERQSIAKPAACI 221
P + + V L T +L I+ +DL + G + + A I
Sbjct: 62 RVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIHTKRASGAGGQHVNTTDSAVRI 121
Query: 222 QHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRET 281
H+PTG+ + ER+ N+ A+ +L+AKL + E+ S ++ + + E
Sbjct: 122 VHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMYLEEETSKRYSARKIQVGTKGRSEK 181
Query: 282 RRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310
R + P V D + L D + + G
Sbjct: 182 IRTYNFPQNRVTDHRINKSLHDLETFMQG 210
>UNIPROTKB|Q3MHI7 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815
HOVERGEN:HBG017071 KO:K02835 GeneTree:ENSGT00390000011879
EMBL:BC105224 IPI:IPI00698094 RefSeq:NP_001030185.1
UniGene:Bt.37767 HSSP:P0A7I0 ProteinModelPortal:Q3MHI7
STRING:Q3MHI7 PRIDE:Q3MHI7 Ensembl:ENSBTAT00000016261 GeneID:504754
KEGG:bta:504754 CTD:9617 InParanoid:Q3MHI7 OMA:VWLFRHP
OrthoDB:EOG48KRBQ NextBio:20866812 Uniprot:Q3MHI7
Length = 447
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 49/198 (24%), Positives = 87/198 (43%)
Query: 85 NDVEGASVTIKAGSNG-ICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATI 143
NDV VT + G IC + + ++ +MY ++ + +R +++ GG+ A
Sbjct: 185 NDVI-LEVTSGRTTGGDICQQ-FTREIFDMYQNYSSYKHWRFELLNYTPADYGGLHHAAA 242
Query: 144 EFEFEYAFGYLSGETGAHCLINFPNGSFP------HEATLACVDVVPLFLETSPDLQISD 197
+ + +L E G H + P H T++ + V+P E D+++
Sbjct: 243 RISGDNVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVI-VLPHPDEV--DVKVDP 299
Query: 198 EDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLL 254
+DL F + G+ + A + HIPTG+ V+ ER+ NK AL L+A+L
Sbjct: 300 KDLRIDTFRAKGAGGQHVNTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLY 359
Query: 255 VIVGEQGVSNVSCIKREA 272
+Q + C +R A
Sbjct: 360 ----QQIIEKDKCQQRSA 373
>UNIPROTKB|E2RAT2 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP EMBL:AAEX03013173
RefSeq:XP_848713.1 ProteinModelPortal:E2RAT2
Ensembl:ENSCAFT00000007724 GeneID:485465 KEGG:cfa:485465
NextBio:20859471 Uniprot:E2RAT2
Length = 444
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 44/179 (24%), Positives = 80/179 (44%)
Query: 85 NDVEGASVTIKAGSNG-ICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATI 143
NDV VT + G IC + + ++ +MY ++ + ++ +++ GG+ A
Sbjct: 182 NDVI-IEVTSGRTTGGDICQQ-FTREIFDMYQNYSSYKNWKFELLNYTPADYGGLHHAAA 239
Query: 144 EFEFEYAFGYLSGETGAHCLINFPNGSFP------HEATLACVDVVPLFLETSPDLQISD 197
+ + +L E G H + P H T++ + V+P E D+++
Sbjct: 240 RISGDNVYKHLKYEGGVHRVQRIPEVGLSARMQRIHTGTMSVI-VLPQPDEV--DVKVDP 296
Query: 198 EDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKL 253
+DL F + G+ + A + HIPTG+ V+ ER+ NK AL L+A+L
Sbjct: 297 KDLRIDTFRAKGAGGQHVNTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARL 355
>MGI|MGI:2384815 [details] [associations]
symbol:Mtrf1 "mitochondrial translational release factor 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006415 "translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
MGI:MGI:2384815 GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP OrthoDB:EOG48KRBQ
EMBL:AK043981 EMBL:BC028898 IPI:IPI00169629 RefSeq:NP_666072.3
UniGene:Mm.35306 ProteinModelPortal:Q8K126 SMR:Q8K126 STRING:Q8K126
PhosphoSite:Q8K126 PRIDE:Q8K126 Ensembl:ENSMUST00000022600
GeneID:211253 KEGG:mmu:211253 UCSC:uc007usw.1 InParanoid:Q8K126
NextBio:373184 Bgee:Q8K126 CleanEx:MM_MTRF1 Genevestigator:Q8K126
GermOnline:ENSMUSG00000022022 Uniprot:Q8K126
Length = 446
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 63/307 (20%), Positives = 128/307 (41%)
Query: 17 VLVKLADSLKVVNALKDL--RYKAEEAKLIAQLA--EMEAIDYGLFKRAYRASLDVSKLL 72
V ++ ++ + + L+ L ++ K + +L E + ID + R Y L+
Sbjct: 120 VYQEIQEAEQAIEELESLCKSLNKQDEKQLQELVSEERQIIDQKIH-RLYSELLERLVPK 178
Query: 73 DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCC 132
++Y+ S ++ +V T G + IC + + ++ +MY ++ + ++ +++
Sbjct: 179 EKYDWSDVIL---EVTSGRTT---GGD-ICQQ-FTREIFDMYQNYSYYKHWKFELLNYTP 230
Query: 133 CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP------HEATLACVDVVPLF 186
GG+ A + + +L E G H + P H T++ + V+P
Sbjct: 231 ADYGGLHHAAARISGDSVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVI-VLPQP 289
Query: 187 LETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKM 243
E D+++ +DL F + G+ + A + HIPTG+ V+ ER+ NK
Sbjct: 290 DEV--DVKVDPKDLRVDTFRARGAGGQHVNTTDSAVRLVHIPTGLVVECQQERSQLKNKE 347
Query: 244 KALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPD 303
AL L+A+L + E+ ++ + Q E R + V D + ++ D
Sbjct: 348 IALRVLRARLYQQIIEKDRCQQQNARKLQVGTRAQSERIRTYNFTQDRVTDHRIAYEVRD 407
Query: 304 FNSVLDG 310
L G
Sbjct: 408 IKEFLRG 414
>ZFIN|ZDB-GENE-050220-8 [details] [associations]
symbol:zgc:113104 "zgc:113104" species:7955 "Danio
rerio" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 InterPro:IPR014720 ZFIN:ZDB-GENE-050220-8
GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149 HOGENOM:HOG000074815
KO:K02835 EMBL:BC090173 IPI:IPI00484442 RefSeq:NP_001012512.1
UniGene:Dr.77520 ProteinModelPortal:Q5EB09 GeneID:503530
KEGG:dre:503530 InParanoid:Q5EB09 NextBio:20866191 Uniprot:Q5EB09
Length = 235
Score = 110 (43.8 bits), Expect = 0.00074, P = 0.00074
Identities = 48/211 (22%), Positives = 84/211 (39%)
Query: 110 LLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG 169
+ +MY +A + + + + + GG+ A++ E F +L E G H + P
Sbjct: 1 MFDMYQGFASYKNWDFELFNYTPAEYGGLHHASVRVSGECVFRWLKFEGGTHRVQRIPEV 60
Query: 170 SFP------HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAAC 220
H T+ + V+P E D+ I+ +DL F S G+ + A
Sbjct: 61 GLSSRMQRIHTGTMTVI-VLPQMEEV--DIDIAPKDLRIDTFRSRGAGGQHVNTTDSAVR 117
Query: 221 IQHIPTGIAVQSLGERNHFANKMKALNRLKAKL-LVIVGEQGVSNVSCIKREAIVNIWQR 279
+ H+PTG + R+ N+ AL L+A+L ++G+Q +R + Q
Sbjct: 118 LVHLPTGTVSECQQFRSQLKNRETALRVLRARLHQCMMGQQR-EQTHTARRLQVGTRAQS 176
Query: 280 ETRRYVSHPYKLVQDVKTGIQLPDFNSVLDG 310
E R + V D + G D + G
Sbjct: 177 ERIRTYNFTQDRVTDHRIGFVTRDIKEFMRG 207
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 329 329 0.00089 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 608 (65 KB)
Total size of DFA: 228 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.42u 0.13s 25.55t Elapsed: 00:00:01
Total cpu time: 25.43u 0.13s 25.56t Elapsed: 00:00:01
Start: Sat May 11 09:22:10 2013 End: Sat May 11 09:22:11 2013