BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020243
(329 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297739884|emb|CBI30066.3| unnamed protein product [Vitis vinifera]
Length = 414
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/328 (67%), Positives = 260/328 (79%), Gaps = 1/328 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+R YNLWDD TKSNE+L KLADS KVV+ LKDL YKAEEAKLI QL EM+AI++GLF++
Sbjct: 84 MIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLFEQ 143
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVSK L QYEMSKLLRG D+EGA +TIKAG GI EIWAEQLL+MY +WA+K
Sbjct: 144 AYNASVDVSKFLYQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKWAEK 203
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG-SFPHEATLAC 179
+GY+GRVV+K KNGG+KSATIEFE EY +GYLSGE G H +I + S HE A
Sbjct: 204 QGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILHETGSAV 263
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VDV+PLFLET+PDLQI D DL SSPS G Q A CIQHIPTGI+VQS GER+HF
Sbjct: 264 VDVIPLFLETAPDLQIDDGDLRISSPSCHGVEQGRTGHAVCIQHIPTGISVQSSGERSHF 323
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANKM+ALNRLKAKL+V EQG+ V IKREAI ++W++ETRRYV HP KLVQDVKT I
Sbjct: 324 ANKMRALNRLKAKLVVTAMEQGIPEVGGIKREAIADMWKQETRRYVFHPNKLVQDVKTDI 383
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
QLPD NSVLDGNI+P I A+I+ R++SD
Sbjct: 384 QLPDLNSVLDGNIEPLIGANISMRQASD 411
>gi|225441347|ref|XP_002274658.1| PREDICTED: peptide chain release factor 2-like [Vitis vinifera]
Length = 417
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/328 (67%), Positives = 260/328 (79%), Gaps = 1/328 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+R YNLWDD TKSNE+L KLADS KVV+ LKDL YKAEEAKLI QL EM+AI++GLF++
Sbjct: 87 MIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLFEQ 146
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVSK L QYEMSKLLRG D+EGA +TIKAG GI EIWAEQLL+MY +WA+K
Sbjct: 147 AYNASVDVSKFLYQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKWAEK 206
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG-SFPHEATLAC 179
+GY+GRVV+K KNGG+KSATIEFE EY +GYLSGE G H +I + S HE A
Sbjct: 207 QGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILHETGSAV 266
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VDV+PLFLET+PDLQI D DL SSPS G Q A CIQHIPTGI+VQS GER+HF
Sbjct: 267 VDVIPLFLETAPDLQIDDGDLRISSPSCHGVEQGRTGHAVCIQHIPTGISVQSSGERSHF 326
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANKM+ALNRLKAKL+V EQG+ V IKREAI ++W++ETRRYV HP KLVQDVKT I
Sbjct: 327 ANKMRALNRLKAKLVVTAMEQGIPEVGGIKREAIADMWKQETRRYVFHPNKLVQDVKTDI 386
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
QLPD NSVLDGNI+P I A+I+ R++SD
Sbjct: 387 QLPDLNSVLDGNIEPLIGANISMRQASD 414
>gi|147836146|emb|CAN74766.1| hypothetical protein VITISV_041859 [Vitis vinifera]
Length = 450
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/329 (68%), Positives = 261/329 (79%), Gaps = 2/329 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+R YNLWDD TKSNE+L KLADS KVV+ LKDL YKAEEAKLI QL EM+AI++GLF++
Sbjct: 119 MIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLFEQ 178
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVSK L QYEMSKLLRG D+EGA +TIKAG GI EIWAEQLL+MY +WA+K
Sbjct: 179 AYNASVDVSKFLYQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKWAEK 238
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG-SFPHEAT-LA 178
+GY+GRVV+K KNGG+KSATIEFE EY +GYLSGE G H +I + S HE T A
Sbjct: 239 QGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILHEQTGSA 298
Query: 179 CVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
VDV+PLFLET+PDLQI D DL SSPS G Q A CIQHIPTGI+VQS GER+H
Sbjct: 299 VVDVIPLFLETAPDLQIDDGDLRISSPSCHGVEQGRTGHAVCIQHIPTGISVQSSGERSH 358
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
FANKM+ALNRLKAKL+V EQG+ V IKREAI ++W++ETRRYV HP KLVQDVKT
Sbjct: 359 FANKMRALNRLKAKLVVTAMEQGIPEVGGIKREAIADMWKQETRRYVFHPNKLVQDVKTD 418
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
IQLPD NSVLDGNI+P I A+I+ R++SD
Sbjct: 419 IQLPDLNSVLDGNIEPLIGANISMRQASD 447
>gi|224086914|ref|XP_002308002.1| predicted protein [Populus trichocarpa]
gi|222853978|gb|EEE91525.1| predicted protein [Populus trichocarpa]
Length = 374
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/326 (66%), Positives = 259/326 (79%), Gaps = 1/326 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ NLW+DP KSNE+L+KLA S K ++ALKDL+YKAEEAKLI+QL EMEAI+Y LFK+
Sbjct: 48 MIHECNLWEDPAKSNEILIKLAGSAKAIDALKDLKYKAEEAKLISQLVEMEAINYQLFKQ 107
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY ASLDV KLLDQYEMS+LL+GP D +GA V I+AGS G+ EIW E+LLNMYV+WA+K
Sbjct: 108 AYTASLDVRKLLDQYEMSRLLKGPYDKQGACVVIRAGSKGLNHEIWKEELLNMYVKWAEK 167
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACV 180
GY+GR+V+K +GG++SATIEFEFE A+GYLSGE G H IN NGS HE T ACV
Sbjct: 168 LGYKGRLVEKHTSMHGGIESATIEFEFECAYGYLSGERGIHHKINSQNGSVHHEVTTACV 227
Query: 181 DVVPLFLETSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
DVVPLFL T D QI DE+L+ S SPSL +R+S + C+QHIPTGI+VQS GER+HF
Sbjct: 228 DVVPLFLGTGFDFQIDDEELIVSCSPSLLRDRKSRTELTVCLQHIPTGISVQSSGERSHF 287
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANK+KA NRLKAKLLVI EQ V +VS I+R IV+ WQ+ETRRYVS PYKLVQDV+TGI
Sbjct: 288 ANKVKAHNRLKAKLLVIAEEQKVCDVSSIRRADIVDEWQKETRRYVSQPYKLVQDVRTGI 347
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+LPD NS+LDGNI I AHIN R +
Sbjct: 348 ELPDLNSILDGNINTLIGAHINIRHT 373
>gi|356534710|ref|XP_003535895.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 427
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/324 (63%), Positives = 261/324 (80%), Gaps = 1/324 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MVR++++WDDP KSN++LVKLA+S KVV++LKDL+YK EEAKLI QLAE+ AIDYGL+K+
Sbjct: 101 MVRDFDMWDDPAKSNDILVKLANSAKVVDSLKDLKYKVEEAKLINQLAEINAIDYGLYKQ 160
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLDVS+++D YE+SKLL+GP D+ GA + IKAG G+ P++WAEQ+L+MY+RWA +
Sbjct: 161 AYETSLDVSEIVDLYEISKLLKGPFDMAGACLVIKAGPKGMYPKLWAEQILSMYLRWAKR 220
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATLAC 179
+GY GR+VDKC KNGG+ SA IEFEFE A+GYLSGE G H LI PN S EA+ A
Sbjct: 221 QGYEGRIVDKCLYKNGGINSAIIEFEFECAYGYLSGEKGVHYLIRGSPNESSQLEASSAT 280
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VDV+P+FLE++ DL+I EDL+ SSP + G+ + CIQHIPTGI+VQS GER+HF
Sbjct: 281 VDVIPMFLESACDLEIDSEDLIISSPLIHGKNKRQTDHTVCIQHIPTGISVQSYGERSHF 340
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANKMKALNRLKAKLLV EQGV+++ I++E IVN+WQ E RRYVSHP+KLV DVKTG+
Sbjct: 341 ANKMKALNRLKAKLLVTTKEQGVASIKSIQKENIVNLWQEEIRRYVSHPHKLVHDVKTGV 400
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++PD N VL+GNI P I AHINSR
Sbjct: 401 EVPDLNYVLEGNIGPLIAAHINSR 424
>gi|356498639|ref|XP_003518157.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 385
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/324 (62%), Positives = 257/324 (79%), Gaps = 1/324 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MV ++++W+DP KSN+++VKL +S KVV++L+DL+YK EEAKLI QLAE+ IDYGL+K+
Sbjct: 59 MVWDFDMWNDPAKSNDIIVKLENSAKVVDSLRDLKYKVEEAKLINQLAEINVIDYGLYKQ 118
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLDVS++LDQYE+SKLL+GP D+ GA + IKAG NGI ++WAEQ+L MY+RWA +
Sbjct: 119 AYETSLDVSEILDQYEISKLLKGPFDMAGACLVIKAGPNGIYSKLWAEQILIMYLRWAKR 178
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATLAC 179
+GY GR+VDKC KNGG+ SA IEFEFE A+GYLSGE G H +I PN S EA+ A
Sbjct: 179 QGYAGRIVDKCLFKNGGINSAIIEFEFECAYGYLSGEKGVHYMIRGSPNESSQLEASSAT 238
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VDV+P+FLE + DL+I EDL+ SSP + GE + CIQHIPTGI+VQS GER++F
Sbjct: 239 VDVIPMFLENACDLEIDSEDLIISSPLIHGENKRQTDHTVCIQHIPTGISVQSSGERSYF 298
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANKMKALNRLKAKLLV EQ V+++ I++E IVN+WQ E RRY+SHPYKLV DVKTG+
Sbjct: 299 ANKMKALNRLKAKLLVTAKEQRVASIKSIRKENIVNLWQEEFRRYISHPYKLVHDVKTGV 358
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++PD N+VL+GNI P I AHINSR
Sbjct: 359 EVPDLNNVLEGNIGPLIVAHINSR 382
>gi|357439325|ref|XP_003589939.1| Peptide chain release factor [Medicago truncatula]
gi|355478987|gb|AES60190.1| Peptide chain release factor [Medicago truncatula]
Length = 538
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/324 (64%), Positives = 255/324 (78%), Gaps = 2/324 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MVR+ +LWDDPTKSN++LVKLA+S KVV++LKDLRYK EEAKLI QLAEM AIDYGL+K+
Sbjct: 215 MVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKVEEAKLIKQLAEMNAIDYGLYKQ 274
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVS +LDQYE+SKLL+GP D+ GA + IKA + GI ++WAEQLL MY+ WA +
Sbjct: 275 AYDASVDVSNILDQYEISKLLKGPFDMAGACLVIKAAT-GIFSKLWAEQLLQMYLGWAKR 333
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATLAC 179
+GY GR+VD+C +NGG+ SATIEFEFE A+GYL GE G H LI PN S E + A
Sbjct: 334 QGYEGRIVDRCLTENGGINSATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLETSTAT 393
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VDV+PLFLE + DL+I EDL+ SSP + GE++ + CI HIPTGI VQS GER+ F
Sbjct: 394 VDVIPLFLEKALDLEIDSEDLIISSPLIHGEQKRQTQRIVCIHHIPTGITVQSSGERSQF 453
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANKMKALNRLKAKL VI EQGV +++ I ++ IVN+W+ +TRRYVSHPYKLV DVKT I
Sbjct: 454 ANKMKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNLWEEKTRRYVSHPYKLVHDVKTDI 513
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ D NSVLDGNI P I AHIN+R
Sbjct: 514 EMSDLNSVLDGNIGPLIAAHINTR 537
>gi|356504376|ref|XP_003520972.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 437
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 227/284 (79%), Gaps = 1/284 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MVR++++WDDP KSN++LVKLA+S KVV++LKDL+YK EEAKLI QLAE+ AIDYGL+K+
Sbjct: 101 MVRDFDMWDDPAKSNDILVKLANSAKVVDSLKDLKYKVEEAKLINQLAEINAIDYGLYKQ 160
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLDVS+++DQYE+SKLL+GP D+ GA + IKAG GI P++WAEQ+L+MY+RWA +
Sbjct: 161 AYETSLDVSEIVDQYEISKLLKGPFDMAGACLVIKAGPKGIYPKLWAEQILSMYLRWAKR 220
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATLAC 179
GY GR+VDKC KNGG+ SA IEFEFE A+GYLSGE G H LI PN S EA+ A
Sbjct: 221 RGYEGRIVDKCPFKNGGINSAIIEFEFECAYGYLSGEKGVHYLIRGSPNESSQLEASSAT 280
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VDV+P+FLE++ DL+I EDL+ SSP + G+ + CIQHIPTGI+VQS GER+HF
Sbjct: 281 VDVIPMFLESACDLEIDSEDLIISSPLIHGKNKRQTDHTVCIQHIPTGISVQSYGERSHF 340
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRR 283
ANKMKALNRLKAKLLV EQGV+++ I++E IVN+WQ E RR
Sbjct: 341 ANKMKALNRLKAKLLVTTKEQGVASIKSIQKENIVNLWQEEIRR 384
>gi|22135990|gb|AAM91577.1| putative protein [Arabidopsis thaliana]
gi|30725574|gb|AAP37809.1| At3g57190 [Arabidopsis thaliana]
Length = 372
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 180/329 (54%), Positives = 233/329 (70%), Gaps = 8/329 (2%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 49 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 108
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA++
Sbjct: 109 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERL 168
Query: 122 GYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLAC 179
G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E A
Sbjct: 169 GQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLI---ISSTSNEECSAT 225
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ +QS GERN F
Sbjct: 226 VDIIPLFLRASPDFEVKEGDLIVSYPA--KEDHKIAENMVCIHHIPSGVTLQSSGERNRF 283
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
AN++KALNRLKAKLLVI EQ VS+V+ I + I+ + ETR YVS +K+V D KTG+
Sbjct: 284 ANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNILEP-REETRSYVSKGHKMVVDRKTGL 342
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++ D SVLDGNI P + AHI+ RRS D
Sbjct: 343 EILDLKSVLDGNIGPLLGAHISMRRSIDA 371
>gi|30694592|ref|NP_191278.2| putative peptide chain release factor [Arabidopsis thaliana]
gi|332646104|gb|AEE79625.1| putative peptide chain release factor [Arabidopsis thaliana]
Length = 406
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 180/329 (54%), Positives = 233/329 (70%), Gaps = 8/329 (2%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA++
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERL 202
Query: 122 GYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLAC 179
G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E A
Sbjct: 203 GQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLI---ISSTSNEECSAT 259
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ +QS GERN F
Sbjct: 260 VDIIPLFLRASPDFEVKEGDLIVSYPA--KEDHKIAENMVCIHHIPSGVTLQSSGERNRF 317
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
AN++KALNRLKAKLLVI EQ VS+V+ I + I+ + ETR YVS +K+V D KTG+
Sbjct: 318 ANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNILEP-REETRSYVSKGHKMVVDRKTGL 376
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++ D SVLDGNI P + AHI+ RRS D
Sbjct: 377 EILDLKSVLDGNIGPLLGAHISMRRSIDA 405
>gi|297817036|ref|XP_002876401.1| hypothetical protein ARALYDRAFT_324229 [Arabidopsis lyrata subsp.
lyrata]
gi|297322239|gb|EFH52660.1| hypothetical protein ARALYDRAFT_324229 [Arabidopsis lyrata subsp.
lyrata]
Length = 409
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 181/331 (54%), Positives = 232/331 (70%), Gaps = 11/331 (3%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R Y+LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYYDLWDDPAKSDEILLKLADRAKTVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP---EIWAEQLLNMYVRWA 118
Y +SLDVS+ L YEMSKLL D EGA + IK+GS +IW EQ+++MY++WA
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLTDQYDAEGACMIIKSGSQDAKSQDLQIWTEQVVSMYIKWA 202
Query: 119 DKEGYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEAT 176
+K G RV +KC GV SATIEFEF++A+GYL GE G H LI S E
Sbjct: 203 EKLGQNARVAEKCSFLSNKSGVNSATIEFEFDFAYGYLLGERGVHRLIISSTSS---EEC 259
Query: 177 LACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
A VD++PLFL SPD ++ ++DL+ S P+ E IA+ IQHIP+GI V+S GER
Sbjct: 260 SATVDIIPLFLRASPDFEVKEDDLIVSYPA--KENHKIAENMVSIQHIPSGITVESSGER 317
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
N FAN++KALNRLKAKLLVI EQ +S+V+ I + I+ W+ ETRRYVS K+V D K
Sbjct: 318 NRFANRIKALNRLKAKLLVIAKEQKISDVNKINSKNILKPWE-ETRRYVSKGQKMVVDTK 376
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
TG+++ D SVLDGNI P + AHI+ RRS D
Sbjct: 377 TGLEILDLKSVLDGNIGPLLGAHISMRRSID 407
>gi|6735298|emb|CAB68125.1| putative protein [Arabidopsis thaliana]
Length = 409
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/332 (54%), Positives = 233/332 (70%), Gaps = 11/332 (3%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP---EIWAEQLLNMYVRWA 118
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQDLQIWTEQVVSMYIKWA 202
Query: 119 DKEGYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEAT 176
++ G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E
Sbjct: 203 ERLGQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLI---ISSTSNEEC 259
Query: 177 LACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
A VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ +QS GER
Sbjct: 260 SATVDIIPLFLRASPDFEVKEGDLIVSYPA--KEDHKIAENMVCIHHIPSGVTLQSSGER 317
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
N FAN++KALNRLKAKLLVI EQ VS+V+ I + I+ + ETR YVS +K+V D K
Sbjct: 318 NRFANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNILEP-REETRSYVSKGHKMVVDRK 376
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
TG+++ D SVLDGNI P + AHI+ RRS D
Sbjct: 377 TGLEILDLKSVLDGNIGPLLGAHISMRRSIDA 408
>gi|242087755|ref|XP_002439710.1| hypothetical protein SORBIDRAFT_09g018740 [Sorghum bicolor]
gi|241944995|gb|EES18140.1| hypothetical protein SORBIDRAFT_09g018740 [Sorghum bicolor]
Length = 409
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/327 (49%), Positives = 229/327 (70%), Gaps = 4/327 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++R NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 83 VLRKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 142
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 143 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 202
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI--NFPNGSFPHEATLA 178
+GY+ +++K +G ++SA +E E EY FG LSGE G H +I + N +A A
Sbjct: 203 QGYKVGLIEKIFSTSGHIQSAAMEIESEYMFGTLSGEKGMHQMIYSSLENSDID-QALSA 261
Query: 179 CVDVVPLFLETSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
VD++PLFL+ DL + D D+ S SPS+ +R A +QH+P+G+ +S GER+
Sbjct: 262 RVDIIPLFLDRPVDLHLDDGDIETSPSPSVHKKRGRRNGAAVRVQHVPSGVTAESSGERS 321
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
+FANK+KA +RLKAKLL++ E VS+V I R+AI + ETRRY P+KLV D+ T
Sbjct: 322 YFANKLKATSRLKAKLLLVARELRVSDVKLINRQAIEDKCNSETRRYTFGPHKLVHDLNT 381
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
GIQL D NSVL+G+I+PFI + SR+
Sbjct: 382 GIQLSDLNSVLEGDIEPFIRGRVTSRQ 408
>gi|413945159|gb|AFW77808.1| hypothetical protein ZEAMMB73_793358 [Zea mays]
Length = 408
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/329 (48%), Positives = 229/329 (69%), Gaps = 8/329 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 82 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 142 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI--NFPNGSFPHEATLA 178
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I + N +A A
Sbjct: 202 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMIYSSLENSDID-QALSA 260
Query: 179 CVDVVPLFLETSPDLQISDEDLLFS-SPSL--PGERQSIAKPAACIQHIPTGIAVQSLGE 235
VD++PLFL+ L + D+D+ S SPS+ G+R++ A +QH+P+G+ +S GE
Sbjct: 261 RVDIIPLFLDRPVVLHLDDDDIETSPSPSVHKKGDRRN--GVAVRVQHVPSGVTAESSGE 318
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R++FANK+KA +RLKAKLL+I E VS++ I R+A+ + RRY KLV D+
Sbjct: 319 RSYFANKLKATSRLKAKLLLIARELKVSDIKTINRQAVEDKCNCGARRYTFGRQKLVHDL 378
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRR 324
TGIQL D NSVL+G+I+PFI I SR+
Sbjct: 379 NTGIQLSDLNSVLEGDIEPFIRGRITSRQ 407
>gi|297604413|ref|NP_001055378.2| Os05g0375600 [Oryza sativa Japonica Group]
gi|255676317|dbj|BAF17292.2| Os05g0375600 [Oryza sativa Japonica Group]
Length = 407
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 219/325 (67%), Gaps = 11/325 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++R NLWD+P KS+E L LAD+++VV+ LKDLRYKAEEAKLI+QL+EM+ I+ LFK+
Sbjct: 90 VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ 149
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY+ S+D ++ LD+Y+M KLL+GP D EGA + + AGS+ E++ MY WA K
Sbjct: 150 AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSD--------ERIFCMYSSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G + +V+K +G V +A IE E EY FG L+GE G H +I +P + + +EAT A
Sbjct: 202 QGCKDGLVEKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMI-YPSVDNAGTYEATSA 260
Query: 179 CVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
VD++PLFL+ +L + + DL S +R+ A +QHI TG+ +S GER++
Sbjct: 261 RVDIIPLFLDRPVNLHLDENDLEISPSPSDHKRRDHRNSAIRVQHIRTGVTAESSGERSY 320
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
FANKMKA++RLKAKLLVI E SN+ IKR+ + ++ RETRRY P KLV D+ TG
Sbjct: 321 FANKMKAISRLKAKLLVISRELRSSNLKTIKRQTVEELYSRETRRYKFGPQKLVHDLNTG 380
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
+QL + NSVLDG+I PFI I SR
Sbjct: 381 LQLSELNSVLDGDIDPFIRGRIVSR 405
>gi|357133924|ref|XP_003568571.1| PREDICTED: peptide chain release factor 2-like [Brachypodium
distachyon]
Length = 409
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 214/318 (67%), Gaps = 2/318 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++++ NLWD+P KS+E L L+D+++ V+ LKDL YKAEE+KLI+QLA M+ I+ LFK+
Sbjct: 82 VLQSRNLWDNPAKSHETLSALSDAIRAVDHLKDLLYKAEESKLISQLAGMDVINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLD S+ LD+Y+M KLL+GP D EGA + + A S + E+WAE+L MY WA +
Sbjct: 142 AYEVSLDASEFLDRYQMCKLLKGPYDKEGACIIVTAESESVASELWAEKLFGMYASWARR 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATLAC 179
+G +G +V+K +G ++ A +E E EY FG L GE G H +I + + S +A A
Sbjct: 202 QGCKGGLVEKIVSTSGHIQFAAMEIESEYMFGTLYGEKGVHRMIYSSVDNSGTDKAVSAR 261
Query: 180 VDVVPLFLETSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
VD++PLFL++ +L + D+DL S SPS R IQH+P+G+ QS GER++
Sbjct: 262 VDIIPLFLDSPVNLHLEDDDLEISPSPSGCENRSQRNGATVRIQHMPSGVDAQSSGERSY 321
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
FANK+KA++RLKAKLL++ E V++ ++++A+ RETR Y P + V D+ TG
Sbjct: 322 FANKLKAMSRLKAKLLIVARELRVADAKKVEKQAVEEKCNRETRIYTFGPQESVHDLNTG 381
Query: 299 IQLPDFNSVLDGNIKPFI 316
IQL D NSVL+G+I+PFI
Sbjct: 382 IQLSDLNSVLEGDIEPFI 399
>gi|222637229|gb|EEE67361.1| hypothetical protein OsJ_24645 [Oryza sativa Japonica Group]
Length = 498
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 207/329 (62%), Gaps = 6/329 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L DL+ + EEA+ I +L E +++ID GL + A
Sbjct: 162 DSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEAS 221
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 222 KIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQR 281
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + A V
Sbjct: 282 YKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 341
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 342 EVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERS 401
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 402 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 461
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+ D V+DG + FI A++ + S+
Sbjct: 462 ACETSDITGVMDGELDTFIRAYLKYKLSA 490
>gi|326511439|dbj|BAJ87733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 517
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 208/329 (63%), Gaps = 6/329 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ LWDDP+K+ E+LV L + + V L D + + EEA I QL E +++ID GL + A
Sbjct: 181 DSTLWDDPSKAQELLVALTELKEKVKLLNDFKSQVEEADTIVQLTEELDSIDTGLLEEAS 240
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D +GA +TI AG+ G + WA+ LL MYVRW +K+
Sbjct: 241 KIIKALNKALDNFEMTRLLSGPYDKDGAVITISAGAGGTDAQDWADMLLRMYVRWGEKQR 300
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 301 YKSRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 360
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 361 EVMPLLPEESLDVEIPEEDLDISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCAEERS 420
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 421 QLANKIKALRRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 480
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+ D + V+DG + PFI+A++ + S+
Sbjct: 481 ACETSDISGVMDGELDPFIKAYLQYKLSA 509
>gi|115472651|ref|NP_001059924.1| Os07g0546600 [Oryza sativa Japonica Group]
gi|33146529|dbj|BAC79675.1| putative translation releasing factor2 [Oryza sativa Japonica
Group]
gi|113611460|dbj|BAF21838.1| Os07g0546600 [Oryza sativa Japonica Group]
Length = 460
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 207/329 (62%), Gaps = 6/329 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L DL+ + EEA+ I +L E +++ID GL + A
Sbjct: 124 DSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEAS 183
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 184 KIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQR 243
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + A V
Sbjct: 244 YKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 303
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 304 EVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERS 363
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 364 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 423
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+ D V+DG + FI A++ + S+
Sbjct: 424 ACETSDITGVMDGELDTFIRAYLKYKLSA 452
>gi|297735238|emb|CBI17600.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 205/324 (63%), Gaps = 6/324 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD K+ E L+ L D + L D + + E+A+ I +L E M++ID GL + A
Sbjct: 117 DSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAA 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 177 NIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V
Sbjct: 237 YKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERN 237
+V+PL E S D++I +EDL S G+ Q++ K A I HIPTG+ V+ ER+
Sbjct: 297 EVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERS 356
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 357 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 416
Query: 298 GIQLPDFNSVLDGNIKPFIEAHIN 321
G + D SV+DG ++PFI+A++
Sbjct: 417 GYETSDITSVMDGELEPFIKAYLK 440
>gi|225430898|ref|XP_002276037.1| PREDICTED: peptide chain release factor 2 [Vitis vinifera]
Length = 454
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 205/324 (63%), Gaps = 6/324 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD K+ E L+ L D + L D + + E+A+ I +L E M++ID GL + A
Sbjct: 120 DSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAA 179
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 180 NIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQR 239
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V
Sbjct: 240 YKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGV 299
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERN 237
+V+PL E S D++I +EDL S G+ Q++ K A I HIPTG+ V+ ER+
Sbjct: 300 EVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERS 359
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 360 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 419
Query: 298 GIQLPDFNSVLDGNIKPFIEAHIN 321
G + D SV+DG ++PFI+A++
Sbjct: 420 GYETSDITSVMDGELEPFIKAYLK 443
>gi|46406291|emb|CAG25777.1| putative translation releasing factor 2 [Cucumis sativus]
Length = 453
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 209/326 (64%), Gaps = 6/326 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD +K+ +VL+ + D + L D + + EEA+ I +L E M+++D GL + A +
Sbjct: 121 SFWDDRSKAQKVLMAMTDVKDKIKMLTDFKTQVEEAETIVKLTEEMDSVDVGLLEEATKI 180
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++K LDQ+E+S+LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+ Y+
Sbjct: 181 IKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYK 240
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GY+SGE G H ++ N + + + V+V
Sbjct: 241 TRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 300
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHF 239
+PL + S ++++ +EDL S G+ Q++ K A I HIPTG+ V+ ER+
Sbjct: 301 MPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQL 360
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+TG
Sbjct: 361 ANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGY 420
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ D SV+DG ++PFI+A++ + S
Sbjct: 421 ETSDIVSVMDGELEPFIKAYLKYKYS 446
>gi|125558711|gb|EAZ04247.1| hypothetical protein OsI_26391 [Oryza sativa Indica Group]
Length = 457
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 207/329 (62%), Gaps = 6/329 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L DL+ + EEA+ I +L E +++ID GL + A
Sbjct: 121 DSSLWDDPSKAQEILVALTEVKDRVKLLNDLKSQVEEAETIVKLTEELDSIDTGLLEEAS 180
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 181 KIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQR 240
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + A V
Sbjct: 241 YKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 300
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 301 EVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERS 360
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 361 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 420
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+ D V+DG + FI A++ + S+
Sbjct: 421 ACETSDITGVMDGELDTFIRAYLKYKLSA 449
>gi|357116694|ref|XP_003560113.1| PREDICTED: peptide chain release factor 2-like [Brachypodium
distachyon]
Length = 459
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 204/328 (62%), Gaps = 6/328 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ LWDDP+K+ E+LV L + + V L D + + EEA I +L E +++ID GL + A
Sbjct: 123 DSTLWDDPSKAQELLVALTEVKEKVKILNDFKSQVEEADTIVKLTEELDSIDTGLLEEAS 182
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM+ LL GP D EGA +TI AG+ G + WA+ LL MYVRW +K+
Sbjct: 183 KIIKALNKALDNFEMTLLLSGPYDKEGAVITISAGAGGTDAQDWADMLLRMYVRWGEKQR 242
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E +A+GYLSGE G H ++ N + + A V
Sbjct: 243 YKSRVVEKSPGEEAGIKSATVEIEGRFAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 302
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 303 EVMPLLPEESLDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCSEERS 362
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL RLKAKLLVI EQ S + I+ + + W ++ R YV HPYKLV+DV+T
Sbjct: 363 QLANKIKALRRLKAKLLVIAEEQRASEIKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRT 422
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+ D + V+DG + PFI A++ + S
Sbjct: 423 ACETSDISGVMDGELDPFIRAYLQYKLS 450
>gi|224101237|ref|XP_002312196.1| predicted protein [Populus trichocarpa]
gi|222852016|gb|EEE89563.1| predicted protein [Populus trichocarpa]
Length = 379
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 204/328 (62%), Gaps = 6/328 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDD K+ E L+ L D + L + + K EEA+ I +L E M++ D G + A
Sbjct: 43 DSSLWDDRAKAQETLLALTDVKDKIKLLAEFKTKVEEAETIVKLTEEMDSTDAGFLEEAT 102
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD+YE+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 103 GIIKELNKALDKYELTQLLSGPYDKEGAVLSITAGAGGTDAQDWADMLLRMYVRWGEKQR 162
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GYLSGE G H ++ N + + + V
Sbjct: 163 YKTKVVESSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGV 222
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERN 237
+V+PL E S D+++ +EDL S+ G+ Q++ K A I HIPTG+ V+ ER+
Sbjct: 223 EVMPLLPEESMDVELPEEDLEISTSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERS 282
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
+NK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 283 QLSNKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 342
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRS 325
G + D SV+DG + PFI A++ + S
Sbjct: 343 GHETSDIASVMDGELDPFIRAYLKHKYS 370
>gi|226531101|ref|NP_001152654.1| peptide chain release factor 2 [Zea mays]
gi|195658609|gb|ACG48772.1| peptide chain release factor 2 [Zea mays]
gi|223950205|gb|ACN29186.1| unknown [Zea mays]
gi|414887031|tpg|DAA63045.1| TPA: peptide chain release factor 2 [Zea mays]
Length = 449
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 201/324 (62%), Gaps = 6/324 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ +LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 117 DSSLWDDPSKAQGILVSLTEVKDKVKLLNDFKLQIEEAETIVKLTEELDSIDTGLLEEAS 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 177 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 237 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 297 EVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCSEERS 356
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL+RLKAKLLVI EQ S + I+ + + W ++ R YV HPYKLV+DV+T
Sbjct: 357 QLANKIKALSRLKAKLLVIALEQRASEIKQIRGDIVKAEWGQQIRNYVFHPYKLVKDVRT 416
Query: 298 GIQLPDFNSVLDGNIKPFIEAHIN 321
G + D V+DG + PFI A++
Sbjct: 417 GCETSDITGVMDGELDPFIRAYLK 440
>gi|357507841|ref|XP_003624209.1| Peptide chain release factor [Medicago truncatula]
gi|355499224|gb|AES80427.1| Peptide chain release factor [Medicago truncatula]
Length = 475
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 205/326 (62%), Gaps = 6/326 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD K+ + L LAD + + L D + + E+A+ I L E ME++D GL++ A
Sbjct: 141 SFWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVMLTEEMESVDKGLYEEASSL 200
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K +D++E+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+ Y+
Sbjct: 201 IKELNKSIDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYK 260
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V+V
Sbjct: 261 TRVVEKSLGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 320
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHF 239
+PL E S +++I +EDL S G+ Q++ K A I HIPTG+ ++ ER+
Sbjct: 321 MPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQL 380
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANK+KAL+RLKAKLLVI EQ + I+ + + W ++ R YV HPYKLV+DV+TG
Sbjct: 381 ANKIKALSRLKAKLLVIAEEQRATEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGH 440
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ PD SV+DG + PFI++++ + S
Sbjct: 441 ETPDITSVIDGELDPFIKSYLKHKYS 466
>gi|356531868|ref|XP_003534498.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 456
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 204/324 (62%), Gaps = 6/324 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WD+ K+ E L LAD + L D + + E+A+ I L E M++ID GLF+ A
Sbjct: 122 SFWDNRGKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVSLTEEMDSIDRGLFEEASNL 181
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K +D+YE+++LL GP D EGA ++I AG+ G + WA+ LL MY+RW +K+ Y+
Sbjct: 182 IKELNKSIDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQKYK 241
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V+V
Sbjct: 242 TRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEV 301
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHF 239
+PL + S +++I +EDL S G+ Q++ K A I HIPTG+ V+ ER+
Sbjct: 302 MPLLPDESMNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQL 361
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANK++AL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+TG
Sbjct: 362 ANKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGH 421
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ D SV+DG + PFI++++ +
Sbjct: 422 ETTDITSVMDGELDPFIKSYLKHK 445
>gi|255547508|ref|XP_002514811.1| peptide chain release factor, putative [Ricinus communis]
gi|223545862|gb|EEF47365.1| peptide chain release factor, putative [Ricinus communis]
Length = 458
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 203/328 (61%), Gaps = 6/328 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
N + WDD + E L+ L D + L + + K E+A+ I +L E M++ID GL + A
Sbjct: 125 NTSFWDDRATAQETLLALTDVKDKIKLLTEFKTKVEDAETIVKLTEEMDSIDTGLLEEAS 184
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K L+++E+++LL GP D E A ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 185 SIIKELNKSLERFELTQLLSGPYDKESAVISITAGAGGTDAQDWADMLLRMYVRWGEKQR 244
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSA IE E YA+GYLSGE G H ++ N + + + +
Sbjct: 245 YKTRVVEKSPGEEAGIKSAMIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGI 304
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERN 237
+V+PL E S D+++ +EDL S G+ Q++ K A I HIPTG+ V+ ER+
Sbjct: 305 EVMPLLPEESMDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERS 364
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 365 QLANKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 424
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRS 325
G + D SV+DG ++ FI+A++ + S
Sbjct: 425 GYETSDVTSVMDGELEAFIKAYLKYKYS 452
>gi|449442779|ref|XP_004139158.1| PREDICTED: peptide chain release factor 2-like [Cucumis sativus]
Length = 450
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 209/326 (64%), Gaps = 9/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD +K+ +VL+ + L+ V + + + EEA+ I +L E M+++D GL + A +
Sbjct: 121 SFWDDRSKAQKVLMGVV-ILECVGCV--MMIQVEEAETIVKLTEEMDSVDVGLLEEATKI 177
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++K LDQ+E+S+LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+ Y+
Sbjct: 178 IKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYK 237
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GY+SGE G H ++ N + + + V+V
Sbjct: 238 TRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 297
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHF 239
+PL + S ++++ +EDL S G+ Q++ K A I HIPTG+ V+ ER+
Sbjct: 298 MPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQL 357
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYKLV+DV+TG
Sbjct: 358 ANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGY 417
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ D SV+DG ++PFI+A++ + S
Sbjct: 418 ETSDIVSVMDGELEPFIKAYLKYKYS 443
>gi|242050470|ref|XP_002462979.1| hypothetical protein SORBIDRAFT_02g035755 [Sorghum bicolor]
gi|241926356|gb|EER99500.1| hypothetical protein SORBIDRAFT_02g035755 [Sorghum bicolor]
Length = 363
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 189/301 (62%), Gaps = 6/301 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 59 DSSLWDDPSKAQEILVSLTEVKDRVKLLNDFKLQVEEAETIVKLTEELDSIDTGLLEEAS 118
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 119 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 178
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GY+SGE G H ++ N + + A V
Sbjct: 179 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYISGEKGTHRIVRQSPFNAKGLRQTSFAGV 238
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 239 EVMPLLPEESMAVDIPEEDLDISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCSEERS 298
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK+KALNRLKAKLLVI EQ S + I+ + + W ++ R YV HPYKLV+DV+T
Sbjct: 299 QLANKIKALNRLKAKLLVIAEEQRASEIKQIRGDMVKAEWGQQIRNYVFHPYKLVKDVRT 358
Query: 298 G 298
G
Sbjct: 359 G 359
>gi|297805172|ref|XP_002870470.1| HCF109 [Arabidopsis lyrata subsp. lyrata]
gi|297316306|gb|EFH46729.1| HCF109 [Arabidopsis lyrata subsp. lyrata]
Length = 453
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 199/326 (61%), Gaps = 6/326 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 117 DTSFWDDRTKAQETLSALNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 177 GIIKELNKSLDRFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 237 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERN 237
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AV+ ER+
Sbjct: 297 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERS 356
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK +AL RLKAKLLVI EQ + + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 357 QLANKTRALIRLKAKLLVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 416
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + D SV+DG++ PFI+A++ +
Sbjct: 417 GHETSDITSVMDGDLDPFIKAYLKHK 442
>gi|30692908|ref|NP_851096.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
gi|8777302|dbj|BAA96892.1| translation releasing factor RF-2 [Arabidopsis thaliana]
gi|15810391|gb|AAL07083.1| putative translation releasing factor RF-2 [Arabidopsis thaliana]
gi|21436317|gb|AAM51328.1| putative translation releasing factor RF-2 [Arabidopsis thaliana]
gi|21536944|gb|AAM61285.1| translation releasing factor RF-2 [Arabidopsis thaliana]
gi|332006668|gb|AED94051.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
Length = 456
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 199/326 (61%), Gaps = 6/326 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 120 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 179
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 180 GIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 239
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 240 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 299
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERN 237
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AV+ ER+
Sbjct: 300 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERS 359
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK +AL RLKAKL+VI EQ + + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 360 QLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 419
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + D SV+DG++ PFI+A++ +
Sbjct: 420 GHETSDITSVMDGDLDPFIKAYLKHK 445
>gi|30692913|ref|NP_851097.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
gi|13568392|emb|CAC36322.1| translation releasing factor2 [Arabidopsis thaliana]
gi|332006670|gb|AED94053.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
Length = 455
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 199/326 (61%), Gaps = 6/326 (1%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 119 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 178
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 179 GIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 238
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 239 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 298
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERN 237
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AV+ ER+
Sbjct: 299 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERS 358
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK +AL RLKAKL+VI EQ + + I+ +A+ W ++ R YV HPYKLV+DV+T
Sbjct: 359 QLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 418
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + D SV+DG++ PFI+A++ +
Sbjct: 419 GHETSDITSVMDGDLDPFIKAYLKHK 444
>gi|168025410|ref|XP_001765227.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683546|gb|EDQ69955.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 193/329 (58%), Gaps = 6/329 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRA 64
LWDDP + L LA+ + ++ L+ K EEA+LI +L E E D GL + A
Sbjct: 73 TLWDDPDAAQRTLSDLAEVKENLDLLQQFENKVEEAQLIIELMGEKEGPDGGLVQEASEI 132
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+S LD++E++KLL GP D GA VTI AG+ G + WAE LL MY RWA+K+GY
Sbjct: 133 VSWLSNALDKFELAKLLSGPYDRRGARVTISAGAGGTDAQDWAEMLLRMYSRWAEKQGYT 192
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V++K + G+KS T E + +A+GYL+ E G H L+ N + + A V+V
Sbjct: 193 VKVMEKSPGEEAGIKSVTFEVDGRFAYGYLASEKGTHRLVRQSPFNAKGLRQTSFAGVEV 252
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHF 239
+P+F E S D++I + +L ++ G+ Q++ K A I HIPTGIAV+ ER+
Sbjct: 253 MPIFEEESLDVEIPETELEVTTTRAGGKGGQNVNKVETAVRIVHIPTGIAVRCTEERSQL 312
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
ANK+K L LKAKLLVI EQ S++ I+ + + W ++ R YV HPYKLV+DV+T
Sbjct: 313 ANKIKGLRLLKAKLLVIALEQKASDLKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTAT 372
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ D V+DG + FI A + + S++
Sbjct: 373 ETSDVAGVMDGELGSFITAFLRWKTLSES 401
>gi|302820696|ref|XP_002992014.1| hypothetical protein SELMODRAFT_134701 [Selaginella moellendorffii]
gi|300140136|gb|EFJ06863.1| hypothetical protein SELMODRAFT_134701 [Selaginella moellendorffii]
Length = 382
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 197/328 (60%), Gaps = 6/328 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRAS 65
W++ +K+ ++L +L + VN K R K ++A+ I +L EME+ D L A
Sbjct: 51 FWEERSKAQKILSELNEIKDRVNLYKTFRAKVDDAQCIVELLEEMESPDAALKLEAAETV 110
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D++E++KLL G D EGA +TI AG+ G + WAE LL MY RWA + G++
Sbjct: 111 SWITAAMDRFELNKLLSGTYDKEGARITITAGAGGTDAQDWAEMLLRMYQRWATRSGFKS 170
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VV+ + G+KSAT+E + YA+GY+SGE G H L+ N + + A V+V+
Sbjct: 171 TVVESSPGEEAGIKSATLEIDGRYAYGYISGEKGTHRLVRQSPFNSKGLRQTSFAGVEVM 230
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL E+ +++I + DL + S G+ + + A + HIPTGIA++ ER+
Sbjct: 231 PLLEESEIEVEIPEGDLEITTCRSGGKGGQNVNKVETAVRVTHIPTGIALRCSEERSQLQ 290
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK+KA+ LK+KLLVI+ +Q + + I+ + + W ++ R YV HPYKLV+D++T ++
Sbjct: 291 NKIKAIALLKSKLLVILEDQRAAEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDLRTNVE 350
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
D + ++DGN++P + A++ S++SS +
Sbjct: 351 TSDISGIMDGNLEPLLTAYLMSKQSSSS 378
>gi|302762182|ref|XP_002964513.1| hypothetical protein SELMODRAFT_64370 [Selaginella moellendorffii]
gi|300168242|gb|EFJ34846.1| hypothetical protein SELMODRAFT_64370 [Selaginella moellendorffii]
Length = 366
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 193/323 (59%), Gaps = 6/323 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRAS 65
W++ +K+ ++L +L + VN K R K ++A+ I +L EME+ D L A
Sbjct: 44 FWEERSKAQKILSELNEIKDRVNLYKTFRAKVDDAQCIVELLEEMESPDAALKLEAAETV 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D++E++KLL G D EGA +TI AG+ G + WAE LL MY RWA + G++
Sbjct: 104 SWITAAMDRFELNKLLSGTYDKEGARITITAGAGGTDAQDWAEMLLRMYQRWATRSGFKS 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VV+ + G+KSAT+E + YA+GY+SGE G H L+ N + + A V+V+
Sbjct: 164 TVVESSPGEEAGIKSATLEIDGRYAYGYISGEKGTHRLVRQSPFNSKGLRQTSFAGVEVM 223
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL E+ +++I + DL + S G+ + + A + HIPTGIA++ ER+
Sbjct: 224 PLLEESEIEVEIPEGDLEITTCRSGGKGGQNVNKVETAVRVTHIPTGIALRCSEERSQLQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK+KA+ LK+KLLVI+ EQ + + I+ + + W ++ R YV HPYKLV+D++T ++
Sbjct: 284 NKIKAIALLKSKLLVILEEQRAAEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDLRTNVE 343
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
D + ++DGN++P + A++ S+
Sbjct: 344 TSDISGIMDGNLEPLLTAYLMSK 366
>gi|428779410|ref|YP_007171196.1| peptide chain release factor 2 [Dactylococcopsis salina PCC 8305]
gi|428693689|gb|AFZ49839.1| peptide chain release factor 2 [Dactylococcopsis salina PCC 8305]
Length = 367
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 186/324 (57%), Gaps = 7/324 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + L KL D + R +AE+ K I +L E EA D+ L++ A
Sbjct: 45 FWDDPETAQGTLQKLNDLKSAWEQYQKWRDRAEDTKAILELLETEA-DHALWEEATENLQ 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD++E+ +LL P D GA +TI G+ G + WA+ LL MY RW +K+GY
Sbjct: 104 TLNQALDRWELQQLLSDPYDERGAVLTINTGAGGTDAQDWAQMLLRMYSRWGEKQGYTVN 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E Y +GYL GE G H L+ N + + + A V+V+P
Sbjct: 164 LAELSEGDEAGIKSATLEIEGRYGYGYLKGEKGTHRLVRISPYNANGKRQTSFAGVEVMP 223
Query: 185 LFLETS-PDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
+ +T+ D+++ ++DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 224 MLDQTTIQDIELPEKDLEITTSRAGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KA+ LK+KL+VI EQ ++ I+ +A+ W + R YV HPY++V+D++T ++
Sbjct: 284 NREKAIALLKSKLIVIAQEQRAQKIAEIRGDAVEAAWGNQIRNYVFHPYQMVKDLRTNVE 343
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
VLDG I PF+EA++ S++
Sbjct: 344 TSAVEDVLDGEINPFVEAYLRSKQ 367
>gi|209527406|ref|ZP_03275912.1| peptide chain release factor 2 [Arthrospira maxima CS-328]
gi|376006049|ref|ZP_09783392.1| Peptide chain release factor 2 (RF-2) [Arthrospira sp. PCC 8005]
gi|423067877|ref|ZP_17056667.1| peptide chain release factor 2 [Arthrospira platensis C1]
gi|209492141|gb|EDZ92490.1| peptide chain release factor 2 [Arthrospira maxima CS-328]
gi|375325573|emb|CCE19145.1| Peptide chain release factor 2 (RF-2) [Arthrospira sp. PCC 8005]
gi|406710620|gb|EKD05827.1| peptide chain release factor 2 [Arthrospira platensis C1]
Length = 339
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 184/320 (57%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD T++ + L L+D V+ +D R E+ IA+L E+E D L + A
Sbjct: 9 NFWDDQTQAQKTLQTLSDLKSVLQQQQDWRKTLEDTGAIAELLELED-DESLRQEAESNV 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D++E+ +LL GP D GA +TI AG+ G + WAE LL MY RW + +GY+
Sbjct: 68 VHLGRDIDRWELQQLLSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL E G H L+ N + + + A V+++
Sbjct: 128 HLAEISEGDEAGIKSATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIM 187
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
P+ E + +L I ++DL ++ G+ Q++ K A I HIPTGIAV+ ER+
Sbjct: 188 PILDEGAINLDIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQ 247
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KA+ LKAKLLV+ EQ ++ I+ + + W + R YV HPY++V+D++TG +
Sbjct: 248 NREKAMALLKAKLLVVAQEQRAQAIAEIRGDLVEAAWGNQIRNYVFHPYQMVKDLRTGEE 307
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
N V++G + FI+A++
Sbjct: 308 TTAINDVMNGELDGFIQAYL 327
>gi|7388055|sp|P74476.2|RF2_SYNY3 RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 372
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 184/320 (57%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ ++L L ++ + + + ++++ I +L E+E D L A
Sbjct: 46 DFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED-DQALLTEAETTL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD++E+ +LL GP D +GA++TI AG+ G + WAE LL MY RW++K+GY+
Sbjct: 105 EQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS T+E E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 165 HLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTSFAGVEVM 224
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
PL E + L I D+DL S+ G+ Q++ K A I H+PTG+AV+ ER+
Sbjct: 225 PLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCTQERSQLQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+++ EQ ++ I+ + + W + R YV HPY+LV+D++T ++
Sbjct: 285 NKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQLVKDLRTNVE 344
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V+DG + FIEA++
Sbjct: 345 TTDVGGVMDGELSDFIEAYL 364
>gi|383322914|ref|YP_005383767.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326083|ref|YP_005386936.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491967|ref|YP_005409643.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437235|ref|YP_005651959.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|339274267|dbj|BAK50754.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|359272233|dbj|BAL29752.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275403|dbj|BAL32921.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278573|dbj|BAL36090.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407961451|dbj|BAM54691.1| peptide chain release factor 2 [Synechocystis sp. PCC 6803]
Length = 335
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 184/320 (57%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ ++L L ++ + + + ++++ I +L E+E D L A
Sbjct: 9 DFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED-DQALLTEAETTL 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD++E+ +LL GP D +GA++TI AG+ G + WAE LL MY RW++K+GY+
Sbjct: 68 EQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS T+E E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 128 HLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTSFAGVEVM 187
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
PL E + L I D+DL S+ G+ Q++ K A I H+PTG+AV+ ER+
Sbjct: 188 PLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCTQERSQLQ 247
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+++ EQ ++ I+ + + W + R YV HPY+LV+D++T ++
Sbjct: 248 NKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQLVKDLRTNVE 307
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V+DG + FIEA++
Sbjct: 308 TTDVGGVMDGELSDFIEAYL 327
>gi|428770307|ref|YP_007162097.1| peptide chain release factor 2 (bRF-2) [Cyanobacterium aponinum PCC
10605]
gi|428684586|gb|AFZ54053.1| bacterial peptide chain release factor 2 (bRF-2) [Cyanobacterium
aponinum PCC 10605]
Length = 368
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+ K+ E L +L D + + + E+ K I +L EME +D LF A
Sbjct: 45 FWEAGEKAQETLQQLNDFKSLWDTFHQWQSSLEDTKAIVELLEME-LDSELFNEAQCNLK 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RWA+ + YR
Sbjct: 104 SLAQDLDKWELQQLLSGTYDQKGAILTINAGAGGTDAQDWAQMLLRMYTRWAENQNYRVT 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E + +YAFGYL GE G H L+ N + + + A VDV+P
Sbjct: 164 LTELSEGDEAGIKSATLEIDGKYAFGYLKGEKGTHRLVRISPYNANGKRQTSFAGVDVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFAN 241
E + + I ++DL ++ G+ Q++ K A I HIPTGIAV+ ER+ N
Sbjct: 224 SLGEEAIKIDIPEKDLEVTTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LK KLLVI+ EQ ++ I+ + + W + R YV HPY+LV+DV+T ++
Sbjct: 284 KEKALAILKGKLLVILEEQRAKAIADIRGDIVEAAWGNQIRNYVFHPYQLVKDVRTNVET 343
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSS 326
+ VLDGN++ FIEA++ +S
Sbjct: 344 AAVDDVLDGNLEAFIEAYLRESTNS 368
>gi|428777383|ref|YP_007169170.1| peptide chain release factor 2 (bRF-2) [Halothece sp. PCC 7418]
gi|428691662|gb|AFZ44956.1| bacterial peptide chain release factor 2 (bRF-2) [Halothece sp. PCC
7418]
Length = 368
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 185/322 (57%), Gaps = 7/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + + L KL D + R +AE+ + I +L E EA D L++ A +
Sbjct: 45 FWDDPDSAQQTLQKLNDLKSALEQYHQWRDRAEDTQAIIELLETEA-DPALWEEATQNLE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + L+++E+ +LL P D GA +T+ G+ G + WA+ LL MY RWA+K GY+
Sbjct: 104 ALQQSLERWELQQLLCEPYDERGAVLTLNTGAGGTDAQDWAQMLLRMYSRWAEKRGYKAH 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSA++E E YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 164 LAELSEGDEAGIKSASLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETS-PDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
+ +T+ D+++ ++DL ++ G+ Q++ K A I HIPTGIAV+ ER+
Sbjct: 224 MLDQTTIQDIELPEKDLEITTSRAGGKGGQNVNKVETAVRILHIPTGIAVRCTQERSQLQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KA+ LK+KL+VI EQ ++ I+ EA+ W + R YV HPY++V+D++T ++
Sbjct: 284 NREKAIALLKSKLIVIAQEQRAQKIAEIRGEAVEAAWGNQIRNYVFHPYQMVKDLRTNVE 343
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
VLDG I FIEA++ +
Sbjct: 344 TSAVEDVLDGEIDAFIEAYLRN 365
>gi|307111728|gb|EFN59962.1| hypothetical protein CHLNCDRAFT_133064 [Chlorella variabilis]
Length = 426
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 186/325 (57%), Gaps = 7/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+ ++ VL +L + V AL+ + E+ + +L EME A S
Sbjct: 83 DLWEQRARATAVLQQLTALREEVAALERFCGQLEDLGVAMELLEMEDEAGAQAMAAEAGS 142
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ L+ +E+ +LL GP D GA +TI+AG+ G + WAE L MY+RWA+K+G+
Sbjct: 143 ICDGLAAGLEAWELRRLLGGPYDDRGAVLTIQAGAGGTDAQDWAEMLERMYLRWAEKQGH 202
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
R RVVD+ + G+KS IE + YA+GYL GE G H L+ N + + A V+
Sbjct: 203 RTRVVDRQQGEEAGIKSVEIEVDGRYAYGYLHGEKGTHRLVRQSPFNAKAARQTSFAAVE 262
Query: 182 VVPLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ E ++++ + DL + S G+ + + A I+H+PTGIAV+ ER+
Sbjct: 263 VMPMLGELVDEVELPESDLEITTMRSAGAGGQNVNKVETAVRIKHLPTGIAVKCQMERSQ 322
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK AL LKAKLLV+ EQ + V+ I+ + + W ++ R YV HPYKLV+DV+TG
Sbjct: 323 AQNKSIALGMLKAKLLVVAQEQQLQEVAEIRGDLVKAEWGQQIRNYVFHPYKLVKDVRTG 382
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
+ D V+DG ++PF++A++ R
Sbjct: 383 QETSDVAGVMDGELQPFMQAYLQHR 407
>gi|428773350|ref|YP_007165138.1| peptide chain release factor 2 (bRF-2) [Cyanobacterium stanieri PCC
7202]
gi|428687629|gb|AFZ47489.1| bacterial peptide chain release factor 2 (bRF-2) [Cyanobacterium
stanieri PCC 7202]
Length = 368
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 183/320 (57%), Gaps = 5/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+ K+ ++L L + + + + E+ K I +L E+E D LF A
Sbjct: 44 QFWDEADKAQKILQDLNELKSSLAQITRWQKSLEDTKAIVELLELEEEDLELFTEAEHNL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD++E+ KLL GP D GA +TI AG+ G + WA+ LL MY RWA+K+ Y+
Sbjct: 104 TRLAQELDRWELRKLLSGPYDQRGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEKQDYKV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D G+KS ++E E YAFGYL GE G H L+ N + + + A VDV+
Sbjct: 164 TLTDMSEGDEAGIKSVSLEIEGRYAFGYLRGEKGTHRLVRISPFNANGKRQTSFAGVDVM 223
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
PL + D+ I D+DL ++ G+ Q++ K A I H+PTGIAV+ ER+
Sbjct: 224 PLLENEALDVDIPDKDLEVTTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCTQERSQLQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 284 NKEKALAILKAKLLVIAQEQKIQEIAEIRGDIVEAAWGMQIRNYVFHPYQMVKDLRTNVE 343
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
++V+DG++ FIEA++
Sbjct: 344 TNAIDNVMDGDLDAFIEAYL 363
>gi|443316594|ref|ZP_21046032.1| peptide chain release factor 2 [Leptolyngbya sp. PCC 6406]
gi|442783787|gb|ELR93689.1| peptide chain release factor 2 [Leptolyngbya sp. PCC 6406]
Length = 364
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 185/319 (57%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDPT++ ++ L D ++ ++ + E+A+ + +L + +A D L A +
Sbjct: 36 LWDDPTQAQGIMQSLNDYKAQLSQIQQWWGQLEDAEAVLELLDEDA-DEALLAEAQTSLS 94
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LDQ+E+ +LL GP D GA ++I AG+ G + WAE LL MY RW +++GY+
Sbjct: 95 DLDRALDQWELQQLLSGPYDKNGAVLSINAGAGGTDAQDWAEMLLRMYTRWGERQGYQVY 154
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+V+ + G+KS T+E + YAFGYL E G H L+ N + + + A V+V+P
Sbjct: 155 LVELSEGEEAGLKSVTLEIQGRYAFGYLKAEKGTHRLVRISPFNSNGKRQTSFAGVEVMP 214
Query: 185 LFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ L+ + L I D+DL S G+ + + A I H+PTGI+V+ ER+ N
Sbjct: 215 I-LDRTVTLDIPDKDLEIKTSRSGGAGGQNVNKVETAVRITHLPTGISVRCTQERSQLQN 273
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ KA+ L A+L+VI EQ ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 274 REKAMALLTARLMVIAQEQKAQAIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNEET 333
Query: 302 PDFNSVLDGNIKPFIEAHI 320
++V+DG ++PFI+A++
Sbjct: 334 TAIDTVMDGELEPFIQAYL 352
>gi|81299215|ref|YP_399423.1| peptide chain release factor 2 [Synechococcus elongatus PCC 7942]
gi|81168096|gb|ABB56436.1| bacterial peptide chain release factor 2 (bRF-2) [Synechococcus
elongatus PCC 7942]
Length = 304
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 173/284 (60%), Gaps = 8/284 (2%)
Query: 44 IAQLAEMEAI--DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGI 101
I + E+ AI D LF+ A + + LDQ+E+ +LL GP D EGA ++I AG+ G
Sbjct: 10 ITAILELLAIEPDPALFEEAETNVQRLQRELDQWELQQLLSGPYDAEGAILSINAGAGGT 69
Query: 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161
+ WAE LL MY RWA+ +GY+ R+ + + G+KS T+E E +YA+GYL E G H
Sbjct: 70 DAQDWAEMLLRMYTRWAEDQGYKVRITELSEGEEAGIKSVTLEIEGKYAYGYLKAEKGTH 129
Query: 162 CLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK-- 216
L+ N + + + A V+V+P+ L+T DL+I ++DL ++ G+ Q++ K
Sbjct: 130 RLVRISPFNANDKRQTSFAGVEVMPV-LDTDIDLEIPEKDLEITTSRAGGKGGQNVNKVE 188
Query: 217 PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI 276
A I H+PTG+AV+ ER+ NK KAL LKAKLLV++ EQ V+ I+ + +
Sbjct: 189 TAVRIVHLPTGLAVRCTEERSQLQNKEKALVILKAKLLVVLQEQKAKEVAEIRGDMVEAA 248
Query: 277 WQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
W + R YV HPY+LV+D++TG++ V++G++ PFI+A++
Sbjct: 249 WGNQIRNYVFHPYQLVKDLRTGVETKAIADVMNGDLNPFIQAYL 292
>gi|56751121|ref|YP_171822.1| peptide chain release factor 2 [Synechococcus elongatus PCC 6301]
gi|56686080|dbj|BAD79302.1| peptide chain release factor RF-2 [Synechococcus elongatus PCC
6301]
Length = 304
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 173/284 (60%), Gaps = 8/284 (2%)
Query: 44 IAQLAEMEAI--DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGI 101
I + E+ AI D LF+ A + + LDQ+E+ +LL GP D EGA ++I AG+ G
Sbjct: 10 ITAILELLAIEPDPALFEEAETNVQRLQRELDQWELQQLLSGPYDAEGAILSINAGAGGT 69
Query: 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161
+ WAE LL MY RWA+ +GY+ R+ + + G+KS T+E E +YA+GYL E G H
Sbjct: 70 DAQDWAEMLLRMYTRWAEDQGYKVRITELSEGEEAGIKSVTLEIEGKYAYGYLKAEKGTH 129
Query: 162 CLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK-- 216
L+ N + + + A V+V+P+ L+T DL+I ++DL ++ G+ Q++ K
Sbjct: 130 RLVRISPFNANDKRQTSFAGVEVMPV-LDTDIDLEIPEKDLEITTSRAGGKGGQNVNKVE 188
Query: 217 PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI 276
A I H+PTG+AV+ ER+ NK KAL L+AKLLV++ EQ V+ I+ + +
Sbjct: 189 TAVRIVHLPTGLAVRCTEERSQLQNKEKALVILRAKLLVVLQEQKAKEVAEIRGDMVEAA 248
Query: 277 WQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
W + R YV HPY+LV+D++TG++ V++G++ PFI+A++
Sbjct: 249 WGNQIRNYVFHPYQLVKDLRTGVETKAIADVMNGDLNPFIQAYL 292
>gi|427723106|ref|YP_007070383.1| peptide chain release factor 2 (bRF-2) [Leptolyngbya sp. PCC 7376]
gi|427354826|gb|AFY37549.1| bacterial peptide chain release factor 2 (bRF-2) [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 183/319 (57%), Gaps = 6/319 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++ + + +L D ++ + + E+A+ IA+L E+E D L A +
Sbjct: 46 FWENQDTAQTTMQELNDLKANLDQYEQWHSQFEDAEAIAELLELED-DPALLDEAIQNLE 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD++E+ ++L G D GA +TI AG+ G + WAE LL MY RW++K+GY+ +
Sbjct: 105 TLQKELDRWELQQMLSGEYDNNGAVLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVK 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E YAFGYL E G H L+ N + + + A ++++P
Sbjct: 165 LAEISEGDEAGLKSATLEIEGRYAFGYLKSEKGTHRLVRISPFNANGKRQTSFAGIEIMP 224
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFAN 241
+ + + ++I D+DL ++ G+ Q++ K A I H+PTGIAV+ ER+ N
Sbjct: 225 VLGDDAVKVEIPDKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCTQERSQLQN 284
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKLLVI EQ ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 285 KEKAMALLKAKLLVIAQEQRTQEIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNKET 344
Query: 302 PDFNSVLDGNIKPFIEAHI 320
D + V+DG++ FIEA++
Sbjct: 345 TDVSGVMDGDLDSFIEAYL 363
>gi|16331171|ref|NP_441899.1| peptide chain release factor 2 [Synechocystis sp. PCC 6803]
gi|451815327|ref|YP_007451779.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|1653665|dbj|BAA18577.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|451781296|gb|AGF52265.1| peptide chain release factor [Synechocystis sp. PCC 6803]
Length = 288
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 168/289 (58%), Gaps = 8/289 (2%)
Query: 46 QLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEI 105
+L E+E D L A + K LD++E+ +LL GP D +GA++TI AG+ G +
Sbjct: 2 ELLELED-DQALLTEAETTLEQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQD 60
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WAE LL MY RW++K+GY+ + + G+KS T+E E YA+GYL E G H L+
Sbjct: 61 WAEMLLRMYTRWSEKQGYKVHLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVR 120
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAAC 220
N + + + A V+V+PL E + L I D+DL S+ G+ Q++ K A
Sbjct: 121 ISPFNANGKRQTSFAGVEVMPLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVR 180
Query: 221 IQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRE 280
I H+PTG+AV+ ER+ NK KAL LKAKLL+++ EQ ++ I+ + + W +
Sbjct: 181 IVHLPTGLAVRCTQERSQLQNKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQ 240
Query: 281 TRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
R YV HPY+LV+D++T ++ D V+DG + FIEA++ R S+ D
Sbjct: 241 IRNYVFHPYQLVKDLRTNVETTDVGGVMDGELSDFIEAYL--RHSARLD 287
>gi|354552620|ref|ZP_08971928.1| Peptide chain release factor 2 [Cyanothece sp. ATCC 51472]
gi|353555942|gb|EHC25330.1| Peptide chain release factor 2 [Cyanothece sp. ATCC 51472]
Length = 370
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 184/327 (56%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDDP + L +L D + + ++ E+ K IA+L E+E D L + A
Sbjct: 44 QFWDDPETAQTTLQELNDLKSQLEQYQRWCHQLEDTKAIAELLELED-DTTLRQEAQENI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 103 TQLNHNLDRWELQQLLSGIYDTKGAILTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A V+V+
Sbjct: 163 DLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P E ++I D+DL S+ G+ Q++ K ++ HIPTGIAV+ ER+
Sbjct: 223 PALEEDDLKVEIPDKDLEISTSRSGGKGGQNVNKVETAVRVVHIPTGIAVRCTQERSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T I+
Sbjct: 283 NKEKALALLKAKLLIIAQEQRAQEIAEIRGDMVDAAWGNQIRNYVFHPYQMVKDLRTNIE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
D V+DG + PFIEA++ SSD
Sbjct: 343 TTDITGVMDGYLDPFIEAYLRYDTSSD 369
>gi|116072022|ref|ZP_01469290.1| peptide chain release factor 2 [Synechococcus sp. BL107]
gi|116065645|gb|EAU71403.1| peptide chain release factor 2 [Synechococcus sp. BL107]
Length = 356
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 180/320 (56%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++AK +L E+EA D + A +
Sbjct: 26 DFWNDQQNAQKQMRRLDEVKAQLKQLADWRSAIDDAKATLELYELEA-DEDMLGEAQQGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ R
Sbjct: 85 TELRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMRV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KSATIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 145 TIDEISEGEEAGIKSATIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE D+ I D+DL + S G+ + + A IQH+PTG+AV+ ER+
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRIQHLPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQEE 323
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D +V+DG + PFI+A +
Sbjct: 324 TNDVQAVMDGALDPFIDASL 343
>gi|172039100|ref|YP_001805601.1| peptide chain release factor 2 [Cyanothece sp. ATCC 51142]
gi|171700554|gb|ACB53535.1| peptide chain release factor 2 [Cyanothece sp. ATCC 51142]
Length = 358
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 184/326 (56%), Gaps = 6/326 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + L +L D + + ++ E+ K IA+L E+E D L + A
Sbjct: 33 FWDDPETAQTTLQELNDLKSQLEQYQRWCHQLEDTKAIAELLELED-DTTLRQEAQENIT 91
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 92 QLNHNLDRWELQQLLSGIYDTKGAILTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKVD 151
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A V+V+P
Sbjct: 152 LTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 211
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFAN 241
E ++I D+DL S+ G+ Q++ K ++ HIPTGIAV+ ER+ N
Sbjct: 212 ALEEDDLKVEIPDKDLEISTSRSGGKGGQNVNKVETAVRVVHIPTGIAVRCTQERSQLQN 271
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T I+
Sbjct: 272 KEKALALLKAKLLIIAQEQRAQEIAEIRGDMVDAAWGNQIRNYVFHPYQMVKDLRTNIET 331
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
D V+DG + PFIEA++ SSD
Sbjct: 332 TDITGVMDGYLDPFIEAYLRYDTSSD 357
>gi|78185691|ref|YP_378125.1| peptide chain release factor 2 [Synechococcus sp. CC9902]
gi|78169985|gb|ABB27082.1| bacterial peptide chain release factor 2 (bRF-2) [Synechococcus sp.
CC9902]
Length = 356
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 180/320 (56%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++AK +L E+EA D + A +
Sbjct: 26 DFWNDQQNAQKQMRRLDEVKAQLQQLADWRSAIDDAKATLELYELEA-DEEMLGEAQQGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ R
Sbjct: 85 TELRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMRV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KSATIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 145 TIDEISEGEEAGIKSATIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE D+ I D+DL + S G+ + + A IQH+PTG+AV+ ER+
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRIQHLPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQEE 323
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D +V+DG + PFI+A +
Sbjct: 324 TNDVQAVMDGALDPFIDASL 343
>gi|170076819|ref|YP_001733457.1| peptide chain release factor 2 [Synechococcus sp. PCC 7002]
gi|169884488|gb|ACA98201.1| peptide chain release factor 2 [Synechococcus sp. PCC 7002]
Length = 359
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 180/319 (56%), Gaps = 6/319 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + ++L +L + V + + + E+A IA+L EA D L A
Sbjct: 34 FWEDQQGAQDILQELTELKGTVAQYQQWQGQFEDAAAIAELL-TEAEDPALLTEAMENLD 92
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ K L+++E+ ++L G D GA +TI AG+ G + WAE LL MY RW++K+GY+ R
Sbjct: 93 DLQKELNRWELQQMLSGEYDNLGAVLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVR 152
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E YAFGYL E G H L+ N + + + A V+V+P
Sbjct: 153 LAEISEGDEAGLKSATLEVTGRYAFGYLKHEKGTHRLVRISPFNANGKRQTSFAGVEVMP 212
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFAN 241
+ + + + I ++DL ++ G+ Q++ K A I H+PTG+AV+ ER+ N
Sbjct: 213 ILGDNAVKVDIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGVAVRCTQERSQLQN 272
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 273 KEKALAILKAKLLIIAQEQRAQEIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNHET 332
Query: 302 PDFNSVLDGNIKPFIEAHI 320
D + V+DG++ FIEA +
Sbjct: 333 TDVDGVMDGDLDAFIEASL 351
>gi|440684132|ref|YP_007158927.1| Peptide chain release factor 2 [Anabaena cylindrica PCC 7122]
gi|428681251|gb|AFZ60017.1| Peptide chain release factor 2 [Anabaena cylindrica PCC 7122]
Length = 373
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 179/319 (56%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD T++ + L +L D + ++ +++ +L E+E D L + A
Sbjct: 45 FWDDQTQAQQTLQELNDLKDHLEQYYQWHANLDDTRVVIELLELET-DESLLQEAESTIT 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LDQ+E+ +LL GP D++GA +TI AG+ G + WA L+ MY RWA+ GY+
Sbjct: 104 KLNRELDQWELQQLLSGPYDIQGAVLTINAGAGGTDAQDWAFMLMRMYTRWAEDHGYKVI 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ ++ G+KSAT+E YA+GYL E G H L+ N + + + A V+V+P
Sbjct: 164 LSEESEGDEAGIKSATLEITGRYAYGYLRSEMGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFAN 241
++ + L I ++DL ++ G+ Q++ K A I H+PTG+AV+ ER+ N
Sbjct: 224 Q-IDNTVKLDIPEKDLEITTTRSGGKGGQNVNKVETAVRIVHLPTGLAVRCTEERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL RLKAKLLVI EQ ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 283 KEKALARLKAKLLVIAKEQRAQEIAEIRGDMVEASWGNQIRNYVFHPYQMVKDLRTNTET 342
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+++G I FI+A++
Sbjct: 343 TAIGDIMNGEIDAFIQAYL 361
>gi|291568918|dbj|BAI91190.1| peptide chain release factor 2 [Arthrospira platensis NIES-39]
Length = 316
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 175/305 (57%), Gaps = 6/305 (1%)
Query: 21 LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80
++D V+ +D R E+ IA+L E+E D L + A + + + +D++E+ +L
Sbjct: 1 MSDLKSVLQQQQDWRKTLEDTGAIAELLELED-DESLRQEAESNVVHLGRDIDRWELQQL 59
Query: 81 LRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKS 140
L GP D GA +TI AG+ G + WAE LL MY RW + +GY+ + + G+KS
Sbjct: 60 LSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAELSEGDEAGIKS 119
Query: 141 ATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDE 198
AT+E E YA+GYL E G H L+ N + + + A V+++P+ E + +L I ++
Sbjct: 120 ATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPILDEGAINLDIPEK 179
Query: 199 DLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLV 255
DL ++ G+ Q++ K A I HIPTGIAV+ ER+ N+ KA+ LKAKLLV
Sbjct: 180 DLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQNREKAMALLKAKLLV 239
Query: 256 IVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPF 315
+ EQ ++ I+ + + W + R YV HPY++V+D++TG + N V++G + F
Sbjct: 240 VAQEQRAQAIAEIRGDLVEAAWGNQIRNYVFHPYQMVKDLRTGEETTAINDVMNGELDGF 299
Query: 316 IEAHI 320
I+A++
Sbjct: 300 IQAYL 304
>gi|443323118|ref|ZP_21052128.1| peptide chain release factor 2 [Gloeocapsa sp. PCC 73106]
gi|442787173|gb|ELR96896.1| peptide chain release factor 2 [Gloeocapsa sp. PCC 73106]
Length = 302
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 167/289 (57%), Gaps = 6/289 (2%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
E+ K IA+L E EA D L + A +++ LD++E+ +LL GP D +GA +TI AG+
Sbjct: 12 EDTKAIAELLEQEA-DASLQQEAVTTISNLNLALDRWELQQLLSGPYDAKGAVITINAGA 70
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + W E LL MY RW+ K+GY+ + + G+KS T+E E YAFG L GE
Sbjct: 71 GGTDAQDWVEMLLRMYTRWSQKQGYKVHLAELSEGDEAGIKSVTLEIEGRYAFGSLKGEK 130
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIA 215
G H L+ N + + + A V+V+P + +++I ++DL ++ G+ Q++
Sbjct: 131 GTHRLVRISPFNANGKRQTSFAGVEVMPALGLDAVNVEIPEKDLEITTSRSGGKGGQNVN 190
Query: 216 KPAACIQ--HIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAI 273
K ++ H+PTG+AV+ ER+ NK KAL LKAKL++I EQ ++ I+ + +
Sbjct: 191 KVETAVRVVHLPTGLAVRCTQERSQLQNKEKALTLLKAKLMIIAQEQRAQAIAQIRGDMV 250
Query: 274 VNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
W + R YV HPY++V+D++T ++ VLDG I FIEA++ S
Sbjct: 251 EAAWGNQIRNYVFHPYQMVKDLRTNVETTAVEDVLDGEIDQFIEAYLQS 299
>gi|427721077|ref|YP_007069071.1| peptide chain release factor 2 [Calothrix sp. PCC 7507]
gi|427353513|gb|AFY36237.1| peptide chain release factor 2 [Calothrix sp. PCC 7507]
Length = 370
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 178/319 (55%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D T++ + L +L + + E+ K + +L E+E D GL + A
Sbjct: 45 FWVDQTQAQQTLQELNNLKDHLAQYHQWHVSLEDTKAVVELLELET-DEGLLQEAESTIT 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LDQ+E+ +LL G D EGA +TI AG+ G + WA L+ MY RWA+ GY+
Sbjct: 104 KLNRELDQWELQQLLSGLYDAEGAVLTISAGAGGTDAQDWAFMLMRMYTRWAEAHGYKVT 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ ++ G+KSAT+E YA+GYL E G H L+ N + + + A V+V+P
Sbjct: 164 LAEESKGDEAGIKSATLEITGRYAYGYLRSEMGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFAN 241
++ S L I ++DL ++ G+ Q++ K ++ H+PTG+AV+ ER+ N
Sbjct: 224 Q-IDNSVQLDIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGLAVRCTEERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL RLKAKLLVI EQ ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 283 KEKALARLKAKLLVIAQEQRAQEIAEIRGDMVEASWGNQIRNYVFHPYQMVKDLRTNTET 342
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ V++G++ FI+A++
Sbjct: 343 TGISDVMNGDLDTFIQAYL 361
>gi|354565707|ref|ZP_08984881.1| Peptide chain release factor 2 [Fischerella sp. JSC-11]
gi|353548580|gb|EHC18025.1| Peptide chain release factor 2 [Fischerella sp. JSC-11]
Length = 372
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 179/322 (55%), Gaps = 13/322 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ L +L D + + + E+ K + +L E+E A
Sbjct: 45 FWEDQVKAQGTLQELNDLKAHLQQYEQWQSSLEDTKAVLELLELET----DEALLQEAEA 100
Query: 67 DVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
V+KL LDQ+E+ +LL GP D +GA +TI AG+ G + WAE LL MY RWA+ GY
Sbjct: 101 TVTKLNRELDQWELQQLLSGPYDDKGAVLTINAGAGGTDAQDWAEMLLRMYTRWAENHGY 160
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D+ G+KSATIE YA+GYL ETG H L+ N + + + A V+
Sbjct: 161 KVNLTDESEGDEAGIKSATIEITGRYAYGYLRSETGTHRLVRISPFNANGKRQTSFAGVE 220
Query: 182 VVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNH 238
V+P L+ S L+I ++DL ++ G+ Q++ K A I HIPTGIAV+ ER+
Sbjct: 221 VMPQ-LDNSVQLEIPEKDLEITTSRSGGKGGQNVNKVETAVRIVHIPTGIAVRCTEERSQ 279
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK KAL RLKAKLLVI EQ ++ I+ + + W + R YV HPY++V+D++T
Sbjct: 280 LQNKEKALARLKAKLLVIAQEQHAKEIAEIRGDMVEASWGNQIRNYVFHPYQMVKDLRTN 339
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ V++G + FI+A++
Sbjct: 340 VETTAIADVMNGELDMFIQAYL 361
>gi|119511140|ref|ZP_01630258.1| peptide chain release factor 2 [Nodularia spumigena CCY9414]
gi|119464235|gb|EAW45154.1| peptide chain release factor 2 [Nodularia spumigena CCY9414]
Length = 288
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 161/272 (59%), Gaps = 6/272 (2%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G + WA L+ M
Sbjct: 6 DEALLQEAESTVTKLNRELDQWELQQLLSGPYDAEGAVLTINAGAGGTDAQDWAFMLMRM 65
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y RWA+ GY+ + ++ G+KSAT+E YA+GYL ETG H L+ N +
Sbjct: 66 YTRWAEDHGYKVSLAEESEGDEAGIKSATLEITGRYAYGYLRSETGTHRLVRISPFNANG 125
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGI 228
+ + A V+++P L+ S L+I ++DL ++ G+ Q++ K A I H+PTGI
Sbjct: 126 KRQTSFAGVEIMPQ-LDHSVQLEIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGI 184
Query: 229 AVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHP 288
AV+ ER+ NK KAL RLKAKLLVI EQ V+ I+ + + W + R YV HP
Sbjct: 185 AVRCTEERSQLQNKDKALARLKAKLLVIAREQKAQEVAEIRGDMVEASWGNQIRNYVFHP 244
Query: 289 YKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
Y++V+D++T ++ + V+DG++ FI+A++
Sbjct: 245 YQMVKDLRTNVETTAISDVMDGDLDSFIQAYL 276
>gi|158336840|ref|YP_001518014.1| peptide chain release factor 2 [Acaryochloris marina MBIC11017]
gi|158307081|gb|ABW28698.1| peptide chain release factor 2 [Acaryochloris marina MBIC11017]
Length = 304
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 173/298 (58%), Gaps = 7/298 (2%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+ L+D + ++A+ + +L ++E D GL + A +++ LDQ+E+ +LL GP D
Sbjct: 1 MTQLQDWQGTLDDAEALVELLQLEE-DAGLLQEAAGNLRQLNQQLDQWELQQLLSGPYDK 59
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
GA +TI G+ G + WAE LL MY RW++++GY+ + + G+KSAT+E E
Sbjct: 60 VGAVLTINTGAGGTDAQDWAEMLLRMYTRWSERQGYKVHLAELSEGDEAGIKSATLEVEG 119
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSP 205
YA+GYL E G H L+ N + + + A ++V+P L+ +L I D DL ++
Sbjct: 120 RYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPQ-LDHEVELDIPDTDLEITTS 178
Query: 206 SLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGV 262
G+ Q++ K A I H+PTG+AV+ ER+ NK KA+ LKAKLLVI EQ
Sbjct: 179 RSGGKGGQNVNKVETAVRIVHVPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQKA 238
Query: 263 SNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
++ I+ +A+ W + R YV HPY++V+D++T + SV+DG + FIEA++
Sbjct: 239 KEIADIRGDAVEAAWGNQIRNYVFHPYQMVKDLRTNQETTAIESVMDGALDNFIEAYL 296
>gi|384249824|gb|EIE23305.1| peptide chain release factor 2 [Coccomyxa subellipsoidea C-169]
Length = 368
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 184/333 (55%), Gaps = 12/333 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + L ++++ +V ++ + + + +LAEMEA + L A
Sbjct: 38 FWEDQESAQATLQQMSELKGIVQEVEGFQGLLGDVQTAIELAEMEAGPFCL--EGVEALE 95
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K L ++E+ +LL G D A+++I+AG+ G WAE+L MY RWA+K+GY+ R
Sbjct: 96 RLQKGLARWELQRLLGGEYDKGSATLSIQAGAGGTDAMDWAEKLERMYTRWAEKQGYKTR 155
Query: 127 VVDKCCC-----KNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
+ C + GVKS +E YA+GYL+GE G H L+ N + + A
Sbjct: 156 SLSFLLCNVQSGEEAGVKSVEMEVHGRYAYGYLAGEKGTHRLVRQSPFNAKAARQTSFAA 215
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAAC--IQHIPTGIAVQSLGER 236
V+V+P+ E + ++I + DL ++ G Q++ K C I+HIPTGIAV+ +R
Sbjct: 216 VEVMPILGEKATQVEIPESDLEITTTRSQGAGGQNVNKLETCVRIKHIPTGIAVRCQQQR 275
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK A+ +LKAKL+V+ EQ ++ I+ + + W ++ R YV HPYKLV+DV+
Sbjct: 276 SQLQNKALAMEQLKAKLVVVQQEQQAREIAEIRGDIVKAEWGQQIRNYVFHPYKLVKDVR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
TG++ D V+DG+I F++A++ + T+
Sbjct: 336 TGMETSDVPGVMDGDIDQFVQAYLRHKGRLSTE 368
>gi|126657098|ref|ZP_01728269.1| peptide chain release factor 2 [Cyanothece sp. CCY0110]
gi|126621641|gb|EAZ92351.1| peptide chain release factor 2 [Cyanothece sp. CCY0110]
Length = 358
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 183/326 (56%), Gaps = 6/326 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L KL D + + + E+ + IA+L E+E D L + A
Sbjct: 33 FWDEPETAQKTLQKLNDLKSQLEQYQQWCEQLEDTEAIAELLELED-DTTLRREAQENIT 91
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 92 QLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKVN 151
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A V+V+P
Sbjct: 152 LTELSEGDEAGIKSATLEIEGCYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 211
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFAN 241
+ E + I D+DL S+ G+ Q++ K A I H+PTGIAV+ ER+ N
Sbjct: 212 MLEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVRIVHVPTGIAVRCTQERSQLQN 271
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 272 KEKALALLKAKLLIIAQEQRAQEIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNVET 331
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
D V+DGN+ FIEA++ SD
Sbjct: 332 TDVTGVMDGNLDSFIEAYLRYDTMSD 357
>gi|409993206|ref|ZP_11276356.1| peptide chain release factor 2 [Arthrospira platensis str. Paraca]
gi|409935920|gb|EKN77434.1| peptide chain release factor 2 [Arthrospira platensis str. Paraca]
Length = 309
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 6/294 (2%)
Query: 32 KDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGAS 91
+D R E+ IA+L E+E D L + A + + + +D++E+ +LL GP D GA
Sbjct: 5 QDWRKTLEDTGAIAELLELED-DESLRQEAESNVVHLGRDIDRWELQQLLSGPYDRSGAV 63
Query: 92 VTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAF 151
+TI AG+ G + WAE LL MY RW + +GY+ + + G+KSAT+E E YA+
Sbjct: 64 LTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAELSEGDEAGIKSATLEMEGPYAY 123
Query: 152 GYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPG 209
GYL E G H L+ N + + + A V+++P+ E + +L I ++DL ++ G
Sbjct: 124 GYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPILDEGAINLDIPEKDLEITTSRAGG 183
Query: 210 E-RQSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVS 266
+ Q++ K A I HIPTGIAV+ ER+ N+ KA+ LKAKLLV+ EQ ++
Sbjct: 184 KGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQNREKAMALLKAKLLVVAQEQRAQAIA 243
Query: 267 CIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
I+ + + W + R YV HPY++V+D++TG + N V++G + FI+A++
Sbjct: 244 EIRGDLVEAAWGNQIRNYVFHPYQMVKDLRTGEETTAINDVMNGELDGFIQAYL 297
>gi|359460154|ref|ZP_09248717.1| peptide chain release factor 2 [Acaryochloris sp. CCMEE 5410]
Length = 304
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 173/298 (58%), Gaps = 7/298 (2%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+ L+D + ++A+ + +L ++E D GL + A +++ LDQ+E+ +LL GP D
Sbjct: 1 MTQLQDWQGTLDDAEALVELLQLEE-DAGLLQEAAGNLEQLNQQLDQWELQQLLSGPYDK 59
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
GA +TI G+ G + WAE LL MY RW++++GY+ + + G+KSAT+E E
Sbjct: 60 VGAVLTINTGAGGTDAQDWAEMLLRMYTRWSERQGYKVHLAELSEGDEAGIKSATLEVEG 119
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSP 205
YA+GYL E G H L+ N + + + A ++V+P L+ +L I D DL ++
Sbjct: 120 RYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPQ-LDHEVELDIPDTDLEITTS 178
Query: 206 SLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGV 262
G+ Q++ K A I H+PTG+AV+ ER+ NK KA+ LKAKLLVI EQ
Sbjct: 179 RSGGKGGQNVNKVETAVRIVHVPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQKA 238
Query: 263 SNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
++ I+ +A+ W + R YV HPY++V+D++T + SV+DG + FIEA++
Sbjct: 239 KEIADIRGDAVEAAWGNQIRNYVFHPYQMVKDLRTNQETTAIESVMDGALDNFIEAYL 296
>gi|186681801|ref|YP_001864997.1| peptide chain release factor 2 [Nostoc punctiforme PCC 73102]
gi|186464253|gb|ACC80054.1| peptide chain release factor 2 [Nostoc punctiforme PCC 73102]
Length = 289
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 162/279 (58%), Gaps = 7/279 (2%)
Query: 47 LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIW 106
+ E+E D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G + W
Sbjct: 1 MLELET-DEALLQEAESTITKLNRDLDQWELQQLLSGPYDAEGAVLTISAGAGGTDAQDW 59
Query: 107 AEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF 166
A L+ MY RW + GY+ + ++ G+KSAT+E YA+GYL E G H L+
Sbjct: 60 AFMLMRMYTRWGEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRSEMGTHRLVRI 119
Query: 167 P--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACI 221
N + + + A V+V+P ++ S L+I D+DL ++ G+ Q++ K A I
Sbjct: 120 SPFNANGKRQTSFAGVEVMPQ-IDNSVQLEIPDKDLEITTTRSGGKGGQNVNKVETAVRI 178
Query: 222 QHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRET 281
HIPTG+AV+ ER+ NK KALNRLKAKLLVI EQ ++ I+ + + W +
Sbjct: 179 VHIPTGLAVRCTEERSQLQNKEKALNRLKAKLLVIAKEQRAQEIAEIRGDMVEASWGNQI 238
Query: 282 RRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
R YV HPY++V+D++T + V++G + PFI+A++
Sbjct: 239 RNYVFHPYQMVKDLRTNTETTAIGDVMNGELDPFIQAYL 277
>gi|254422250|ref|ZP_05035968.1| peptide chain release factor 2 [Synechococcus sp. PCC 7335]
gi|196189739|gb|EDX84703.1| peptide chain release factor 2 [Synechococcus sp. PCC 7335]
Length = 345
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 182/321 (56%), Gaps = 7/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D ++ ++ E+++ I +L ++E D L A
Sbjct: 16 DFWDEQESAQKSLQELNDYKANLDQVEGWSTSLEDSEAILELLDLEQ-DESLLLEAESTV 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK LDQ+E+ +LL GP D GA +TI AG+ G + W+E LL MY RW+++ GY+
Sbjct: 75 NRLSKELDQWELQQLLSGPYDKAGAVLTINAGAGGTDAQDWSEMLLRMYTRWSEQNGYQF 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++++K G+KS T+E YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 135 KLIEKSEGDEAGLKSVTMEVYGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 194
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ L+ +L I D+DL S G+ + + A I H+PT I+V+ ER+
Sbjct: 195 PI-LDQKVELDIPDKDLEIKTSRSGGAGGQNVNKVETAVRITHLPTSISVRCTQERSQLQ 253
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L +KLLVI EQ ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 254 NKEKAMALLTSKLLVIAQEQRTQAIADIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTSVE 313
Query: 301 LPDFNSVLDGNIKPFIEAHIN 321
+ V++G+++ FI+A+++
Sbjct: 314 TTAVDDVMNGDLEAFIQAYLH 334
>gi|87123562|ref|ZP_01079413.1| Peptide chain release factor 2 [Synechococcus sp. RS9917]
gi|86169282|gb|EAQ70538.1| Peptide chain release factor 2 [Synechococcus sp. RS9917]
Length = 356
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 175/318 (55%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L+ R ++A+ +L ++E D + A
Sbjct: 26 DFWDDQPNAQKQMRRLDEVKAQLQQLEQWRGAIDDAQATLELYDLEP-DDDMLSEAQEGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 TTLRHALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE + YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 SVDELSEGEEAGIKSATIEIDGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE D+ I D+DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 205 P-KLEDEVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQEE 323
Query: 301 LPDFNSVLDGNIKPFIEA 318
D V+DG++ PFI+A
Sbjct: 324 TTDVQGVMDGHLDPFIQA 341
>gi|449485390|ref|XP_004157153.1| PREDICTED: peptide chain release factor 2-like, partial [Cucumis
sativus]
Length = 237
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 145/225 (64%), Gaps = 5/225 (2%)
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WA+ LL MYVRW +K+ Y+ RVV+K + G+KSATIE E YA+GY+SGE G H ++
Sbjct: 6 WADMLLRMYVRWGEKQRYKTRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVR 65
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAAC 220
N + + + V+V+PL + S ++++ +EDL S G+ Q++ K A
Sbjct: 66 QSPFNSKGLRQTSFSGVEVMPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVR 125
Query: 221 IQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRE 280
I HIPTG+ V+ ER+ ANK+KAL+RLKAKLLVI EQ S + I+ +A+ W ++
Sbjct: 126 ITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQ 185
Query: 281 TRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
R YV HPYKLV+DV+TG + D SV+DG ++PFI+A++ + S
Sbjct: 186 IRNYVFHPYKLVKDVRTGYETSDIVSVMDGELEPFIKAYLKYKYS 230
>gi|428300612|ref|YP_007138918.1| peptide chain release factor 2 (bRF-2) [Calothrix sp. PCC 6303]
gi|428237156|gb|AFZ02946.1| bacterial peptide chain release factor 2 (bRF-2) [Calothrix sp. PCC
6303]
Length = 372
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 180/320 (56%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+D T++ + L +L D LKV ++ E+ + + +L E+E D GL + A
Sbjct: 45 FWNDQTEAQQTLREL-DELKVHLSQYHGWLSSVEDTRAVVELLELET-DEGLLEEATSTV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +++ LDQ+E+ +LL D GA +TI AG+ G + WAE LL MY RW + Y+
Sbjct: 103 IRLNRELDQWELEQLLSNEYDHLGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEDHNYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ G+KSATIE YA+GYL E G H L+ N + + + A V+V+
Sbjct: 163 HLIEISEGDEAGLKSATIEVTGRYAYGYLRSEMGTHRLVRISPFNANGKRQTSFAGVEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P +++S L I ++DL ++ G+ Q++ K ++ HIPTG+AV+ ER+
Sbjct: 223 PQ-IDSSVQLDIPEKDLDITTSRAGGKGGQNVNKVETAVRVVHIPTGVAVRCTEERSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL RLKAKLLVI EQ ++ I+ + + W + R YV HPY+LV+D++T ++
Sbjct: 282 NKEKALARLKAKLLVIAKEQRAKEIAEIRGDMVDASWGNQIRNYVFHPYQLVKDLRTNVE 341
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
V++G + FI+ ++
Sbjct: 342 TTAIGDVMNGELDQFIQTYL 361
>gi|17227769|ref|NP_484317.1| peptide chain release factor 2 [Nostoc sp. PCC 7120]
gi|17135251|dbj|BAB77797.1| peptide chain release factor [Nostoc sp. PCC 7120]
Length = 292
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +L E+E D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G
Sbjct: 1 MVELLELET-DEALLQEAESTITKLNRDLDQWELQQLLSGPYDAEGAVLTINAGAGGTDA 59
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WA LL MY RWA+ +GY+ + ++ G+KSAT+E YA+GYL ETG H L
Sbjct: 60 QDWAFMLLRMYTRWAEDQGYKVALAEESEGDEAGIKSATLEITGRYAYGYLRSETGTHRL 119
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAAC 220
+ N + + + A V+V+P L+ + L I D+DL ++ G+ Q++ K
Sbjct: 120 VRISPFNANGKRQTSFAGVEVMPQ-LDNTVQLDIPDKDLEITTTRSGGKGGQNVNKVETA 178
Query: 221 IQ--HIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQ 278
++ H+PTGIAV+ ER+ NK KAL RLKAKLLVI EQ ++ I+ + + W
Sbjct: 179 VRVVHLPTGIAVRCTEERSQLQNKEKALARLKAKLLVIAQEQKAQEIAQIRGDMVEASWG 238
Query: 279 RETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+ R YV HPY++V+D++T ++ V++G + FI++++
Sbjct: 239 NQIRNYVFHPYQMVKDLRTNVETTAIADVMNGELDMFIQSYL 280
>gi|88809865|ref|ZP_01125371.1| peptide chain release factor 2 [Synechococcus sp. WH 7805]
gi|88786249|gb|EAR17410.1| peptide chain release factor 2 [Synechococcus sp. WH 7805]
Length = 356
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 177/318 (55%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L+ + +A+ +L ++E D + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAMLQQLETWQGAVSDAQATLELYDLEP-DEDMLGEAQGGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 NQLRRDLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDRGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE D+ I D+DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQEE 323
Query: 301 LPDFNSVLDGNIKPFIEA 318
D V+DG+++PFI+A
Sbjct: 324 TNDVQGVMDGDLEPFIQA 341
>gi|148243347|ref|YP_001228504.1| peptide chain release factor 2, partial [Synechococcus sp. RCC307]
gi|147851657|emb|CAK29151.1| Protein chain release factor B [Synechococcus sp. RCC307]
Length = 349
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 175/318 (55%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L D + L+ R ++A +L ++E D L + A
Sbjct: 20 DFWDDQNNARKQMRQLDDVKAQLEQLRTWRASVDDAAATLELYDLEP-DDALLEEANGGL 78
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 79 QELRLALDRWELERLLSGTYDQEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDRGMKV 138
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 139 TVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 198
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE DL+I D+DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 199 P-KLEEEVDLEIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 257
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LK+KLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 258 NKEKAMALLKSKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTNEE 317
Query: 301 LPDFNSVLDGNIKPFIEA 318
D V+DG++ PFI++
Sbjct: 318 TTDVQGVMDGDLDPFIQS 335
>gi|75908996|ref|YP_323292.1| peptide chain release factor 2 [Anabaena variabilis ATCC 29413]
gi|75702721|gb|ABA22397.1| bacterial peptide chain release factor 2 (bRF-2) [Anabaena
variabilis ATCC 29413]
Length = 292
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 164/282 (58%), Gaps = 7/282 (2%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +L E+E D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G
Sbjct: 1 MVELLELET-DEALLQEAESTITKLNRDLDQWELQQLLSGPYDAEGAVLTINAGAGGTDA 59
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WA LL MY RWA+ +GY+ + ++ G+KSAT+E YA+GYL ETG H L
Sbjct: 60 QDWAFMLLRMYTRWAEDQGYKVALAEESEGDEAGIKSATLEITGRYAYGYLRSETGTHRL 119
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAAC 220
+ N + + + A V+V+P L+ + L I D+DL ++ G+ Q++ K
Sbjct: 120 VRISPFNANGKRQTSFAGVEVMPQ-LDNTVQLDIPDKDLEITTTRSGGKGGQNVNKVETA 178
Query: 221 IQ--HIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQ 278
++ H+PTGIAV+ ER+ NK KAL RLKAKLLVI EQ ++ I+ + + W
Sbjct: 179 VRVVHLPTGIAVRCTEERSQLQNKEKALARLKAKLLVIAQEQKAQEIAQIRGDMVEASWG 238
Query: 279 RETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+ R YV HPY++V+D++T + V++G + FI+A++
Sbjct: 239 NQIRNYVFHPYQMVKDLRTNAETTAIADVMNGELDMFIQAYL 280
>gi|148240661|ref|YP_001226048.1| peptide chain release factor 2 [Synechococcus sp. WH 7803]
gi|147849200|emb|CAK24751.1| Protein chain release factor B [Synechococcus sp. WH 7803]
Length = 356
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 175/318 (55%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L + +A+ +L ++E D + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAMLQQLDTWQGAVSDAQATLELYDLEP-DDDMLGEAQSGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 TQLRRDLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDRGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE D+ I D+DL + S G+ + + A I H+PTG+AV+ ER+
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQEE 323
Query: 301 LPDFNSVLDGNIKPFIEA 318
D V+DG++ PFI+A
Sbjct: 324 TNDVQGVMDGDLDPFIQA 341
>gi|218439666|ref|YP_002377995.1| peptide chain release factor 2 [Cyanothece sp. PCC 7424]
gi|218172394|gb|ACK71127.1| peptide chain release factor 2 [Cyanothece sp. PCC 7424]
Length = 360
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 183/319 (57%), Gaps = 6/319 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD P + L +L + + + + + E+AK I++L E+E D L + A
Sbjct: 36 FWDSPETAQSTLQELNELKSSLELYQQWQTQLEDAKAISELLELEE-DTSLLQEAQTNLQ 94
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ L+++E+ +LL GP D +G +TI AG+ G + WA LL MY RW +K GY+
Sbjct: 95 QLNHELERWELQQLLSGPYDAKGVLLTINAGAGGTDAQDWAAMLLRMYTRWGEKRGYKVH 154
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+V+ G+KSAT+E E YA+GYL GE G H L+ N + + + A V+++P
Sbjct: 155 LVESSEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEIMP 214
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFAN 241
E + +++I ++DL ++ G+ Q++ K ++ H+PTGIAV+ ER+ N
Sbjct: 215 NIEEEALNVEIPEKDLEITTSRAGGKGGQNVNKVETAVRVVHLPTGIAVRCTEERSQLQN 274
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLLVI EQ ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 275 KEKALALLKAKLLVIAVEQRAQEIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNVET 334
Query: 302 PDFNSVLDGNIKPFIEAHI 320
D +V+DG++ FIEA++
Sbjct: 335 SDIGAVMDGDLDAFIEAYL 353
>gi|195611870|gb|ACG27765.1| peptide chain release factor 2 [Zea mays]
Length = 262
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 125/164 (76%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 82 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 142 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI 164
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I
Sbjct: 202 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMI 245
>gi|413945157|gb|AFW77806.1| hypothetical protein ZEAMMB73_793358, partial [Zea mays]
Length = 265
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 125/164 (76%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 85 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 144
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 145 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 204
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI 164
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I
Sbjct: 205 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMI 248
>gi|219362723|ref|NP_001136772.1| peptide chain release factor 2 [Zea mays]
gi|194697000|gb|ACF82584.1| unknown [Zea mays]
gi|413945158|gb|AFW77807.1| peptide chain release factor 2 [Zea mays]
Length = 262
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 125/164 (76%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 82 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 142 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI 164
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I
Sbjct: 202 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMI 245
>gi|352095544|ref|ZP_08956558.1| Peptide chain release factor 2 [Synechococcus sp. WH 8016]
gi|351678686|gb|EHA61831.1| Peptide chain release factor 2 [Synechococcus sp. WH 8016]
Length = 356
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 180/332 (54%), Gaps = 10/332 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++ + +L E+E D L A +
Sbjct: 26 DFWNDQQNAQKQMRRLDEVKAQLQQLVDWRGAIDDGQATLELYELEP-DEDLLGEAQQGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ +G
Sbjct: 85 NRLRQALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDQGMSV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVNELSEGEEAGIKSTTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ DL I ++DL + S G+ + + A I H+PTG+AV+ ER+
Sbjct: 205 P-KLDEEVDLDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQEE 323
Query: 301 LPDFNSVLDGNIKPFIEAHINS---RRSSDTD 329
D V+DG++ PFI+A + R SD D
Sbjct: 324 TTDVQGVMDGDLNPFIQALLRQGVDRPGSDDD 355
>gi|254432093|ref|ZP_05045796.1| peptide chain release factor 2 [Cyanobium sp. PCC 7001]
gi|197626546|gb|EDY39105.1| peptide chain release factor 2 [Cyanobium sp. PCC 7001]
Length = 358
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 175/322 (54%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L D + L+ + +A+ +L E+E D L + A
Sbjct: 26 DFWDDQQAAQKQMRQLDDVKAQLEQLERWKAAVSDAEATLELHELEP-DGDLLEEANAGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D EGA +TI AG+ G + WA+ LL MY RWA+ G
Sbjct: 85 TSLRGDLDRWELERLLSGPYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMTV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 SVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E L I D+DL + S G+ + + A I HIPTG+ V+ ER+
Sbjct: 205 P-KIEEEVKLDIPDKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ + ++ I+ + + W + R YV HPY+LV+D++T +
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQLVKDLRTQHE 323
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
D V+DG++ PFI++ +++
Sbjct: 324 TTDVQGVMDGDLDPFIQSLLHA 345
>gi|282900531|ref|ZP_06308475.1| Peptide chain release factor 2 [Cylindrospermopsis raciborskii
CS-505]
gi|281194584|gb|EFA69537.1| Peptide chain release factor 2 [Cylindrospermopsis raciborskii
CS-505]
Length = 291
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 166/282 (58%), Gaps = 7/282 (2%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +L E+EA D GL + A + + LDQ+E+ +LL GP D +GA +TI AG+ G
Sbjct: 1 MVELLELEA-DEGLLQEAETTINQMHRDLDQWELQQLLSGPYDSQGAVLTINAGAGGTDA 59
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WA L+ MY RWA+ GY+ + ++ G+KSAT+E YA+GYL E G H L
Sbjct: 60 QDWAFMLMRMYTRWAEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRAEMGTHRL 119
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PA 218
+ N + + + A V+V+P ++ S L+I ++DL ++ G+ Q++ K A
Sbjct: 120 VRISPFNANGKRQTSFAGVEVMPQ-IDNSVTLEIPEKDLEITTSRAGGKGGQNVNKVETA 178
Query: 219 ACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQ 278
I HIPTG+AV+ ER+ NK KAL RLKAKLLVI EQ ++ I+ + + W
Sbjct: 179 VRIVHIPTGVAVRCTEERSQLQNKEKALARLKAKLLVIAREQRAQEIAEIRGDMVEASWG 238
Query: 279 RETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+ R YV HPY++V+D++T ++ V++G++ FI+A++
Sbjct: 239 NQIRNYVFHPYQIVKDLRTNLETTAIGDVMNGDLDNFIQAYL 280
>gi|220910508|ref|YP_002485819.1| peptide chain release factor 2 [Cyanothece sp. PCC 7425]
gi|219867119|gb|ACL47458.1| peptide chain release factor 2 [Cyanothece sp. PCC 7425]
Length = 361
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 175/320 (54%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD + L +L + + L + +A +L E+E D L + A
Sbjct: 35 NFWDDQATAQVTLQELNELKSHLEQLHRWQATLSDAVAALELVELEP-DESLLQEASDNL 93
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L Q+E+ +LL G D GA +TI AG+ G + WAE LL MY RWA++ GY+
Sbjct: 94 KQLDQQLSQWELEQLLSGTYDRNGAVLTINAGAGGTDAQDWAEMLLRMYTRWAEQHGYKV 153
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E + YA+GYL E G H L+ N + + + A V+V+
Sbjct: 154 HLAELSEGDEAGIKSATLEIDGRYAYGYLRSEKGTHRLVRISPFNANGKRQTSFAGVEVM 213
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
P L+ S L+I D+DL ++ G+ Q++ K A I H+PTG+AV+ ER+
Sbjct: 214 PQ-LDHSVQLEIPDKDLEITTSRSGGKGGQNVNKVETAVRIVHLPTGLAVRCTQERSQLQ 272
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ +A+ W + R YV PYKLV+DV+TG++
Sbjct: 273 NKEKALAILKAKLLIIAQEQKAQEIADIRGDAVEAAWGTQIRNYVFDPYKLVKDVRTGVE 332
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
V++G + FI+A++
Sbjct: 333 TQAIEVVMNGELDEFIQAYL 352
>gi|443327861|ref|ZP_21056468.1| peptide chain release factor 2 [Xenococcus sp. PCC 7305]
gi|442792472|gb|ELS01952.1| peptide chain release factor 2 [Xenococcus sp. PCC 7305]
Length = 314
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 175/287 (60%), Gaps = 6/287 (2%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
++A+ IA+L E+E D L + A + + + + LD +E+ +LL G D GA +TI AG+
Sbjct: 22 DDAQAIAELLELET-DQALAEEAQTSLIQLKQELDLWELQQLLSGTYDSRGAILTINAGA 80
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WAE LL MY RW +K+GY+ R+V++ G+KSAT+E E YA+GYL E
Sbjct: 81 GGTDAQDWAEMLLRMYTRWGEKQGYKVRLVEESAGDEAGIKSATLEIEGRYAYGYLKAEK 140
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIA 215
G H L+ N + + + A ++V+P + S +L+I ++DL ++ G+ Q++
Sbjct: 141 GTHRLVRISPFNANGKRQTSFAGIEVMPNLGDESIELEIPEKDLEITTSRAGGKGGQNVN 200
Query: 216 K--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAI 273
K A I H+PTG+AV+ ER+ NK KAL LKAKLLV+V EQ V+ I+ + +
Sbjct: 201 KVETAVRIVHLPTGLAVRCTQERSQLQNKEKALALLKAKLLVVVEEQRAQQVAEIRGDMV 260
Query: 274 VNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
W + R YV HPY++V+D++T + D N V+DGN+ PFIEA++
Sbjct: 261 EAAWGNQIRNYVFHPYQMVKDLRTELDTGDINDVMDGNLNPFIEAYL 307
>gi|113953765|ref|YP_731847.1| peptide chain release factor 2 [Synechococcus sp. CC9311]
gi|113881116|gb|ABI46074.1| peptide chain release factor 2, programmed frameshift
[Synechococcus sp. CC9311]
Length = 375
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 180/332 (54%), Gaps = 10/332 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++ + +L E+E D L A +
Sbjct: 45 DFWNDQQNAQKQMRRLDEVKAQLQQLVDWRGAIDDGQATLELHELEP-DEDLLGEAQQGL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ +G
Sbjct: 104 NQLRQALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDQGMSV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 164 SVNELSEGEEAGIKSTTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 223
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ +L I ++DL + S G+ + + A I H+PTG+AV+ ER+
Sbjct: 224 P-KLDEEVELDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCTQERSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 283 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQEE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINS---RRSSDTD 329
D V+DG++ PFI+A + R SD D
Sbjct: 343 TTDVQGVMDGDLNPFIQALLRQGVDRPGSDDD 374
>gi|33866841|ref|NP_898400.1| peptide chain release factor 2 [Synechococcus sp. WH 8102]
gi|81573750|sp|Q7U3W6.1|RF2_SYNPX RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|33639442|emb|CAE08826.1| peptide chain release factor RF-2 [Synechococcus sp. WH 8102]
Length = 374
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 175/320 (54%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L D ++AK +L E+E D + A
Sbjct: 44 DFWDDQQAAQKQMRRLDEVKAQLQQLADWGGAVDDAKATLELYELEP-DEEMLTEAQEGL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA +TI AG+ G + WA+ LL MY RWA+ G +
Sbjct: 103 NQLRQGLDRWELERLLSGDYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 163 TVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D+ I ++DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 223 P-KIDEEVDIDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 282 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTSEE 341
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D +V+DG + PFI+A +
Sbjct: 342 TNDVQAVMDGALDPFIDASL 361
>gi|282898121|ref|ZP_06306116.1| Peptide chain release factor 2 [Raphidiopsis brookii D9]
gi|281197265|gb|EFA72166.1| Peptide chain release factor 2 [Raphidiopsis brookii D9]
Length = 290
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 165/280 (58%), Gaps = 7/280 (2%)
Query: 46 QLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEI 105
+L E+EA D GL + A + + LDQ+E+ +LL GP D +GA +TI AG+ G +
Sbjct: 2 ELLELEA-DEGLLQEAETTINQMHRDLDQWELQQLLSGPYDSQGAVLTINAGAGGTDAQD 60
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WA L+ MY RWA+ GY+ + ++ G+KSAT+E YA+GYL E G H L+
Sbjct: 61 WAFMLMRMYTRWAEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRAEMGTHRLVR 120
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAAC 220
N + + + A V+V+P ++ S L+I ++DL ++ G+ Q++ K A
Sbjct: 121 ISPFNANGKRQTSFAGVEVMPQ-IDNSVTLEIPEKDLEVTTSRAGGKGGQNVNKVETAVR 179
Query: 221 IQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRE 280
I HIPTGIAV+ ER+ NK KAL RLKAKLLVI EQ ++ I+ + + W +
Sbjct: 180 IVHIPTGIAVRCTEERSQLQNKEKALARLKAKLLVIAREQRAQEIAEIRGDMVEASWGNQ 239
Query: 281 TRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
R YV HPY++V+D++T ++ V++G++ FI+A++
Sbjct: 240 IRNYVFHPYQIVKDLRTNLETTAIIDVMNGDLDNFIQAYL 279
>gi|87300848|ref|ZP_01083690.1| peptide chain release factor 2 [Synechococcus sp. WH 5701]
gi|87284719|gb|EAQ76671.1| peptide chain release factor 2 [Synechococcus sp. WH 5701]
Length = 355
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 174/318 (54%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ + + +L + + L+ R ++A+ +L ++E D L A
Sbjct: 26 DFWDDQQQAQKQMRQLDEVKAQLEQLQQWRTAVDDARATLELYDLEP-DEELLSEANGGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 QSLKAALDRWELERLLSGPYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE + YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 SVDELSEGEEAGIKSCTIEIDGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE L I D+DL + S G+ + + A I H+PTG+AV+ ER+
Sbjct: 205 P-KLEEDVKLDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ S ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRASEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTAVE 323
Query: 301 LPDFNSVLDGNIKPFIEA 318
D V+DG++ PFI+A
Sbjct: 324 TTDVQGVMDGDLDPFIQA 341
>gi|416376039|ref|ZP_11683417.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 0003]
gi|357266445|gb|EHJ15072.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 0003]
Length = 358
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 180/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD P + L +L D + + + ++ K IA+L E+E D L + A
Sbjct: 32 QFWDQPETAQTTLQELNDLKSQLEQYQQWCLQLDDTKAIAELLELED-DATLRQEAEDNI 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 91 IQLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKV 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A ++++
Sbjct: 151 HLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEIM 210
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P E + I D+DL S+ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 211 PALEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVRVVHVPTGIAVRCTQERSQLQ 270
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T I+
Sbjct: 271 NKEKALALLKAKLLIIAEEQRAQEIAEIRGDIVEAAWGTQIRNYVFHPYQMVKDLRTNIE 330
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D N V+DG++ FIEA++
Sbjct: 331 TTDVNGVMDGSLDEFIEAYL 350
>gi|22298070|ref|NP_681317.1| peptide chain release factor 2 [Thermosynechococcus elongatus BP-1]
gi|22294248|dbj|BAC08079.1| peptide chain release factor 2 [Thermosynechococcus elongatus BP-1]
Length = 290
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 154/260 (59%), Gaps = 6/260 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
L+++E+ +LL GP D A VTI AG+ G + WAE LL MY RWA++ GY+ + +
Sbjct: 31 LNRWELEQLLSGPYDKNNAIVTINAGAGGTDAQDWAEMLLRMYTRWAERHGYQTHLAELS 90
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KSAT+E YA+GYL E G H L+ N + + + A VDV+P L+
Sbjct: 91 EGEEAGIKSATLEIRGRYAYGYLRSEKGTHRLVRISPFNANGKRQTSFAGVDVMP-ELDQ 149
Query: 190 SPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKAL 246
S ++I + DL ++ G+ Q++ K A I H PTG+AV+ ER+ NK KAL
Sbjct: 150 SVTVEIPESDLEITTSRSGGKGGQNVNKVETAVRIVHKPTGLAVRCTQERSQLQNKEKAL 209
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LKAKLLVI EQ ++ I+ EA+ W + R YV HPY+LV+D++T ++
Sbjct: 210 AILKAKLLVIAQEQKAKEIADIRGEAVEAAWGNQIRNYVFHPYQLVKDLRTEVETTAIQD 269
Query: 307 VLDGNIKPFIEAHINSRRSS 326
V+DGN+ PFI+A++ + ++
Sbjct: 270 VMDGNLDPFIQAYLRQQTAA 289
>gi|67920292|ref|ZP_00513812.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 8501]
gi|67857776|gb|EAM53015.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 8501]
Length = 358
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 180/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD P + L +L D + + + ++ K IA+L E+E D L + A
Sbjct: 32 QFWDQPETAQTTLQELNDLKSQLEQYQQWCLQLDDTKAIAELLELED-DATLRQEAEDNI 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 91 IQLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKV 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A ++++
Sbjct: 151 HLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEIM 210
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P E + I D+DL S+ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 211 PALEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVRVVHVPTGIAVRCTQERSQLQ 270
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T I+
Sbjct: 271 NKEKALALLKAKLLIIAEEQRAQEIAEIRGDIVEAAWGTQIRNYVFHPYQMVKDLRTNIE 330
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D N V+DG++ FIEA++
Sbjct: 331 TTDVNGVMDGSLDEFIEAYL 350
>gi|218196675|gb|EEC79102.1| hypothetical protein OsI_19734 [Oryza sativa Indica Group]
gi|222631381|gb|EEE63513.1| hypothetical protein OsJ_18329 [Oryza sativa Japonica Group]
Length = 214
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 136/213 (63%), Gaps = 3/213 (1%)
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY WA K+G + +V+K +G V +A IE E EY FG L+GE G H +I +P + +
Sbjct: 1 MYSSWARKQGCKDGLVEKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMI-YPSVDNA 59
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+EAT A VD++PLFL+ +L + + DL S +R+ A +QHI TG+
Sbjct: 60 GTYEATSARVDIIPLFLDRPVNLHLDENDLEISPSPSDHKRRDHRNSAIRVQHIRTGVTA 119
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
+S GER++FANKMKA++RLKAKLLVI E SN+ IKR+ + ++ RETRRY P K
Sbjct: 120 ESSGERSYFANKMKAISRLKAKLLVISRELRSSNLKTIKRQTVEELYSRETRRYKFGPQK 179
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
LV D+ TG+QL + NSVLDG+I PFI I SR
Sbjct: 180 LVHDLNTGLQLSELNSVLDGDIDPFIRGRIVSR 212
>gi|334118073|ref|ZP_08492163.1| peptide chain release factor 2 [Microcoleus vaginatus FGP-2]
gi|333460058|gb|EGK88668.1| peptide chain release factor 2 [Microcoleus vaginatus FGP-2]
Length = 377
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 188/319 (58%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ E L +L D + + + E+AK I +L E+EA D LF+ A +
Sbjct: 45 FWDDQDRAQETLQELNDLKSHLEQYSNWQTSLEDAKAILELLELEA-DESLFQEASSSLS 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LDQ+E+ +LL GP D GA +TI AG+ G + WAE LL MY RW + +GY+
Sbjct: 104 QLTRELDQWELQQLLSGPYDEGGAVLTINAGAGGTDAQDWAEMLLRMYTRWGESQGYKVH 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+++ + GVKSA++E YA+GY+ E G H L+ N + + + A V+V+P
Sbjct: 164 LMEISEGEEAGVKSASLEIVGRYAYGYMRSEKGTHRLVRISPFNANDKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFAN 241
+ L+ S L I ++DL ++ G+ Q++ K A I H+PTG+AV+ ER+ N
Sbjct: 224 I-LDRSVQLDIPEKDLEVTTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCTEERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKA+LLVI EQ S ++ I+ + + W ++ R YV HPY++V+D++TG++
Sbjct: 283 KEKALALLKARLLVIAKEQRASEIAEIRGDMVEAAWGQQIRNYVFHPYQMVKDLRTGVET 342
Query: 302 PDFNSVLDGNIKPFIEAHI 320
V++G + PFI+A++
Sbjct: 343 TAIADVMNGELDPFIQAYL 361
>gi|443311195|ref|ZP_21040827.1| peptide chain release factor 2 [Synechocystis sp. PCC 7509]
gi|442778725|gb|ELR88986.1| peptide chain release factor 2 [Synechocystis sp. PCC 7509]
Length = 361
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 175/319 (54%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++ + + L +L + + E+ K + +L E+E D GL A
Sbjct: 36 FWENQEAAQKTLQELGSLKDHYSQYHQWQASLEDTKAVVELLELEN-DEGLLTEAQTNVR 94
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD +E+ +LL G D +GA +TI AG+ G + WAE LL MY RWA+++GY+
Sbjct: 95 HLHKELDGWELQQLLSGTYDEKGAVLTINAGAGGTDAQDWAEMLLRMYTRWAEEQGYKVT 154
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSATIE YA+GYL E G H L+ N + + + A V+++P
Sbjct: 155 LEEISQGDEAGLKSATIEIAGRYAYGYLRSEKGTHRLVRISPFNANDKRQTSFAGVEIMP 214
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFAN 241
L ++ S L I ++DL ++ G+ Q++ K A I HIPTG+AV+ ER+ N
Sbjct: 215 L-IDNSVHLDIPEKDLEITTTRAGGKGGQNVNKVETAVRIVHIPTGVAVRCTQERSQLQN 273
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 274 KEKALAILKAKLLIIAEEQRAQEIAEIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTNVET 333
Query: 302 PDFNSVLDGNIKPFIEAHI 320
V++G I FI+A++
Sbjct: 334 TAVTDVMNGEIDLFIQAYL 352
>gi|159902739|ref|YP_001550083.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9211]
gi|159887915|gb|ABX08129.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9211]
Length = 356
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 176/317 (55%), Gaps = 7/317 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ + + +L + + L D E+A++ +L E+E D + A +
Sbjct: 27 FWNDQQKAKKEMRRLDEVKAQLKKLVDWDAAIEDAQVSLELYELEPDDE-MLAEAIKGLD 85
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD +E+ +LL G D EG ++I AG+ G + WA+ LL MY RWAD G +
Sbjct: 86 NLKSDLDLWELERLLSGQYDKEGVVLSINAGAGGTDAQDWAQMLLRMYTRWADDHGMKVT 145
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V + + G+KSAT+E + YA+GYL E G H L+ N + + + A V+++P
Sbjct: 146 VDELSEGEEAGIKSATLEIDGRYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGVEIMP 205
Query: 185 LFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
LE +L I ++DL + S G+ + + A I H+P+G+AV+ ER+ N
Sbjct: 206 -KLEEEVELDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGLAVRCTQERSQLQN 264
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKL++I EQ S ++ I+ + + W + R YV HPY++V+D++TG +
Sbjct: 265 KEKAMALLKAKLMIIAQEQRASQIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTGKES 324
Query: 302 PDFNSVLDGNIKPFIEA 318
D V++G++ PFI+A
Sbjct: 325 TDVEGVMNGDLDPFIQA 341
>gi|37520802|ref|NP_924179.1| peptide chain release factor 2 [Gloeobacter violaceus PCC 7421]
gi|35211797|dbj|BAC89174.1| peptide chain release factor [Gloeobacter violaceus PCC 7421]
Length = 354
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 177/320 (55%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + L L + + + R +A+++ +L + E D L A
Sbjct: 31 DFWDDQAAAQKALQNLNNLKQPLEQFGRWRNLLSDAEVVLELVQ-ETGDESLLPEAEGNI 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D GA ++I AG+ G + WAE LL MY RWA+++GY+
Sbjct: 90 EALVGELDRWELEQLLSGPYDERGAILSINAGAGGTDAQDWAEMLLRMYTRWAERQGYQA 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + GVKSAT+E + YA+GYLS E G H L+ N + + + A V+V+
Sbjct: 150 HLLELSEGEEAGVKSATLEIDGRYAYGYLSAEKGTHRLVRISPFNANDKRQTSFAGVEVM 209
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ L+ S + I +D+ F S G+ + + + H PTGI+V+ ER
Sbjct: 210 PV-LDDSVQVDIRPDDIEIDTFRSGGKGGQNVNKVETGVRVTHKPTGISVRCTQERAQLQ 268
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KA+ LKA+LLV+ E+ ++S I+ EA+ W + R YV HPY++V+D++T +
Sbjct: 269 NRNKAMEMLKARLLVLEEEKRQQHLSDIRGEAVDAAWGNQIRSYVFHPYQMVKDLRTEEE 328
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G I+PFIE ++
Sbjct: 329 TSDVTGVMNGKIEPFIERYL 348
>gi|221633612|ref|YP_002522838.1| peptide chain release factor 2, programmed frameshift
[Thermomicrobium roseum DSM 5159]
gi|254790922|sp|B9L0E3.1|RF2_THERP RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|221155396|gb|ACM04523.1| peptide chain release factor 2, programmed frameshift
[Thermomicrobium roseum DSM 5159]
Length = 374
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 176/323 (54%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW DP ++ +L +L+ +V + L +++A+ + +L + + D L + + +
Sbjct: 43 DLWQDPQRAQSLLRRLSQLRDLVQEWETL---SQQARDLLELRALASDDLELAGQVEQEA 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++++ + Q E+ LL G D A + + AG+ G+ + WAE LL MY+RWA + G+
Sbjct: 100 TELAERVRQLELRLLLTGQYDGHDAILAVHAGTGGVDAQDWAEMLLRMYLRWAQRAGFAA 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VVD + G+KSAT+E YA+GYL GE G H L+ + + + A V+V+
Sbjct: 160 EVVDLLEGEEAGIKSATVEVRGPYAYGYLKGEAGTHRLVRLSPFDAAHRRHTSFALVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E D++I +ED+ F + G+ + + A I H+PTGI V ER+
Sbjct: 220 PL-VEEDDDVEIREEDIRIDTFRASGHGGQHVNKTESAVRITHLPTGIVVTCQNERSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKA+LL + Q + +K + +V W R YV HPY +V D +T +
Sbjct: 279 NRETAMKILKARLLELKIRQRQEEQARLKGKPVVTGWGNRIRSYVLHPYTMVTDHRTEVS 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
P+ +VL+G I PFIEA+++ +
Sbjct: 339 TPNIQAVLEGEIDPFIEAYLHQQ 361
>gi|33239657|ref|NP_874599.1| peptide chain release factor 2 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237182|gb|AAP99251.1| Protein chain release factor B [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 356
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 178/318 (55%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K+ + + +L + + L + E+AK+ +L E+E D + + A
Sbjct: 26 DFWNDQQKARKQMRQLDEVKDQLTKLANWNAAIEDAKVSLELYELEP-DNEMIEEAQIGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD +E+ +LL GP D EGA + I AG+ G + WA+ LL MY+RWA+ G +
Sbjct: 85 CQLKTELDLWELERLLSGPYDKEGAVLAINAGAGGTDAQDWAQMLLRMYMRWAESHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KSATIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 145 ILSELSEGEEAGIKSATIEIEGRYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGIEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE L+I ++DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 205 PQ-LEEDVHLEIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL++I EQ + ++ I+ + + W + R YV HPY++V+D+++G +
Sbjct: 264 NKEKAMALLKAKLMIIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRSGTE 323
Query: 301 LPDFNSVLDGNIKPFIEA 318
D SV++G++ FI++
Sbjct: 324 SNDVESVMNGDLDLFIQS 341
>gi|307155327|ref|YP_003890711.1| hypothetical protein Cyan7822_5564 [Cyanothece sp. PCC 7822]
gi|306985555|gb|ADN17436.1| hypothetical protein Cyan7822_5564 [Cyanothece sp. PCC 7822]
Length = 370
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 183/319 (57%), Gaps = 6/319 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD P + L +L + + + + + E+AK I +L E+E D L + A
Sbjct: 45 FWDSPDMAQTTLQELNELKSALELYQQWQTQLEDAKAIVELLELEE-DTSLLEEAQTNLE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ L+++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +K+GY+
Sbjct: 104 QLNHELERWELQQLLSGLYDAKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEKQGYKVH 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 164 LAEISEGDEAGLKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFAN 241
+ +++I ++DL ++ G+ Q++ K ++ HIPTG+AV+ ER+ N
Sbjct: 224 NLGVEAVNVEIPEKDLEITTSRSGGKGGQNVNKVETAVRVVHIPTGLAVRCTQERSQLQN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLLVI+ EQ ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 284 KEKALALLKAKLLVILTEQRAKEIAQIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNVET 343
Query: 302 PDFNSVLDGNIKPFIEAHI 320
D +V+DG++ FIEA++
Sbjct: 344 SDVGAVMDGDLNGFIEAYL 362
>gi|218248175|ref|YP_002373546.1| hypothetical protein PCC8801_3422 [Cyanothece sp. PCC 8801]
gi|226739124|sp|B7K0A6.1|RF2_CYAP8 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|218168653|gb|ACK67390.1| hypothetical protein PCC8801_3422 [Cyanothece sp. PCC 8801]
Length = 365
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 180/322 (55%), Gaps = 6/322 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D V + E+ K IA+L E+E D L + A
Sbjct: 44 DFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE-DATLNEEAEANL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +++GY+
Sbjct: 103 TQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A ++V+
Sbjct: 163 HLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P E ++I ++DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 223 PALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+DV+T +
Sbjct: 283 NKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDVRTNTE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
D N V+DG + FIE+++ S
Sbjct: 343 TTDVNGVMDGKLDLFIESYLRS 364
>gi|257060501|ref|YP_003138389.1| hypothetical protein Cyan8802_2694 [Cyanothece sp. PCC 8802]
gi|256590667|gb|ACV01554.1| hypothetical protein Cyan8802_2694 [Cyanothece sp. PCC 8802]
Length = 375
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 180/322 (55%), Gaps = 6/322 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D V + E+ K IA+L E+E D L + A
Sbjct: 54 DFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE-DATLNEEAEANL 112
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +++GY+
Sbjct: 113 TQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKV 172
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A ++V+
Sbjct: 173 HLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEVM 232
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P E ++I ++DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 233 PALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 292
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+DV+T +
Sbjct: 293 NKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDVRTNTE 352
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
D N V+DG + FIE+++ S
Sbjct: 353 TTDVNGVMDGKLDLFIESYLRS 374
>gi|425457642|ref|ZP_18837341.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9807]
gi|389800946|emb|CCI19823.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9807]
Length = 330
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 181/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNPDTAQKTLQELNECKSYLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTGVMNGDLDSFIEAYL 324
>gi|422303193|ref|ZP_16390547.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9806]
gi|425438279|ref|ZP_18818684.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9432]
gi|389676584|emb|CCH94420.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9432]
gi|389791881|emb|CCI12350.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9806]
Length = 336
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 181/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTGVMNGDLDSFIEAYL 324
>gi|308804958|ref|XP_003079791.1| putative translation releasing factor2 (ISS) [Ostreococcus tauri]
gi|116058248|emb|CAL53437.1| putative translation releasing factor2 (ISS) [Ostreococcus tauri]
Length = 419
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 182/330 (55%), Gaps = 9/330 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D K+ V+ +LA + ++A + +AK +LAE+ D + + A
Sbjct: 88 DLWEDANKARVVMAELAGVREELDAARAFEEHVSDAKTALELAEVGESDNEMSEMLCEAM 147
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
V L L+Q+E+ +LL G D GA V I AG+ G+ + W E L MY+ W +K G
Sbjct: 148 ASVEALDEALEQWELRRLLGGKYDALGAVVQIYAGAGGLDAQDWTEMLERMYIGWCEKRG 207
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y RV ++ + GG+K+AT+E + +A+GYLS E G H L+ N + + A V
Sbjct: 208 YGVRVTERQEGEGGGLKTATLEVDGRHAYGYLSSEKGTHRLVRQSPFNKDAARQTSFAAV 267
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
DV+PL L+ ++++ + DL S G+ + + A I+H+PTGI+V++ R
Sbjct: 268 DVIPL-LQDEDEVKVPEGDLEITTMRSSGAGGQNVNKLETAVRIKHVPTGISVKAEEHRT 326
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ R+KAKL + E V++++ ++ + + W ++ R YV HPYK+V+DV+T
Sbjct: 327 QALNRQAAMLRIKAKLTALAEEARVADIAELRGDIVKAEWGQQIRNYVLHPYKMVKDVRT 386
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
G++ D VL+G + ++ ++ + S +
Sbjct: 387 GVETSDVTRVLNGGLDEYMNGYLRWKASKN 416
>gi|425463014|ref|ZP_18842477.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9808]
gi|440756279|ref|ZP_20935480.1| peptide chain release factor 2 [Microcystis aeruginosa TAIHU98]
gi|389823793|emb|CCI27765.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9808]
gi|440173501|gb|ELP52959.1| peptide chain release factor 2 [Microcystis aeruginosa TAIHU98]
Length = 336
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 181/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELES-DRALLEEATDNL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTGVMNGDLDSFIEAYL 324
>gi|425444731|ref|ZP_18824775.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9443]
gi|389735466|emb|CCI01036.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9443]
Length = 334
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 181/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDAVRVEIPDKDLEITTARSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTGVMNGDLDSFIEAYL 324
>gi|434389323|ref|YP_007099934.1| peptide chain release factor 2 [Chamaesiphon minutus PCC 6605]
gi|428020313|gb|AFY96407.1| peptide chain release factor 2 [Chamaesiphon minutus PCC 6605]
Length = 371
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 159/272 (58%), Gaps = 6/272 (2%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L++ A + +S LD++E+ +LL G D +GA +TI AG+ G + WAE LL M
Sbjct: 92 DEALYQEAKQNLSQMSLELDRWELEQLLSGTYDAKGAILTINAGAGGTDAQDWAEMLLRM 151
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y RWA+ Y+ ++ + + G+KSAT+E E +YA+GYL E G H L+ N +
Sbjct: 152 YTRWAEDRKYKVQLAEISEGEEAGLKSATLEIEGKYAYGYLRSEKGTHRLVRISPFNAND 211
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGI 228
+ + A V+V+PL ++ S L I D DL ++ G+ Q++ K A I H PTG+
Sbjct: 212 KRQTSFAGVEVMPL-IDNSVQLDIPDTDLEITTTRAGGKGGQNVNKVETAVRIVHKPTGV 270
Query: 229 AVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHP 288
AV+ ER+ NK KAL LKAKLL+I EQ ++ I+ + + W ++ R YV HP
Sbjct: 271 AVRCTQERSQLQNKEKALVILKAKLLIIAQEQKTKEIAEIRGDMVEAAWGQQIRNYVFHP 330
Query: 289 YKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
Y++V+D++T ++ V++G I FIEA++
Sbjct: 331 YQMVKDLRTSVETTAVGDVMNGEIDEFIEAYL 362
>gi|425452562|ref|ZP_18832379.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 7941]
gi|389765600|emb|CCI08556.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 7941]
Length = 336
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 181/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +T+ AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDAKGAVLTVNAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTGVMNGDLDSFIEAYL 324
>gi|390439243|ref|ZP_10227653.1| Peptide chain release factor 2 [Microcystis sp. T1-4]
gi|389837370|emb|CCI31777.1| Peptide chain release factor 2 [Microcystis sp. T1-4]
Length = 336
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 182/319 (57%), Gaps = 6/319 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELES-DRTLLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFAN 241
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+ N
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQN 245
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 246 KEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVET 305
Query: 302 PDFNSVLDGNIKPFIEAHI 320
D + V++G++ FIEA++
Sbjct: 306 TDVSGVMNGDLDSFIEAYL 324
>gi|425469717|ref|ZP_18848630.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9701]
gi|389880407|emb|CCI38837.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9701]
Length = 336
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 181/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELES-DRTLLEEATDNL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTRVMNGDLDSFIEAYL 324
>gi|443667516|ref|ZP_21133963.1| peptide chain release factor 2 [Microcystis aeruginosa DIANCHI905]
gi|159027417|emb|CAO86901.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443331007|gb|ELS45688.1| peptide chain release factor 2 [Microcystis aeruginosa DIANCHI905]
Length = 330
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 180/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNI 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDPKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDVVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTGVMNGDLDSFIEAYL 324
>gi|413938323|gb|AFW72874.1| hypothetical protein ZEAMMB73_942412 [Zea mays]
Length = 227
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 135/217 (62%), Gaps = 5/217 (2%)
Query: 110 LLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP-- 167
LL MYVRW +K+ Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++
Sbjct: 2 LLRMYVRWGEKQRYKTRVVEKSPGEQAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPF 61
Query: 168 NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HI 224
N + + A V+V+PL E S + I +EDL S G+ Q++ K ++ HI
Sbjct: 62 NAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHI 121
Query: 225 PTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRY 284
PTGIAV+ ER+ ANK+KAL+RLKAKLLVI EQ S + I+ + + W ++ R Y
Sbjct: 122 PTGIAVRCSEERSQLANKIKALSRLKAKLLVIALEQRASEIKQIRGDIVKAEWGQQIRNY 181
Query: 285 VSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHIN 321
V HPYKLV+DV+TG + D V+DG + PFI A++
Sbjct: 182 VFHPYKLVKDVRTGCETSDITGVMDGELDPFIRAYLK 218
>gi|427704047|ref|YP_007047269.1| peptide chain release factor 2 [Cyanobium gracile PCC 6307]
gi|427347215|gb|AFY29928.1| peptide chain release factor 2 [Cyanobium gracile PCC 6307]
Length = 355
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 173/318 (54%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD ++ + + +L + + L+ + ++A+ +L ++E D L A
Sbjct: 26 GFWDDQQQAQKQMRQLDEVKAQLEQLQQWQAAIDDARATLELYDLEP-DEELLGEANGGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 QSLKGALDRWELERLLSGPYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE + YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIDGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE L I ++DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 205 P-KLEEEVKLDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++TG +
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTGEE 323
Query: 301 LPDFNSVLDGNIKPFIEA 318
D V+DG++ PFI++
Sbjct: 324 TTDVQGVMDGDLDPFIQS 341
>gi|255074407|ref|XP_002500878.1| predicted protein [Micromonas sp. RCC299]
gi|226516141|gb|ACO62136.1| predicted protein [Micromonas sp. RCC299]
Length = 428
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 178/345 (51%), Gaps = 26/345 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR-- 63
LWDDP K+ V+ +LAD+ + + + +A + ++ + E D L A
Sbjct: 74 TLWDDPIKAKAVMAELADAKEQLATARGFENLLGDAAVALEMIDAEREDDSLSGAAANDA 133
Query: 64 --------------ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQ 109
A ++ + LD++E+ +LL G D A V + AG+ G + WAE
Sbjct: 134 SAGPDPTILAELSDACDNLERQLDKWEVRRLLGGKYDAMPALVNVYAGAGGTDAQDWAEM 193
Query: 110 LLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG 169
L MY W + G+ R V++ + G+KS T E + +A+GYL E G H L+
Sbjct: 194 LERMYRGWCNSRGFTWRTVERSEGEEAGLKSVTFEVQGRFAYGYLRSERGTHRLVR--QS 251
Query: 170 SFPHEAT----LACVDVVPLFLETS-PDLQISDEDLLFS---SPSLPGERQSIAKPAACI 221
F +AT A V+V P+ E S +L + D DL S S G+ + + A I
Sbjct: 252 PFKKDATRQTSFAAVEVTPVLDEGSVEELTLRDSDLEISTMRSGGAGGQNVNKVETAVRI 311
Query: 222 QHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRET 281
+H+PTGI V+ ER+ ANK K L RLKAKL+ + EQ ++V+ I+ +A+ W ++
Sbjct: 312 KHVPTGITVRCEEERSQAANKAKGLARLKAKLVAVAEEQRAADVAAIRGDAVRAEWGQQI 371
Query: 282 RRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
R YV HPYK+V+DV+TG + D + V+ G++ F++ + +R +
Sbjct: 372 RNYVFHPYKMVKDVRTGKETSDVDGVMSGDLDEFMDEFLRWKRKT 416
>gi|78213950|ref|YP_382729.1| peptide chain release factor 2 [Synechococcus sp. CC9605]
gi|78198409|gb|ABB36174.1| peptide chain release factor 2 [Synechococcus sp. CC9605]
Length = 356
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 173/320 (54%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L R ++A+ +L E+E D L + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAQLSQLGGWRGAVDDAQATLELYELEP-DEDLLQEAQNGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 NQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E L I ++DL + S G+ + + A I HIPTG+ V+ ER+
Sbjct: 205 P-KIEEEVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ + ++ I+ + + W + R YV PY++V+D++T +
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFQPYQMVKDLRTNEE 323
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D +V+DG + PFI+A +
Sbjct: 324 TNDVQAVMDGALDPFIDASL 343
>gi|308176991|ref|YP_003916397.1| peptide chain release factor 2 [Arthrobacter arilaitensis Re117]
gi|307744454|emb|CBT75426.1| peptide chain release factor 2 [Arthrobacter arilaitensis Re117]
Length = 371
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 177/326 (54%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + V KL+ + L LR + ++ +++ +LAE+E D A +
Sbjct: 44 NLWDDPAAAQIVTSKLSHRQSELERLTRLRTRIDDLEVLVELAELED-DADTLDEAEKEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L E+ LL G D GA VTI++G+ G+ +AE LL MY+RWA++ GY+
Sbjct: 103 VSIQKSLADLEIVTLLSGEFDSRGAVVTIRSGAGGVDAADFAEMLLRMYLRWAERRGYKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+VV
Sbjct: 163 TVMDTSYAEEAGLKSATFEIDAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + ++ +F S G+ + A + HIPTG+ V E++
Sbjct: 223 PL-IEQTDTIEIPESEIRVDVFRSSGPGGQSVNTTDSAVRMTHIPTGVVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ EQ K+E ++ W + R YV +PY++V+D++T
Sbjct: 282 NRAAALRVLQSRLLLLKKEQE----DAQKKEFAGDVKATWGDQMRSYVLNPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +VLDG I FI+A I R
Sbjct: 338 EHEVGNTQAVLDGEIDDFIDAGIRWR 363
>gi|166363701|ref|YP_001655974.1| peptide chain release factor 2 [Microcystis aeruginosa NIES-843]
gi|425440004|ref|ZP_18820315.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9717]
gi|425467766|ref|ZP_18847045.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9809]
gi|166086074|dbj|BAG00782.1| peptide chain release factor 2 [Microcystis aeruginosa NIES-843]
gi|389719660|emb|CCH96545.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9717]
gi|389829362|emb|CCI29359.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9809]
Length = 330
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 180/320 (56%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+ + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 6 TFWDNLDTAQKTLQELNECKSSLETYQGWCGQLEDTKAIIELLELES-DRTLLEEATDNL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 65 THLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 125 TLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 184
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 185 PILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D+++ ++
Sbjct: 245 NKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V++G++ FIEA++
Sbjct: 305 TTDVTRVMNGDLDSFIEAYL 324
>gi|260436566|ref|ZP_05790536.1| peptide chain release factor 2 [Synechococcus sp. WH 8109]
gi|260414440|gb|EEX07736.1| peptide chain release factor 2 [Synechococcus sp. WH 8109]
Length = 356
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 172/318 (54%), Gaps = 7/318 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L R ++A+ +L E++ D L + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAQLSQLAGWRGAVDDAQATLELYELDP-DEDLLQEAQNGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 NQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E L I ++DL + S G+ + + A I HIPTG+ V+ ER+
Sbjct: 205 P-KIEEDVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ + ++ I+ + + W + R YV PY++V+D++T +
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFQPYQMVKDLRTNEE 323
Query: 301 LPDFNSVLDGNIKPFIEA 318
D +V+DG + PFI+A
Sbjct: 324 TNDVQAVMDGALDPFIDA 341
>gi|256832101|ref|YP_003160828.1| peptide chain release factor 2 [Jonesia denitrificans DSM 20603]
gi|256685632|gb|ACV08525.1| peptide chain release factor 2 [Jonesia denitrificans DSM 20603]
Length = 369
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 180/332 (54%), Gaps = 14/332 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ +V L+ + + ++ ++ + ++ +++ ++A +E D A
Sbjct: 43 DLWDDPAQAQQVTSALSLAQNELKRIESMQQRIDDLEVLVEMA-VEGNDADTLHEAEDEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LDQ E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 102 AAIKKDLDQLEVRTLLSGEYDAREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+VV
Sbjct: 162 AVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D ++ +F S G+ + A + HIPTGI V E++
Sbjct: 222 PL-IEQTDHVEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVVSMQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LL+ + + K+E +I W + R YV PY++V+D++T
Sbjct: 281 NRAAAMRVLQSRLLL----ERQAEEKAKKKELAGDIKASWGDQMRSYVLQPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ + N+V DG+I FIEA I RRS D D
Sbjct: 337 EHEVGNTNAVFDGHIDDFIEAGIRWRRSKDAD 368
>gi|259046384|ref|ZP_05736785.1| peptide chain release factor 2 [Granulicatella adiacens ATCC 49175]
gi|259036929|gb|EEW38184.1| peptide chain release factor 2 [Granulicatella adiacens ATCC 49175]
Length = 361
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 168/320 (52%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+N+V+ K + + + + EE L+ ++ + E D + A
Sbjct: 31 SFWDDSEKANQVIQKNNELKSIYDTFHKMELAHEETSLLFEMYKEEP-DEEVHAEIVEAI 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L +YE+S LL GP+D A + I G+ G + W LL MY+RWA+K GYR
Sbjct: 90 QSLEKDLQRYELSMLLNGPHDKNSAILEIHPGAGGTESQDWGSMLLRMYMRWAEKHGYRV 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ E A+GYL E G H L+ + + + VDVV
Sbjct: 150 ETVDYQDGDEAGIKSVTLSIEGLNAYGYLRSEKGVHRLVRISPFDAAGKRHTSFCSVDVV 209
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I+ +DL ++ + G+ + A I HIPTGI QS +R+ F
Sbjct: 210 PQ-MDGDIDIEINPDDLKVDVYRASGAGGQHINKTSSAVRITHIPTGIVTQSQAQRSQFK 268
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LKAKL + E+ + ++ I+ E W + R YV HPY +V+D+++G +
Sbjct: 269 NRDQAMAMLKAKLFQLEEEKKAAELAAIRGEQKDIAWGSQIRNYVFHPYSMVKDLRSGYE 328
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DG++ F++A++
Sbjct: 329 TGNIGAVMDGDLDSFMDAYL 348
>gi|414076417|ref|YP_006995735.1| peptide chain release factor 2 [Anabaena sp. 90]
gi|413969833|gb|AFW93922.1| peptide chain release factor 2 [Anabaena sp. 90]
Length = 315
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 164/287 (57%), Gaps = 7/287 (2%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
++ +++ +L E+E D L + A ++ LDQ+E+ +LL G D +GA +TI AG+
Sbjct: 22 DDTRVVVELLELET-DTALLEEAESTISKLNHDLDQWELQQLLSGTYDDKGAVLTINAGA 80
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WA L+ MY RWA+ Y+ + ++ + G+KS T+E YA+GYL E
Sbjct: 81 GGTDAQDWAFMLMRMYTRWAEDHSYKVTLAEESKGEEAGIKSVTLEITGRYAYGYLRSEM 140
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIA 215
G H L+ N + + + A ++V+P ++ + L I ++DL S+ G+ Q++
Sbjct: 141 GTHRLVRISPFNANGKRQTSFAGIEVMPQ-IDNTVKLDIPEKDLDISTTRSGGKGGQNVN 199
Query: 216 K--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAI 273
K A I H+PTG+AV+ ER+ NK KAL RLKAKLL+I EQ ++ I+ + +
Sbjct: 200 KVETAVRIVHLPTGLAVRCTEERSQLQNKEKALARLKAKLLIIAKEQRAQEIAEIRGDMV 259
Query: 274 VNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
W + R YV HPY++V+D++T I+ V++G + FI+A++
Sbjct: 260 EASWGNQIRNYVFHPYQMVKDLRTNIETTAITDVMNGELDMFIQAYL 306
>gi|258512512|ref|YP_003185946.1| hypothetical protein Aaci_2552 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479238|gb|ACV59557.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 383
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 165/320 (51%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ +++ ++ VV+ ++ L ++A++ QLA+ E D+ LF A R +
Sbjct: 46 DFWDDPDRAQKIIAEMNGVKSVVDTMRRLESLLQDAEVALQLAQ-EEDDHDLFAEANRLA 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D++E+ +L G D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 105 EQLKSEMDEFELQLMLSGEYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEDHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 165 EVLDYLPGEEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E ++I E+L + S G+ + A I HIPTGI V ER+
Sbjct: 225 PEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHIPTGIVVTCQSERSQIQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LK++L E+ ++ ++ E W + R YV HPY LV+D +T +
Sbjct: 285 NRARAMEILKSRLAAKRREEREQELAQLRGEQKEIAWGSQIRSYVFHPYSLVKDHRTNYE 344
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DG I PFI A++
Sbjct: 345 TSNTQAVMDGEIDPFIHAYL 364
>gi|218291021|ref|ZP_03495062.1| peptide chain release factor 2 [Alicyclobacillus acidocaldarius
LAA1]
gi|218239039|gb|EED06244.1| peptide chain release factor 2 [Alicyclobacillus acidocaldarius
LAA1]
Length = 342
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 165/320 (51%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ +++ ++ VV+ ++ L ++A++ QLA+ E D+ LF A R +
Sbjct: 5 DFWDDPDRAQKIISEMNGVKSVVDTMRRLESLLQDAEVALQLAQEED-DHDLFAEANRLA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D++E+ +L G D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 64 EQLKSEMDEFELQVMLSGEYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEDHGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 124 EVLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E ++I E+L + S G+ + A I HIPTGI V ER+
Sbjct: 184 PEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHIPTGIVVTCQSERSQIQ 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LK++L E+ ++ ++ E W + R YV HPY LV+D +T +
Sbjct: 244 NRARAMEILKSRLAAKRREEREQELAQLRGEQKEIAWGSQIRSYVFHPYSLVKDHRTNYE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DG I PFI A++
Sbjct: 304 TSNTQAVMDGEIDPFIHAYL 323
>gi|145347488|ref|XP_001418196.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578425|gb|ABO96489.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 278
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 152/266 (57%), Gaps = 6/266 (2%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
+ K LD +E+ +LL G D GA + I AG+ G+ + W E L MY+ W +K G+ R
Sbjct: 12 LDKALDAWELRRLLGGKYDAFGAVLQIYAGAGGLDAQDWTEMLERMYLGWCEKRGFAVRA 71
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
++ + GG+K+AT+E E YA+GYLS E G H L+ N + + A VDV+PL
Sbjct: 72 TERLEGEGGGLKTATLEVEGRYAYGYLSSEKGTHRLVRQSPFNKDAARQTSFAAVDVIPL 131
Query: 186 FLETSPDL-QISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
F E ++ ++ D DL S G+ + + A I+HIPTGI V++ R N
Sbjct: 132 FEEDMEEVVKVPDTDLEVTTMRSGGAGGQNVNKVETAVRIKHIPTGITVKAEEHRTQQLN 191
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ R+KAKL + E V++++ ++ + + W ++ R YV HPYKLV+DV+TG++
Sbjct: 192 RQAAMLRIKAKLTALAEEARVADIAELRGDIVKAEWGQQIRNYVLHPYKLVKDVRTGVET 251
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
D N VL+G + ++ ++ + +SD
Sbjct: 252 SDANKVLNGALDEYMNGYLRWKAASD 277
>gi|318040666|ref|ZP_07972622.1| peptide chain release factor 2 [Synechococcus sp. CB0101]
Length = 356
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 171/321 (53%), Gaps = 7/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ + +L + + L + +A+ ++ +E D L + A
Sbjct: 26 DFWDDQKQAQAKMRQLDEVKAQLEQLSQWQGAVADAEATVEIYGLEP-DEELLSESNEAL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 QKLRSDLDRWELERLLSGPYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E L I D+DL + S G+ + + A I HIPTG+ V+ ER+
Sbjct: 205 PK-IEEEVKLDIPDKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQHE 323
Query: 301 LPDFNSVLDGNIKPFIEAHIN 321
D V+DG++ PFI++ ++
Sbjct: 324 TTDVQGVMDGDLDPFIQSLLH 344
>gi|412993319|emb|CCO16852.1| peptide chain release factor 2 [Bathycoccus prasinos]
Length = 423
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 156/280 (55%), Gaps = 10/280 (3%)
Query: 54 DYGLFK-RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
DY L + A R+S+ ++++L ++E K+L G D G+ + I AG+ G + WAE L
Sbjct: 137 DYELLRTEAIRSSIKLNEMLSEFETEKMLGGKYDKLGSELFIYAGAGGTDAQDWAEMLER 196
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNG 169
Y+ WA K G++ + + + G+KS TIE E YAFG+L E G H L+ F G
Sbjct: 197 AYLNWAQKRGFKATITSRNKGEEAGIKSVTIEIEGTYAFGFLRSEKGTHRLVRLSPFKKG 256
Query: 170 SFPHEATLACVDVVPLFLETSPD---LQISDEDL---LFSSPSLPGERQSIAKPAACIQH 223
+ + A VDV PLF + S + + I ++DL S G+ + + A I+H
Sbjct: 257 DSSRQTSFAAVDVCPLFEDESEEAGEMNIPEKDLEITTMRSGGAGGQNVNKVETAVRIRH 316
Query: 224 IPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRR 283
IPT I V+ +R+ NK KA+ RLKAKL ++ +Q + +V I+ + + + + R
Sbjct: 317 IPTDITVRCDEDRSQMMNKAKAMVRLKAKLAAVLEQQRLQDVKEIRGDVVKAEFGEQIRN 376
Query: 284 YVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
YV HPYK+V+DV++G + D VL+GN PF++ ++ R
Sbjct: 377 YVLHPYKVVKDVRSGWETADTEGVLNGNFDPFMKEYLRFR 416
>gi|260584689|ref|ZP_05852435.1| peptide chain release factor 2 [Granulicatella elegans ATCC 700633]
gi|260157712|gb|EEW92782.1| peptide chain release factor 2 [Granulicatella elegans ATCC 700633]
Length = 331
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 174/332 (52%), Gaps = 13/332 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM---EAIDYGLFKRAY 62
WDD K+ V+ K + V + L + EE +L+ ++ + E I L +R +
Sbjct: 5 GFWDDNEKAQMVIQKSNELKAVYDTFHQLELQVEEVELLFEMYKEDPEEEIHDELVERVH 64
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
V K L++YE+S LL GP+D A + I G+ G + W LL MY RWA++ G
Sbjct: 65 S----VEKELEKYELSMLLSGPHDKCSAILEIHPGAGGTESQDWGSMLLRMYTRWAEQHG 120
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
YR VD + G+KS T+ E A+GYL E G H L+ + + + +
Sbjct: 121 YRIETVDYQDGEEAGIKSVTLSIEGLNAYGYLKSEKGVHRLVRISPFDAAGKRHTSFCSI 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
D++P LE D++I+ +DL ++ + G+ + A I HIPTGI QS +R+
Sbjct: 181 DIMPQ-LEGDIDIEINPDDLKIDVYRASGAGGQHINKTSSAVRITHIPTGIVTQSQAQRS 239
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
F NK +A+ LK KL + E+ + ++ I+ E W + R YV HPY LV+D+++
Sbjct: 240 QFKNKDQAMAMLKTKLYQLEEEKKAAELAEIRGEQKDIAWGSQIRNYVFHPYSLVKDLRS 299
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
G + + +V+DG++ PF++A++ S +T+
Sbjct: 300 GHETGNIGAVMDGDLDPFMDAYLKWTLSGETE 331
>gi|326493842|dbj|BAJ85383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 136/219 (62%), Gaps = 5/219 (2%)
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RW K+ Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N
Sbjct: 13 RWGGKQRYKSRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLR 72
Query: 174 EATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAV 230
+ + A V+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAV
Sbjct: 73 QTSFAGVEVMPLLPEESLDVEIPEEDLDISFTRAGGKGGQNVNKVETAVRMVHIPTGIAV 132
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
+ ER+ ANK+KAL RLKAKLLVI EQ S + I+ +A+ W ++ R YV HPYK
Sbjct: 133 RCAEERSQLANKIKALRRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 192
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
LV+DV+T + D + V+DG + PFI+A++ + S+ +
Sbjct: 193 LVKDVRTACETSDISGVMDGELDPFIKAYLQYKLSAAAE 231
>gi|313884513|ref|ZP_07818274.1| peptide chain release factor 2 [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620297|gb|EFR31725.1| peptide chain release factor 2 [Eremococcus coleocola
ACS-139-V-Col8]
Length = 341
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 173/321 (53%), Gaps = 9/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +V+ +L ++ ++DL + ++ + +L E E+ D + A
Sbjct: 16 DFWDDNDKAQKVISQLNEAKASYQTIQDLVSQVDDLGMALELYE-ESQDLDMLSEAEDIM 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
SK L+ YE+ LL GP+D A + I G+ G + W LL MY RWADK+G++
Sbjct: 75 TVTSKALNNYELQLLLSGPHDSANAILEIHPGAGGTESQDWGSMLLRMYQRWADKQGFQV 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D G+KS T+E + A+GYL E G H L+ F + + H + A ++V
Sbjct: 135 EVLDYQAGDEAGIKSVTLEIKGHNAYGYLKSEKGVHRLVRISPFDSNARRH-TSFASIEV 193
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P ++ S +++I+ +D+ + + G+ + A I HIPTGI QS +R+ F
Sbjct: 194 TPE-MDDSIEIEINPDDIRVDTYRASGAGGQHINKTSSAVRITHIPTGIVTQSQAQRSQF 252
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ LKAKL E+ ++ IK + + W + R YV HPY +V+D +TG
Sbjct: 253 QNRDQAMAMLKAKLYQREEEERAKEMAAIKGQQLEIGWGSQIRSYVFHPYSMVKDHRTGY 312
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
++ + +V+DG++ F++A++
Sbjct: 313 EVGNSQAVIDGDLDGFMDAYL 333
>gi|320161067|ref|YP_004174291.1| peptide chain release factor 2 [Anaerolinea thermophila UNI-1]
gi|319994920|dbj|BAJ63691.1| peptide chain release factor 2 [Anaerolinea thermophila UNI-1]
Length = 351
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 10/327 (3%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N +WDDPT + ++ ++AD + + + ++ +LAE E D L + +
Sbjct: 25 NPGIWDDPTSAQRLMKRIADLREEIEGWNQFLKRCQDG---LELAESE--DESLREDLEK 79
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ K L Q E++ LL GP D E A +TI AG+ G + WA L+ MY+RW ++ G+
Sbjct: 80 EISALEKELQQRELTTLLSGPYDHENALLTINAGAGGTDSQDWASMLMRMYLRWCERRGF 139
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D + G+KS TI YA+GYL GE G H L+ + + + A V+
Sbjct: 140 DSEILDFSEGEEAGIKSVTIAVTGPYAYGYLRGEKGVHRLVRLSPFDAAHRRHTSFAQVE 199
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P ++QI+ +DL ++ S S G+ A I HIPTGI V ER+
Sbjct: 200 VLPEISNGDNEIQINPDDLRIDIYRSSSAGGQNVQKNATAVRITHIPTGIVVSCQNERSQ 259
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ L+A+L + ++ ++ ++ E I W + R YV HPY+LV+D +T
Sbjct: 260 MQNRENAMRVLRARLAELKRQEQERQLAELRGEYIKAEWGSQIRSYVLHPYQLVKDHRTE 319
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +VLDG + FIEA++ S+++
Sbjct: 320 YETGNTQAVLDGELDGFIEAYLRSQKT 346
>gi|384136540|ref|YP_005519254.1| hypothetical protein TC41_2844 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290625|gb|AEJ44735.1| hypothetical protein TC41_2844 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 342
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 164/320 (51%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+P ++ +++ ++ VV+ +K L ++A++ QLA+ E D LF A R +
Sbjct: 5 DFWDNPDRAQKIIAEMNGVKSVVDTMKRLESLHQDAEVALQLAQ-EEDDPDLFAEANRLA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D++E+ +L G D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 64 EQLKSEMDEFELQLMLSGEYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEDHGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 124 EVLDYLPGEEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E ++I E+L + S G+ + A I HIPTGI V ER+
Sbjct: 184 PEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHIPTGIVVTCQSERSQIQ 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LK++L E+ ++ ++ E W + R YV HPY LV+D +T +
Sbjct: 244 NRARAMEILKSRLAAKRREEREQELAQLRGEQKEIAWGSQIRSYVFHPYSLVKDHRTNYE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DG I PFI A++
Sbjct: 304 TSNTQAVMDGEIDPFIHAYL 323
>gi|116074014|ref|ZP_01471276.1| peptide chain release factor 2 [Synechococcus sp. RS9916]
gi|116069319|gb|EAU75071.1| peptide chain release factor 2 [Synechococcus sp. RS9916]
Length = 356
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 169/322 (52%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L + ++A +L +E D + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAQLEQLNQWKRAVDDADATVELYALEP-DDDMLGEAQTGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL G D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 TQLRTELDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E L I ++DL + S G+ + + A I HIPTG+ V+ ER+
Sbjct: 205 PK-IEEDVQLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQHE 323
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
D V+DG++ PFI++ ++
Sbjct: 324 TNDVQGVMDGDLDPFIQSLLHQ 345
>gi|124024969|ref|YP_001014085.1| peptide chain release factor 2 [Prochlorococcus marinus str.
NATL1A]
gi|123960037|gb|ABM74820.1| peptide chain release factor RF-2 [Prochlorococcus marinus str.
NATL1A]
Length = 313
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 164/289 (56%), Gaps = 7/289 (2%)
Query: 35 RYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTI 94
R E+A L +L E++ +D + A+ + + LD++E +LL G D EGA ++I
Sbjct: 18 RGAIEDANLSLELYELD-LDEEILSEAHNGLEKLKQELDRWETERLLSGIYDKEGAVLSI 76
Query: 95 KAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYL 154
AG+ G + WA+ LL MY RWAD G + + + + G+KS TIE E YA+G+L
Sbjct: 77 NAGAGGTDAQDWAQMLLRMYTRWADNNGMKVIINELSEGEEAGIKSVTIEIEGVYAYGFL 136
Query: 155 SGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFS---SPSLPG 209
E G H L+ N + + + A V+V+P L+ +L+I ++DL + S G
Sbjct: 137 QNEKGTHRLVRISPFNANGKRQTSFAGVEVMP-KLDEEVELEIPEKDLEITTSRSGGAGG 195
Query: 210 ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIK 269
+ + + A I H+PTGIAV+ ER+ NK KA+ LK+KL+VI EQ + ++ I+
Sbjct: 196 QNVNKVETAVRILHVPTGIAVRCTQERSQLQNKDKAMALLKSKLMVIALEQRAAEIADIR 255
Query: 270 REAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEA 318
+ + W + R YV HPY++V+D++T + D +SV++G I FI++
Sbjct: 256 GDIVEAAWGNQIRNYVFHPYQMVKDLRTEQETTDVDSVMNGEIDIFIQS 304
>gi|134097701|ref|YP_001103362.1| peptide chain release factor 2 [Saccharopolyspora erythraea NRRL
2338]
gi|291006339|ref|ZP_06564312.1| putative peptide chain release factor 2 [Saccharopolyspora
erythraea NRRL 2338]
gi|166225115|sp|A4F8R2.1|RF2_SACEN RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|133910324|emb|CAM00437.1| putative peptide chain release factor 2 [Saccharopolyspora
erythraea NRRL 2338]
Length = 367
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 172/327 (52%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L + +KDLR + E+ +++ +L+E E D GL + A
Sbjct: 43 DLWDDVEHAQRVSSQLVHRQSELRKIKDLRQRVEDLEVLYELSEDEGDDSGLAE-ADSER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ E+ LL G D A VTI+A + G+ +AE L+ MYVRWA++ Y
Sbjct: 102 TKLKKDLEALEVRTLLSGDYDQREAVVTIRAEAGGVDAADFAEMLMRMYVRWAERHEYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET ++I ++D+ +F S G+ + A I HIPTGI V E++
Sbjct: 222 PVVEETDH-VEIPEKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVVSCQNEKSQLQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L++KLL EQ + + +K + W + R YV HPY++V+D++T +
Sbjct: 281 NKAAALRVLQSKLLAKKKEQERAELDALKDSG--SSWGNQMRSYVLHPYQMVKDLRTEFE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + ++VLDG I F+EA I RR D
Sbjct: 339 VGNPDAVLDGQIDGFLEAGIRWRRQQD 365
>gi|284929451|ref|YP_003421973.1| peptide chain release factor 2 [cyanobacterium UCYN-A]
gi|284809895|gb|ADB95592.1| bacterial peptide chain release factor 2 (bRF-2) [cyanobacterium
UCYN-A]
Length = 344
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 180/322 (55%), Gaps = 6/322 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+P + ++ +L++ ++ K E+ K+I L ++ D L + A
Sbjct: 19 NFWDNPETAQKISQELSNFKSQLDQYHQWYNKLEDTKIIMDLLILDN-DKSLLEEAQNNI 77
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD +++ +LL G D++GA + I G G + W+E LL MY RW + +GY+
Sbjct: 78 TQLKKNLDNWDLQQLLSGTYDIKGAILNINTGVGGTDAQDWSEMLLRMYRRWGESQGYKV 137
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ G+KSAT+EFE YAFGYL GE G H L+ N + + + ++V+
Sbjct: 138 NLVEISEGDEAGIKSATLEFEGCYAFGYLKGEKGTHRLVRISPFNANGKRQTSFTGIEVM 197
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
P ++I D+DL ++ G+ Q++ K A I H+PTGI+V+ ER+
Sbjct: 198 PKLEGNDIKVEIPDKDLEITTTRSGGKGGQNVNKVETAVRIVHLPTGISVRCTQERSQLQ 257
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+D++T ++
Sbjct: 258 NKEKALILLKAKLLIIAQEQRAKKIAEIRGDIVEAAWGNQIRSYVFHPYQMVKDLRTNVE 317
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
+ N V+DG++ FIEA++++
Sbjct: 318 TTNINDVMDGDLGLFIEAYLHN 339
>gi|219670742|ref|YP_002461177.1| hypothetical protein Dhaf_4746 [Desulfitobacterium hafniense DCB-2]
gi|219541002|gb|ACL22741.1| hypothetical protein Dhaf_4746 [Desulfitobacterium hafniense DCB-2]
Length = 368
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 165/325 (50%), Gaps = 6/325 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+P + +V+ +L+ + V L+ + ++ + Q+A +E D L
Sbjct: 43 DFWDNPEGAQKVMQELSYQQEKVKTYYTLQQQLDDMLTLYQMA-VEEKDESLEPELEEGI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + LD E+ LL GP D A VT+ AG+ G + W L MY+R+ ++ GY+
Sbjct: 102 LALQQRLDGLELEILLSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ F E AFGYL E G H L+ + S + A VDV+
Sbjct: 162 ETMDFLPGDEAGIKSATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E + ++QI EDL + + G+ + A I H+PTGI VQS ER+
Sbjct: 222 PEVMEDNAEIQIPPEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQSERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ L L+AKLL + +Q +S I+ E W + R YV HPY +V+D +T +
Sbjct: 282 NRAYCLRILQAKLLELKRKQQEDEISEIRGEQQEIAWGSQIRSYVFHPYNMVKDHRTNEE 341
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ +V+DG I FI A++ ++
Sbjct: 342 TANTGAVMDGEIDQFIAAYLQKTKA 366
>gi|296129092|ref|YP_003636342.1| peptide chain release factor 2 [Cellulomonas flavigena DSM 20109]
gi|296020907|gb|ADG74143.1| peptide chain release factor 2 [Cellulomonas flavigena DSM 20109]
Length = 371
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 176/328 (53%), Gaps = 14/328 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V L+ + + + LR + ++ + + ++A E D A
Sbjct: 44 NLWDDPEAAQKVTSALSSAQSELERVDKLRGRIDDLETLVEMA-AEEDDADTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L + E+ LL G DV A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 VGIRKDLGELEIRTLLAGEYDVRDAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+V+
Sbjct: 163 SVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 223 PL-IEQTDSVEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ E+ K+E +I W + R YV PY++V+D++T
Sbjct: 282 NRAAALRVLQSRLLLVRQEEE----RAAKKELAGDIKASWGDQMRSYVLQPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + SV DG+I FIEA + RR+
Sbjct: 338 EHEVGNPASVFDGDIDDFIEAGVRWRRA 365
>gi|423349181|ref|ZP_17326837.1| peptide chain release factor 2 [Scardovia wiggsiae F0424]
gi|393703410|gb|EJD65611.1| peptide chain release factor 2 [Scardovia wiggsiae F0424]
Length = 373
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 173/326 (53%), Gaps = 16/326 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + V +LA + + L+D+ + ++ +++ L E D A
Sbjct: 45 LWDDQDNAQRVTSQLAQAQNELKQLEDIGSRLDDIEVLYSLGSEEE-DADSRDEAREELK 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
VS+ L E+ LL G D A VTI++G+ G+ WA+ L+ MYVRWA++ GYR +
Sbjct: 104 AVSRELSDVEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYVRWAERHGYRLQ 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G LS E G H L+ F N S + + A V+V+
Sbjct: 164 VMDTSYAEEAGIKSATFEIDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PTGI V ER+
Sbjct: 223 PL-VEPTDHIDIPDSDIRVDTYMSHGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A++ L+++LLVI E+ + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMSVLQSRLLVIKQEEEAAK----KKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + + +V DG+I I+A I R
Sbjct: 338 GYETSNTQNVFDGDIDGLIDAGIRWR 363
>gi|375089821|ref|ZP_09736146.1| peptide chain release factor 2 [Facklamia languida CCUG 37842]
gi|374566668|gb|EHR37907.1| peptide chain release factor 2 [Facklamia languida CCUG 37842]
Length = 355
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 168/319 (52%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ V+ D + +N + K E+ +++ +L E E D L++
Sbjct: 29 FWDDQQKAQAVIKTSNDLKERLNTFFQIEQKLEDMQVVVELYE-ETEDQSLWEELQTLQT 87
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
S+ L+ Y++S LL +D A + I G+ G + W E LL MY RWA ++GY+ +
Sbjct: 88 TFSQELESYQLSLLLSQAHDSANAIIEIHPGAGGTESQDWGEMLLRMYDRWAHQKGYQVK 147
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVVP 184
V+D + G+KS T+E +G+L E G H LI P S T C +DV P
Sbjct: 148 VIDYQNGEEAGIKSVTLEVAGNKVYGHLKSEKGVHRLIRISPFDSNGKRHTSFCSIDVTP 207
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L ++ S +++I+ +DL + + G+ + A I H+PTGI QS +R+ N
Sbjct: 208 L-IDDSIEVEINPDDLRIDTYRASGAGGQHINKTSSAVRITHLPTGIVTQSQSQRSQIHN 266
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K +A+N LKAKL + E+ ++ IK + + N W + R YV HPY +V+D +TG +
Sbjct: 267 KDQAMNLLKAKLYQLEEERKQKELAAIKGDQLENAWGSQIRSYVFHPYSMVKDHRTGYET 326
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ +VLDG I FI+A++
Sbjct: 327 GNAEAVLDGEIDGFIDAYL 345
>gi|425735918|ref|ZP_18854229.1| peptide chain release factor 2 [Brevibacterium casei S18]
gi|425479152|gb|EKU46332.1| peptide chain release factor 2 [Brevibacterium casei S18]
Length = 372
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 178/333 (53%), Gaps = 20/333 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP + + KL+ + L+ + ++A+L+ +++E E L + A
Sbjct: 44 SFWDDPDSAQKTSAKLSHKQGTLEKLEKFGERIDDAELLIEMSEAEGDSDSLVE----AE 99
Query: 66 LDVSKLLDQY---EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D++KL DQ E+S LL G D A VT+++G+ G WA+ L+ MY+RWA+ G
Sbjct: 100 RDIAKLKDQLSELEISTLLSGEYDERSAVVTVRSGAGGDDATDWAQMLIRMYIRWAEGRG 159
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y + +D + G+KSATI+ YA+G LS E G H L+ + + + A V
Sbjct: 160 YNVQELDTSYAEGAGIKSATIQVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 219
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+VVPL +E++ +++ + DL ++ S G+ + A I HIPTG+ V E++
Sbjct: 220 EVVPL-IESTDHIEVDENDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGVVVSMQNEKS 278
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ A+ L+++LL E+ + K+E +I W + R YV+HPY++V+D
Sbjct: 279 QIQNREAAMRVLQSRLL----ERKRQEEAAQKKELAGDIKASWGDQMRSYVTHPYQMVKD 334
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++TG ++ + +V DG++ IEA I R+ +
Sbjct: 335 LRTGYEVNNPQAVFDGDLDGLIEAGIRWRKQQE 367
>gi|300868546|ref|ZP_07113164.1| peptide chain release factor 2 [Oscillatoria sp. PCC 6506]
gi|300333459|emb|CBN58356.1| peptide chain release factor 2 [Oscillatoria sp. PCC 6506]
Length = 291
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 167/280 (59%), Gaps = 7/280 (2%)
Query: 46 QLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEI 105
+L E+E D L + AY +S+ LDQ+E+ +LL GP D GA +TI AG+ G +
Sbjct: 2 ELLELET-DESLLQEAYTNLSQLSRELDQWELQQLLSGPYDAGGAVLTINAGAGGTDAQD 60
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WAE LL MY RW +++GY+ + + G+KSAT+E YA+GYL E G H L+
Sbjct: 61 WAEMLLRMYTRWGERQGYKVHLAEISEGDEAGLKSATLEIVGRYAYGYLRSEKGTHRLVR 120
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAAC 220
N + + + A V+V+P+ L+ S +L I ++DL ++ G+ Q++ K A
Sbjct: 121 ISPFNANDKRQTSFAGVEVMPI-LDRSVELDIPEKDLEVTTSRAGGKGGQNVNKVETAVR 179
Query: 221 IQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRE 280
I H+PTG+AV+ ER+ NK KAL LKAKLLV+ EQ ++ I+ + + W +
Sbjct: 180 IVHLPTGLAVRCTEERSQLQNKEKALVLLKAKLLVVAREQRAKEIAEIRGDMVEAAWGNQ 239
Query: 281 TRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
R YV HPY++V+D++TG++ V++G ++PFI+A++
Sbjct: 240 IRNYVFHPYQMVKDLRTGVETTAIADVMNGELEPFIQAYL 279
>gi|414887030|tpg|DAA63044.1| TPA: hypothetical protein ZEAMMB73_861498 [Zea mays]
Length = 364
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 145/241 (60%), Gaps = 6/241 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ +LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 117 DSSLWDDPSKAQGILVSLTEVKDKVKLLNDFKLQIEEAETIVKLTEELDSIDTGLLEEAS 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 177 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 237 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAV+ G +
Sbjct: 297 EVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCSGIIS 356
Query: 238 H 238
H
Sbjct: 357 H 357
>gi|414887032|tpg|DAA63046.1| TPA: hypothetical protein ZEAMMB73_861498, partial [Zea mays]
Length = 421
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 145/241 (60%), Gaps = 6/241 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ +LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 174 DSSLWDDPSKAQGILVSLTEVKDKVKLLNDFKLQIEEAETIVKLTEELDSIDTGLLEEAS 233
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 234 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 293
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 294 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 353
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERN 237
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAV+ G +
Sbjct: 354 EVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCSGIIS 413
Query: 238 H 238
H
Sbjct: 414 H 414
>gi|282882039|ref|ZP_06290680.1| peptide chain release factor 2 [Peptoniphilus lacrimalis 315-B]
gi|300814941|ref|ZP_07095169.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|281298069|gb|EFA90524.1| peptide chain release factor 2 [Peptoniphilus lacrimalis 315-B]
gi|300510911|gb|EFK38183.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 370
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 163/325 (50%), Gaps = 13/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD K+ +++ +L + VN ++ E+A I L EME DY + +
Sbjct: 46 NFWDDNEKAQKIIKELNSYQRKVNPYDEISDLIEDANDILLLMEMED-DYSSYDEFKKLI 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L++ K + +Y++ LL G D A ++I AG+ G + WA LL MYVR+A +G++
Sbjct: 105 LNIEKKVSEYKLETLLNGEFDENDAILSIHAGAGGTEAQDWASMLLRMYVRYATNKGFKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KS T++ E+A+G+L GE G H L+ + + + + VDV
Sbjct: 165 ETLDILKEDEAGIKSVTLKISGEHAYGFLKGEKGVHRLVRISPFDANKRRHTSFSSVDVF 224
Query: 184 PLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
P DL+I + S G+ + A I HIPTGI VQ ER+
Sbjct: 225 PDIDGDIDIEIKDEDLKID----TYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQNERS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ +A+ LKAKLL + E+ + ++ W + R YV PY LV+D +T
Sbjct: 281 QIQNRERAMQTLKAKLLALAEEERKEKIDDLQGNYSQIAWGSQIRSYVFQPYTLVKDHRT 340
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINS 322
++ D N V+DG++ PFI A++ S
Sbjct: 341 NCEVGDVNKVMDGDLDPFINAYLQS 365
>gi|319789223|ref|YP_004150856.1| hypothetical protein Theam_0242 [Thermovibrio ammonificans HB-1]
gi|317113725|gb|ADU96215.1| hypothetical protein Theam_0242 [Thermovibrio ammonificans HB-1]
Length = 373
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 174/322 (54%), Gaps = 5/322 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP K+ + V+ + + A K + K E+++++ ++AE E D L A +
Sbjct: 46 DFWNDPKKAQSLSVERNHLEQELEAFKSVEQKIEDSEVLIEMAEEEQ-DGSLLDEAEQML 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K LD+ E+ K+L G D A VTI AG+ G WA+ L+ MY+RWA+++G+
Sbjct: 105 SDLDKTLDRLEVKKVLSGEFDKNNAIVTIHAGAGGTESCDWAQMLMRMYIRWAERKGFEV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLACVDVVP 184
++D + G+KSAT+ + YA+G+L E G H L+ P + T C +V
Sbjct: 165 EILDLQENEEAGIKSATLLIKGPYAYGFLRAEHGTHRLVRISPFDANARRHTSFCGVIVV 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ +++I +EDL + + G+ + A I HIPTGI V ER+ N
Sbjct: 225 PEIDEDIEVEIKEEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVTCQSERSQIQN 284
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ +A+ LKA+L + ++ ++ + E W + R Y+ PY+LV+D +TG++
Sbjct: 285 RQRAMKILKARLYELERQKREEKIAQARGEHKSIAWGNQIRSYIFQPYRLVKDHRTGVET 344
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ ++V+DG+I FIEA++ +
Sbjct: 345 SNIDAVMDGDIDLFIEAYLKQK 366
>gi|194476812|ref|YP_002048991.1| peptide chain release factor 2 [Paulinella chromatophora]
gi|171191819|gb|ACB42781.1| peptide chain release factor 2 [Paulinella chromatophora]
Length = 354
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 7/317 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD ++ + + +L + + + L+ + +AK +L +E D +
Sbjct: 27 FWDLQDQAQKQMRQLDEVREQLEKLRQWQGTIADAKATLELYNIEP-DESMLNEGNEGMQ 85
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL G D GA ++I AG+ G + WA LL MY RW++ G +
Sbjct: 86 RLKNNLDRWELERLLNGTYDKGGAVISINAGAGGTDAQDWARMLLRMYTRWSEDHGMKVN 145
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + + G+KS T E + YA+GYL E G H L+ N + + + A V+V+P
Sbjct: 146 ICEISEGEEAGIKSVTFEIDGSYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVMP 205
Query: 185 LFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L D+ I D+DL + S G+ + + A I HIPTG+AV+ ER+ N
Sbjct: 206 K-LNEDIDMFIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQN 264
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKL+VI EQ + ++ I+ E + W + R YV HPY++V+D++T +
Sbjct: 265 KEKAMALLKAKLMVIAQEQRAAEIADIRGEIVEAAWGNQIRNYVFHPYQMVKDLRTNKET 324
Query: 302 PDFNSVLDGNIKPFIEA 318
D V+DG++ FI+A
Sbjct: 325 TDVQGVMDGDLDLFIQA 341
>gi|225847994|ref|YP_002728157.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644274|gb|ACN99324.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 370
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 176/336 (52%), Gaps = 21/336 (6%)
Query: 6 NLWDDPTKSNEVLVK-------LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
N W+DP K+ E+ K L + LK+ +KDL+ QL EME D L+
Sbjct: 44 NFWNDPKKAQEISSKRNYLGEKLEEILKIDKKVKDLQD-------YIQLLEMEK-DESLY 95
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ + K L++ E+S LL D + A +T++AGS G+ W + L+ MY+RWA
Sbjct: 96 TEVEKEINHLEKELERLEISSLLSDEMDSKNAILTLQAGSGGVEACDWTQMLMRMYLRWA 155
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+ +G++ +VD G+KSATI + +A+GYL GE G H L+ + + +
Sbjct: 156 EGKGFQVEIVDYQPDDVAGIKSATIIIKGPFAYGYLKGEQGVHRLVRISPFDANKRRHTS 215
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V V+P ++ ++I++EDL F + G+ + A I HIPTGI V
Sbjct: 216 FAAVSVIP-EIDEEIKVEINEEDLRIDTFRASGAGGQHVNKTDSAVRITHIPTGIVVACQ 274
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ NK+KALN LKAKL + ++ ++ E W + R YV PY++V+
Sbjct: 275 SERSQLQNKLKALNMLKAKLYQLELQKQKEKQKELEGEKKDITWGNQIRSYVFQPYQMVK 334
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
D++TG ++ + +V+DG+I FIE+++ + D
Sbjct: 335 DLRTGYEVGNVEAVMDGDIDGFIESYLKWKAKEKND 370
>gi|317968157|ref|ZP_07969547.1| peptide chain release factor 2 [Synechococcus sp. CB0205]
Length = 356
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 170/322 (52%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + +L + + L + +A+ ++ +E D L + A
Sbjct: 26 DFWDDQKLAQSKMRQLDEVKAQLEQLSQWKGAVADAEATVEIYGLEPDDE-LLSESDAAL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL G D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 KKLRADLDRWELERLLSGTYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSDGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E L I ++DL + S G+ + + A I HIPTG+ V+ ER+
Sbjct: 205 PK-IEEEVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCTQERSQLQ 263
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L AKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 264 NKEKAMALLMAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTQHE 323
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
D V+DG++ PFI++ +++
Sbjct: 324 TTDVQGVMDGDLDPFIQSLLHA 345
>gi|170782441|ref|YP_001710774.1| chain release factor 2 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157010|emb|CAQ02182.1| chain release factor 2 [Clavibacter michiganensis subsp.
sepedonicus]
Length = 367
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 177/330 (53%), Gaps = 16/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V L+ + + +L+ + ++ + L EM D + A
Sbjct: 44 DLWDDTEKAQKVTSDLSHRQSELKRIDELQRRLDDLDV---LVEMAKDDEESAEEAVVEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K++D+ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ Y
Sbjct: 101 AGITKIMDELEVQTLLNGEFDPRPAVVTIRAGAGGVDAADFAEMLMRMYLRWAEQHDYSA 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ N + + + A V+VV
Sbjct: 161 TVLDTSYAEEAGIKSATFEIDAPYAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + D+ +F S G+ + A I H+PTGI V E++
Sbjct: 221 PL-IEQTESIEIPENDMRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVTCQNEKSQIQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ EQ + K+E NI W + R YV PY++V+D++T
Sbjct: 280 NRAAALRVLQSRLLLVQREQE----AATKKELAGNITASWGDQMRSYVLAPYQMVKDLRT 335
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + ++V DG++ FI A I R+S D
Sbjct: 336 EHEVNNPSNVFDGDLDGFISAGIRWRKSPD 365
>gi|72383384|ref|YP_292739.1| peptide chain release factor 2 [Prochlorococcus marinus str.
NATL2A]
gi|72003234|gb|AAZ59036.1| bacterial peptide chain release factor 2 (bRF-2) [Prochlorococcus
marinus str. NATL2A]
Length = 313
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 7/289 (2%)
Query: 35 RYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTI 94
R E+A L +L E++ D + A+ + + L+++E +LL G D EGA ++I
Sbjct: 18 RGAIEDANLSVELYELDP-DEEILSEAHNGLEQLKQELERWETERLLSGIYDKEGAVLSI 76
Query: 95 KAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYL 154
AG+ G + WA+ LL MY RWA+ G + + + + G+KS TIE E YA+G+L
Sbjct: 77 NAGAGGTDAQDWAQMLLRMYTRWAENNGMKVSINELSEGEEAGIKSVTIEIEGVYAYGFL 136
Query: 155 SGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFS---SPSLPG 209
E G H L+ N + + + A V+V+P L+ +L+I ++DL + S G
Sbjct: 137 QNEKGTHRLVRISPFNANGKRQTSFAGVEVMP-KLDEEVELEIPEKDLEITTSRSGGAGG 195
Query: 210 ERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIK 269
+ + + A I H+PTGIAV+ ER+ NK KA+ LK+KL+VI EQ + ++ I+
Sbjct: 196 QNVNKVETAVRILHVPTGIAVRCTQERSQLQNKDKAMALLKSKLMVIAVEQRAAEIADIR 255
Query: 270 REAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEA 318
+ + W + R YV HPY++V+D++T + D +SV++G I FI++
Sbjct: 256 GDIVEAAWGNQIRNYVFHPYQMVKDLRTEQETTDVDSVMNGKIDIFIQS 304
>gi|296268776|ref|YP_003651408.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833]
gi|296091563|gb|ADG87515.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833]
Length = 378
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 172/320 (53%), Gaps = 8/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP K+ V +L+ VN +++L + E+ ++ +LA E D A R
Sbjct: 44 DLWNDPEKAQRVTSRLSHLQGEVNRIEELARRLEDLPVLFELAAEEG-DQEALAEAEREL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + E+ LL G D A +TI A + G+ WA+ LL MY+RWA+++GY
Sbjct: 103 AKLKSDIGALEVRTLLSGEYDEREALITINAQAGGVDAADWAQMLLRMYLRWAERKGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KS T + YA+G L GE G H L+ + + + A VDV+
Sbjct: 163 EIYDTSYAEEAGIKSVTFTVKAPYAYGTLKGEHGTHRLVRISPFDNQARRQTSFAGVDVM 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + D++I+++++ ++ S G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VEQTDDIEINEDEIRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKAKLL ++ ++ ++ E + W + R YV HPY++V+D++TG++
Sbjct: 282 NRATAMAVLKAKLLERKRQEEAQAMAELRGETTTS-WGTQIRNYVLHPYQIVKDLRTGVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +VLDG++ FIEA I
Sbjct: 341 SGNPTAVLDGDLDQFIEAEI 360
>gi|255283235|ref|ZP_05347790.1| peptide chain release factor 2 [Bryantella formatexigens DSM 14469]
gi|255266308|gb|EET59513.1| peptide chain release factor 2 [Marvinbryantia formatexigens DSM
14469]
Length = 334
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 165/334 (49%), Gaps = 35/334 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKD-------LRYKAEEAKLIAQLAEMEAIDYGLF 58
+ WDDP S E S+K + ALKD L+ + EE + + ++A E D L
Sbjct: 5 DFWDDPESSQE-------SMKTLKALKDDVETYAVLKEQYEEIETLIEMA-YEENDASLI 56
Query: 59 KRAYRASLDVSKLLDQY-------EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLL 111
L++ + LD + + LL G D A VT+ AG+ G WA L
Sbjct: 57 -------LEIQETLDSFIATFENIRIRTLLSGEYDKNDAIVTLHAGAGGTESCDWAGMLY 109
Query: 112 NMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NG 169
MY RWADK+GY V+D + G+KS T E E A+GYL E G H L+ N
Sbjct: 110 RMYTRWADKKGYTVEVLDYLDGEEAGIKSVTFEVRGENAYGYLKSEKGVHRLVRISPFNA 169
Query: 170 SFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPT 226
+ + + DV+P +E D++I +EDL + S G+ + A I H+PT
Sbjct: 170 AGKRQTSFVSCDVMP-DIEEDLDIEIREEDLRIDTYRSSGAGGQHINKTSSAVRITHLPT 228
Query: 227 GIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVS 286
I VQ ER+ F NK KA+ LKAKL ++ ++ VS I+ E W + R YV
Sbjct: 229 NIVVQCQNERSQFQNKDKAMQMLKAKLYLLKQQENAEKVSGIRGEVKEIGWGNQIRSYVM 288
Query: 287 HPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
PY +V+D +T + + +SV+DGNI FI A++
Sbjct: 289 QPYTMVKDHRTNAETGNVDSVMDGNIDLFINAYL 322
>gi|334336533|ref|YP_004541685.1| peptide chain release factor 2 [Isoptericola variabilis 225]
gi|334106901|gb|AEG43791.1| Peptide chain release factor 2 [Isoptericola variabilis 225]
Length = 371
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 173/332 (52%), Gaps = 14/332 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP K+ V L+ + + +K LR + ++ + + ++ + E D A
Sbjct: 44 DLWDDPEKAQSVTSALSATQGELERVKKLRQRIDDVETLVEMGQ-EMDDADTLVEAETEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AAIRKDLDVLEVRTLLNGEYDAREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+VV
Sbjct: 163 SVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 223 PL-IEQTDHIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL+ Q + K+E +I W + R YV PY++V+D++T
Sbjct: 282 NRAAALRVLQSRLLL----QRQQEEAAKKKELAGDIKASWGDQMRSYVLQPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + +V DG I FIEA I RRS D
Sbjct: 338 EHESGNPAAVFDGAIDDFIEAGIRWRRSQGAD 369
>gi|403527852|ref|YP_006662739.1| peptide chain release factor 2 [Arthrobacter sp. Rue61a]
gi|403230279|gb|AFR29701.1| peptide chain release factor 2 [Arthrobacter sp. Rue61a]
Length = 374
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 176/323 (54%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + +L+ V L L + ++ +++ +L + E + + + A S
Sbjct: 46 DLWDDPASAQVITSRLSHRQSEVERLSKLASRIDDLEVLVELGQDEGDEDSMAEAAKELS 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E++ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 106 -SIRKALAELEITTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 165 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D ++ +F S G+ + A + HIPTGI V E++
Sbjct: 225 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVVSMQNEKSQLQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + + W + R YV +PY++V+D++T +
Sbjct: 284 NRAAAMRVLQSRLLLVKKEQQDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++VLDG+I FI+A I R
Sbjct: 343 VGNTSAVLDGDIDDFIDAGIRWR 365
>gi|289549137|ref|YP_003474125.1| peptide chain release factor 2 [Thermocrinis albus DSM 14484]
gi|289182754|gb|ADC89998.1| peptide chain release factor 2 [Thermocrinis albus DSM 14484]
Length = 372
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 28/330 (8%)
Query: 6 NLWDDPTKSNEVLVK----------LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
++W+ K+ ++L + L + KV++ +++L + EE L Q E ++
Sbjct: 43 HIWNQQEKAKKILQRRKWLEENIQQLEATEKVLSDIRELLHITEEEDLETQTLLKEELE- 101
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+++ E+ L G D + A +TI+AG+ G+ WA+ LL MY
Sbjct: 102 -----------KAEQMIKDMEIRAFLSGEMDAKNAYLTIQAGAGGVEACDWAQMLLRMYR 150
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA+K GY VVD G+KSAT+ + YA+GYL GE+G H L+ + +
Sbjct: 151 RWAEKHGYEVEVVDITPDDVAGIKSATLLIKGPYAYGYLKGESGVHRLVRISPFDANARR 210
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V VVP ++ S +++I +ED+ F + G+ + A I+H PTGI V
Sbjct: 211 HTSFASVTVVPQ-IDESINIEIREEDIEMETFRASGAGGQYVNKTDTAVRIRHKPTGIVV 269
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ + N+MKAL LKAKL + ++ ++ E W + R YV PY+
Sbjct: 270 TCQQERSQYQNRMKALELLKAKLYQLKLQELEEKKRALEGEKTEIGWGHQIRSYVFQPYQ 329
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
LV+D++TG+++ D SV+DG I PFIEA++
Sbjct: 330 LVKDLRTGVEIGDVESVMDGEIDPFIEAYL 359
>gi|229821252|ref|YP_002882778.1| peptide chain release factor 2 [Beutenbergia cavernae DSM 12333]
gi|259585260|sp|C5BYB6.1|RF2_BEUC1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|229567165|gb|ACQ81016.1| peptide chain release factor 2 [Beutenbergia cavernae DSM 12333]
Length = 374
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 176/331 (53%), Gaps = 14/331 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + ++ + + QLA E D A
Sbjct: 43 DLWDDPDAAQKVTSRLSHTQSELERLDTLRSRIDDLETLVQLA-AEEDDADTLAEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+++GY
Sbjct: 102 TKIRTSMGELEVRTLLAGEYDSREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERKGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 162 QVLDTSYAEEAGLKSATFEVKVPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I + D+ +F S G+ + A I H+PTGI V E++
Sbjct: 222 PL-IEQTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSMQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LL+ + E+ + K+E ++ W + R YV PY++V+D++T
Sbjct: 281 NRAAAMRVLQSRLLLAMQEEE----NAKKKELAGDVKASWGDQMRSYVLQPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++ + ++V DG+I FIEA I RR T
Sbjct: 337 EHEVGNPSAVFDGDIDDFIEAGIRWRRQQQT 367
>gi|119960719|ref|YP_948373.1| peptide chain release factor 2 [Arthrobacter aurescens TC1]
gi|119947578|gb|ABM06489.1| peptide chain release factor 2 [Arthrobacter aurescens TC1]
Length = 398
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 176/323 (54%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + +L+ V L L + ++ +++ +L + E + + + A S
Sbjct: 70 DLWDDPASAQVITSRLSHRQSEVERLSKLASRIDDLEVLVELGQDEGDEDSMAEAAKELS 129
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E++ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 130 -SIRKALAELEITTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 188
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 189 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 248
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D ++ +F S G+ + A + HIPTGI V E++
Sbjct: 249 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVVSMQNEKSQLQ 307
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + + W + R YV +PY++V+D++T +
Sbjct: 308 NRAAAMRVLQSRLLLVKKEQQDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 366
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++VLDG+I FI+A I R
Sbjct: 367 VGNTSAVLDGDIDDFIDAGIRWR 389
>gi|295395219|ref|ZP_06805427.1| peptide chain release factor RF2 [Brevibacterium mcbrellneri ATCC
49030]
gi|294971981|gb|EFG47848.1| peptide chain release factor RF2 [Brevibacterium mcbrellneri ATCC
49030]
Length = 376
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 171/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + KL+ + L+ + E+ +L+ + E E + L + A+
Sbjct: 43 DLWDDPDVAQAITSKLSHKQGTLEKLQKFDQRIEDVELLVSMGEDEGDEDALNE----AA 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+V KL L E+S LL G D A +T++AG+ G WA+ L MY+RWA+ G
Sbjct: 99 AEVEKLKSELAALEISTLLSGEFDERSAVITVRAGAGGDDATDWAQMLTRMYIRWAENRG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +D + GVKSAT++ YA+G LS E G H L+ + + + A V
Sbjct: 159 YKVEELDTSYAEGAGVKSATVQVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+VVPL +E + + I + DL +F S G+ + A I H+PTG+ V E++
Sbjct: 219 EVVPL-IEQTDHIDIDENDLRIDVFRSSGPGGQSVNTTDSAVRITHVPTGVVVSMQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LL + E+ + + + I W + R YV+HPY++V+D++T
Sbjct: 278 QIQNRAAAMRVLQSRLLQLKREEEEAQKKDLAGD-IKASWGDQMRSYVTHPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G ++ + +V DG+I F+EA I R
Sbjct: 337 GYEVNNPQAVFDGDIDDFLEAGIRWR 362
>gi|119025481|ref|YP_909326.1| peptide chain release factor 2 [Bifidobacterium adolescentis ATCC
15703]
gi|154486912|ref|ZP_02028319.1| hypothetical protein BIFADO_00745 [Bifidobacterium adolescentis
L2-32]
gi|118765065|dbj|BAF39244.1| peptide chain release factor 2 [Bifidobacterium adolescentis ATCC
15703]
gi|154084775|gb|EDN83820.1| peptide chain release factor 2 [Bifidobacterium adolescentis L2-32]
Length = 376
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 164/324 (50%), Gaps = 10/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V KL+ + L + E+ + + +L + E D A
Sbjct: 44 GLWDDPENAQKVTSKLSAVQSQLKRLASADQRIEDVETLVELGQEEE-DADTLAEAKAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 ESIQKDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
PL T PD +I + S P G+ + A I HIPTGI V ER+
Sbjct: 223 PLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVVTMQDERSQI 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG
Sbjct: 281 QNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGY 339
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ +V DG+I FIEA I R
Sbjct: 340 ETSQTQAVFDGDIDEFIEAGIRWR 363
>gi|332707784|ref|ZP_08427811.1| bacterial peptide chain release factor 2 [Moorea producens 3L]
gi|332353487|gb|EGJ33000.1| bacterial peptide chain release factor 2 [Moorea producens 3L]
Length = 294
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 167/287 (58%), Gaps = 7/287 (2%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
E+ K I +L E+E D L A ++K LD++E+ +LL G D +GA +TI AG+
Sbjct: 2 EDTKAILELLELET-DDALLAEAQTNLTQLNKELDRWELEQLLSGTYDAKGAVLTINAGA 60
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WA+ LL MY RWA+ GY+ + + G+KSAT+E + A+GYL E
Sbjct: 61 GGTDAQDWADLLLRMYTRWAENHGYKVHLAELSPGDEAGIKSATLEIDGLRAYGYLKAEK 120
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIA 215
G H L+ N + + + A V+V+P ++ + +L+I ++DL ++ G+ Q++
Sbjct: 121 GTHRLVRISPFNANGKRQTSFAGVEVMP-AVDNTVELEIPEKDLEITTSRAGGKGGQNVN 179
Query: 216 K--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAI 273
K A I HIPTG+AV+ ER+ NK KAL LKAKLLVI EQ ++ I+ + +
Sbjct: 180 KVETAVRIVHIPTGLAVRCTQERSQLQNKEKALVLLKAKLLVIAEEQRAQEIAEIRGDMV 239
Query: 274 VNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
W + R YV HPY++V+D++T ++ N VLDGN+ FIEA++
Sbjct: 240 EAAWGNQIRNYVFHPYQMVKDLRTSVETTAVNDVLDGNLDLFIEAYL 286
>gi|452993792|emb|CCQ94608.1| Peptide chain release factor 2 [Clostridium ultunense Esp]
Length = 346
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 174/323 (53%), Gaps = 7/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D K+ +++ K+++ V +DL E+ +++ +L+ +E DY ++K
Sbjct: 24 DFWQDSDKAQKIMQKISNLKGAVKEYEDLLNSIEDLEVLIELS-LEEEDYHVYKEIKENF 82
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
VS +++++S LL G D A ++I +G+ G+ + WAE L MY RWA+++G+R
Sbjct: 83 EKVSYEAEKFKLSTLLNGEYDKNNAILSIHSGAGGLEAQDWAEMLFRMYKRWAEQKGFRV 142
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D GG+KS T+ + AFGYL E G H L+ + S + A +D+
Sbjct: 143 EILDLLSDTEGGIKSVTMLIKGFNAFGYLKSEKGVHRLVRISPFDSSNRRHTSFASIDIY 202
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ D++I++ D+ + + G+ + A + HIPTGI VQ ER+ +
Sbjct: 203 PE-LDDDMDIEINESDIKIDTYRASGAGGQHVNTTDSAVRVTHIPTGIIVQCQNERSQHS 261
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N++ A+ LKAKL+ + E+ + ++ + W + R Y+ HPY LV+D +T ++
Sbjct: 262 NRLTAMKMLKAKLIQLKEEEQKEKIEDLQGKYTQIAWGSQIRSYIFHPYSLVKDHRTEVE 321
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D + V+DG+I FI ++ +
Sbjct: 322 IGDIDKVMDGDIDLFINEYLKQK 344
>gi|227486869|ref|ZP_03917185.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541969|ref|ZP_03972018.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092943|gb|EEI28255.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182412|gb|EEI63384.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 366
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 172/323 (53%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDPT + +V L+ + + ++ LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDDPTNAQKVTSDLSHTQSTLKKVRALRQRVDDLPVMYELAEEEGEGTEL---ADDER 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + ++ E+ +L G D A VTI++G+ G+ WAE L+ MY+RWA+KEG++
Sbjct: 100 ADLRQAIESMEVQTMLSGEYDERDAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKEGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V D + G+KSAT + Y +G LS E G H L+ + + + A V+V+
Sbjct: 160 QVFDTSYAEEAGIKSATFQVSDPYMYGTLSVEQGTHRLVRISPFDNQARRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D D+ ++ S G+ + A I HIPTGI V E++
Sbjct: 220 PV-VEKTDHIDIPDSDVRVDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NRASAMAVLQSRLLERKRQEEQAEMDALGAGGEAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D + VLDG+I F+EA I R
Sbjct: 338 VGDPSKVLDGDIDGFLEAGIRWR 360
>gi|148272488|ref|YP_001222049.1| peptide chain release factor RF-2 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830418|emb|CAN01353.1| peptide chain release factor RF-2 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 367
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 177/330 (53%), Gaps = 16/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V L+ + + +L+ + ++ + L EM D + A
Sbjct: 44 DLWDDTEKAQKVTSDLSHRQSELKRIDELQRRLDDLDV---LVEMAKDDEESAEEAVVEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K++D+ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ Y
Sbjct: 101 AGITKIMDELEVQTLLNGEFDPRPAVVTIRAGAGGVDAADFAEMLMRMYLRWAEQHDYSA 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ N + + + A V+VV
Sbjct: 161 TVLDTSYAEEAGIKSATFEIDAPYAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + ++ +F S G+ + A I H+PTGI V E++
Sbjct: 221 PL-IEQTESIEIPENEMRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVTCQNEKSQIQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ EQ + K+E NI W + R YV PY++V+D++T
Sbjct: 280 NRAAALRVLQSRLLLVQREQE----AATKKELAGNITASWGDQMRSYVLAPYQMVKDLRT 335
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + ++V DG++ FI A I R+S D
Sbjct: 336 EHEVNNPSNVFDGDLDGFISAGIRWRKSPD 365
>gi|145593537|ref|YP_001157834.1| peptide chain release factor 2 [Salinispora tropica CNB-440]
gi|189040004|sp|A4X3K6.1|RF2_SALTO RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|145302874|gb|ABP53456.1| bacterial peptide chain release factor 2 (bRF-2) [Salinispora
tropica CNB-440]
Length = 373
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 173/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ +N L +LR + ++AK++ +LAE E+ D G
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEINKLAELRSRLDDAKVLLELAEAES-DPGALTEVEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AGLAKAIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ F S G+ + A I HIPTGI V E++
Sbjct: 223 PV-VEQTDHIDIPENEMRFDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ + + +K +A W + R YV HPY++V+D++T +
Sbjct: 282 NKASALRVLQARLLERKRQEEQAKLQGLKTDA-AGSWGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+V DG + FIEA I R+
Sbjct: 341 TGTPAAVFDGELDAFIEAGIRWRK 364
>gi|297243831|ref|ZP_06927761.1| protein chain release factor B [Gardnerella vaginalis AMD]
gi|415708622|ref|ZP_11462636.1| peptide chain release factor 2 [Gardnerella vaginalis 6420LIT]
gi|415710294|ref|ZP_11463683.1| peptide chain release factor 2 [Gardnerella vaginalis 6420B]
gi|296888252|gb|EFH26994.1| protein chain release factor B [Gardnerella vaginalis AMD]
gi|388054521|gb|EIK77459.1| peptide chain release factor 2 [Gardnerella vaginalis 6420LIT]
gi|388055534|gb|EIK78435.1| peptide chain release factor 2 [Gardnerella vaginalis 6420B]
Length = 378
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 170/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L E E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGEEEG-DADSMNEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GNIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|350565918|ref|ZP_08934640.1| peptide chain release factor RF2 [Peptoniphilus indolicus ATCC
29427]
gi|348663296|gb|EGY79887.1| peptide chain release factor RF2 [Peptoniphilus indolicus ATCC
29427]
Length = 348
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 164/321 (51%), Gaps = 9/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ + +V+ +L V+ L K EEA + +L E+E D+ + +
Sbjct: 24 NFWDNSESAQKVIKELNHHQGKVDKYDKLSKKIEEANDLIELMELEE-DFTFYDEFKKDL 82
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K D++++ LL G D +TI AG+ G + WA LL MY R+A+ +G++
Sbjct: 83 EDIEKFADEFKLETLLNGEYDANDCILTIHAGAGGTEAQDWASMLLRMYTRYAESKGFKV 142
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++D G+KSAT+ + +GY+ GE G H L+ F + H + + VDV
Sbjct: 143 EILDIQKEDEAGIKSATLLISGDNGYGYMKGEKGVHRLVRISPFDSNKRRH-TSFSSVDV 201
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P ++ + +++I EDL + S G+ + A I HIPTGI VQ ER+
Sbjct: 202 YPQ-IDGAVEVEIRAEDLKVDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQNERSQI 260
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+N LKAKL+ + E+ + ++ W + R YV PY LV+D +T
Sbjct: 261 QNRETAMNMLKAKLIALAEEEQKEKIDDLQGNYSQIAWGSQIRSYVFQPYTLVKDHRTNT 320
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
++ D N V+DG++ FI +++
Sbjct: 321 EVGDVNRVMDGDLDEFINSYL 341
>gi|269925864|ref|YP_003322487.1| peptide chain release factor 2 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789524|gb|ACZ41665.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermobaculum
terrenum ATCC BAA-798]
Length = 372
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 168/322 (52%), Gaps = 11/322 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA--EMEAIDYGLFKRAYRA 64
LW DP ++ +V+ L D + + + E+A+++ LA E A D+ RA
Sbjct: 44 LWADPAEAQKVMKNLNDLKDQLEVWSKIERRLEDAEVLLDLAYEEDSASDFHEAASQIRA 103
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ L+ E+ LL G D E A + I A GI + WA L+ MY+RWA + G++
Sbjct: 104 ---LENQLNHLELELLLSGSYDQEDAIIAIHAREGGIDAQDWASMLVRMYLRWAQRRGWQ 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLACVDV 182
+V + G KSATIE + +YA+GY E G H L+ H + A V+V
Sbjct: 161 AELVSSIEGEEAGYKSATIEIKGKYAYGYAKAEAGQHRLVRLSPFDQAHRRHTSFALVEV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P ET P++QI +EDL + + S G+ + A I HIPTGI V ER+ F
Sbjct: 221 LPDVEET-PEVQIREEDLKIDTYRASSAGGQHVNKTSSAVRITHIPTGIVVTCQNERSQF 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK AL L+A+LL + + + +K E I W + R YV HPY +V+D +TG
Sbjct: 280 QNKETALKILRARLLELELRRQAEEQARLKGEHIATGWGSQIRSYVLHPYTMVKDHRTGY 339
Query: 300 QLPDFNSVLDGNIKPFIEAHIN 321
++ D SVLDG I PFIEA+++
Sbjct: 340 EVSDVESVLDGEIDPFIEAYLS 361
>gi|159036572|ref|YP_001535825.1| peptide chain release factor 2 [Salinispora arenicola CNS-205]
gi|189040003|sp|A8M3R1.1|RF2_SALAI RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|157915407|gb|ABV96834.1| peptide chain release factor 2 [Salinispora arenicola CNS-205]
Length = 373
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 174/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ + L DLR + ++ +++ +LAE E+ D G+
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEITKLTDLRSRLDDTQVLLELAEAES-DPGVLTEVAAEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLAKSIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ ++ S G+ + A I HIPTGI V E++
Sbjct: 223 PV-VEQTDHIDIPENEMRTDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ + + +K +A W + R YV HPY++V+D++T +
Sbjct: 282 NKASALRVLQARLLERKRQEEQAKLQGLKTDA-AGSWGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+SV DG + FIEA I R+
Sbjct: 341 TGSPSSVFDGELDAFIEAGIRWRK 364
>gi|302390246|ref|YP_003826067.1| peptide chain release factor 2 (bRF-2) [Thermosediminibacter oceani
DSM 16646]
gi|302200874|gb|ADL08444.1| bacterial peptide chain release factor 2 (bRF-2)
[Thermosediminibacter oceani DSM 16646]
Length = 365
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 168/322 (52%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD + ++L L + V + ++ K E+ + +L +E D GL+ +
Sbjct: 43 NFWDDAQAAQKILQTLNQLKETVEKFEAIKKKWEDLMTLIELG-IEDHDEGLYGEISAEA 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K ++ + LLRG D A +++ AG+ G + W + LL MY RWA+ +GY+
Sbjct: 102 EEFKKEFEEMRLKTLLRGRYDKNNAILSLHAGAGGTEAQDWVQMLLRMYTRWAEDKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSATI E YA+GYL E G H L+ + + + A VDV+
Sbjct: 162 KVLDMLPGEEAGIKSATILVEGPYAYGYLKSEQGVHRLVRISPFDAAGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E +++I EDL F S G+ + + A I HIPTGI V ER+ +
Sbjct: 222 P-EIEDDIEVEIKPEDLKIETFRSGGAGGQYVNKTESAVRITHIPTGIVVTCQNERSQQS 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+AKL + E+ ++ ++ E W + R YV HPY LV+D +T ++
Sbjct: 281 NRNTAMKLLRAKLFNLYLEEQQKKINELRGEQKEIAWGNQIRSYVFHPYSLVKDHRTNVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
+ + +V+DG I FI A++ S
Sbjct: 341 VGNVQAVMDGEIDMFINAYLKS 362
>gi|108798578|ref|YP_638775.1| peptide chain release factor 2 [Mycobacterium sp. MCS]
gi|119867678|ref|YP_937630.1| peptide chain release factor 2 [Mycobacterium sp. KMS]
gi|123070429|sp|Q1BBL5.1|RF2_MYCSS RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|166225110|sp|A1UDD2.1|RF2_MYCSK RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|108768997|gb|ABG07719.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp.
MCS]
gi|119693767|gb|ABL90840.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp.
KMS]
Length = 371
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 181/334 (54%), Gaps = 15/334 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V E
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKVAAMRVLQAKLLARKKQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+T ++ + ++VLDG+I F+EA I R D D
Sbjct: 338 RTEYEVGNPSAVLDGDIDGFLEAGIRWRNRRDDD 371
>gi|383820469|ref|ZP_09975725.1| peptide chain release factor 2 [Mycobacterium phlei RIVM601174]
gi|383334859|gb|EID13292.1| peptide chain release factor 2 [Mycobacterium phlei RIVM601174]
Length = 368
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 179/329 (54%), Gaps = 16/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD ++ +V L+ + + ++DLR + ++ ++ +LA E G A
Sbjct: 43 NLWDDQARAQKVTSDLSHAQGELRRVEDLRRRLDDLPVLYELAAEE----GGADELAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELKKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHN 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V+D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YSVEVLDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V E+
Sbjct: 218 VEVLPV-VETTDHIDIPETDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NKM A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++
Sbjct: 277 SQLQNKMSAMRVLQAKLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + ++VLDG+I F+EA I R+S
Sbjct: 336 TEYEVGNPSAVLDGDIDGFLEAGIRWRKS 364
>gi|408531516|emb|CCK29690.1| Peptide chain release factor 2 [Streptomyces davawensis JCM 4913]
Length = 352
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 28 SLWDDPDEAQKITSKLSHLQAEVRKTEALRGRIDDLAVLFEMAE-EEDDPDTRAEAESEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ GY+
Sbjct: 87 ASVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEQLQRMYLRWAERHGYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 ELIETSYAEEAGIKSTTFSVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 207 PV-VEQTDHIDIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 265
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 266 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 324
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + SVLDG I F+EA I R+ +
Sbjct: 325 VGNPQSVLDGEIDGFLEAGIRWRKQQE 351
>gi|271962992|ref|YP_003337188.1| peptide chain release factor 2 [Streptosporangium roseum DSM 43021]
gi|270506167|gb|ACZ84445.1| peptide chain release factor 2 [Streptosporangium roseum DSM 43021]
Length = 372
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 176/328 (53%), Gaps = 8/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V KL+ VN ++ L + E+ ++ +LA E D + A R
Sbjct: 44 DLWNDQEHAQKVTSKLSYLQGEVNRVESLGQRLEDLTVLYELAAAED-DEETREEADREL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + E+ LL G D A VTI + + G+ WA+ LL MY+RWA+++GY
Sbjct: 103 ASLKSDIGALEVRTLLSGEYDAREAVVTINSQAGGVDAADWAQMLLRMYIRWAERKGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G L GE G H L+ + + + A VDVV
Sbjct: 163 EVYETSYAEEAGIKSATFTVKAPYAYGTLRGEHGTHRLVRISPFDNQGRRQTSFAGVDVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +ET+ + I+++DL ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VETTDHIDINEDDLRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L++KLL ++ + ++ I+ EA + W + R YV HPY++V+D++TG +
Sbjct: 282 NKATAMAVLQSKLLERKRQEEAAALNEIRGEATTS-WGTQIRNYVLHPYQIVKDLRTGTE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ +SVLDG++ FIE+ I R ++
Sbjct: 341 AGNPSSVLDGDLDEFIESEIRWTRRQES 368
>gi|163840102|ref|YP_001624507.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC
33209]
gi|229470354|sp|A9WPT6.1|RF2_RENSM RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|162953578|gb|ABY23093.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC
33209]
Length = 374
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 176/323 (54%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ +V KL+ + + L+ L + ++ +++ +LAE E D A +
Sbjct: 47 DLWDNPAEAQKVTSKLSHAQSKLERLETLTARIDDLEVLVELAESEH-DEDSLAEASKEL 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 106 VSLQKSLQELEVVTLLAGEYDEREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYPT 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 166 SVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D D+ +F S G+ + A + H+PTG V E++
Sbjct: 226 PL-IEQTDSIEIPDNDIRVDVFRSSGPGGQSVNTTDSAVRLTHLPTGTVVSMQNEKSQLQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A L+++LL++ +Q + + + + W + R YV +PY++V+D++T +
Sbjct: 285 NRAAATRVLQSRLLLLKKQQEDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 343
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + + VLDG+I FI+A I R
Sbjct: 344 VGNTSGVLDGDIDDFIDAGIRWR 366
>gi|415720929|ref|ZP_11468173.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Bmash]
gi|388061190|gb|EIK83847.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Bmash]
Length = 373
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 170/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+AK + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDAKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GAIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|414872707|tpg|DAA51264.1| TPA: hypothetical protein ZEAMMB73_478053 [Zea mays]
Length = 289
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 130/209 (62%), Gaps = 7/209 (3%)
Query: 100 GICPEI--WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157
G+C + WA+ LL MYVRW +K+ Y+ RVV+K + G+KSAT+E E YA+GYLSGE
Sbjct: 23 GLCSYLADWADMLLRMYVRWGEKQRYKTRVVEKSPGEQAGIKSATVELEGRYAYGYLSGE 82
Query: 158 TGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSI 214
G H ++ N + + A V+V+PL E S + I +EDL S G+ Q++
Sbjct: 83 KGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNV 142
Query: 215 AKPAACIQ--HIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREA 272
K ++ HIPTGIAV+ ER+ ANK+KAL+RLKAKLLVI EQ S + I+ +
Sbjct: 143 NKVETAVRMVHIPTGIAVRCSEERSQLANKIKALSRLKAKLLVIALEQRASEIKQIRGDI 202
Query: 273 IVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ W ++ R YV HPYKLV+DV+TG L
Sbjct: 203 VKAEWGQQIRNYVFHPYKLVKDVRTGSNL 231
>gi|126434177|ref|YP_001069868.1| peptide chain release factor 2 [Mycobacterium sp. JLS]
gi|166225109|sp|A3PWV0.1|RF2_MYCSJ RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|126233977|gb|ABN97377.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp.
JLS]
Length = 371
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 181/334 (54%), Gaps = 15/334 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V E
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKVAAMRVLQAKLLARKKQEERAALDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+T ++ + ++VLDG+I F+EA I R D D
Sbjct: 338 RTEYEVGNPSAVLDGDIDGFLEAGIRWRNRRDDD 371
>gi|383776055|ref|YP_005460621.1| putative peptide chain release factor 2 [Actinoplanes missouriensis
431]
gi|381369287|dbj|BAL86105.1| putative peptide chain release factor 2 [Actinoplanes missouriensis
431]
Length = 370
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 175/324 (54%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ EV +LA ++ L+ LR + ++A L+ ++AE E+ D G
Sbjct: 44 DLWDDQARAQEVNSRLAYVSGEISKLERLRSRLDDAGLLLEMAEAES-DEGSIAEVGDEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +++ E+ LL G D A V I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 TTLTKAVEEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YAFG LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYDTSYAEEAGLKSATFAVKVPYAFGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVM 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI E++
Sbjct: 223 PV-VEQTDHIDIPDNEIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVASCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+A+LL ++ + ++ +K++ W + R YV HPY++V+D++T +
Sbjct: 282 NKAAAMRVLQARLLERKRQEDAAKMADLKQD-TTGSWGDQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ + V DG++ FI+A I R+
Sbjct: 341 VGNPTGVFDGDLDGFIQAGIKWRK 364
>gi|330465934|ref|YP_004403677.1| peptide chain release factor 2 [Verrucosispora maris AB-18-032]
gi|328808905|gb|AEB43077.1| peptide chain release factor 2 [Verrucosispora maris AB-18-032]
Length = 373
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 175/324 (54%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ + L LR + ++A ++ +LAE EA D G+
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEIEKLGSLRSRIDDANVLLELAEAEA-DSGVLSEVESEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLAKAIQEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ ++ S G+ + A I HIPTGI V E++
Sbjct: 223 PV-VEQTDSIDIPENEMRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ + ++ +K +A W + R YV HPY++V+D++T +
Sbjct: 282 NKASALRVLQARLLERKRQEEQAKMAGLKTDA-AGSWGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ ++V DG++ FIEA I R+
Sbjct: 341 TGNPSAVFDGDLDSFIEAGIRWRK 364
>gi|298252599|ref|ZP_06976393.1| protein chain release factor B [Gardnerella vaginalis 5-1]
gi|297532963|gb|EFH71847.1| protein chain release factor B [Gardnerella vaginalis 5-1]
Length = 378
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 170/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GNIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|269955834|ref|YP_003325623.1| peptide chain release factor 2 [Xylanimonas cellulosilytica DSM
15894]
gi|269304515|gb|ACZ30065.1| peptide chain release factor 2 [Xylanimonas cellulosilytica DSM
15894]
Length = 370
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 14/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ L+ + +N +K L + ++ + + +L + E D A
Sbjct: 44 DLWDDPEAAQKITSALSATQAELNRVKSLGRRIDDVETLVELGQ-EMGDEDSLTEAEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K LD E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 103 VGIRKDLDALEVRTLLSGEYDARDAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGFPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YAFG LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGLKSATFEVNAPYAFGNLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 223 PL-IEQTDSVEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ ++ + K+E +I W + R YV PY++V+D++T
Sbjct: 282 NRAAALRVLQSRLLLVRQQEEAAK----KKELAGDIKASWGDQMRSYVLQPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+ + +V DG I FIEA I RR++
Sbjct: 338 EHESGNTAAVFDGAIDEFIEAGIRWRRNA 366
>gi|297571771|ref|YP_003697545.1| peptide chain release factor 2 [Arcanobacterium haemolyticum DSM
20595]
gi|296932118|gb|ADH92926.1| peptide chain release factor 2 [Arcanobacterium haemolyticum DSM
20595]
Length = 376
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 174/339 (51%), Gaps = 34/339 (10%)
Query: 6 NLWDDPTKSNEV-------------LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA 52
+LWDDP K+ V +VK+ + + + L D+ + E+ A AE+ A
Sbjct: 43 DLWDDPEKAQGVTSQLSHAQSELDRVVKMGERVADLETLYDMAVEESESD-AAMGAELFA 101
Query: 53 IDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
G +R V L + E+ LL G D A VTI++G+ G+ WA+ L
Sbjct: 102 EVDGELER-------VRTDLSELEIKTLLSGEYDERDAVVTIRSGAGGVDAADWAQMLQR 154
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY+RWA++ GY+ +V+D + G+KS T E YA+G LS E G H L+ +
Sbjct: 155 MYLRWAERRGYKTKVMDTSYAEEAGIKSTTFEVSAPYAYGTLSVEAGTHRLVRISPFDNQ 214
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+ + A V+V+PL +ET+ + I + +L +F S G+ + A + HIPTG
Sbjct: 215 GRRQTSFAAVEVIPL-IETTDHIDIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTG 273
Query: 228 IAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRY 284
I V E++ N+ AL L+++LL E+ + IK+E ++ W + R Y
Sbjct: 274 IVVSMQDEKSQIQNRAAALRVLQSRLLQKRHEEE----AAIKKELAGDVKGAWGDQMRSY 329
Query: 285 VSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
V HPY++V+D++TG ++ + SV DG+I FI+A I R
Sbjct: 330 VLHPYQMVKDLRTGFEVGNTESVFDGDIDGFIDAGIRWR 368
>gi|283783522|ref|YP_003374276.1| peptide chain release factor 2 [Gardnerella vaginalis 409-05]
gi|283441040|gb|ADB13506.1| peptide chain release factor 2 [Gardnerella vaginalis 409-05]
Length = 378
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 170/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GNIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|415703468|ref|ZP_11459284.1| peptide chain release factor 2 [Gardnerella vaginalis 284V]
gi|415716587|ref|ZP_11466579.1| peptide chain release factor 2 [Gardnerella vaginalis 1400E]
gi|388052508|gb|EIK75530.1| peptide chain release factor 2 [Gardnerella vaginalis 284V]
gi|388057204|gb|EIK80037.1| peptide chain release factor 2 [Gardnerella vaginalis 1400E]
Length = 380
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 170/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GNIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|423351149|ref|ZP_17328800.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
gi|404386822|gb|EJZ81959.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
Length = 358
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 174/330 (52%), Gaps = 13/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + + LK+LR + ++ +IA LAE E +
Sbjct: 32 ELWDDPPHAQQVTTELSATQAKLRRLKELRQRVDDLPVIADLAEEEG-----EPETFTEE 86
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + +D+ E++ LL G D A +TI++G+ G+ WAE L+ MY RWA++ ++
Sbjct: 87 LDSLRAAVDRLEVTTLLSGEYDEREAVITIRSGAGGVDAADWAEMLMRMYTRWAERHDHQ 146
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V
Sbjct: 147 VEVFDVSYAEEAGIKSATFVVHGEYMYGELSVEQGAHRLVRLSPFDNQNRRQTSFAEVEV 206
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +E + + I + ++ ++ S G+ + A + H+PTGI V E++
Sbjct: 207 LPV-VEQTDHIDIPESEIRVDVYRSSGPGGQSVNTTDSAVRMTHLPTGIVVTCQNEKSQI 265
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ AL L+AKLL ++ + + + + W + R YV HPY++V+D++TG+
Sbjct: 266 QNRASALKVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTGV 324
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ D + VL G+I F+EA I R+ D
Sbjct: 325 EVNDPDRVLGGDIDRFLEAGIRWRKEQQED 354
>gi|254411738|ref|ZP_05025514.1| peptide chain release factor 2 [Coleofasciculus chthonoplastes PCC
7420]
gi|196181460|gb|EDX76448.1| peptide chain release factor 2 [Coleofasciculus chthonoplastes PCC
7420]
Length = 305
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 155/265 (58%), Gaps = 9/265 (3%)
Query: 64 ASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A +V KL LD++E+ +LL GP D GA + I AG+ G + WAE LL MY RWA+
Sbjct: 35 AQTNVVKLNRELDRWELEQLLSGPYDANGAVLAINAGAGGTDAQDWAEMLLRMYTRWAEN 94
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+GY+ ++ + G+KSAT+E + A+GYL E G H L+ N + + + A
Sbjct: 95 QGYKVQLAEFSEGDEAGIKSATLEIQGLRAYGYLKAEKGTHRLVRISPYNANGKRQTSFA 154
Query: 179 CVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGE 235
V+V+P+ E DL I + DL ++ G+ Q++ K A ++HIPT IAV+ E
Sbjct: 155 GVEVMPILNE-DVDLDIPETDLEITTSRSGGKGGQNVNKVETAVRVKHIPTDIAVRCTQE 213
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ NK KAL LKAKLLVI EQ ++ I+ + + W + R YV HPY+LV+D+
Sbjct: 214 RSQLQNKEKALALLKAKLLVIAQEQRAQEIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDL 273
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T ++ + VL+G + PFIEA++
Sbjct: 274 RTNVETTGVDDVLNGTLDPFIEAYL 298
>gi|386846030|ref|YP_006264043.1| Peptide chain release factor 2 [Actinoplanes sp. SE50/110]
gi|359833534|gb|AEV81975.1| Peptide chain release factor 2 [Actinoplanes sp. SE50/110]
Length = 381
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 177/328 (53%), Gaps = 8/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ ++ L+ LR + ++A L+ ++AE E D G
Sbjct: 55 DLWDDQARAQDVNSRLSYVSGEISKLERLRTRLDDAGLLLEMAEAEG-DAGSVAEVGDEI 113
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +++ E+ LL G D A V I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 114 TALTKAIEEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 173
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 174 EVYDTSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVM 233
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D +L ++ S G+ + A + HIPTGI V E++
Sbjct: 234 PV-VEQTDHIDIPDNELRTDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQ 292
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ + ++ +K++ W + R YV HPY++V+D++T +
Sbjct: 293 NKASALRVLQARLLERKRQEEEAKMAGLKQDT-TGSWGDQMRSYVLHPYQMVKDLRTEFE 351
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ SV DG++ FIEA I R+ + +
Sbjct: 352 TGNPMSVFDGDVDGFIEAGIRWRKQNQS 379
>gi|413948643|gb|AFW81292.1| hypothetical protein ZEAMMB73_079544 [Zea mays]
Length = 377
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 130/209 (62%), Gaps = 7/209 (3%)
Query: 100 GICPEI--WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157
G+C + WA+ LL MYVRW +K+ Y+ RVV+K + G+KSAT+E E YA+GYLSGE
Sbjct: 111 GLCSYLADWADMLLRMYVRWGEKQRYKTRVVEKSPGEQAGIKSATVELEGRYAYGYLSGE 170
Query: 158 TGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSI 214
G H ++ N + + A V+V+PL E S + I +EDL S G+ Q++
Sbjct: 171 KGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNV 230
Query: 215 AKPAACIQ--HIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREA 272
K ++ HIPTGIAV+ ER+ ANK+KAL+RLKAKLLVI EQ S + I+ +
Sbjct: 231 NKVETAVRMVHIPTGIAVRCSEERSQLANKIKALSRLKAKLLVIALEQRASEIKQIRGDI 290
Query: 273 IVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ W ++ R YV HPYKLV+DV+TG L
Sbjct: 291 VKAEWGQQIRNYVFHPYKLVKDVRTGSNL 319
>gi|291522080|emb|CBK80373.1| bacterial peptide chain release factor 2 (bRF-2) [Coprococcus catus
GD/7]
Length = 336
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 160/325 (49%), Gaps = 7/325 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ WD+ K+N + +L + V L E+ + + ++ E D L
Sbjct: 1 MMEEPGFWDNADKANNSMKELKNLKDTVEEYHRLETAWEDVETLLEMG-YEENDASLIPE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A D K + + LL D + A VT+ AG+ G W L MY RWA+K
Sbjct: 60 VQEAMADFEKRFEHLRIKTLLSEEYDGDNAIVTLHAGAGGTEACDWVSMLFRMYTRWAEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G+ V+D + G+KS T+E E A+GY+ E G H L+ N + + + A
Sbjct: 120 HGFTTTVLDYLDGEEAGIKSVTVEIAGENAYGYMKSEKGIHRLVRISPFNAAGKRQTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P +E D++I+++DL + S G+ + A I H+PT I VQ E
Sbjct: 180 SCDVMP-DIEEDLDIEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTNIVVQCQNE 238
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ NK KA+ LKAKL ++ ++ +S I+ E N W + R YV PYKLV+D
Sbjct: 239 RSQHMNKDKAMQMLKAKLYLLKQQENQEKLSGIRGEVKDNAWGSQIRSYVMQPYKLVKDH 298
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+TG + + ++V+DG+I FI A++
Sbjct: 299 RTGAESSNVDAVMDGDIDLFINAYL 323
>gi|297562654|ref|YP_003681628.1| peptide chain release factor 2 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847102|gb|ADH69122.1| peptide chain release factor 2 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 372
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 171/324 (52%), Gaps = 8/324 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW D + +V +L+ +VN + + + ++ ++ +LAE E D A R
Sbjct: 45 LWADQDNAQKVTRQLSSLESMVNKINGIGQRLDDLGVLYELAEAED-DADTRVEADRELD 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + + E+ LL GP+D A VTI + + G+ WA+ L MY+RWA++ GY
Sbjct: 104 QLRKEIGELEVRTLLNGPHDEREAIVTINSQAGGVDAADWAQMLQRMYLRWAERHGYPTD 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V + + G+KS + + +A+G L GE G H L+ + + + A VDVVP
Sbjct: 164 VYETSYAEEAGIKSTSFAVKTPFAYGTLRGEHGTHRLVRISPFDNQNRRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +E S ++I D DL ++ S G+ + A I H+PTGI V ER+ N
Sbjct: 224 V-VEQSDHIEIDDGDLRVDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A++ L+AKLL E+ + + I+ ++ V+ W + R YV HPY+ V+DV+TG +
Sbjct: 283 KATAMSMLQAKLLARKREEEQAALDEIRGDS-VSSWGTQMRNYVLHPYQSVKDVRTGAET 341
Query: 302 PDFNSVLDGNIKPFIEAHINSRRS 325
+ + VLDG+I FI+A I RS
Sbjct: 342 GNTSGVLDGDIDEFIDAEIRWMRS 365
>gi|224475896|ref|YP_002633502.1| peptide chain release factor RF-2, major part [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420503|emb|CAL27317.1| peptide chain release factor RF-2, major part [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 333
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 166/329 (50%), Gaps = 8/329 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + N WDD K+ E++ K VVN +DL + E+ +L E D L
Sbjct: 1 MMTDPNFWDDQNKAQEIIDKNNALKHVVNGYRDLEAELEDMSATHELL-AEEFDEDLKAD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LDQ+E+ LL GP D A + + G+ G + WA LL MY R+A++
Sbjct: 60 LEEEANAFKDKLDQFELQLLLNGPYDANNAILELHPGAGGTESQDWASMLLRMYQRYAEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+G++ D GVKS T+ + A+GYL E G H L+ F + H + +
Sbjct: 120 QGFKVEFADYLPGDEAGVKSVTLVIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 179
Query: 178 ACVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
+C DV+P F +++++ +D+ F + G+ + + A I H PTGI V +
Sbjct: 180 SC-DVIPEFSNNEIEIEVNPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQN 238
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 239 ERSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKD 298
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T + + N+V+DG I PFIEA++ ++
Sbjct: 299 HRTNEETGNVNAVMDGEIGPFIEAYLRTQ 327
>gi|258651861|ref|YP_003201017.1| peptide chain release factor 2 [Nakamurella multipartita DSM 44233]
gi|258555086|gb|ACV78028.1| peptide chain release factor 2 [Nakamurella multipartita DSM 44233]
Length = 369
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 177/329 (53%), Gaps = 11/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + +KDLR + ++ +++ +L + D + A +
Sbjct: 43 DLWNDQENAQKVTSRLSHAQAELKRIKDLRQRLDDLEVLFELGDE---DPDTYLEAQQEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + K +D E+ LL G D A VTI++ + G+ +AE L+ MY+RW+++ GY
Sbjct: 100 LGLQKEIDAQEVRTLLSGEYDEREALVTIRSEAGGVDAADFAEMLMRMYLRWSERHGYNT 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KS T + + YA+G LS E G H L+ + + + A V+V
Sbjct: 160 EVYDTSYAEEAGIKSTTFQVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVA 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +ETS + + ++DL ++ S G+ + A I H+PTGI V ER+
Sbjct: 220 PV-VETSDHVDVDEKDLRVDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L++KLL ++ + + +K N W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMAVLQSKLLERRRQEERAVMDALKDTG--NSWGNQMRSYVLHPYQMVKDLRTNFE 336
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG I FIEA I RRS++ +
Sbjct: 337 VGNPSAVFDGEIDDFIEAGIRWRRSTEAE 365
>gi|385801583|ref|YP_005837986.1| peptide chain release factor 2 [Gardnerella vaginalis HMP9231]
gi|415707102|ref|ZP_11461949.1| peptide chain release factor 2 [Gardnerella vaginalis 0288E]
gi|333393731|gb|AEF31649.1| peptide chain release factor 2 [Gardnerella vaginalis HMP9231]
gi|388054102|gb|EIK77047.1| peptide chain release factor 2 [Gardnerella vaginalis 0288E]
Length = 380
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GSIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|415719555|ref|ZP_11467715.1| peptide chain release factor 2 [Gardnerella vaginalis 1500E]
gi|388059080|gb|EIK81840.1| peptide chain release factor 2 [Gardnerella vaginalis 1500E]
Length = 380
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GSIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|269128206|ref|YP_003301576.1| peptide chain release factor 2 [Thermomonospora curvata DSM 43183]
gi|268313164|gb|ACY99538.1| peptide chain release factor 2 [Thermomonospora curvata DSM 43183]
Length = 378
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 173/330 (52%), Gaps = 10/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+LW D ++ +V +L+ +N + LR + E+ + +LAE M+ D A
Sbjct: 44 DLWSDQERAQQVTRRLSYLENELNRVTSLRQRLEDVATLYELAEEMDDADTRAEADAELE 103
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
SL K + Q E+ L+ G D A +TI A + G+ WA+QL MY+RWA++ GY
Sbjct: 104 SL--RKDIQQLEVRTLMSGEYDHREALITINAQAGGVDAADWAQQLQRMYLRWAERHGYP 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ + + G+KS T + YA+G L GE G H L+ + + + A +DV
Sbjct: 162 TEIYETSYAEEAGIKSTTFAVKAPYAYGTLRGEHGTHRLVRISPFDNQGRRQTSFAGLDV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP+ +E S +++ + DL ++ S G+ + A I HIPTGI V ER+
Sbjct: 222 VPV-VEQSDHVEVDENDLRIDVYRSSGPGGQGVNTTDSAVRITHIPTGIVVSCQNERSQL 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ LKAKLL ++ + ++ ++ E + W + R YV HPY++V+D++TG+
Sbjct: 281 QNKATAMAVLKAKLLERKRQEEAAKMADLRGEGTSS-WGTQIRNYVLHPYQIVKDLRTGV 339
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + +VLDG I FIEA I R +++
Sbjct: 340 ESGNPAAVLDGEIDEFIEAEIRWLRQRESE 369
>gi|395237481|ref|ZP_10415549.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
gi|394487252|emb|CCI83637.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
Length = 369
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 174/329 (52%), Gaps = 13/329 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + + LK+LR + ++ +IA LAE E + L
Sbjct: 44 LWDDPPHAQQVTTELSATQAKLRRLKELRQRVDDLPVIADLAEEEG-----EPETFTEEL 98
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + +D+ E++ LL G D A +TI++G+ G+ WAE L+ MY RWA++ ++
Sbjct: 99 DSLRAAVDRLEVTTLLSGEYDEREAVITIRSGAGGVDAADWAEMLMRMYTRWAERHDHQV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 EVFDVSYAEEAGIKSATFVVHGEYMYGELSVEQGAHRLVRLSPFDNQNRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ ++ S G+ + A + H+PTGI V E++
Sbjct: 219 PV-VEQTDHIDIPESEIRVDVYRSSGPGGQSVNTTDSAVRMTHLPTGIVVTCQNEKSQIQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL L+AKLL ++ + + + + W + R YV HPY++V+D++TG++
Sbjct: 278 NRASALKVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTGVE 336
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ D + VL G+I F+EA I R+ D
Sbjct: 337 VNDPDRVLGGDIDRFLEAGIRWRKEQQED 365
>gi|397690960|ref|YP_006528214.1| peptide chain release factor 2 [Melioribacter roseus P3M]
gi|395812452|gb|AFN75201.1| peptide chain release factor 2 [Melioribacter roseus P3M]
Length = 329
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 164/320 (51%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D ++ +L K V+ +L+ K + + +L + E D +
Sbjct: 6 DFWSDQKRAQSLLQKSKSLQNWVDLWNELKEKVDHIEEFVELVKAEE-DESFITEIDKEL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ KL + E+ +L G +D + +TI +G+ G + W+E L+ MY+RW ++ GY+
Sbjct: 65 TEAEKLYSELELKSMLSGKDDDKNCILTIHSGAGGTEAQDWSEMLMRMYMRWGEQNGYKM 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KSATIE E YA+GYL ETG H L+ + + + A V V+
Sbjct: 125 SIIDYLEGDGAGIKSATIEVEGLYAYGYLKAETGVHRLVRISPFDANKRRHTSFASVFVI 184
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ S D++I+ DL + S G+ + + A I HIPTG+ ER+
Sbjct: 185 PE-VDDSIDIEINPADLRIDTYRSGGKGGQNVNKVETAVRITHIPTGVVAACQSERSQLQ 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ LK+KL + E+ + ++ I++ + W + R YV HPY LV+D +TG +
Sbjct: 244 NKTNAMKLLKSKLYQLELEKQQAELNEIEKNKMKIEWGSQIRSYVFHPYNLVKDHRTGYE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D SV+DGNI FI+ ++
Sbjct: 304 TSDTQSVMDGNINEFIKQYL 323
>gi|404419999|ref|ZP_11001748.1| peptide chain release factor 2 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403660566|gb|EJZ15129.1| peptide chain release factor 2 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 372
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 181/333 (54%), Gaps = 13/333 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD +++ +V +L+ + + ++DLR + ++ ++ +LA EA G A A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQSEMRRVQDLRQRVDDLPVLFELAFEEAGAEGDDAVA-EAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 102 AELVKLREEIETLEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAD 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V E+
Sbjct: 221 VEVLPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 279
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+A+LL ++ + + +K + + W + R YV HPY++V+D++
Sbjct: 280 SQLQNKVAAMRVLQARLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
T ++ + +VLDG+I F+EA I R D D
Sbjct: 339 TEYEVGNPATVLDGDIDGFLEAGIRWRNRKDDD 371
>gi|374583718|ref|ZP_09656812.1| peptide chain release factor 2 [Desulfosporosinus youngiae DSM
17734]
gi|374419800|gb|EHQ92235.1| peptide chain release factor 2 [Desulfosporosinus youngiae DSM
17734]
Length = 368
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 167/325 (51%), Gaps = 6/325 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +++ +L+ V ++L+ + EE + QLA +E D L +
Sbjct: 43 DLWDDPVNAQKIMQELSLHQGKVKTYEELKQELEETSTLWQLA-VEEDDVSLEPDIEQGI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL GP D A +T+ AG+ G + W + L +Y+RW ++ GY+
Sbjct: 102 EALKQRFEALELELLLSGPYDRNNAILTLHAGAGGTEAQDWVQMLYRLYIRWGERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KSAT+ F E A+GY E G H L+ + S + A VDV+
Sbjct: 162 ETLDFLHGEEAGIKSATLSFSGENAYGYAKSEKGVHRLVRISPFDASGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E + ++ I EDL + S G+ + A I H+PTGI VQ ER+
Sbjct: 222 PEVAEDNDEIPIDAEDLRIDTYRSGGAGGQHVNKTDSAIRITHLPTGIVVQCQSERSQTQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL + ++ + +S I+ E W + R YV HPY LV+D +T ++
Sbjct: 282 NKAAAMRVLQAKLLELKRKEQEAEISEIRGEQQEIAWGSQIRSYVFHPYSLVKDHRTNVE 341
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ ++V+DG I FI A + ++
Sbjct: 342 TGNVSAVMDGEIDAFIAAFLQKTKT 366
>gi|308235215|ref|ZP_07665952.1| peptide chain release factor 2 [Gardnerella vaginalis ATCC 14018 =
JCM 11026]
gi|311114816|ref|YP_003986037.1| peptide chain release factor RF2 [Gardnerella vaginalis ATCC 14019]
gi|415711540|ref|ZP_11464277.1| peptide chain release factor 2 [Gardnerella vaginalis 55152]
gi|417556586|ref|ZP_12207643.1| peptide chain release factor 2 [Gardnerella vaginalis 315-A]
gi|310946310|gb|ADP39014.1| peptide chain release factor RF2 [Gardnerella vaginalis ATCC 14019]
gi|333602274|gb|EGL13704.1| peptide chain release factor 2 [Gardnerella vaginalis 315-A]
gi|388058374|gb|EIK81171.1| peptide chain release factor 2 [Gardnerella vaginalis 55152]
Length = 380
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSDHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GSIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|310287040|ref|YP_003938298.1| peptide chain release factor 2 with RF-1 domain [Bifidobacterium
bifidum S17]
gi|311063912|ref|YP_003970637.1| peptide chain release factor 2 (RF-2) PrfB [Bifidobacterium bifidum
PRL2010]
gi|313139738|ref|ZP_07801931.1| peptide chain release factor 2 [Bifidobacterium bifidum NCIMB
41171]
gi|390936387|ref|YP_006393946.1| peptide chain release factor [Bifidobacterium bifidum BGN4]
gi|421733301|ref|ZP_16172411.1| peptide chain release factor 2 [Bifidobacterium bifidum LMG 13195]
gi|421736387|ref|ZP_16175201.1| peptide chain release factor 2 [Bifidobacterium bifidum IPLA 20015]
gi|309250976|gb|ADO52724.1| peptide chain release factor 2 with RF-1 domain [Bifidobacterium
bifidum S17]
gi|310866231|gb|ADP35600.1| PrfB Bacterial Peptide Chain Release Factor 2 (RF-2)
[Bifidobacterium bifidum PRL2010]
gi|313132248|gb|EFR49865.1| peptide chain release factor 2 [Bifidobacterium bifidum NCIMB
41171]
gi|389890000|gb|AFL04067.1| peptide chain release factor [Bifidobacterium bifidum BGN4]
gi|407078815|gb|EKE51611.1| peptide chain release factor 2 [Bifidobacterium bifidum LMG 13195]
gi|407296325|gb|EKF15893.1| peptide chain release factor 2 [Bifidobacterium bifidum IPLA 20015]
Length = 375
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 170/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + + L + + E+ + + +LA+ EA D A
Sbjct: 44 GLWDDPENAQKVTSRLSAAQAQLKRLNEANRRIEDVETLVELAQEEA-DADSLSEAQSEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++
Sbjct: 103 GSIAQELDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PTGI V ER+
Sbjct: 223 PL-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 282 NRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGCE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+V DG+I FIEA I R
Sbjct: 341 TSQTQAVFDGDIDAFIEAGIRWR 363
>gi|415705167|ref|ZP_11460438.1| peptide chain release factor 2 [Gardnerella vaginalis 75712]
gi|388051889|gb|EIK74913.1| peptide chain release factor 2 [Gardnerella vaginalis 75712]
Length = 380
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GSIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|336321416|ref|YP_004601384.1| peptide chain release factor 2 [[Cellvibrio] gilvus ATCC 13127]
gi|336104997|gb|AEI12816.1| peptide chain release factor 2 [[Cellvibrio] gilvus ATCC 13127]
Length = 370
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 173/330 (52%), Gaps = 14/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V L+ + ++ + L + ++ + + +L + E D A
Sbjct: 44 NLWDDPESAQKVTSALSSAQAELDRVDKLGARIDDLETLVELGQ-EMGDEDTLVEAEADL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AAIRKDLGELEVRTLLAGEYDEREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+V+
Sbjct: 163 TVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 223 PL-IEQTDSIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL+ Q K+E +I W + R YV PY++V+D++T
Sbjct: 282 NRAAALRVLQSRLLL----QRQEEERAAKKEMAGDIKASWGDQMRSYVLQPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +V DG+I FIEA + RR+ D
Sbjct: 338 EHEVGNPAAVFDGDIDDFIEAGVRWRRAQD 367
>gi|294790676|ref|ZP_06755834.1| peptide chain release factor 2 [Scardovia inopinata F0304]
gi|294458573|gb|EFG26926.1| peptide chain release factor 2 [Scardovia inopinata F0304]
Length = 370
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 170/328 (51%), Gaps = 20/328 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDD + V +L+ + L DL + ++ IA L E+ E D A +
Sbjct: 45 LWDDQENAQLVTSRLSQTQNEAKRLDDLERRLDD---IATLYELGSEEDDQDSKAEAEKE 101
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
V L E+ LL G D A VTI++G+ G+ WA+ L+ MY+RWA++ Y+
Sbjct: 102 LTAVRSDLSDLEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYLRWAERHHYK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++D + G+KSAT E + YA+G LS E G H L+ F N S + + A V+
Sbjct: 162 VQIMDTSYAEEAGIKSATFEVDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVE 220
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E + + I D D+ + S G+ + A I HIPTGI V ER+
Sbjct: 221 VIPL-VEPTDHIDIPDSDIRVDTYMSHGPGGQGVNTTYSAVRITHIPTGIVVTMQDERSQ 279
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A++ L+++LLV+ E+ + K+E ++ W + R YV HPY++V+D+
Sbjct: 280 IQNRAAAMSVLQSRLLVMKQEEEAAK----KKELAGDVKASWGDQMRSYVLHPYQMVKDL 335
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+TG + D V DG+I FI+A I R
Sbjct: 336 RTGYETSDPQKVFDGDIDAFIDAGIRWR 363
>gi|256390605|ref|YP_003112169.1| peptide chain release factor 2 [Catenulispora acidiphila DSM 44928]
gi|256356831|gb|ACU70328.1| peptide chain release factor 2 [Catenulispora acidiphila DSM 44928]
Length = 368
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 170/324 (52%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ V KL+ +N L + E+ +++ +L + E D
Sbjct: 43 DLWDDQAKAQAVTSKLSGLQAELNRFSTLNRRLEDIEVLFELGQSEG-DEDALAEVQGEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+DVSK + + E+ LL G D A VT++A + G+ +AE LL MY RWA++ Y+
Sbjct: 102 VDVSKAVGELEVRTLLSGEYDAREALVTLRAEAGGVDAADFAEMLLRMYTRWAERHNYQY 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT+ + YA+G LS E G H L+ + + + A V+VV
Sbjct: 162 EVYDTSYAEEAGIKSATLTVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S + I +++L ++ S G+ + A I H+P+GI V ER+
Sbjct: 222 PV-VEQSDHVDIPEDELRVDVYRSSGPGGQGVNTTDSAVRITHLPSGIVVSCQNERSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+AKLL E+ + + +K ++ W + R YV HPY+LV+D++T +
Sbjct: 281 NRASAMAVLQAKLLQRRREEEQAKMDALKDDS-SGSWGNQMRSYVLHPYQLVKDLRTNYE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ +VLDG+I FIEA I R+
Sbjct: 340 TGNTTAVLDGDIDEFIEAGIRWRK 363
>gi|294786673|ref|ZP_06751927.1| peptide chain release factor 2 [Parascardovia denticolens F0305]
gi|420237326|ref|ZP_14741797.1| peptide chain release factor 2 [Parascardovia denticolens IPLA
20019]
gi|294485506|gb|EFG33140.1| peptide chain release factor 2 [Parascardovia denticolens F0305]
gi|391879597|gb|EIT88103.1| peptide chain release factor 2 [Parascardovia denticolens IPLA
20019]
Length = 377
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 169/327 (51%), Gaps = 16/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + V L+ S L + + ++ + L ME D + A+
Sbjct: 44 GLWDDPETAQRVTSNLSASQAEYKRLTEAGQRLDDIDTLYSLG-MEEEDEDSKQEAWSEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK L E+ LL G D A VTI++G+ G+ WA+ L+ MY+RWA++ Y+
Sbjct: 103 KKLSKDLSDIEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYIRWAERHQYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+V+D + G+KSAT + YA+G LS E G H L+ F N S + + A V+V
Sbjct: 163 QVIDTSYAEEAGIKSATFRVDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVEV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E + + + D D+ + S G+ + A + H+PTGI V ER+
Sbjct: 222 IPL-VEPTDHIDVPDSDVRVDTYMSHGPGGQGVNTTYSAVRLTHLPTGIVVTMQDERSQI 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ A+ L+++LLV+ E+ + K+E +I W + R YV HPY++V+D++
Sbjct: 281 QNRAAAMAVLQSRLLVLKQEEEAAK----KKELAGDIKASWGDQMRSYVLHPYQMVKDLR 336
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG + D +V DG+I FI+A I R
Sbjct: 337 TGYETSDPQAVFDGDIDGFIDAGIRWR 363
>gi|395203753|ref|ZP_10394846.1| peptide chain release factor 2 [Propionibacterium humerusii P08]
gi|422439222|ref|ZP_16516045.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA3]
gi|422470709|ref|ZP_16547209.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA2]
gi|422574464|ref|ZP_16650018.1| peptide chain release factor 2 [Propionibacterium acnes HL044PA1]
gi|313837551|gb|EFS75265.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA2]
gi|314927570|gb|EFS91401.1| peptide chain release factor 2 [Propionibacterium acnes HL044PA1]
gi|314972490|gb|EFT16587.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA3]
gi|328907839|gb|EGG27602.1| peptide chain release factor 2 [Propionibacterium humerusii P08]
Length = 371
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 173/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQWVTSRLSALQAEIERLERLRARIEDVHVLLEFATADD-DKESLTEATSET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY+
Sbjct: 106 VKLREEIDALEVRILLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +++G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFSYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 226 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 285 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI A I RR ++TD
Sbjct: 343 VGNTDAVFDGDIDDFIGAGIRWRRKNETD 371
>gi|398785517|ref|ZP_10548476.1| peptide chain release factor 2 [Streptomyces auratus AGR0001]
gi|396994386|gb|EJJ05426.1| peptide chain release factor 2 [Streptomyces auratus AGR0001]
Length = 368
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 175/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ V + LR + ++ +++ +LAE E D A
Sbjct: 44 SLWDDPESAQKVTSRLSYLQGQVRRAEQLRSRVDDLEVLFELAEAED-DEDARAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K +++ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TDVRKAVEELEVRTLLSGEYDSREAVVNIRAEAGGVDAADFAEKLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFSVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEKTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG+I F+EA I R+ +
Sbjct: 341 VGNPTAVLDGDIDGFLEAGIRWRKQQE 367
>gi|206901574|ref|YP_002251123.1| peptide chain release factor 2 [Dictyoglomus thermophilum H-6-12]
gi|206740677|gb|ACI19735.1| peptide chain release factor 2 [Dictyoglomus thermophilum H-6-12]
Length = 330
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 149/256 (58%), Gaps = 7/256 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
L ++E+ +L+ P+D A +++ AG+ G + W E LL MY+RWA+++GY+ +++D
Sbjct: 69 LKEFEIEMILQDPHDEANAILSLHAGTGGTDAQDWTEILLRMYIRWAERKGYQVKILDIS 128
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KSAT+ E + A+GYL GE G H L+ + + + A V+V+P E+
Sbjct: 129 PGEEAGIKSATLLIEGDKAYGYLKGEKGVHRLVRISPFDANHRRHTSFALVEVIPELPES 188
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ ++I EDL F + G+ + + A I HIPTGI VQ ER+ ANK AL
Sbjct: 189 T--IEIRPEDLKIETFRAGGAGGQHVNKVESAVRITHIPTGIVVQCQNERSQHANKEMAL 246
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LKA+L + ++ ++ +K E W + R YV HPY LV+D +TG+++ + +
Sbjct: 247 RVLKARLEELEEKKRREKIASLKGEVQEISWGNQIRSYVFHPYTLVKDHRTGLEIGNVQA 306
Query: 307 VLDGNIKPFIEAHINS 322
V+DG I PFIEA++ S
Sbjct: 307 VIDGEIDPFIEAYLYS 322
>gi|315226283|ref|ZP_07868071.1| peptide chain release factor RF2 [Parascardovia denticolens DSM
10105 = JCM 12538]
gi|315120415|gb|EFT83547.1| peptide chain release factor RF2 [Parascardovia denticolens DSM
10105 = JCM 12538]
Length = 396
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 169/327 (51%), Gaps = 16/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + V L+ S L + + ++ + L ME D + A+
Sbjct: 63 GLWDDPETAQRVTSNLSASQAEYKRLTEAGQRLDDIDTLYSLG-MEEEDEDSKQEAWSEL 121
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK L E+ LL G D A VTI++G+ G+ WA+ L+ MY+RWA++ Y+
Sbjct: 122 KKLSKDLSDIEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYIRWAERHQYKV 181
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+V+D + G+KSAT + YA+G LS E G H L+ F N S + + A V+V
Sbjct: 182 QVIDTSYAEEAGIKSATFRVDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVEV 240
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E + + + D D+ + S G+ + A + H+PTGI V ER+
Sbjct: 241 IPL-VEPTDHIDVPDSDVRVDTYMSHGPGGQGVNTTYSAVRLTHLPTGIVVTMQDERSQI 299
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ A+ L+++LLV+ E+ + K+E +I W + R YV HPY++V+D++
Sbjct: 300 QNRAAAMAVLQSRLLVLKQEEEAAK----KKELAGDIKASWGDQMRSYVLHPYQMVKDLR 355
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG + D +V DG+I FI+A I R
Sbjct: 356 TGYETSDPQAVFDGDIDGFIDAGIRWR 382
>gi|357413121|ref|YP_004924857.1| peptide chain release factor 2 [Streptomyces flavogriseus ATCC
33331]
gi|320010490|gb|ADW05340.1| peptide chain release factor 2 [Streptomyces flavogriseus ATCC
33331]
Length = 368
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLEVLFELAEDEG-DADALAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVRKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAERHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T E YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVEVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ ++
Sbjct: 341 MGNPEAVFNGEIDGFVEAGIRWRKQNE 367
>gi|225027512|ref|ZP_03716704.1| hypothetical protein EUBHAL_01768 [Eubacterium hallii DSM 3353]
gi|224955151|gb|EEG36360.1| peptide chain release factor 2 [Eubacterium hallii DSM 3353]
Length = 371
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 164/333 (49%), Gaps = 25/333 (7%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R W+DP K+ EV K+ + V+A L ++ + +L E
Sbjct: 41 MREEGFWNDPDKAQEVTRKVKNLKDTVSAYHALELTLDDVSTMIELGNEEN--------- 91
Query: 62 YRASL--DVSKLLDQYEM-------SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
AS+ D+ +LL ++E+ LL G D A VT+ AG+ G WA L
Sbjct: 92 -DASVIPDIEELLGEFEIEFDNLKIQTLLSGEYDKNNAIVTLHAGAGGTESCDWAGMLYR 150
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY +WAD G++ V+D G+KS T E E A+GYL E G H L+ N +
Sbjct: 151 MYSKWADSHGFKTEVLDYLDGDEAGIKSITFEVNGENAYGYLKSERGVHRLVRISPFNAA 210
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+ + A DV+P +E ++I+DED+ + + G+ + A I HIPTG
Sbjct: 211 GKRQTSFASCDVMP-DIEEDLSVEIADEDIRIDTYRASGAGGQHINKTDSAIRITHIPTG 269
Query: 228 IAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSH 287
+ VQ ER+ NK KA+ LKAKL +I ++ +S I+ E N W + R YV
Sbjct: 270 VVVQCQNERSQHKNKDKAMQMLKAKLYLIKEQENREKLSDIRGEVSDNGWGNQIRSYVMQ 329
Query: 288 PYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
PY +V+D +TG + + SV+DGN+ F+ A++
Sbjct: 330 PYTMVKDHRTGEETGNVQSVMDGNLDAFMNAYL 362
>gi|385142948|emb|CCH23987.1| peptide chain release factor 2 [Corynebacterium glutamicum K051]
Length = 368
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDTREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + I D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLERKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNFE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 338 VNDPQKVLDGDIDGLLEAGIRWR 360
>gi|417971945|ref|ZP_12612861.1| peptide chain release factor 2 [Corynebacterium glutamicum S9114]
gi|344043699|gb|EGV39387.1| peptide chain release factor 2 [Corynebacterium glutamicum S9114]
Length = 368
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + I D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLERKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNFE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 338 VNDPQKVLDGDINGLLEAGIRWR 360
>gi|354558919|ref|ZP_08978172.1| Peptide chain release factor 2 [Desulfitobacterium metallireducens
DSM 15288]
gi|353545243|gb|EHC14695.1| Peptide chain release factor 2 [Desulfitobacterium metallireducens
DSM 15288]
Length = 332
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 159/326 (48%), Gaps = 6/326 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP + +V+ +L V +DL K E+ ++ +LA E D L
Sbjct: 7 DFWDDPDSAQKVMQELGFQQAKVKMYEDLHAKFEDLTVLYELATEEE-DNSLETEVETEV 65
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + ++ E+ LL P D +T+ AG+ G + W L MYVRW ++ GY+
Sbjct: 66 KELQGIFEKLELEILLSNPYDQNNTILTLHAGAGGTEAQDWVSMLYRMYVRWGERRGYKV 125
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSATI E A+GY E G H L+ + + + A VDV+
Sbjct: 126 ETMDLLPGDEAGIKSATISIAGENAYGYAKSEKGVHRLVRISPFDAAGRRHTSFASVDVI 185
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E ++ I+ ++L + + G+ + A I H+PTGI V ER+
Sbjct: 186 PEVEEDDSEIMINPDELKVDTYRASGAGGQHINKTSSAVRITHLPTGIVVACQSERSQIQ 245
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ + LKAKLL + +Q +S I+ E W + R YV HPY +V+D +T ++
Sbjct: 246 NRAYVMRVLKAKLLELKRQQQADEISEIRGEQQEIAWGSQIRSYVFHPYNMVKDHRTNVE 305
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSS 326
+ +V+DG I FI A++ S +++
Sbjct: 306 TANVAAVMDGEIDEFIAAYLQSTKTA 331
>gi|415883540|ref|ZP_11545569.1| Protein chain release factor B [Bacillus methanolicus MGA3]
gi|387591335|gb|EIJ83652.1| Protein chain release factor B [Bacillus methanolicus MGA3]
Length = 327
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 169/325 (52%), Gaps = 11/325 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A+ LK +VN D+ E +L +L + E D L + +
Sbjct: 5 DFWDDQQKA-QAIINEANGLKDLVNEFNDMNETLENLELTYELVKEEN-DAELQEELEKE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++K ++Q+E+ LL P D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 63 LKDLTKRVNQFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKKGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGIKSVTLAIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F +++I EDL + S G+ + A I HIPTGI V ER+
Sbjct: 182 VMPEF-NDEIEIEIRPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+N LKAKL E+ ++ I+ E W + R YV HPY LV+D +T
Sbjct: 241 IKNRERAMNMLKAKLYQKKIEEQEKELAEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
+++ + +V+DG I PFI A++ SR
Sbjct: 301 VEIGNVQAVMDGEIDPFINAYLRSR 325
>gi|415724069|ref|ZP_11469756.1| peptide chain release factor 2 [Gardnerella vaginalis 00703C2mash]
gi|388063003|gb|EIK85601.1| peptide chain release factor 2 [Gardnerella vaginalis 00703C2mash]
Length = 373
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 168/326 (51%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVEQSIEDTKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GAIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|19552028|ref|NP_600030.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
13032]
gi|62389691|ref|YP_225093.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
13032]
gi|145294961|ref|YP_001137782.1| peptide chain release factor 2 [Corynebacterium glutamicum R]
gi|418246625|ref|ZP_12873019.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
14067]
gi|24638152|sp|Q8NS78.1|RF2_CORGL RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|166223627|sp|A4QCD3.1|RF2_CORGB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|21323567|dbj|BAB98194.1| Protein chain release factor B [Corynebacterium glutamicum ATCC
13032]
gi|41325026|emb|CAF19507.1| PEPTIDE CHAIN RELEASE FACTOR 2 [Corynebacterium glutamicum ATCC
13032]
gi|140844881|dbj|BAF53880.1| hypothetical protein [Corynebacterium glutamicum R]
gi|354509240|gb|EHE82175.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
14067]
Length = 368
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + I D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLERKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNFE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 338 VNDPQKVLDGDIDGLLEAGIRWR 360
>gi|333921383|ref|YP_004494964.1| peptide chain release factor 2 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483604|gb|AEF42164.1| Peptide chain release factor 2 [Amycolicicoccus subflavus DQS3-9A1]
Length = 370
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 176/333 (52%), Gaps = 21/333 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME--------AIDYGL 57
+LWDD + +V +L+ + + L++LR + ++ ++ +LAE E +
Sbjct: 43 DLWDDQEHAQQVTSQLSYAQGELRRLEELRQRVDDLPVMYELAEAEEGVAAQEATTEADD 102
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
+ A RA +++ E+ LL G D A VTI++G+ GI WAE L+ MY+RW
Sbjct: 103 ERTALRAEIEL------LEVRTLLSGEYDQREALVTIRSGAGGIDAADWAEMLMRMYIRW 156
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+K Y V D + G+KSAT + Y +G LS E G H L+ + +
Sbjct: 157 AEKHKYSVEVYDTSYAEEAGIKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQARRQT 216
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + +L +F S G+ + A I H+PTGI V
Sbjct: 217 SFAEVEVLPV-VETTDSIDIPETELRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSC 275
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK A+ L+AKLL + + + +K E+ + W + R YV HPY++V
Sbjct: 276 QNEKSQLQNKAAAMRVLQAKLLERKRHEERAEMDALKSESGSS-WGNQMRSYVLHPYQMV 334
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+D++T +++ + ++VLDG I FIEA I R+S
Sbjct: 335 KDLRTEVEVNNPSTVLDGEIDRFIEAGIRWRKS 367
>gi|415728929|ref|ZP_11472267.1| peptide chain release factor 2 [Gardnerella vaginalis 6119V5]
gi|388064929|gb|EIK87444.1| peptide chain release factor 2 [Gardnerella vaginalis 6119V5]
Length = 380
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQDEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GSIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|295697362|ref|YP_003590600.1| hypothetical protein [Kyrpidia tusciae DSM 2912]
gi|295412964|gb|ADG07456.1| hypothetical protein Btus_2812 [Kyrpidia tusciae DSM 2912]
Length = 382
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 7/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + +V+ ++ VV ++ LR + E+ +++ +L E D +
Sbjct: 46 DFWDDQEGAQKVIAEVNRLKDVVERVEGLRSRVEDLEVLWELGHEEG-DETVLGEIEAGI 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V L Q+E+ +L GP D A V + G+ G + W LL MY RWA+ GY+
Sbjct: 105 TQVHSQLGQFELELMLSGPYDRNNAIVELHPGAGGTESQDWTAMLLRMYTRWAESRGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + GVKS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 165 ETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAERGVHRLVRISPFDASGRRHTSFASVDVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ S D+ I EDL + S G+ + A I HIPTGI V ER+
Sbjct: 225 P-ELDESVDVDIRPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQSERSQIK 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L A+L + ++ ++ E W + R YV HPY +V+D +TG++
Sbjct: 284 NRATAMKILAARLYERRRREQEEQIAALRGEQKEIAWGSQIRSYVFHPYSMVKDHRTGVE 343
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ +V+DG+I FI+A + R ++ D
Sbjct: 344 TGNVQAVMDGDIDAFIDAWLRQRAAAQLD 372
>gi|304317582|ref|YP_003852727.1| hypothetical protein Tthe_2166 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779084|gb|ADL69643.1| hypothetical protein Tthe_2166 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 365
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D KS E+ KL D ++++ + + E+ + +L +E D L + +
Sbjct: 43 DFWNDLQKSQELSKKLKDLKELISEYESIEKLCEDLNALIELG-IEEGDESLSQEVHEEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK ++ ++ LL GP D A ++I AG+ G + W E LL MY+RWA + Y
Sbjct: 102 KSLSKKINDMKIKTLLSGPYDRNNAILSIHAGAGGTEAQDWTEMLLRMYMRWASSKNYEV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD + GVKS TI + +A+GYL GE G H L+ + + + A V+V+
Sbjct: 162 ETVDYLPGDDAGVKSVTIMVKGAFAYGYLKGEAGVHRLVRISPFDAAGRRHTSFALVEVL 221
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
P E D++ I EDL + S G+ + + A I HIPTGI VQ ER+
Sbjct: 222 P---EIDDDIKVDIRPEDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGIIVQCQSERSQ 278
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ LKAKL+ ++ ++ + +K E W + R YV PY LV+D +T
Sbjct: 279 MQNRETAMKMLKAKLMDLMIKEQKEKIEDLKGEHKEAGWGNQIRSYVFQPYTLVKDHRTN 338
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + N+V+DG+I FI A++ + S
Sbjct: 339 FEVGNVNAVMDGDIDEFINAYLKQKVS 365
>gi|157412537|ref|YP_001483403.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9215]
gi|157387112|gb|ABV49817.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9215]
Length = 354
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 147/261 (56%), Gaps = 6/261 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMSLVINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ L I ++DL + S G+ + + A I H+P+GI+V+ ER+ NK KA+
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCTQERSQLQNKEKAM 269
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LK+KLLVI EQ + V+ IK + + W + R YV HPY++V+D++T + D +S
Sbjct: 270 LLLKSKLLVIAKEQRAAEVADIKGDIVEAAWGNQIRNYVFHPYQMVKDLRTMQETNDLDS 329
Query: 307 VLDGNIKPFIEAHINSRRSSD 327
VLDG ++PFI + SS+
Sbjct: 330 VLDGGLEPFIHELLRMNISSN 350
>gi|333980674|ref|YP_004518619.1| peptide chain release factor 2 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333824155|gb|AEG16818.1| peptide chain release factor 2 [Desulfotomaculum kuznetsovii DSM
6115]
Length = 366
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 167/327 (51%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+DP ++ +V KLA V ++L E+ L+ L E + R
Sbjct: 43 GFWNDPEQAQQVTQKLAALKDRVAQYRELARVQED--LVVLLDLGEEEEDETVAREVAGE 100
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L +++ +++ E+ LL GP D A V++ AG+ G + W E LL MY RWA+++GYR
Sbjct: 101 LKKLARRVEKMELEVLLSGPYDRGNAIVSLHAGAGGTEAQDWVEMLLRMYTRWAEEKGYR 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
++D G+KS T A+GYL E G H L+ + + + A VDV
Sbjct: 161 VTIMDMLPGDEAGIKSVTFSVAGPNAYGYLRAEKGVHRLVRISPFDAAGRRHTSFASVDV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P +E L+I EDL F S G+ + + A I H+PTGI VQ ER+
Sbjct: 221 LP-EVEEDVQLEIRPEDLKIDTFRSSGAGGQHVNKTESAVRITHLPTGIVVQCQSERSQI 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
AN+ A+ L+AKLL + ++ + ++ ++ E W + R YV HPY LV+D +TG+
Sbjct: 280 ANRNAAMKLLRAKLLDLEMKKKEAELAALRGEQGEIAWGNQIRSYVFHPYSLVKDHRTGV 339
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSS 326
++ + +V+DG I FI A++ + S
Sbjct: 340 EVGNVQAVMDGEIDEFISAYLRQKAKS 366
>gi|171741050|ref|ZP_02916857.1| hypothetical protein BIFDEN_00116 [Bifidobacterium dentium ATCC
27678]
gi|283455565|ref|YP_003360129.1| peptide chain release factor 2 [Bifidobacterium dentium Bd1]
gi|171276664|gb|EDT44325.1| peptide chain release factor 2 [Bifidobacterium dentium ATCC 27678]
gi|283102199|gb|ADB09305.1| prfB Bacterial Peptide Chain Release Factor 2 (RF-2)
[Bifidobacterium dentium Bd1]
Length = 380
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 165/326 (50%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYR 63
LWDDP + ++ KL+ V + LK L ++ + L E+ E D + A
Sbjct: 48 GLWDDPENAQKITSKLS---AVQSQLKRLSSASQRIDDVETLVELGREEEDADTLEEAKN 104
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY
Sbjct: 105 EIEGIRHDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+
Sbjct: 165 KAKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVE 224
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
VVPL T PD +I + S P G+ + A I HIPTGI V ER+
Sbjct: 225 VVPLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVVTMQDERS 282
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++T
Sbjct: 283 QIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRT 341
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 342 GYETSQTQAVFDGDIDAFIEAGIRWR 367
>gi|260904322|ref|ZP_05912644.1| peptide chain release factor 2 [Brevibacterium linens BL2]
Length = 372
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 175/330 (53%), Gaps = 20/330 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP + ++ L+ + L+ + ++A+LI +++E D G A
Sbjct: 43 SFWDDPDSAQKISATLSHKQGTLEKLEKFGERIDDAELIIEMSE----DEGDEDSKVEAE 98
Query: 66 LDVSKLLDQY---EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL DQ E+S LL D A VT+++G+ G WA+ L+ MYVRWA+ G
Sbjct: 99 RDLKKLHDQLAELEISTLLNHEYDERSAVVTVRSGAGGDDATDWAQMLIRMYVRWAENRG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y + +D + G+KSATI+ YA+G LS E G H L+ + + + A V
Sbjct: 159 YNVQQLDTSYAEGAGIKSATIQVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+VVPL +E++ ++I + DL ++ S G+ + A I H PTG+ V E++
Sbjct: 219 EVVPL-IESTDHVEIDENDLRIDVYRSSGPGGQSVNTTDSAVRITHAPTGVVVSMQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ A+ L+++LL + ++ + K+E +I W + R YV+HPY++V+D
Sbjct: 278 QIQNREAAMRVLQSRLLDLKRKEEAAE----KKELAGDIKASWGDQMRSYVTHPYQMVKD 333
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRR 324
++TG ++ + ++V DG++ IEA I R+
Sbjct: 334 LRTGYEVNNPSNVFDGDLDGLIEAGIRWRK 363
>gi|427391491|ref|ZP_18885897.1| peptide chain release factor 2 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732134|gb|EKU94946.1| peptide chain release factor 2 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 394
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 175/333 (52%), Gaps = 12/333 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRAY-- 62
NLWDD ++ EV +L+ + ++ L L + ++ + + ++A+ EA D K Y
Sbjct: 60 NLWDDQDRAQEVTSQLSHAQAELDKLTGLEERLDDLEALLEIADEEAETDASSAKDLYGE 119
Query: 63 --RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ V K LD+ ++ LL G D A VTI++G+ G+ + E L MY+RW +
Sbjct: 120 LREETTAVEKTLDELQIRTLLSGKYDEREAVVTIRSGAGGVDAADFTEMLQRMYLRWGAR 179
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY +V++ + G+KS T E YA+G L+GE G H L+ + + + A
Sbjct: 180 RGYPTKVLNTSYAEEAGIKSTTFEVSAPYAYGTLAGEAGTHRLVRISPFDNQARRQTSFA 239
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+PL +E + + I + D+ +F S G+ + A I H+PTGI V E
Sbjct: 240 AVEVIPL-IEQTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSMQDE 298
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ N+ A+ L+++LLV+ E+ ++ + + W + R YV PY++V+D+
Sbjct: 299 KSQIQNRAAAMRVLQSRLLVLKQEEEEREKKELRGDVKAS-WGDQMRSYVLQPYQMVKDL 357
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+TG + + ++V DG+I FI+A I R + +T
Sbjct: 358 RTGYETGNTDAVFDGDIDGFIDAEIRWRATGET 390
>gi|260892371|ref|YP_003238468.1| PE-PGRS family protein [Ammonifex degensii KC4]
gi|260864512|gb|ACX51618.1| PE-PGRS family protein [Ammonifex degensii KC4]
Length = 377
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 164/324 (50%), Gaps = 13/324 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D ++ V ++A + + LR EE ++ +LA E L + A
Sbjct: 43 DFWRDLARAQAVTQEVASLRQCLGRFYRLREGHEELSVLLELAAEEGDAQVLAELAQ--- 99
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
DV KL ++ E+ LL GP D A V++ AG+ G + W LL MY RWA+ G
Sbjct: 100 -DVKKLAGEIEDLEVELLLSGPYDASNAIVSLHAGAGGTDAQDWVAMLLRMYARWAEAHG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
YR R +D + G+KS T E A+GYL E G H LI + S + A V
Sbjct: 159 YRIRTLDLLTGEEAGIKSVTFEVIGPRAYGYLKAERGVHRLIRISPFDASGRRHTSFASV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
DV+P ++ +++I+ E+L F + G+ + + A I H+PTGI V ER+
Sbjct: 219 DVLP-AVKDDTEIKIAPEELRIDTFRASGAGGQHVNKTETAVRITHLPTGITVTCQSERS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
ANK A+ L+A+LL + ++ ++ ++ E W + R YV HPY LV+D +T
Sbjct: 278 QSANKAAAMEILRARLLDLKIKEREKELAALRGEVKEIAWGNQIRTYVLHPYTLVKDHRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHIN 321
G++ D +VLDG+I FI A++
Sbjct: 338 GVERRDIQAVLDGDIDDFIRAYLK 361
>gi|23465750|ref|NP_696353.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705]
gi|189439805|ref|YP_001954886.1| peptide chain release factor 2 [Bifidobacterium longum DJO10A]
gi|239622364|ref|ZP_04665395.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296453666|ref|YP_003660809.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum JDM301]
gi|312133211|ref|YP_004000550.1| prfb [Bifidobacterium longum subsp. longum BBMN68]
gi|322690619|ref|YP_004220189.1| peptide chain release factor [Bifidobacterium longum subsp. longum
JCM 1217]
gi|384202009|ref|YP_005587756.1| peptide chain release factor [Bifidobacterium longum subsp. longum
KACC 91563]
gi|419848678|ref|ZP_14371771.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 1-6B]
gi|419851231|ref|ZP_14374183.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 35B]
gi|419852838|ref|ZP_14375691.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 2-2B]
gi|419854346|ref|ZP_14377134.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 44B]
gi|23326435|gb|AAN24989.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705]
gi|189428240|gb|ACD98388.1| Protein chain release factor B [Bifidobacterium longum DJO10A]
gi|239514361|gb|EEQ54228.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291517272|emb|CBK70888.1| bacterial peptide chain release factor 2 (bRF-2) [Bifidobacterium
longum subsp. longum F8]
gi|296183097|gb|ADG99978.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum JDM301]
gi|311772412|gb|ADQ01900.1| PrfB [Bifidobacterium longum subsp. longum BBMN68]
gi|320455475|dbj|BAJ66097.1| peptide chain release factor [Bifidobacterium longum subsp. longum
JCM 1217]
gi|338755016|gb|AEI98005.1| peptide chain release factor [Bifidobacterium longum subsp. longum
KACC 91563]
gi|386406926|gb|EIJ21919.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 35B]
gi|386407211|gb|EIJ22191.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 1-6B]
gi|386409533|gb|EIJ24375.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 2-2B]
gi|386417686|gb|EIJ32158.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 44B]
Length = 374
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 173/333 (51%), Gaps = 12/333 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 44 GLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGHEEG-DQDSLDEAQSEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++
Sbjct: 103 GEIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PTGI V ER+
Sbjct: 223 PL-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 282 NRASAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI----NSRRSSDTD 329
+V DG+I FIEA I RR+++T+
Sbjct: 341 TSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373
>gi|213692886|ref|YP_002323472.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|384200108|ref|YP_005585851.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213524347|gb|ACJ53094.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320459060|dbj|BAJ69681.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 374
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 173/333 (51%), Gaps = 12/333 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 44 GLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGHEEG-DQDSLDEAQSEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++
Sbjct: 103 GEIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PTGI V ER+
Sbjct: 223 PL-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 282 NRASAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI----NSRRSSDTD 329
+V DG+I FIEA I RR+++T+
Sbjct: 341 TSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373
>gi|322688633|ref|YP_004208367.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis 157F]
gi|320459969|dbj|BAJ70589.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis 157F]
Length = 374
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 173/333 (51%), Gaps = 12/333 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 44 GLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGREEG-DQDSLDEAQSEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++
Sbjct: 103 GEIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PTGI V ER+
Sbjct: 223 PL-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 282 NRASAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI----NSRRSSDTD 329
+V DG+I FIEA I RR+++T+
Sbjct: 341 TSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373
>gi|217967791|ref|YP_002353297.1| peptide chain release factor 2 [Dictyoglomus turgidum DSM 6724]
gi|217336890|gb|ACK42683.1| peptide chain release factor 2 [Dictyoglomus turgidum DSM 6724]
Length = 330
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 10/318 (3%)
Query: 8 WDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLD 67
WD+ K +L K K + + + L+ EE L E E +Y ++
Sbjct: 8 WDNSEKVKPILTKFNKLQKEIESWEKLKTDIEELSEWKDLLE-EGDEYKEEFEKKLKEVE 66
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
S L +E+ +L+ P+D A +++ AG+ G + W E LL MY+RWA+++GY+ ++
Sbjct: 67 KS--LKNFEIEMVLQDPHDEANAVLSLHAGTGGTDAQDWTEILLRMYIRWAERKGYQVKI 124
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+D + G+KSAT+ E + A+GYL GE G H L+ + + + A V+V+P
Sbjct: 125 LDISPGEEAGIKSATLLIEGDKAYGYLKGEKGVHRLVRISPFDANHRRHTSFALVEVIPE 184
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANK 242
E++ ++I EDL F + G+ + + A I HIPTGI VQ ER+ ANK
Sbjct: 185 LPEST--IEIKPEDLKIETFRAGGAGGQHVNKVESAVRITHIPTGIVVQCQNERSQHANK 242
Query: 243 MKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLP 302
AL LKA+L + + ++ +K E W + R YV HPY LV+D +TG+++
Sbjct: 243 EMALRVLKARLEELEERKRREKIASLKGEVQEISWGNQIRSYVFHPYTLVKDHRTGLEIG 302
Query: 303 DFNSVLDGNIKPFIEAHI 320
+ +V+DG I PFIEA++
Sbjct: 303 NVQAVIDGEIDPFIEAYL 320
>gi|306823395|ref|ZP_07456770.1| peptide chain release factor RF2 [Bifidobacterium dentium ATCC
27679]
gi|309802644|ref|ZP_07696748.1| peptide chain release factor 2 [Bifidobacterium dentium JCVIHMP022]
gi|304553102|gb|EFM41014.1| peptide chain release factor RF2 [Bifidobacterium dentium ATCC
27679]
gi|308220708|gb|EFO77016.1| peptide chain release factor 2 [Bifidobacterium dentium JCVIHMP022]
Length = 380
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 165/326 (50%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYR 63
LWDDP + ++ KL+ V + LK L ++ + L E+ E D + A
Sbjct: 48 GLWDDPENAQKITSKLS---AVQSQLKRLASASQRIDDVETLVELGREEEDADTLEEAKN 104
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY
Sbjct: 105 EIEGIRHDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+
Sbjct: 165 KAKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVE 224
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
VVPL T PD +I + S P G+ + A I HIPTGI V ER+
Sbjct: 225 VVPLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVVTMQDERS 282
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++T
Sbjct: 283 QIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRT 341
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 342 GYETSQTQAVFDGDIDAFIEAGIRWR 367
>gi|254526132|ref|ZP_05138184.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9202]
gi|221537556|gb|EEE40009.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9202]
Length = 354
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 6/250 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMTLVINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ L I ++DL + S G+ + + A I H+P+GI+V+ ER+ NK KA+
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCTQERSQLQNKEKAM 269
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LK+KLLVI EQ + V+ IK + + W + R YV HPY++V+D++T + D +S
Sbjct: 270 LLLKSKLLVIAKEQRAAEVADIKGDIVEAAWGNQIRNYVFHPYQMVKDLRTMQETNDLDS 329
Query: 307 VLDGNIKPFI 316
VLDG ++PFI
Sbjct: 330 VLDGGLEPFI 339
>gi|229491026|ref|ZP_04384859.1| peptide chain release factor 2 [Rhodococcus erythropolis SK121]
gi|453069985|ref|ZP_21973238.1| peptide chain release factor 2 [Rhodococcus qingshengii BKS 20-40]
gi|259585230|sp|C0ZXD0.1|RF2_RHOE4 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226184911|dbj|BAH33015.1| peptide chain release factor 2 [Rhodococcus erythropolis PR4]
gi|229322142|gb|EEN87930.1| peptide chain release factor 2 [Rhodococcus erythropolis SK121]
gi|452762530|gb|EME20826.1| peptide chain release factor 2 [Rhodococcus qingshengii BKS 20-40]
Length = 368
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 179/328 (54%), Gaps = 13/328 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ + + + LR + +E ++ +LAE E D A RASL
Sbjct: 44 LWNDQEHAQQVTSQLSHAQAELRRIVALRERLDEMPILYELAEDEGPDAVADADAERASL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A + I++G+ GI WAE L+ MY+RWA+K Y
Sbjct: 104 RDDIAAM----EVKTMLSGEYDERDALINIRSGAGGIDAADWAEMLMRMYIRWAEKHDYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y +G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGLKSATFAIKGPYTYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ ++I++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIEINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K ++ + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLAVKRQEERAEMDALKGDSGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + ++VLDG+I F+EA I R S +
Sbjct: 338 EVNNPSAVLDGDIDGFLEAGIRWRMSEN 365
>gi|345861348|ref|ZP_08813614.1| peptide chain release factor 2 [Desulfosporosinus sp. OT]
gi|344325613|gb|EGW37125.1| peptide chain release factor 2 [Desulfosporosinus sp. OT]
Length = 332
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 162/324 (50%), Gaps = 7/324 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +++ +LA V +L K EE + + LA +E D L +
Sbjct: 10 LWDDPDLAQKIMQELAYHQNKVKTYDELEGKLEETETLWLLA-IEEDDLSLESEIEQEVR 68
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + E+ LL G D A +T+ AG+ G + W + L +Y+RW ++ GY+
Sbjct: 69 SLRGRFEALELEILLSGQYDRNNAILTLHAGAGGTEAQDWVQMLYRLYIRWGERHGYKVE 128
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KSAT+ F E A+GY E G H L+ + S + A VDV+P
Sbjct: 129 TLDFLPGEEAGIKSATLSFSGENAYGYAKSEKGVHRLVRISPFDSSGRRHTSFASVDVIP 188
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
E + ++ I EDL + S G+ + A I H+P+G+ VQ ER+ N
Sbjct: 189 EVTEDN-EITIDTEDLRVDTYRSGGAGGQHVNKTDSAIRITHLPSGVVVQCQSERSQIQN 247
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ L+AKLL + ++ S +S I+ E W + R YV HPY LV+D +T ++
Sbjct: 248 KAAAMRVLQAKLLELKRKEQESEISEIRGEQQEIAWGSQIRSYVFHPYSLVKDHRTNVET 307
Query: 302 PDFNSVLDGNIKPFIEAHINSRRS 325
+ ++V+DG I FI A + +S
Sbjct: 308 GNVSAVMDGEIDAFIAAFLQKTKS 331
>gi|312140591|ref|YP_004007927.1| peptide chain release factor prfb [Rhodococcus equi 103S]
gi|325675787|ref|ZP_08155471.1| peptide chain release factor RF2 [Rhodococcus equi ATCC 33707]
gi|311889930|emb|CBH49247.1| peptide chain release factor PrfB [Rhodococcus equi 103S]
gi|325553758|gb|EGD23436.1| peptide chain release factor RF2 [Rhodococcus equi ATCC 33707]
Length = 367
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 175/326 (53%), Gaps = 9/326 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ + + +++LR + ++ ++ +LAE E + A RA L
Sbjct: 44 LWNDQEHAQQVTSQLSHAQSELRRVEELRSRLDDMAVLYELAEEEGPEAVADAHAERAQL 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ E+ +L G D A V I+AG+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 RTD--IEAMEVKTMLSGEYDQRDALVNIRAGAGGVDAADWAEMLMRMYIRWAEKRGYGVE 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V+P
Sbjct: 162 VYDTSYAEEAGIKSATFAVKAPYSYGTLSIEMGTHRLVRISPFDNQGRRQTSFAEVEVLP 221
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V E++ N
Sbjct: 222 V-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNEKSQLQN 280
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++T ++
Sbjct: 281 KVSAMRVLQAKLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEYEV 339
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
+ ++VLDG I FIEA I R S +
Sbjct: 340 NNPSAVLDGEIDGFIEAGIRWRMSEN 365
>gi|121535512|ref|ZP_01667321.1| peptide chain release factor 2 [Thermosinus carboxydivorans Nor1]
gi|121305931|gb|EAX46864.1| peptide chain release factor 2 [Thermosinus carboxydivorans Nor1]
Length = 332
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 166/320 (51%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ ++ ++ ++ + LR + + + QL M+ D ++
Sbjct: 9 DFWDDPAEAQKIAQEVTALKDSISQYQQLRSRHSDVAALWQLG-MDEGDDSVYDEVAAEL 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K L+Q E++ LL G D A +T+ AG+ G + WA+ LL MY+RWA+K GY+
Sbjct: 68 RALAKDLEQLELTVLLTGEYDANNAILTLHAGAGGTEAQDWAQMLLRMYMRWAEKRGYKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSATI A+GYL E G H L+ + S + A VDV+
Sbjct: 128 ELLDALAGEEAGIKSATITVAGRNAYGYLKAEKGVHRLVRISPFDASGRRHTSFAAVDVM 187
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ + ++ I+ DL F S G+ + + A I H+PTGI VQ ER+
Sbjct: 188 P-EIDDNTEIVINPADLKIDTFRSGGAGGQHVNKTESAVRITHLPTGIVVQCQSERSQIQ 246
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ L+AKL + ++ S + + W + R YV HPY LV+D +T +
Sbjct: 247 NREQAMRLLRAKLFELERQKREQKKSELAGDYQAIEWGSQIRSYVFHPYNLVKDHRTNAE 306
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DG I FIEA++
Sbjct: 307 TGNVQAVMDGEIDLFIEAYL 326
>gi|386866739|ref|YP_006279733.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385700822|gb|AFI62770.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 377
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 165/326 (50%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYR 63
LWDD + +V+ +L+ + LK L A +A L E+ E D A
Sbjct: 44 GLWDDSEHAQKVMSQLS---ACQSQLKHLSSAASRLDDVATLVELGQEENDADTLHEAQT 100
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ K LDQ E+ L+ G D A VTI++G+ G+ +A+ LL MY+RWA++ GY
Sbjct: 101 EIESIQKDLDQMEIETLMDGEYDSRSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGY 160
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+
Sbjct: 161 KAKVMDTSYAEEAGIKSATFQIDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVE 220
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
VVPL T PD +I + S P G+ + A I H+PTGI V ER+
Sbjct: 221 VVPLVEATDHIEVPDSEIRVDTYCASGPG--GQGVNTTYSAVRITHLPTGIVVTMQDERS 278
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++T
Sbjct: 279 QIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FI+A I R
Sbjct: 338 GCETSQTQAVFDGDIDEFIQAGIRWR 363
>gi|415727369|ref|ZP_11471467.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Dmash]
gi|388062266|gb|EIK84884.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Dmash]
Length = 380
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 170/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + ++ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIDDTKTLIELGQEEG-DADSMSEAQDEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GNIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ F + G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVVSMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ + + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMAVLQSRLLVLKH----AEEAAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDGFIEAGIRWR 363
>gi|403717145|ref|ZP_10942509.1| peptide chain release factor 2 [Kineosphaera limosa NBRC 100340]
gi|403209327|dbj|GAB97192.1| peptide chain release factor 2 [Kineosphaera limosa NBRC 100340]
Length = 369
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V LA + ++ + + + E+ +++ ++ E D A R
Sbjct: 43 DLWDDQERAQQVTSNLARANAELDRITGMDARVEDLEVLVEMG-TEENDADTLAEAEREL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K + + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 TSLRKAVGELEVRTLLAGEYDPREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
RV+D + G+KSAT E YA+G+L+ E G H L+ + + + A V+VV
Sbjct: 162 RVMDTSYAEEAGLKSATFEVNVPYAYGHLAVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D +L +F S G+ + A + HIPTGI V E++
Sbjct: 222 PL-IEQTDHIEIPDNELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL L+++LL+ + + + + + W + R YV HPY++V+D++T +
Sbjct: 281 NRAAALRVLQSRLLLAKRAEEAAAKKELAGDVKAS-WGDQMRSYVLHPYQMVKDLRTEHE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + + V DG+I FIE+ I + S+D
Sbjct: 340 VGNTSGVFDGDIDAFIESGIRWKLSAD 366
>gi|407982835|ref|ZP_11163500.1| peptide chain release factor 2 [Mycobacterium hassiacum DSM 44199]
gi|407375566|gb|EKF24517.1| peptide chain release factor 2 [Mycobacterium hassiacum DSM 44199]
Length = 368
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 179/333 (53%), Gaps = 16/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ ++ +L+ + + ++DLR + ++ ++ +LAE E A
Sbjct: 43 HLWDDQDRAQKITSELSRTQGELRRVEDLRRRLDDLPVLYELAEEE----NSADARDEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ +L ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K G
Sbjct: 99 AELKRLREDIEAMEVRTLLSGEYDQREALVTIRSGAGGVDAADWAEMLMRMYIRWAEKHG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V+D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEVLDTSYAEEAGIKSATFVVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +E + + I + ++ ++ S G+ + A I H+PTGI V E+
Sbjct: 218 VEVLPV-VEQTDHIDIPESEIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGIVVTCQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++
Sbjct: 277 SQLQNKLSAMRVLQAKLLERKRQEERAELDALKSDGSAS-WGNQMRSYVLHPYQMVKDLR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
T ++ + +VLDG+I FIEA I R D D
Sbjct: 336 TEYEVGNPAAVLDGDIDGFIEAGIRWRNRKDDD 368
>gi|227546362|ref|ZP_03976411.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|317482557|ref|ZP_07941572.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA]
gi|227213343|gb|EEI81215.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|316915979|gb|EFV37386.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA]
Length = 374
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 173/333 (51%), Gaps = 12/333 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 44 GLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGHEEG-DQDSLDEAQGEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++
Sbjct: 103 GEIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PTGI V ER+
Sbjct: 223 PL-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 282 NRASAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI----NSRRSSDTD 329
+V DG+I FIEA I RR+++T+
Sbjct: 341 TSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373
>gi|123967735|ref|YP_001008593.1| peptide chain release factor 2 [Prochlorococcus marinus str.
AS9601]
gi|123197845|gb|ABM69486.1| peptide chain release factor RF-2 [Prochlorococcus marinus str.
AS9601]
Length = 354
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 146/261 (55%), Gaps = 6/261 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMSLVINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E E +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIEGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ L I ++DL + S G+ + + A I H+P+GI+V+ ER+ NK KA+
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCTQERSQLQNKEKAM 269
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LK+KLLVI EQ + V+ IK + + W + R YV HPY++V+D++T + + +S
Sbjct: 270 LLLKSKLLVIAKEQRAAEVADIKGDIVEAAWGNQIRNYVFHPYQMVKDLRTMQETNELDS 329
Query: 307 VLDGNIKPFIEAHINSRRSSD 327
VLDG + PFI + SS+
Sbjct: 330 VLDGGLDPFIHELLRMNISSN 350
>gi|433456579|ref|ZP_20414617.1| peptide chain release factor 2 [Arthrobacter crystallopoietes
BAB-32]
gi|432196076|gb|ELK52562.1| peptide chain release factor 2 [Arthrobacter crystallopoietes
BAB-32]
Length = 371
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 173/326 (53%), Gaps = 8/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ + L+ L + ++ +++ +L + +A D A
Sbjct: 44 DLWDDPAAAQKITSKLSHRQSELERLEKLASRIDDLEVLVELGK-DAGDEDSLTEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI++G+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 QALKKSLSDLEVVTLLSGEYDEREAVVTIRSGAGGVDAADFAEMLMRMYLRWAERHGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 SVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ +F S G+ + A + H+PTGI V E++
Sbjct: 223 PL-IEQTDSIDIPDNDIKVDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + + W + R YV +PY++V+D++T +
Sbjct: 282 NRAAAMRVLQSRLLLLKKEQEDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSS 326
+ + +VLDG I FI+A I R +S
Sbjct: 341 VGNTGAVLDGEIDDFIDAGIRWRANS 366
>gi|78778568|ref|YP_396680.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9312]
gi|78712067|gb|ABB49244.1| bacterial peptide chain release factor 2 (bRF-2) [Prochlorococcus
marinus str. MIT 9312]
Length = 354
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+IKAG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSIKAGAGGTDAQDWVEILLRMYSRWADNNQMSLIINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQYEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ L I ++DL + S G+ + + A I H+P+GI+V+ ER+ NK KA+
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCTQERSQLQNKEKAM 269
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LK+KLLVI EQ + ++ IK + + W + R YV HPY++V+D++T + + +S
Sbjct: 270 LLLKSKLLVIAKEQRAAEIADIKGDIVEAAWGNQIRNYVFHPYQMVKDLRTMQETNELDS 329
Query: 307 VLDGNIKPFIEAHINSRRSSD 327
VLDG ++PFI + SS+
Sbjct: 330 VLDGGLEPFIHELLRMNISSN 350
>gi|183602511|ref|ZP_02963876.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683556|ref|YP_002469939.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis AD011]
gi|241190585|ref|YP_002967979.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195991|ref|YP_002969546.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|384190832|ref|YP_005576580.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis BB-12]
gi|384191974|ref|YP_005577721.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
gi|384193583|ref|YP_005579329.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195141|ref|YP_005580886.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis V9]
gi|387820453|ref|YP_006300496.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis B420]
gi|387822124|ref|YP_006302073.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|423679110|ref|ZP_17653986.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|183218152|gb|EDT88798.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621206|gb|ACL29363.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis AD011]
gi|240248977|gb|ACS45917.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250545|gb|ACS47484.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178324|gb|ADC85570.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis BB-12]
gi|295793572|gb|ADG33107.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis V9]
gi|340364711|gb|AEK30002.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
gi|345282442|gb|AEN76296.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041612|gb|EHN18103.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|386653154|gb|AFJ16284.1| Peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis B420]
gi|386654732|gb|AFJ17861.1| Peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 377
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 165/326 (50%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYR 63
LWDD + +V+ +L+ + LK L A +A L E+ E D A
Sbjct: 44 GLWDDSEHAQKVMSQLS---ACQSQLKHLSSAASRLDDVATLIELGQEENDADTLHEAQT 100
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ K LDQ E+ L+ G D A VTI++G+ G+ +A+ LL MY+RWA++ GY
Sbjct: 101 EIESIQKDLDQMEIETLMDGEYDSRSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGY 160
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+
Sbjct: 161 KAKVMDTSYAEEAGIKSATFQIDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVE 220
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
VVPL T PD +I + S P G+ + A I H+PTGI V ER+
Sbjct: 221 VVPLVEATDHIEVPDSEIRVDTYCASGPG--GQGVNTTYSAVRITHLPTGIVVTMQDERS 278
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++T
Sbjct: 279 QIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FI+A I R
Sbjct: 338 GCETSQTQAVFDGDIDEFIQAGIRWR 363
>gi|220932479|ref|YP_002509387.1| peptide chain release factor 2 [Halothermothrix orenii H 168]
gi|219993789|gb|ACL70392.1| bacterial peptide chain release factor 2 (bRF-2) [Halothermothrix
orenii H 168]
Length = 331
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 163/327 (49%), Gaps = 18/327 (5%)
Query: 7 LWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
LWDD K+ E+ K + D +K + L +LR EEA+++ +LAE + + L+
Sbjct: 6 LWDDNKKAREITRKSKVVKDRIKSLKKLDELR---EEAEVMIELAEEDETNRELWSEVED 62
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + +D+ E+ L G D A ++I G+ G + WA+ LL MYVRWA+ GY
Sbjct: 63 YINSLEEKIDKMELKFRLNGEYDDCNAILSIHPGAGGTESQDWADMLLRMYVRWAESHGY 122
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D G+K T+ EY++GYL GE G H L+ + S + A V+
Sbjct: 123 KVETLDYLPGDEAGIKRVTLLISGEYSYGYLKGEKGVHRLVRISPFDSSGRRHTSFASVN 182
Query: 182 VVP------LFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+P + DL+I + + G+ + A I HIPTGI VQ E
Sbjct: 183 VIPEIDDDIEVDIDTGDLKIE----TYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNE 238
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ NK A+ LKA+LL + E + ++ E W + R YV HPY L++D
Sbjct: 239 RSQHKNKKMAMMILKARLLELKKEARAEKIEELRGENKEIAWGNQIRSYVFHPYNLIKDH 298
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINS 322
+TG++ + V+DG I FIEA++ +
Sbjct: 299 RTGLEEGNVQKVMDGYIDEFIEAYLKT 325
>gi|403387502|ref|ZP_10929559.1| peptide chain release factor 2 [Clostridium sp. JC122]
Length = 325
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 161/321 (50%), Gaps = 7/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ E+ + + + K L + E+ +++ +L+ E D +K +
Sbjct: 6 FWDDVNKAQEITQQSKNINDKIEKFKSLNLRVEDLEILTELSLEEENDES-YKEIKKELK 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++D ++ LL G D A VT+ G+ G + W E L MY R+ + +G++
Sbjct: 65 ELRVIIDDLKVETLLNGEYDRNNAIVTLHTGAGGNDAQDWTEMLYRMYTRYCESKGFKIE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+K T++ EYA+GYL E G H L+ N + + + A +V+P
Sbjct: 125 VIDYIPADEAGIKGVTLKVTGEYAYGYLKAEKGVHRLVRISPFNANGKRQTSFAGCEVLP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
E S D+ I +DL F + G+ + + A I HIPTGI VQ ER+ N
Sbjct: 185 ELTE-SQDIDIKSDDLKIDTFRASGAGGQHVNKTESAIRITHIPTGIVVQCQSERSQHTN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K AL LK+KL+ + + + + E N W + R YV HPY LV+D +TG +
Sbjct: 244 KDYALKMLKSKLVDLKEQAHKEKIEDLAGEIKDNGWGSQIRSYVFHPYSLVKDHRTGTET 303
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ +SV+DGNI+ FI ++ +
Sbjct: 304 ANVDSVMDGNIEEFITEYLKT 324
>gi|336429368|ref|ZP_08609334.1| peptide chain release factor 2 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336002679|gb|EGN32781.1| peptide chain release factor 2 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 334
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 162/320 (50%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P SN+ + +L + V ++ L + E+ + + ++ E D R+ L
Sbjct: 6 FWDNPEYSNKKMKELKNLKDTVEQIEHLSTQYEDIETLIEMGNEE--DDESMAEEIRSEL 63
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + L+ +S LL G D GA + + AG+ G W L MY RWA+++G+
Sbjct: 64 DSFTDELETLRISTLLTGEYDKNGAILKLNAGAGGTESCDWCSMLYRMYTRWAERKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + +DV+
Sbjct: 124 EVLDYLDGDEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAQGKRQTSFVSLDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I++EDL + S G+ + A I H+PTGI VQ ER+ F
Sbjct: 184 P-DIEEDLDIEINEEDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQFQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ E+ +S I+ E W + R YV PY +V+D +T +
Sbjct: 243 NKDKAMQMLKAKLYMLRQEENAQKLSGIRGEVKEIGWGNQIRSYVFQPYTMVKDHRTNHE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++V+DG + PFI A++
Sbjct: 303 TGNVDAVMDGALDPFINAYL 322
>gi|168210100|ref|ZP_02635725.1| peptide chain release factor 2 [Clostridium perfringens B str. ATCC
3626]
gi|170711768|gb|EDT23950.1| peptide chain release factor 2 [Clostridium perfringens B str. ATCC
3626]
Length = 323
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 163/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY+RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYIRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 243 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 303 SNVNGVMDGDIDNFIIAYLNS 323
>gi|387928642|ref|ZP_10131320.1| peptide chain release factor 2 [Bacillus methanolicus PB1]
gi|387588228|gb|EIJ80550.1| peptide chain release factor 2 [Bacillus methanolicus PB1]
Length = 327
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 165/325 (50%), Gaps = 11/325 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A+ LK +VN DL E L +L + E D L +
Sbjct: 5 DFWDDQQKA-QTIINEANGLKDLVNEFNDLNETLENLDLTYELVKEEN-DAELKEELENE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D +K ++Q+E+ LL P D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 63 LKDFTKRVNQFELQLLLNEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKKGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGDEAGIKSVTLAIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F +++I EDL + S G+ + A I HIPTG+ V ER+
Sbjct: 182 VMPEF-NDEIEIEIRPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVVTCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+N LKAKL E+ ++ I+ E W + R YV HPY LV+D +T
Sbjct: 241 IKNRERAMNMLKAKLYQKKIEEQEKELAEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG+I PFI A++ SR
Sbjct: 301 TEIGNVQAVMDGDIDPFINAYLRSR 325
>gi|108804456|ref|YP_644393.1| peptide chain release factor 2 [Rubrobacter xylanophilus DSM 9941]
gi|108765699|gb|ABG04581.1| bacterial peptide chain release factor 2 (bRF-2) [Rubrobacter
xylanophilus DSM 9941]
Length = 366
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 168/323 (52%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDDP ++ V + + + + +++LR + E++ + +LAE D L + R
Sbjct: 42 GFWDDPDRAKGVAAEFSRTEDRLKLMEELRGRLEDSSELLELAEG---DRELLEEVEREL 98
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++ E+++L G D A +TI +G+ G+ + WAE L MY RWA++ G+
Sbjct: 99 EGIERRIEEQEVARLFTGEYDEGDAILTINSGAGGVDSQDWAEMLARMYRRWAERRGFGL 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V++ + G+KSAT YAFG LS E G H L+ + S + A V V
Sbjct: 159 EVIEYTEGEEAGIKSATFSVSGPYAFGLLSAERGVHRLVRISPFDASSRRHTSFASVAVA 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ + +++I ++DL + + G+ + A I H+PTGI VQ ER+
Sbjct: 219 PA-IDDAVEVEIDEKDLKVDTYRASGAGGQHVNKTDSAVRITHLPTGIVVQCQNERSQHQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL LKA+L + E+ ++ E W + R YV HPY++V+D++TG +
Sbjct: 278 NRETALRVLKARLFELEREKREQEIAAQSGEKAEIGWGSQIRSYVLHPYRMVKDLRTGEE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
D + VLDG++ FI A++ R
Sbjct: 338 TGDVDRVLDGDLDRFIYAYLKRR 360
>gi|27262208|gb|AAN87385.1| bacterial peptide chain release factor 2 [Heliobacillus mobilis]
gi|111074980|gb|ABH04839.1| bacterial peptide chain release factor 2 [Heliobacillus mobilis]
Length = 341
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 7/325 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + W+D ++ + + +L V + DL K E+ ++ +L E D + +
Sbjct: 14 MITDPTFWEDQEQAQKTMQELTGLKDKVKSFFDLYQKWEDLGVLRELGAEEE-DPDILQE 72
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LD++ + LL GP D A VT+ AG+ G W E L+ MY+RW +K
Sbjct: 73 IEEGIQTIQSELDRWHLQLLLNGPYDRNNALVTLHAGAGGTEAMDWNEMLMRMYIRWGEK 132
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+GY+ ++D G+KSAT+ F E A+GYL GE G H L+ + S + A
Sbjct: 133 KGYKVDILDSLAGDEAGMKSATLSFSGENAYGYLKGEMGVHRLVRISPFDASGRRHTSFA 192
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P + D+QI+ EDL F + G+ + + A I HIPTGI V E
Sbjct: 193 SVEVLPE-VSDDIDIQINSEDLKVDTFRASGAGGQHVNKTESAVRITHIPTGIVVACQSE 251
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ L+AKL ++ V+ +K + + + R YV HPY LV+D
Sbjct: 252 RSQIQNRATAMRMLQAKLFERQRQEQADEVNRLKGDQQDIAFGSQIRSYVFHPYNLVKDH 311
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T ++ +V+DG I F+ A++
Sbjct: 312 RTNCEVGAVYNVMDGEIDDFVSAYM 336
>gi|357389817|ref|YP_004904657.1| putative peptide chain release factor 2 [Kitasatospora setae
KM-6054]
gi|311896293|dbj|BAJ28701.1| putative peptide chain release factor 2 [Kitasatospora setae
KM-6054]
Length = 351
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 173/328 (52%), Gaps = 9/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V +L+ + ++ LR + E+ ++ +LAE E D A
Sbjct: 28 TLWDDVANAQKVTSRLSFLQGELRKVETLRGRVEDLGVLFELAEAED-DADTRTEAEAEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K +++ E+ LL G D A V I+A + G+ +AEQL+ MY+RWA++ GY
Sbjct: 87 VSVQKAVEELEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEQLMRMYLRWAERHGYPT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 EVYDTSYAEEAGIKSATFTVKSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +ETS + I + DL ++ + G+ + A I H+PTGI V ER+
Sbjct: 207 PV-VETSDHVDIDEGDLRIDVYRASGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 265
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + W + R YV HPY++V+D++T +
Sbjct: 266 NKASAMNVLQAKLLERRRQEERAAMDALKDGG--SSWGNQMRSYVLHPYQMVKDLRTEHE 323
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ + VLDG+I FIEA I R+ ++
Sbjct: 324 VGNPQGVLDGDIDGFIEAGIRWRKQRES 351
>gi|297194069|ref|ZP_06911467.1| peptide chain release factor 2 [Streptomyces pristinaespiralis ATCC
25486]
gi|297152097|gb|EDY64812.2| peptide chain release factor 2 [Streptomyces pristinaespiralis ATCC
25486]
Length = 340
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 16 SLWDDPEAAQKITSKLSHLQAEVRKTEALRGRIDDLEILFELAEAED-DPDARAEAEAEL 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ Y
Sbjct: 75 ESVRKALDEMEVRTLLSGEYDEREALVNIRAEAGGVDAADFAEQLQRMYLRWAERHNYGT 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 135 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 194
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ + G+ + A + HIPTGI V ER+
Sbjct: 195 PV-VEKTDHIEIDESELRVDVYRASGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 253
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 254 NKASAMNVLQAKLLERRRQEEQARMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTDFE 312
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + SVLDG I F+EA I R+ D
Sbjct: 313 VGNPQSVLDGEIDGFLEAGIRWRKQQD 339
>gi|303280341|ref|XP_003059463.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459299|gb|EEH56595.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 289
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 144/266 (54%), Gaps = 15/266 (5%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
L+ +E +LL G D GA+V I AG+ G + W+E L Y++WAD+ G+ RV +
Sbjct: 29 LEAWEARRLLGGTYDALGATVFIYAGAGGTDAQDWSEMLERCYLQWADRRGFAVRVEART 88
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFP-----HEATLACVDVV 183
G+KS T+E E YA+GYL+ E G H L+ F G+F + + A VDV+
Sbjct: 89 PGDEAGLKSVTLEIEGRYAYGYLASEKGTHRLVRTSPFNKGAFSFIHATRQTSFAAVDVM 148
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKM 243
P L+ E S G+ + + A ++H+PTGI V+ ER+ N+
Sbjct: 149 PT-------LEDKIEVTTMRSGGAGGQNVNKVETAVRMKHLPTGIVVRCEEERSQAMNRA 201
Query: 244 KALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPD 303
KA+ RLKAKL + E+ +++V+ ++ + + W ++ R YV HPYK+V+DV+TG++ D
Sbjct: 202 KAIARLKAKLAAVAEERRLADVAAVRGDVVKAEWGQQIRNYVFHPYKMVKDVRTGMETSD 261
Query: 304 FNSVLDGNIKPFIEAHINSRRSSDTD 329
V++G + F A + R S D
Sbjct: 262 VEGVMNGKLDEFQNAWLRWRASEKDD 287
>gi|226365870|ref|YP_002783653.1| peptide chain release factor 2 [Rhodococcus opacus B4]
gi|254790919|sp|C1B1L3.1|RF2_RHOOB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226244360|dbj|BAH54708.1| peptide chain release factor 2 [Rhodococcus opacus B4]
Length = 368
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 178/324 (54%), Gaps = 13/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGAEAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYIRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +SVLDG+I F+E+ I R
Sbjct: 338 EVNNPSSVLDGDIDGFLESGIRWR 361
>gi|305679674|ref|ZP_07402484.1| peptide chain release factor 2 [Corynebacterium matruchotii ATCC
14266]
gi|305660294|gb|EFM49791.1| peptide chain release factor 2 [Corynebacterium matruchotii ATCC
14266]
Length = 368
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 171/329 (51%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L+ LR + + ++ +LAE E + A
Sbjct: 43 SLWDDPEHAQQVTSELSQVQVQLKRLQSLRSRLTDLPIMYELAEEEGEGTDI---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ +D E++ +L G D A + I++G+ G+ WAE L+ MY+RWA+K+G +
Sbjct: 100 TDLRADIDALEVTTMLSGEYDSREALINIRSGAGGVDAADWAEMLMRMYIRWAEKQGRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E G H L+ + + + A V+V+
Sbjct: 160 EVYDISYAEEAGIKSATFIVHGEYMYGTLSVEQGVHRLVRISPFDNQARRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D +L ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEITDHIDIPDSELRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL ++ + + + + W + R YV HP+++V+D++TG +
Sbjct: 279 NKASALRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRNYVLHPFQMVKDLRTGFE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ D VLDG++ F+EA I R+ T+
Sbjct: 338 VGDPQKVLDGDLDKFLEAGIRWRKGQHTE 366
>gi|126695538|ref|YP_001090424.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9301]
gi|126542581|gb|ABO16823.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9301]
Length = 354
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 147/261 (56%), Gaps = 6/261 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMSLIINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ L I ++DL + S G+ + + A I H+P+GI+V+ ER+ NK KA+
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCTQERSQLQNKEKAM 269
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LK+KLLVI EQ + V+ IK + + W + R YV HPY++V+D++T + + +S
Sbjct: 270 LLLKSKLLVIAKEQRAAEVADIKGDIVEAAWGNQIRNYVFHPYQMVKDLRTMQETNELDS 329
Query: 307 VLDGNIKPFIEAHINSRRSSD 327
VLDG ++PFI + SS+
Sbjct: 330 VLDGGLEPFIHELLRMNISSN 350
>gi|311739769|ref|ZP_07713603.1| peptide chain release factor RF2 [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304842|gb|EFQ80911.1| peptide chain release factor RF2 [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 367
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 172/330 (52%), Gaps = 13/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + E+ ++ +LAE E D L
Sbjct: 43 SLWDDPAHAQQVTSELSAAQAKVRKLESLRVRLEDMPVMYELAEEEG-DTSLAD----DE 97
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 98 LDSLESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHK 157
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V
Sbjct: 158 VDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEV 217
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +E + + I D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 218 LPV-VEQTDHIDIPDNDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQI 276
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 277 QNKASAMRVLQAKLLERKRQEEQAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNF 335
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ D + VLDG+I F+E+ I R D
Sbjct: 336 EVGDPSKVLDGDIDGFLESGIRWRMQQQED 365
>gi|212716462|ref|ZP_03324590.1| hypothetical protein BIFCAT_01386 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660715|gb|EEB21290.1| hypothetical protein BIFCAT_01386 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 376
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 163/326 (50%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYR 63
LWDDP + +V KL+ V + LK L ++ + L E+ E D A
Sbjct: 44 GLWDDPENAQKVTSKLS---AVQSQLKRLSSASQRIDDVETLVELGQEEDDADTLAEARS 100
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ L E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY
Sbjct: 101 EVESIQNDLADMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGY 160
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+
Sbjct: 161 KAKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVE 220
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
VVPL T PD +I + S P G+ + A I HIPTGI V ER+
Sbjct: 221 VVPLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVVTMQDERS 278
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++T
Sbjct: 279 QIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FIEA I R
Sbjct: 338 GYETSQTQAVFDGDIDAFIEAGIRWR 363
>gi|168213727|ref|ZP_02639352.1| peptide chain release factor 2 [Clostridium perfringens CPE str.
F4969]
gi|170714817|gb|EDT26999.1| peptide chain release factor 2 [Clostridium perfringens CPE str.
F4969]
Length = 323
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIINEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 243 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 303 SNVNGVMDGDIDNFIIAYLNS 323
>gi|291445100|ref|ZP_06584490.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
15998]
gi|291348047|gb|EFE74951.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
15998]
Length = 368
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFELAEAEG-DADAQAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 MGNPEAVFNGEIDGFVEAGIRWRKQRE 367
>gi|441206141|ref|ZP_20972932.1| peptide chain release factor 2 [Mycobacterium smegmatis MKD8]
gi|440628689|gb|ELQ90485.1| peptide chain release factor 2 [Mycobacterium smegmatis MKD8]
Length = 368
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 177/333 (53%), Gaps = 16/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V L+ + + ++ LR + ++ ++ +LA + G A
Sbjct: 43 NLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYELA----AEAGGPDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELAKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y + D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V E+
Sbjct: 218 VEVLPV-VETTDHIDIPENDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++
Sbjct: 277 SQLQNKVSAMRVLQAKLLERKRLEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
T ++ + SVLDG+I F+EA I R D D
Sbjct: 336 TEYEVGNPASVLDGDIDGFLEAGIRWRNRKDDD 368
>gi|118473158|ref|YP_886446.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
gi|399986457|ref|YP_006566806.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
gi|166225108|sp|A0QU58.1|RF2_MYCS2 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|118174445|gb|ABK75341.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
gi|399231018|gb|AFP38511.1| Peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
Length = 368
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 178/333 (53%), Gaps = 16/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V L+ + + ++ LR + ++ ++ +LA + G A
Sbjct: 43 NLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYELA----AEAGGPDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELAKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y + D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ ++I + D+ ++ S G+ + A + HIPTGI V E+
Sbjct: 218 VEVLPV-VETTDHIEIPENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++
Sbjct: 277 SQLQNKVSAMRVLQAKLLERKRLEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
T ++ + SVLDG+I F+EA I R D D
Sbjct: 336 TEYEVGNPASVLDGDIDGFLEAGIRWRNRKDDD 368
>gi|452911608|ref|ZP_21960275.1| Peptide chain release factor 2 [Kocuria palustris PEL]
gi|452833245|gb|EME36059.1| Peptide chain release factor 2 [Kocuria palustris PEL]
Length = 373
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 174/332 (52%), Gaps = 14/332 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + ++ +L+ + L L + E+ +++ QLAE E D A
Sbjct: 44 DLWDDVENAQKLTSQLSHKQSQLKRLDALGERIEDIEVMVQLAEEED-DADTLALAEEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K L Q E++ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 VSVRKDLAQLEITTLLSGEYDERDAVVTIRAGAGGVDAADFAEILMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 KVLDTSYAEEAGLKSATFEVKTPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 223 PL-IESDDTIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L++++L+ Q K+E ++ W + R YV +PY++V+D++T
Sbjct: 282 NRAAALRVLQSRILL----QRKQEADAKKKEMAGDVKASWGDQMRSYVLNPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + +SV DG I F++A I R + D
Sbjct: 338 NHEEGNPSSVFDGQIDDFVDAGIRWRAGATPD 369
>gi|312621634|ref|YP_004023247.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202101|gb|ADQ45428.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 372
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 170/326 (52%), Gaps = 7/326 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + + +
Sbjct: 46 FWQDIENSQKVLQKIKRIKDKIERFQKLYSQWEDLKVLTELS-IEEGNHEMSEELEKELI 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + +D++++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 105 SLERKIDEFKIEILLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKVE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+K+ TI E A+GYL E G H L+ + + + A V+V+P
Sbjct: 165 TLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D++I +EDL + S G+ + + A I+HIPTGI V ER+ N
Sbjct: 225 -EVEDDTDIEIKEEDLEIDTYRSSGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHKN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ AL LKAKLL + ++ + +K E W + R YV PY LV+D +T ++
Sbjct: 284 REIALKILKAKLLELKEKERREKIQKLKGEQTEIGWGNQIRSYVFCPYTLVKDHRTEAEV 343
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
+ +V+DG I FI A++ R+ +
Sbjct: 344 GNVEAVMDGEIDVFINAYLKKFRNEE 369
>gi|365156912|ref|ZP_09353199.1| peptide chain release factor 2 [Bacillus smithii 7_3_47FAA]
gi|363626379|gb|EHL77369.1| peptide chain release factor 2 [Bacillus smithii 7_3_47FAA]
Length = 327
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 165/325 (50%), Gaps = 11/325 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D K+ + ++ A+ LK +VN KDL E L L + E D L
Sbjct: 5 DFWNDQQKA-QAIINEANGLKDLVNEYKDLLETQENLDLTYDLVKEEN-DTELKAELESE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D +K L++YE+ LL P D A + + G+ G + W LL MY RWA+K+GY+
Sbjct: 63 LEDFTKRLNRYELELLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKKGYK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F E +++I +EDL + S G+ + A I H+PTGI V ER+
Sbjct: 182 VMPEFNE-EVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQSERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+N LKAKL E+ ++ I+ E W + R YV HPY +V+D +T
Sbjct: 241 IQNRERAMNMLKAKLYQKKLEEQEKELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
+ + +V+DG I FI+A++ SR
Sbjct: 301 TETGNVQAVMDGEIDMFIDAYLRSR 325
>gi|332671116|ref|YP_004454124.1| peptide chain release factor 2 [Cellulomonas fimi ATCC 484]
gi|332340154|gb|AEE46737.1| peptide chain release factor 2 [Cellulomonas fimi ATCC 484]
Length = 382
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 175/329 (53%), Gaps = 16/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRA 64
NLWDDP + +V L+ + ++ + L + ++ + + +L EME D A
Sbjct: 56 NLWDDPDAAQKVTSALSATQAELDRVAKLGGRIDDLETLVELGVEME--DEDSLAEAEVE 113
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 114 LTGIRKDLGELEVRTLLNGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYP 173
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+V
Sbjct: 174 TTVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 233
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E + ++I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 234 IPL-IEQTDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQI 292
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ AL L+++LL++ + K+E +I W + R YV PY++V+D++
Sbjct: 293 QNRAAALRVLQSRLLLVRK----AEEDAKKKELAGDIKASWGDQMRSYVLQPYQMVKDLR 348
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + ++V DG+I FIEA I RRS
Sbjct: 349 TEHEVGNPSAVFDGDIDDFIEAGIRWRRS 377
>gi|240143320|ref|ZP_04741921.1| peptide chain release factor 2 [Roseburia intestinalis L1-82]
gi|257204691|gb|EEV02976.1| peptide chain release factor 2 [Roseburia intestinalis L1-82]
gi|291536819|emb|CBL09931.1| bacterial peptide chain release factor 2 (bRF-2) [Roseburia
intestinalis M50/1]
gi|291539122|emb|CBL12233.1| bacterial peptide chain release factor 2 (bRF-2) [Roseburia
intestinalis XB6B4]
Length = 338
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDDP S + + +L V L+ + E+ + + ++ E D L
Sbjct: 5 NFWDDPVVSQKKMKELKSMKDDVATYASLKTEFEDIETLIEMG-YEENDASLIPEIQEML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +K + + LL G D +GA V++ AG+ G WA L MY RWA +G+
Sbjct: 64 DEFTKTYEGIRIKTLLSGEYDSDGAIVSLHAGAGGTESCDWAAMLYRMYTRWASDKGFSV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T + E A+GY+ E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGEEAGIKSITFQINGENAYGYMKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I+++DL + S G+ + A I HIPTGI VQ ER+ F
Sbjct: 184 P-DIEEDLDVEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGIVVQCQNERSQFQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ ++ + I+ E W + R YV PY +V+D +TG++
Sbjct: 243 NKDKAMQMLKAKLYLLKQQENAEKAADIRGEVTEIGWGNQIRSYVMQPYTMVKDHRTGVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +SV+DG I FI ++
Sbjct: 303 TGNVDSVMDGKIDIFINGYL 322
>gi|168205594|ref|ZP_02631599.1| peptide chain release factor 2 [Clostridium perfringens E str.
JGS1987]
gi|169344216|ref|ZP_02865198.1| peptide chain release factor 2 [Clostridium perfringens C str.
JGS1495]
gi|422346837|ref|ZP_16427751.1| peptide chain release factor 2 [Clostridium perfringens WAL-14572]
gi|169297675|gb|EDS79775.1| peptide chain release factor 2 [Clostridium perfringens C str.
JGS1495]
gi|170662903|gb|EDT15586.1| peptide chain release factor 2 [Clostridium perfringens E str.
JGS1987]
gi|373225670|gb|EHP48001.1| peptide chain release factor 2 [Clostridium perfringens WAL-14572]
Length = 323
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 243 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 303 SNVNGVMDGDIDNFIIAYLNS 323
>gi|365861270|ref|ZP_09401044.1| peptide chain release factor 2 [Streptomyces sp. W007]
gi|364009264|gb|EHM30230.1| peptide chain release factor 2 [Streptomyces sp. W007]
Length = 368
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LA E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLEVLFELAADEG-DADAQAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYIRWAERHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ S+
Sbjct: 341 MGNPEAVFNGEIDGFVEAGIRWRKQSE 367
>gi|443475640|ref|ZP_21065582.1| bacterial peptide chain release factor 2 (bRF-2) [Pseudanabaena
biceps PCC 7429]
gi|443019475|gb|ELS33558.1| bacterial peptide chain release factor 2 (bRF-2) [Pseudanabaena
biceps PCC 7429]
Length = 368
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 150/257 (58%), Gaps = 6/257 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
++++++ +LL G D A +TI AG+ G + W E LL MY R+ + +GY+ + +
Sbjct: 109 MERWDLEQLLSGTYDKYDAVLTINAGAGGTDSQDWTEMLLRMYTRFCESQGYKVEISEIS 168
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T+ YA+GYL+ E G H L+ N + + + A V+V+PL LE
Sbjct: 169 EGEEAGIKSVTLLVHGRYAYGYLAPEKGTHRLVRISPFNANDKRQTSFAGVEVMPL-LEE 227
Query: 190 SPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVQSLGERNHFANKMKAL 246
DL I ++L ++ G+ Q++ K A I H+PTGI+V+ ER+ NK A+
Sbjct: 228 DVDLDIDPKELEITTTRAGGKGGQNVNKVETAVRITHLPTGISVRCTQERSQLQNKENAM 287
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LKAKLL+I EQ ++ I+ + + W + R YV HPY+LV+D++TG + + +
Sbjct: 288 RLLKAKLLIIAQEQRAQKIADIRGDMVEAAWGNQIRNYVFHPYQLVKDLRTGEETTNIQN 347
Query: 307 VLDGNIKPFIEAHINSR 323
V+DG+++PFI++++ +
Sbjct: 348 VMDGDLEPFIQSYLRQQ 364
>gi|423076128|ref|ZP_17064842.1| peptide chain release factor 2 [Desulfitobacterium hafniense DP7]
gi|361852945|gb|EHL05143.1| peptide chain release factor 2 [Desulfitobacterium hafniense DP7]
Length = 314
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 5/265 (1%)
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + LD E+ LL GP D A VT+ AG+ G + W L MY+R+ ++ GY+
Sbjct: 48 LALQQRLDGLELEILLSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKV 107
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ F E AFGYL E G H L+ + S + A VDV+
Sbjct: 108 ETMDFLPGDEAGIKSATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 167
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E + ++QI EDL + + G+ + A I H+PTGI VQS ER+
Sbjct: 168 PEVMEDNAEIQIPPEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQSERSQIQ 227
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ L L+AKLL + +Q +S I+ E W + R YV HPY +V+D +T +
Sbjct: 228 NRAYCLRILQAKLLELKRKQQEDEISEIRGEQQEIAWGSQIRSYVFHPYNMVKDHRTNEE 287
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ +V+DG I FI A++ ++
Sbjct: 288 TANTGAVMDGEIDQFIAAYLQKTKA 312
>gi|239988119|ref|ZP_04708783.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
11379]
Length = 352
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 28 SLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFELAEAEG-DADAQAEAETEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 87 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 207 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 265
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 266 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 324
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 325 MGNPEAVFNGEIDGFVEAGIRWRKQRE 351
>gi|110801299|ref|YP_696849.1| peptide chain release factor 2 [Clostridium perfringens ATCC 13124]
Length = 362
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 45 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 103 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 163 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 223 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 282 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 341
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 342 SNVNGVMDGDIDNFIIAYLNS 362
>gi|89897615|ref|YP_521102.1| hypothetical protein DSY4869 [Desulfitobacterium hafniense Y51]
gi|89337063|dbj|BAE86658.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 315
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 5/265 (1%)
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + LD E+ LL GP D A VT+ AG+ G + W L MY+R+ ++ GY+
Sbjct: 49 LALQQRLDGLELEILLSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKV 108
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ F E AFGYL E G H L+ + S + A VDV+
Sbjct: 109 ETMDFLPGDEAGIKSATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 168
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E + ++QI EDL + + G+ + A I H+PTGI VQS ER+
Sbjct: 169 PEVMEDNAEIQIPPEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQSERSQIQ 228
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ L L+AKLL + +Q +S I+ E W + R YV HPY +V+D +T +
Sbjct: 229 NRAYCLRILQAKLLELKRKQQEDEISEIRGEQQEIAWGSQIRSYVFHPYNMVKDHRTNEE 288
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ +V+DG I FI A++ ++
Sbjct: 289 TANTGAVMDGEIDQFIAAYLQKTKA 313
>gi|424851867|ref|ZP_18276264.1| peptide chain release factor 2 [Rhodococcus opacus PD630]
gi|356666532|gb|EHI46603.1| peptide chain release factor 2 [Rhodococcus opacus PD630]
Length = 371
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 178/324 (54%), Gaps = 13/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 47 LWNDQEHAQQVTSQLSHSQAELRRVEELRSRLDDMPVLYELAEDEGAEAIADADAERHSL 106
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 107 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 163 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 223 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 282 QNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + ++VLDG+I F+E+ I R
Sbjct: 341 EVNNPSAVLDGDIDGFLESGIRWR 364
>gi|294812911|ref|ZP_06771554.1| Peptide chain release factor 2 [Streptomyces clavuligerus ATCC
27064]
gi|326441313|ref|ZP_08216047.1| peptide chain release factor 2 [Streptomyces clavuligerus ATCC
27064]
gi|294325510|gb|EFG07153.1| Peptide chain release factor 2 [Streptomyces clavuligerus ATCC
27064]
Length = 368
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSRLSHLQAELRKTEALRARIDDLGVLFELAEAED-DADTLAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDEREALVNIRAEAGGVDASDFAERLQRMYMRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S ++I + +L ++ + G+ + A I HIPTGI V ER+
Sbjct: 223 PV-VEQSDHVEIDETELRVDVYRASGPGGQGVNTTDSAVRITHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQARMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG I F+EA I RR +
Sbjct: 341 VGNPQAVLDGEIDGFLEAAIRWRRRQE 367
>gi|432343023|ref|ZP_19592235.1| peptide chain release factor 2 [Rhodococcus wratislaviensis IFP
2016]
gi|430771944|gb|ELB87760.1| peptide chain release factor 2 [Rhodococcus wratislaviensis IFP
2016]
Length = 368
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 178/324 (54%), Gaps = 13/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRSRLDDMPVLYELAEDEGAEAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + ++VLDG+I F+E+ I R
Sbjct: 338 EVNNPSAVLDGDIDGFLESGIRWR 361
>gi|317124427|ref|YP_004098539.1| peptide chain release factor 2 (bRF-2) [Intrasporangium calvum DSM
43043]
gi|315588515|gb|ADU47812.1| bacterial peptide chain release factor 2 (bRF-2) [Intrasporangium
calvum DSM 43043]
Length = 370
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 174/327 (53%), Gaps = 22/327 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEM--EAIDYGLFKRA 61
NLWDD K+ +V +L NA +D R + ++++ + L EM E D A
Sbjct: 43 NLWDDQDKAQQV----TSALSRANAERD-RVLSMDSRINDLETLVEMATEESDQDTMDEA 97
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R + K L + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++
Sbjct: 98 LRDLAKIKKDLGELEVRTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERH 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY +V+D + G+KSAT E YAFG+L+ E G H L+ + + + A
Sbjct: 158 GYPTKVMDTSYAEEAGLKSATFEVNVPYAFGHLNVEGGTHRLVRISPFDNQGRRQTSFAA 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+PL +E+ ++I + +L +F S G+ + A + H+PTGI V E+
Sbjct: 218 VEVIPL-IESDDSIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQ 293
+ N+ AL L+++LL+ Q + + +K+E ++ W + R YV +PY++V+
Sbjct: 277 SQIQNRAAALRVLQSRLLL----QRKAEEAAVKKEMAGDVKASWGDQMRSYVLNPYQMVK 332
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHI 320
D++T + + +V DG+I FIEA I
Sbjct: 333 DLRTDFETGNPAAVFDGDIDGFIEAGI 359
>gi|281185482|sp|Q0TNE1.2|RF2_CLOP1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|255529900|gb|ABG84933.2| peptide chain release factor 2, programmed frameshift [Clostridium
perfringens ATCC 13124]
Length = 362
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 45 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 103 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 163 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 223 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 282 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 341
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 342 SNVNGVMDGDIDNFIIAYLNS 362
>gi|225572941|ref|ZP_03781696.1| hypothetical protein RUMHYD_01132 [Blautia hydrogenotrophica DSM
10507]
gi|225039699|gb|EEG49945.1| peptide chain release factor 2 [Blautia hydrogenotrophica DSM
10507]
Length = 348
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 157/320 (49%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD +S + + +L + ++LR + E+ + + ++ E D L
Sbjct: 19 DFWDDAEESQKKMKELKYMKDDLQTYENLRTQMEDMETLIEMG-YEENDPDLIPEIQEML 77
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K D + LL G D A VT+ AG+ G WA L MY RWADK+G+
Sbjct: 78 DEFQKSFDDIRVKTLLSGEYDSNDAIVTLHAGAGGTESCDWASMLYRMYTRWADKKGFSL 137
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T E E A+GYL E G H L+ N + + + DV+
Sbjct: 138 EVLDYLDGDEAGIKSVTFEVRGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 197
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I D+D+ + S G+ + A I H+PTGI VQ ER+
Sbjct: 198 P-DIEEDVDVEIRDDDIRVDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQHM 256
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ ++ +S I+ E W + R YV PY +V+D +T +
Sbjct: 257 NKDKAMQMLKAKLYLLKQQENEEKLSGIRGEVTEIGWGNQIRSYVMQPYTMVKDHRTSEE 316
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +SV+DGNI FI A++
Sbjct: 317 TGNVDSVMDGNIDLFINAYL 336
>gi|300741817|ref|ZP_07071838.1| peptide chain release factor 2 [Rothia dentocariosa M567]
gi|300381002|gb|EFJ77564.1| peptide chain release factor 2 [Rothia dentocariosa M567]
Length = 375
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 175/329 (53%), Gaps = 15/329 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA--EMEAIDYGLFKRAYRA 64
LWDDP + V L+ +N L +L + ++ +++ +LA E E+ L A
Sbjct: 45 LWDDPEHAQRVTSALSHKQAELNRLTNLASRIDDVEVMVELAQTEDESSKEDLLAEAEAE 104
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++ K LD+ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 105 CKELRKKLDELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGYP 164
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+V
Sbjct: 165 TKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 224
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E + L+I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 225 IPL-IEQTDALEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQI 283
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ AL L+++LL++ EQ K+E +I W + R YV HPY++V+D++
Sbjct: 284 QNRAAALRVLQSRLLMLRQEQE----DAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLR 339
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
TG + + +SVLDG + FIE I R S
Sbjct: 340 TGYEEGNTSSVLDGGLNRFIEEGIRWRAS 368
>gi|408678448|ref|YP_006878275.1| Peptide chain release factor 2 [Streptomyces venezuelae ATCC 10712]
gi|328882777|emb|CCA56016.1| Peptide chain release factor 2 [Streptomyces venezuelae ATCC 10712]
Length = 367
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLAVLFELAE-EMDDPDTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 TSVRKALDEMEVRTLLSGEYDEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E+S ++I + +L ++ + G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VESSDHVEIDESELRVDVYRASGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERQRQEERAKMDALKDSG--SSWGNQMRSYVLHPYQMVKDLRTEFE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + SVLDG I F+EA I R+ +
Sbjct: 340 VGNPQSVLDGEIDGFLEAGIRWRKQQE 366
>gi|222530070|ref|YP_002573952.1| hypothetical protein Athe_2103 [Caldicellulosiruptor bescii DSM
6725]
gi|222456917|gb|ACM61179.1| hypothetical protein Athe_2103 [Caldicellulosiruptor bescii DSM
6725]
Length = 372
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 7/326 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D S +L K+ + + L + E+ K++ +L+ +E ++ + + + +
Sbjct: 46 FWQDIENSQRILQKIKRIKDKIERFQKLYSQWEDLKVLTELS-IEEGNHEMSEELEKELI 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + +D++++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 105 SLERKIDEFKIEILLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKVE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+K+ TI E A+GYL E G H L+ + + + A V+V+P
Sbjct: 165 TLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D++I +EDL + S G+ + + A I+HIPTGI V ER+ N
Sbjct: 225 -EVEDDTDIEIKEEDLEIDTYRSSGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHKN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ AL LKAKLL + ++ + +K E W + R YV PY LV+D +T ++
Sbjct: 284 REIALKILKAKLLELKEKERREKIQKLKGEQTEIGWGNQIRSYVFCPYTLVKDHRTEAEV 343
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
+ +V+DG I FI A++ R+ +
Sbjct: 344 GNVEAVMDGEIDVFINAYLKKFRNEE 369
>gi|111023366|ref|YP_706338.1| peptide chain release factor 2 [Rhodococcus jostii RHA1]
gi|397736801|ref|ZP_10503479.1| peptide chain release factor 2 [Rhodococcus sp. JVH1]
gi|123339715|sp|Q0S2Q6.1|RF2_RHOSR RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|110822896|gb|ABG98180.1| peptide chain release factor RF2 [Rhodococcus jostii RHA1]
gi|396927382|gb|EJI94613.1| peptide chain release factor 2 [Rhodococcus sp. JVH1]
Length = 368
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 178/324 (54%), Gaps = 13/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E D A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGADAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + ++VLDG+I F+E+ I R
Sbjct: 338 EVNNPSAVLDGDIDGFLESGIRWR 361
>gi|345015595|ref|YP_004817949.1| peptide chain release factor 2 [Streptomyces violaceusniger Tu
4113]
gi|344041944|gb|AEM87669.1| Peptide chain release factor 2 [Streptomyces violaceusniger Tu
4113]
Length = 370
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V KL+ + ++LR + ++ +++ +LA E D A
Sbjct: 44 SLWDDPENAQKVTSKLSYLQGHLRRAEELRGRIDDLEVLFELAADEG-DADARAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K +D+ E+ LL G D A V ++A + G+ +AEQL MY+RWA++ GY+
Sbjct: 103 EAVRKAVDEMEVRTLLSGEYDSREALVNVRAEAGGVDAADFAEQLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 QIYETSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG I F+EA I R+ +
Sbjct: 341 VGNPQAVLDGEIDGFLEAGIRWRKQQE 367
>gi|309810763|ref|ZP_07704570.1| peptide chain release factor 2 [Dermacoccus sp. Ellin185]
gi|308435300|gb|EFP59125.1| peptide chain release factor 2 [Dermacoccus sp. Ellin185]
Length = 370
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 175/336 (52%), Gaps = 22/336 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEM--EAIDYGLFKRA 61
+LWDDP + K+ +L NA D R + +A + + L EM E D A
Sbjct: 43 DLWDDPDAAQ----KITSALSRANAEND-RVENMDAAIDDLEVLVEMGTEENDADTLAEA 97
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R + K + + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++
Sbjct: 98 ERELKKLQKAVGELEVRTLLNGEFDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERH 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY +V+D + G+KS T E YAFG LS E G H L+ + + + A
Sbjct: 158 GYPTKVMDTSYAEEAGLKSVTFEVNVPYAFGNLSVEAGTHRLVRISPFDNQGRRQTSFAA 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+VVPL +ET+ ++I + +L +F S G+ + A + HIPTG V E+
Sbjct: 218 VEVVPL-IETTDTIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGTVVSMQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQ 293
+ N+ AL ++++LL++ ++ K+E +I W + R YV HPY++V+
Sbjct: 277 SQIQNRAAALRVMQSRLLLLKKQEE----DAQKKELAGDIKASWGDQMRSYVLHPYQMVK 332
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
D++T ++ + + V DG+I FIEA I +R++ D
Sbjct: 333 DLRTEYEVGNTSGVFDGDIDGFIEAGIRWKRAAARD 368
>gi|386386064|ref|ZP_10071263.1| peptide chain release factor 2 [Streptomyces tsukubaensis
NRRL18488]
gi|385666472|gb|EIF90016.1| peptide chain release factor 2 [Streptomyces tsukubaensis
NRRL18488]
Length = 368
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSRLSHLQAELRKAEHLRGRIDDLAVLFELAEAED-DADTLAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V + +D+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 VSVRRAVDEMEVRTLLSGEYDEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E+S ++I + +L ++ + G+ + A I HIPTGI V ER+
Sbjct: 223 PV-VESSDHVEIDESELRIDVYRASGPGGQGVNTTDSAVRITHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQARMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG I F+EA I R+ +
Sbjct: 341 VGNPQAVLDGEIDGFLEAGIRWRKQQE 367
>gi|289706413|ref|ZP_06502771.1| peptide chain release factor 2 [Micrococcus luteus SK58]
gi|289556908|gb|EFD50241.1| peptide chain release factor 2 [Micrococcus luteus SK58]
Length = 373
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 175/326 (53%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ +V KL+ + + L + E+ + + +LA E + L + A +
Sbjct: 44 DLWDDPEEAQKVTSKLSHRQTDLKRITSLESRIEDLETMVELA-AEEDEPSLLEDANQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L++ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 103 TSIRKALEELEVVTLLSGEYDQRDAVVTIRAGAGGVDAADFAETLMRMYLRWAEQRGWST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +AFG LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVNAPFAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E+ ++I + ++ +F S G+ + A + H+PTGI V E++
Sbjct: 223 PL-IESDDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ + K+E ++ W + R YV +PY++V+D++T
Sbjct: 282 NRAAALRVLQSRLLLLRK----AEEDAKKKEMAGDVKASWGDQMRSYVLNPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + + +SV DG+I F++A I R
Sbjct: 338 GHEEGNPSSVFDGHIDDFVDAGIRWR 363
>gi|339478754|gb|ABE95212.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
breve UCC2003]
Length = 374
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 168/322 (52%), Gaps = 8/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + ++ KL+ + + L + ++ + + +L + E D A
Sbjct: 45 LWDNPDNAQKITSKLSTAESQLKRLTSASQRIDDVETLVELGQEEQ-DQESLDEAQNEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L +E + + I D D+ + S G+ + A I H+PTGI V ER+ N
Sbjct: 224 L-VEATDHVDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 283 RASAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYET 341
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+V DG+I FIEA I R
Sbjct: 342 SQTQAVFDGDINNFIEAGIRWR 363
>gi|296140715|ref|YP_003647958.1| peptide chain release factor 2 [Tsukamurella paurometabola DSM
20162]
gi|296028849|gb|ADG79619.1| peptide chain release factor 2 [Tsukamurella paurometabola DSM
20162]
Length = 371
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 174/332 (52%), Gaps = 13/332 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRAY 62
LW+D + +V +L+ + + + DLR + ++ ++ +LAE E A
Sbjct: 44 LWNDQANAQQVTSQLSHAQSELRRVTDLRQRLDDLPVLYELAEAEEGDDLAAALEDADAD 103
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RA L ++ E+ +L G D A V I+AG+ G+ WAE L+ MY+RWA+K G
Sbjct: 104 RAKL--RGEIEAMEVKTMLSGEYDARDALVNIRAGAGGVDAADWAEMLMRMYIRWAEKHG 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT + +YA+G LS E G H L+ + + + A V
Sbjct: 162 YGVEVYDTSYAEEAGLKSATFAIKTDYAYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +ET+ + + + ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 EVLPV-VETTDHIDVDENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL ++ + + +K + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVAAMKVLQAKLLERKRQEERAQMDALKTTEGAS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ + ++VLDG++ FIEA I R D D
Sbjct: 340 NYEVNNPSAVLDGDLDGFIEAGIRWRMRGDDD 371
>gi|346223954|ref|ZP_08845096.1| hypothetical protein AtheD1_02201 [Anaerophaga thermohalophila DSM
12881]
Length = 334
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 168/323 (52%), Gaps = 15/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL---AEMEAIDYGLFKRAY 62
+ WDDP K+ + + KL VNA +D++ EE ++ + E E D L Y
Sbjct: 7 DFWDDPKKAEQKMKKLKALKSWVNAYEDVKNAIEETSVLLEFLKEGEAEEADVDL---QY 63
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++ KL++ E+ +L+ D GA + I AG+ G + WAE L+ MY+RW ++ G
Sbjct: 64 KKTV---KLIEDLELRNMLQKEEDKLGAILKINAGAGGTESQDWAEMLMRMYIRWGERHG 120
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ + G+KS T++FE +YA+GYL E G H L+ N + + V
Sbjct: 121 YKVTETNYQEGDEAGIKSVTLQFEGDYAYGYLKSENGVHRLVRLSPFNAANKRMTSFTSV 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+PL ++ + +++I+ D+ F S G+ + + ++H PTGI +++ R+
Sbjct: 181 FVIPL-IDDTIEIEINPADITWETFRSSGAGGQNVNKVETGVRLRHAPTGIVIENTESRS 239
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK AL LK++L + + + + I+ + W + R YV PYKLV+DV+T
Sbjct: 240 QGGNKENALRMLKSQLYELELRKKLEEQNKIESQKKKIEWGSQIRSYVLQPYKLVKDVRT 299
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
+ + +VLDG I FI+A++
Sbjct: 300 NHETSNVQAVLDGEIDDFIKAYL 322
>gi|18311152|ref|NP_563086.1| peptide chain release factor 2 [Clostridium perfringens str. 13]
gi|18145835|dbj|BAB81876.1| peptide chain release factor 2 [Clostridium perfringens str. 13]
Length = 323
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 162/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ ++L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFRNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 243 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 303 SNVNGVMDGDIDNFIIAYLNS 323
>gi|115311854|sp|Q4L4H9.2|RF2_STAHJ RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 371
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WDD K+ +V+ K VVN +L + E+ +L + E +D +
Sbjct: 39 MMTEPDFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQ-EELDGDVKSD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LD + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 98 LEQNVLDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 QGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 218 SCDVIPEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LKAKL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKAKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG I PFIE+++
Sbjct: 338 RTNEETGKVDAVMDGEIGPFIESYL 362
>gi|422875084|ref|ZP_16921569.1| peptide chain release factor 2 [Clostridium perfringens F262]
gi|380304079|gb|EIA16372.1| peptide chain release factor 2 [Clostridium perfringens F262]
Length = 323
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIEIILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 243 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 303 SNVNGVMDGDIDNFIIAYLNS 323
>gi|291439311|ref|ZP_06578701.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
gi|291342206|gb|EFE69162.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
Length = 368
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ +L+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ADVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S + I + DL ++ S G+ + A I HIPTGI V ER+
Sbjct: 223 PV-VEQSDHVDIDESDLRVDVYRSSGPGGQGVNTTDSAVRITHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NRATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + SV +G I F+EA I R+ +
Sbjct: 341 VGNPESVFNGEIDGFLEAGIRWRKQQE 367
>gi|443289014|ref|ZP_21028108.1| Peptide chain release factor RF-2 [Micromonospora lupini str. Lupac
08]
gi|385887692|emb|CCH16182.1| Peptide chain release factor RF-2 [Micromonospora lupini str. Lupac
08]
Length = 373
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 172/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V +L+ ++ L LR + ++A+++ +LAE EA D G+
Sbjct: 44 DLWDDQAKAQQVTSQLSYVNGEISKLGSLRSQLDDARVLLELAEAEA-DPGVLTEVEAEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TSLTKSIQEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFAVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ E + + I + ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 223 PV-TEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ ++ +K + W + R YV HPY++V+D++T +
Sbjct: 282 NKASALRVLQARLLERKRQEEEEKMAGLKSGGTSS-WGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ + V DG + FIEA I R+
Sbjct: 341 TGNPSGVFDGELDDFIEAGIRWRK 364
>gi|255323776|ref|ZP_05364902.1| peptide chain release factor 2 [Corynebacterium tuberculostearicum
SK141]
gi|255298956|gb|EET78247.1| peptide chain release factor 2 [Corynebacterium tuberculostearicum
SK141]
Length = 367
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 172/330 (52%), Gaps = 13/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + E+ ++ +LAE E D L
Sbjct: 43 SLWDDPAHAQKVTSELSAAQAKVRKLESLRGRLEDMPVMYELAEEEG-DTSLAD----DE 97
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 98 LDSLESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHK 157
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V
Sbjct: 158 VDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEV 217
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +E + + I D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 218 LPV-VEQTDHIDIPDNDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQI 276
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 277 QNKASAMRVLQAKLLERKRQEEQAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNF 335
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ D + VLDG+I F+E+ I R D
Sbjct: 336 EVGDPSKVLDGDIDGFLESGIRWRMQQQED 365
>gi|291456213|ref|ZP_06595603.1| peptide chain release factor 2 [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|384197445|ref|YP_005583189.1| peptide chain release factor 2 [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|417942798|ref|ZP_12586060.1| Peptide chain release factor 2 [Bifidobacterium breve CECT 7263]
gi|291381490|gb|EFE89008.1| peptide chain release factor 2 [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|333110998|gb|AEF28014.1| peptide chain release factor 2 [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|376166517|gb|EHS85418.1| Peptide chain release factor 2 [Bifidobacterium breve CECT 7263]
Length = 374
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 168/322 (52%), Gaps = 8/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + ++ KL+ + + L + ++ + + +L + E D A
Sbjct: 45 LWDNPDNAQKITSKLSAAESQLKRLTSASQRIDDVETLVELGQEEQ-DQESLDEAQNEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L +E + + I D D+ + S G+ + A I H+PTGI V ER+ N
Sbjct: 224 L-VEATDHVDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 283 RASAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYET 341
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+V DG+I FIEA I R
Sbjct: 342 SQTQAVFDGDINNFIEAGIRWR 363
>gi|384101336|ref|ZP_10002375.1| peptide chain release factor 2 [Rhodococcus imtechensis RKJ300]
gi|419964746|ref|ZP_14480699.1| peptide chain release factor 2 [Rhodococcus opacus M213]
gi|383840890|gb|EID80185.1| peptide chain release factor 2 [Rhodococcus imtechensis RKJ300]
gi|414569858|gb|EKT80598.1| peptide chain release factor 2 [Rhodococcus opacus M213]
Length = 368
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 178/324 (54%), Gaps = 13/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRSRLDDMPVLYELAEDEGAEAIADVDAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + ++VLDG+I F+E+ I R
Sbjct: 338 EVNNPSAVLDGDIDGFLESGIRWR 361
>gi|311111708|ref|YP_003982930.1| peptide chain release factor RF2 [Rothia dentocariosa ATCC 17931]
gi|310943202|gb|ADP39496.1| peptide chain release factor RF2 [Rothia dentocariosa ATCC 17931]
Length = 375
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 175/329 (53%), Gaps = 15/329 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA--EMEAIDYGLFKRAYRA 64
LWDDP + V L+ +N L +L + ++ +++ +LA E E+ L A
Sbjct: 45 LWDDPEHAQRVTSALSHKQAELNRLTNLASRIDDVEVMVELAQTEDESSAEDLLAEAEAE 104
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++ K LD+ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 105 CKELRKKLDELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGYP 164
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+V
Sbjct: 165 TKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 224
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E + L+I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 225 IPL-IEQTDALEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQI 283
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ AL L+++LL++ EQ K+E +I W + R YV HPY++V+D++
Sbjct: 284 QNRAAALRVLQSRLLMLRQEQE----DAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLR 339
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
TG + + +SVLDG + FIE I R S
Sbjct: 340 TGYEEGNTSSVLDGGLNRFIEEGIRWRAS 368
>gi|68535523|ref|YP_250228.1| peptide chain release factor 2 [Corynebacterium jeikeium K411]
gi|260579727|ref|ZP_05847586.1| peptide chain release factor 2 [Corynebacterium jeikeium ATCC
43734]
gi|68263122|emb|CAI36610.1| peptide chain release factor RF-2 [Corynebacterium jeikeium K411]
gi|258602157|gb|EEW15475.1| peptide chain release factor 2 [Corynebacterium jeikeium ATCC
43734]
Length = 377
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 173/328 (52%), Gaps = 12/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID-----YGLFKR 60
+LWDDP + +V +L+ + +K LR + ++ ++ +AE EA D +
Sbjct: 43 SLWDDPDHAQQVTSELSRVQSKLKKVKGLRQRLDDLPVLYDMAEEEAGDDPDAAQEAVQL 102
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A ++ + ++ E++ +L G D A + I++ + G+ WAE LL MY RWA+K
Sbjct: 103 ADTEREELRQEIESLEVTTMLSGEYDEREAVLNIRSAAGGVDAADWAEMLLRMYTRWAEK 162
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSATI EY +G LS E G H L+ + + + A
Sbjct: 163 AGHKVEVYDISYAEEAGIKSATIVIHGEYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 222
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +E + + I + D+ ++ S G+ + A + H+PTGI V E
Sbjct: 223 EVEVLPV-VEQTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNE 281
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + N W + R YV HPY++V+D+
Sbjct: 282 KSQIQNKASAMRVLQAKLLERKRQEEQAEMDALKGDG-SNSWGNQMRNYVLHPYQMVKDL 340
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T +++ D + VLDG++ F+EA I R
Sbjct: 341 RTNVEVNDPSKVLDGDLDGFLEAGIRWR 368
>gi|404442032|ref|ZP_11007214.1| peptide chain release factor 2 [Mycobacterium vaccae ATCC 25954]
gi|403657659|gb|EJZ12425.1| peptide chain release factor 2 [Mycobacterium vaccae ATCC 25954]
Length = 371
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 13/333 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD ++ +V L+ + + L++LR + E+ ++ +LA E G + A
Sbjct: 43 QLWDDQARAQKVTSDLSHAQNELRRLEELRGRIEDLPVLYELASEED-GAGGAEALEEAD 101
Query: 66 LDVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 102 AELAKLREDIAAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQHN 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V E+
Sbjct: 221 VEVLPV-VETTDHIDIPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 279
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+AKLL E+ + + +K + + W + R YV HPY++V+D++
Sbjct: 280 SQLQNKVAAMRVLQAKLLARKKEEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
T ++ + +VLDG+I F+EA I R D D
Sbjct: 339 TEYEVGNPAAVLDGDIDGFLEAGIRWRNRKDDD 371
>gi|300781771|ref|ZP_07091625.1| peptide chain release factor RF2 [Corynebacterium genitalium ATCC
33030]
gi|300533478|gb|EFK54539.1| peptide chain release factor RF2 [Corynebacterium genitalium ATCC
33030]
Length = 364
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 171/325 (52%), Gaps = 11/325 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V +L+ V ++ LR + ++ ++ +LA E DY L A
Sbjct: 43 SLWDDPEHAQSVTTELSSVQARVRRVRSLRQRIDDLPVMYELAAEEG-DYTL---AEDEL 98
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D++ ++ E++ +L G D A V I++G+ G+ WAE L+ MY+RWA+K G++
Sbjct: 99 ADLTTAVETLEVTTMLSGEYDQREAVVNIRSGAGGVDAADWAEMLMRMYIRWAEKNGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A I H PTGI V E++
Sbjct: 219 PV-VEKTDHIDIPDSEIRIDVYRSSGPGGQSVNTTDSAVRITHEPTGIVVTCQNEKSQIQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L++KLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 278 NKASAMNVLQSKLLERKRQEEKAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 336
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ D VLDG+I F+E+ I R +
Sbjct: 337 VGDPQKVLDGDIDGFLESGIRWRST 361
>gi|239917286|ref|YP_002956844.1| peptide chain release factor 2 [Micrococcus luteus NCTC 2665]
gi|239838493|gb|ACS30290.1| bacterial peptide chain release factor 2 (bRF-2) [Micrococcus
luteus NCTC 2665]
Length = 373
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 174/326 (53%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ +V KL+ + + L + E+ + + +LA E + L A +
Sbjct: 44 DLWDDPEEAQKVTSKLSHRQTDLKRITSLESRIEDLETMVELA-AEEDEPSLLDDANQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L++ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 103 TSIRKALEELEVVTLLSGEYDQRDAVVTIRAGAGGVDAADFAETLMRMYLRWAEQRGWST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +AFG LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVNAPFAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E+ ++I + ++ +F S G+ + A + H+PTGI V E++
Sbjct: 223 PL-IESDDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ + K+E ++ W + R YV +PY++V+D++T
Sbjct: 282 NRAAALRVLQSRLLLLRK----AEEDAKKKEMAGDVKASWGDQMRSYVLNPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + + +SV DG+I F++A I R
Sbjct: 338 GHEEGNPSSVFDGHIDDFVDAGIRWR 363
>gi|357399593|ref|YP_004911518.1| Peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386355632|ref|YP_006053878.1| peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337766002|emb|CCB74713.1| Peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365806140|gb|AEW94356.1| peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 368
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 173/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + E+ ++ +LAE E D A
Sbjct: 44 SLWDDPDNAQKITSRLSYLQGELRKTEALRSRIEDLAVLFELAEAEN-DADTRAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V + +D+ E+ LL G D A V+++A + G+ +AEQL MY+RWA++ GY
Sbjct: 103 VSVRQAVDEMEVRTLLSGEYDAREALVSVRAEAGGVDAADFAEQLQRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V++ + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVLETSYAEEAGIKSTTFAVKSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NRASAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTDHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ + +VLDG I F+EA I R+
Sbjct: 341 VGNPQAVLDGEIDGFLEAGIRWRK 364
>gi|418322606|ref|ZP_12933924.1| peptide chain release factor 2 [Staphylococcus pettenkoferi VCU012]
gi|365231322|gb|EHM72373.1| peptide chain release factor 2 [Staphylococcus pettenkoferi VCU012]
Length = 332
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 161/328 (49%), Gaps = 6/328 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + WDD K+ E++ K VVN +DL E+ +L E D + +
Sbjct: 1 MMADPSFWDDQNKAQEIIDKNNALKSVVNGFRDLESTLEDMDATRELL-AEEYDEDMKQD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D LD +E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LESDVEDYQSKLDSFELQLLLDGPYDANNAILELHPGAGGTESQDWTSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ V D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVEVADYLPGDEAGVKSVTLIIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPEFDNNEIEIEINPDDISVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LKAKL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKAKLYQLKLEEQEQEMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T + ++V+DG+I PFIEA++ S+
Sbjct: 300 RTNTETGKVDAVMDGDIGPFIEAYLRSQ 327
>gi|167628822|ref|YP_001679321.1| peptide chain release factor 2 [Heliobacterium modesticaldum Ice1]
gi|167591562|gb|ABZ83310.1| peptide chain release factor 2 [Heliobacterium modesticaldum Ice1]
Length = 333
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 165/325 (50%), Gaps = 7/325 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M++ WDD ++ + + +L V A +DLR + E+ ++ +L E D +
Sbjct: 1 MIQEPGFWDDTERAQKTMQELTGLKDKVKAYRDLRSQWEDLCVLRELG-AEENDAEILAE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ LD++ + LL GP D A +T+ AG+ G W E LL MY+RW +K
Sbjct: 60 IEAGIQTITAELDRWHLELLLNGPYDRNNALLTLHAGAGGTEAMDWNEMLLRMYIRWGEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY+ ++D G+KSAT+ E A+GYL GE G H L+ + S + A
Sbjct: 120 RGYKVELLDSLPGDEAGIKSATLSVVGENAYGYLKGEMGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
++V+P + ++QI EDL F + G+ + + A I HIPTGI V E
Sbjct: 180 SLEVLP-EVSDGAEIQIRPEDLKVDTFRAGGAGGQHVNKTESAVRITHIPTGIVVACQSE 238
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ L+AKL ++ + V+ +K + + + R YV HPY LV+D
Sbjct: 239 RSQIQNRATAMRMLQAKLFERQRQEQEAEVNRLKGDQQDIAFGSQIRSYVFHPYNLVKDH 298
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T ++ + ++V+DG + FI A++
Sbjct: 299 RTNTEVGNVHAVMDGELDEFISAYL 323
>gi|72162878|ref|YP_290535.1| peptide chain release factor 2 [Thermobifida fusca YX]
gi|71916610|gb|AAZ56512.1| bacterial peptide chain release factor 2 (bRF-2) [Thermobifida
fusca YX]
Length = 375
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 173/329 (52%), Gaps = 10/329 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ V+ ++++R + ++ ++ +LA E D A R
Sbjct: 45 LWNDQANAQKVTRRLSFLESEVSKVENIRSRIDDLGVLFELAAAEN-DAETLAEARRELA 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + E+ LL GP D A ++I A + G+ W + L MY+RWA++ GY
Sbjct: 104 ALRKDISDLEVRTLLSGPYDEREALISINAQAGGVDAADWTQMLQRMYLRWAERHGYPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G L GE G H L+ F N S + + A VDVV
Sbjct: 164 IYETSYAEEAGIKSTTFVVKAPYAYGMLRGEHGTHRLVRISPFDNQS-RRQTSFAGVDVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VEQSDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A++ L+AKLL ++ + ++ ++ E+ W + R YV HPY+ V+D++TG++
Sbjct: 282 NRATAMSILQAKLLERKRQEEEAELAALRGES-ARAWGTQMRNYVLHPYQSVKDIRTGVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ ++VLDG I FI A I RS + D
Sbjct: 341 TGNTSAVLDGEIDEFINAGIRWLRSRERD 369
>gi|70727136|ref|YP_254052.1| peptide chain release factor 2 [Staphylococcus haemolyticus
JCSC1435]
gi|68447862|dbj|BAE05446.1| peptide chain release factor 2 [Staphylococcus haemolyticus
JCSC1435]
Length = 332
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 162/320 (50%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +V+ K VVN +L + E+ +L + E +D + +
Sbjct: 5 DFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQ-EELDGDVKSDLEQNV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ +++G++
Sbjct: 64 LDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQQGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKAKL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKAKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
++V+DG I PFIE+++
Sbjct: 304 TGKVDAVMDGEIGPFIESYL 323
>gi|420987725|ref|ZP_15450881.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0206]
gi|392182004|gb|EIV07655.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0206]
Length = 349
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 176/328 (53%), Gaps = 10/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + +V +L+ + + +++LR + ++ ++ +LAE E+ D + A
Sbjct: 25 NLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAE-ESEDNSVVAEADAER 83
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 84 VKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKYPV 143
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT +A+G LS E G H L+ F N S + + A V+V
Sbjct: 144 EVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFADVEV 202
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V E++
Sbjct: 203 LPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 261
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+A+LL ++ + + +K + + W + R YV PY++V+D++T
Sbjct: 262 QNKVAAMRVLQARLLERKRQEERAEMDALKGDGGSS-WGTQMRSYVLQPYQMVKDLRTEY 320
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +VLDG+I FIEA I R D
Sbjct: 321 EVGNPAAVLDGDIDGFIEAGIRWRNRRD 348
>gi|296134253|ref|YP_003641500.1| hypothetical protein TherJR_2767 [Thermincola potens JR]
gi|296032831|gb|ADG83599.1| hypothetical protein TherJR_2767 [Thermincola potens JR]
Length = 371
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 167/326 (51%), Gaps = 6/326 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P ++ +V+ ++ D + L+ + ++ + +L + + K R
Sbjct: 44 FWDNPVEAQKVMREINDLKDTIGLYNTLKRQYDDVYTLWELGMEDDDPDEIEKEVARDIR 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++Q E++ LL D A +++ AG+ G + W + LL MY RWA+++GY+
Sbjct: 104 HLRHNVEQAELTLLLGDKYDKGNAIISLHAGAGGTEAQDWVQMLLRMYTRWAEEKGYKID 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KSA+I E YA+GYL E G H L+ + S + A VDV+P
Sbjct: 164 TLDLLPGDEAGIKSASISIEGPYAYGYLKSEKGVHRLVRISPFDASGRRHTSFASVDVLP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ ++ I DL F S G+ + A I HIPTGI VQ ER+ +N
Sbjct: 224 -EVDDETEIVIDPADLRIDTFRSGGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHSN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
++KA+ L+A+LL + ++ ++ ++ E W + R YV HPY LV+D +TG++
Sbjct: 283 RLKAMKLLQARLLDLEIKKKEEELNKLRGEQQEIAWGSQIRSYVFHPYSLVKDHRTGVET 342
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
+ +V+DG I FI A++ SR D
Sbjct: 343 GNVQAVMDGEIDEFIAAYLKSRIKRD 368
>gi|451979627|ref|ZP_21928042.1| Peptide chain release factor 2 (RF-2) [Nitrospina gracilis 3/211]
gi|451763155|emb|CCQ89239.1| Peptide chain release factor 2 (RF-2) [Nitrospina gracilis 3/211]
Length = 301
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 145/265 (54%), Gaps = 6/265 (2%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + L + E+ +L G ND A + I +G+ G + WA+ LL MY+RW D+ GY+
Sbjct: 37 DLEQALTEAELKAMLSGDNDGNNALLNINSGAGGTESQDWAQMLLRMYLRWGDRNGYKSE 96
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT+ F +YA+GYL E G H L+ + + + A V V P
Sbjct: 97 VLDMQYGEEAGIKSATVNFVGDYAYGYLKAEIGVHRLVRISPYDANKRRHTSFASVFVFP 156
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
E D+++ D+DL ++ + G+ + A I H+PTGI VQ ER+ N
Sbjct: 157 EVAE-DIDVEVKDDDLKIDVYRASGPGGQGVNTTDSAVRITHMPTGIVVQCQNERSQHKN 215
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ LK++L I E+ +++ W + R YV HPY+LV+D++T +++
Sbjct: 216 KASAMKVLKSRLYEIELEKQEEEKRNLEKGKKKIEWGSQIRSYVLHPYQLVKDLRTQVEM 275
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSS 326
D SVLDG++ FIEA + + ++S
Sbjct: 276 GDVESVLDGDLNRFIEAFLMNEKAS 300
>gi|379058079|ref|ZP_09848605.1| peptide chain release factor 2 [Serinicoccus profundi MCCC 1A05965]
Length = 370
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 179/341 (52%), Gaps = 36/341 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI---AQLAEMEAI--------D 54
+LWDD + ++ KV +AL R KAE K++ A++ ++EA+ D
Sbjct: 43 DLWDD----------VDNAQKVTSALS--RAKAEHDKVVGMDARIDDLEALVELGREEND 90
Query: 55 YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
A R + K + E+ LL G D+ A VTI++G+ G+ +AE L+ MY
Sbjct: 91 ADTLVEAERELAGLKKAVQLLEVRTLLNGDYDIREAVVTIRSGAGGVDAADFAEMLMRMY 150
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
+RWA++ Y V+D + G+KSAT E + YAFG L+ E G H L+ +
Sbjct: 151 LRWAERHDYPTSVLDTSYAEEAGLKSATFEVKVPYAFGTLAVEAGTHRLVRISPFDNQGR 210
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + A V+VVPL +E++ ++I + DL +F S G+ + A + H+PTG
Sbjct: 211 RQTSFAAVEVVPL-IESTDTIEIPEGDLKIDVFRSSGPGGQSVNTTDSAVRMTHLPTGTV 269
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVS 286
V E++ N+ AL L+++LL++ + ++E ++ W + R YV
Sbjct: 270 VSMQNEKSQIQNRAAALRVLQSRLLLL----KKAEEDAARKEMAGDVKASWGDQMRSYVL 325
Query: 287 HPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
HPY++V+D++TG ++ +VLDG+I FI+A I +RS+D
Sbjct: 326 HPYQMVKDLRTGHEVGSTAAVLDGDIDDFIDAGIRWKRSAD 366
>gi|411005038|ref|ZP_11381367.1| peptide chain release factor 2 [Streptomyces globisporus C-1027]
Length = 368
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E A
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFELAEAEGDAD-AQAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHSYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 MGNPEAVFNGEIDGFVEAGIRWRKQRE 367
>gi|163783151|ref|ZP_02178145.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881485|gb|EDP74995.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
Length = 367
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 164/321 (51%), Gaps = 10/321 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +V+ K + VN+++ L + + ++Q E D SL
Sbjct: 43 FWDDQEKAKKVIQKRKWLEETVNSIETLEKSLRDVEELSQTTPEEDTDTWAILEEEMESL 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L + E+ L G D + A +TI+AG+ G WA+ L MY RWA+++GY
Sbjct: 103 EDK--LKELELKTYLSGEMDSKNAYLTIQAGAGGTEACDWADMLYRMYRRWAERKGYDVE 160
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
VVD G+KS T+ + YA+GYL GE G H L+ F + + H + A V V+
Sbjct: 161 VVDITPDDVAGIKSVTLLVKGPYAYGYLRGEQGVHRLVRISPFDSNARRH-TSFAAVSVM 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ ++++ DEDL F + G+ + A + HIPTGI V ER+ F
Sbjct: 220 PQ-IDEDINIEVRDEDLKIETFRASGAGGQYVNKTDTAVRLTHIPTGIVVSCQQERSQFQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KAL LKAKL + ++ + + E W + R YV HPY+LV+D++TG +
Sbjct: 279 NRRKALELLKAKLYQLEQQKLMEKRKQYEGEKTDIGWGHQIRSYVFHPYRLVKDLRTGYE 338
Query: 301 LPDFNSVLDGNIKPFIEAHIN 321
+ ++V+DG+I FIE +
Sbjct: 339 TGNVDAVMDGDIDQFIEGFLK 359
>gi|261338116|ref|ZP_05966000.1| peptide chain release factor 2 [Bifidobacterium gallicum DSM 20093]
gi|270276738|gb|EFA22592.1| peptide chain release factor 2 [Bifidobacterium gallicum DSM 20093]
Length = 376
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYR 63
LWDDP + +V KL+ V + LK L A + L E+ E D A
Sbjct: 44 GLWDDPEHAQKVTSKLS---AVQSQLKHLASAASRIDDVETLVELGREEADQDTLDEAQS 100
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ L E+ L+ G D A VTI++G+ G+ +A+ LL MY+RWA++ GY
Sbjct: 101 EVESITNDLRDMEIQTLMDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGY 160
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+
Sbjct: 161 KAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 220
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
VVPL T P+ +I + S P G+ + A I HIPTGI V ER+
Sbjct: 221 VVPLVEATDHIEVPESEIRVDTYCASGPG--GQGVNTTYSAVRITHIPTGIVVTMQDERS 278
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++T
Sbjct: 279 QIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G + +V DG+I FI+A I R
Sbjct: 338 GEETSQTQAVFDGDIDAFIQAGIRWR 363
>gi|336324934|ref|YP_004604900.1| peptide chain release factor RF-2 [Corynebacterium resistens DSM
45100]
gi|336100916|gb|AEI08736.1| peptide chain release factor RF-2 [Corynebacterium resistens DSM
45100]
Length = 378
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 174/337 (51%), Gaps = 25/337 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM----------EAIDY 55
+LWDDP + +V +L+ + +K LR + E+ ++ +AE EA++
Sbjct: 43 SLWDDPDHAQKVTSELSRVQGKLRKVKSLRQRLEDLPVMYDMAEEAAAEDPDTADEAMEM 102
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+RA ++ K ++ E++ +L G D A V I++G+ G+ WAE L+ MY
Sbjct: 103 ADEERA-----ELRKEIESLEVTTMLSGEYDQREAVVNIRSGAGGVDAADWAEMLMRMYT 157
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFP 172
RWA+K G++ + D + G+KSAT EY +G LS E GAH L+ F +G
Sbjct: 158 RWAEKSGHKVDIYDISYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRLSPFGSGGDK 217
Query: 173 HEATLACVDVVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGI 228
+ + A V+V+P+ +T PD ++ + S P G+ + A + HIPTGI
Sbjct: 218 RQTSFAEVEVLPVVEQTDHIDIPDAEVRVDVYRSSGPG--GQSVNTTDSAVRLTHIPTGI 275
Query: 229 AVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHP 288
V E++ NK A+ L+AKLL ++ + + + + W + R YV HP
Sbjct: 276 VVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHP 334
Query: 289 YKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
Y++V+D++T ++ D + VLDG++ F+EA I R S
Sbjct: 335 YQMVKDLRTNYEVNDPSKVLDGDLDGFLEAGIRWRMS 371
>gi|219849743|ref|YP_002464176.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485]
gi|254790911|sp|B8G607.1|RF2_CHLAD RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|219544002|gb|ACL25740.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485]
Length = 367
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 17/326 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME-----AIDYGLFKRA 61
LW+ P + E++ +L + V DL ++ + +LAE E A D RA
Sbjct: 44 LWNTPRVAQELMQRLTRLKEEVALWNDLDHRMTSLAELIELAEQEGDESLAADLAAELRA 103
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
V + + Q E+ LL GP D A ++I+AG G + WA LL MY RWA++
Sbjct: 104 ------VQREVAQRELEILLSGPYDDRDAFLSIQAGMGGTDAQDWAAMLLRMYTRWAERR 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY ++D + G+KSATIE YA+GY E G H LI N + + + A
Sbjct: 158 GYTVNLIDLSEGEEAGIKSATIEIRGPYAYGYARAEAGVHRLIRLSPFNAAHTRQTSFAR 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P ++ +P+++I EDL +F S G+ + A I H+PTGI V ER
Sbjct: 218 VEVMP-EVDDAPEVEIKPEDLRIDVFRSGGHGGQGVNTTDSAVRITHLPTGIVVTCQNER 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ AL L+A+LL ++ + ++ E + + R Y HP LV+D +
Sbjct: 277 SQIQNRETALRVLRARLLERELQRQAEERARLRGEYREAAFGNQMRTYYLHPSTLVKDHR 336
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINS 322
T + + +VLDG I PFIEA + +
Sbjct: 337 TDYETSNVQAVLDGEIDPFIEAFLRA 362
>gi|403746666|ref|ZP_10955059.1| hypothetical protein URH17368_2375 [Alicyclobacillus hesperidum
URH17-3-68]
gi|403120525|gb|EJY54897.1| hypothetical protein URH17368_2375 [Alicyclobacillus hesperidum
URH17-3-68]
Length = 340
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 160/320 (50%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD K+ +++ ++ VV+ + +L +A++ QLA+ E D LF A +
Sbjct: 5 NFWDDQEKAQKIIGEMNALKSVVDKMNELTSLHADAEVALQLAQEEN-DMDLFAEANEMA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D +E+ +L G D A V + G+ G + WA LL MY RWA+ GY+
Sbjct: 64 TKLKDGIDSFELQLMLSGDYDANNAIVELHPGAGGTESQDWASILLRMYTRWAEDHGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 124 EVLDYLPGDEAGIKSVTLRIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E ++I E+L + S G+ + A I H+PTGI V ER+
Sbjct: 184 PEIAEDDTSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHLPTGIVVSCQSERSQIQ 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKA+L E+ + ++ ++ E W + R YV HPY LV+D +T +
Sbjct: 244 NRAVAMELLKARLAAKRQEEREAELAELRGEQKEIAWGSQIRSYVFHPYSLVKDHRTNQE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + +V+DG + PFI A++
Sbjct: 304 VGNVQAVVDGLLDPFIHAYL 323
>gi|225350864|ref|ZP_03741887.1| hypothetical protein BIFPSEUDO_02438 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158320|gb|EEG71562.1| hypothetical protein BIFPSEUDO_02438 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 376
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 162/324 (50%), Gaps = 10/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V KL+ + L + ++ + + +L + E D A
Sbjct: 44 GLWDNPENAQKVTSKLSAVQSQLKRLASASQRIDDVETLVELGQEEE-DADTLAEAQSEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 ESIQNDLADMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
PL T PD +I + S P G+ + A I HIPTGI V ER+
Sbjct: 223 PLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVVTMQDERSQI 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG
Sbjct: 281 QNRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGY 339
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ +V DG+I FIEA I R
Sbjct: 340 ETSQTQAVFDGDIDAFIEAGIRWR 363
>gi|331695045|ref|YP_004331284.1| peptide chain release factor 2 [Pseudonocardia dioxanivorans
CB1190]
gi|326949734|gb|AEA23431.1| Peptide chain release factor 2 [Pseudonocardia dioxanivorans
CB1190]
Length = 369
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 173/324 (53%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +LA + + ++DLR + ++ ++ +LAE E D A R
Sbjct: 43 DLWNDTETAQKVTSRLAHANGELRRVEDLRRRLDDLPVLYELAEDEG-DESAIADADRDR 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + ++ E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ GY
Sbjct: 102 VALRAEIESLEVRTLLSGEYDEREALVTIRSEAGGVDAADFAEMLMRMYLRWAERHGYGV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V
Sbjct: 162 DVYDTSYAEEAGIKSATFQVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVA 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E++ + I ++DL ++ S G+ + A + HIPTGI V ER+
Sbjct: 222 PV-VESTDHIDIDEKDLRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + +K + W + R YV HPY++V+D++T +
Sbjct: 281 NKATAMVVLQAKLLERKRQEERALMDSLKDTG--SSWGNQMRSYVLHPYQMVKDLRTDFE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ + +VLDG+I FIEA I RR
Sbjct: 339 VGNPGAVLDGDIDGFIEAGIRWRR 362
>gi|169630559|ref|YP_001704208.1| peptide chain release factor 2 [Mycobacterium abscessus ATCC 19977]
gi|365871419|ref|ZP_09410960.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397680121|ref|YP_006521656.1| peptide chain release factor 2 [Mycobacterium massiliense str. GO
06]
gi|414582846|ref|ZP_11439986.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1215]
gi|418247354|ref|ZP_12873740.1| peptide chain release factor 2 [Mycobacterium abscessus 47J26]
gi|418421605|ref|ZP_12994778.1| peptide chain release factor 2 [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709229|ref|ZP_14236697.1| peptide chain release factor 2 [Mycobacterium abscessus M93]
gi|420864991|ref|ZP_15328380.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0303]
gi|420869781|ref|ZP_15333163.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RA]
gi|420874226|ref|ZP_15337602.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RB]
gi|420879297|ref|ZP_15342664.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0304]
gi|420886077|ref|ZP_15349437.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0421]
gi|420891332|ref|ZP_15354679.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0422]
gi|420896640|ref|ZP_15359979.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0708]
gi|420900397|ref|ZP_15363728.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0817]
gi|420906263|ref|ZP_15369581.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1212]
gi|420911108|ref|ZP_15374420.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-R]
gi|420917564|ref|ZP_15380867.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-S]
gi|420922727|ref|ZP_15386023.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-S]
gi|420928389|ref|ZP_15391669.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-1108]
gi|420932713|ref|ZP_15395988.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-151-0930]
gi|420936046|ref|ZP_15399315.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-152-0914]
gi|420942974|ref|ZP_15406230.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-153-0915]
gi|420948665|ref|ZP_15411915.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-154-0310]
gi|420953138|ref|ZP_15416380.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0626]
gi|420957312|ref|ZP_15420547.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0107]
gi|420962979|ref|ZP_15426203.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-1231]
gi|420967996|ref|ZP_15431200.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0810-R]
gi|420974564|ref|ZP_15437755.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0921]
gi|420978729|ref|ZP_15441906.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0212]
gi|420984113|ref|ZP_15447280.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-R]
gi|420993260|ref|ZP_15456406.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0307]
gi|420999033|ref|ZP_15462168.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-R]
gi|421003556|ref|ZP_15466678.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-S]
gi|421008640|ref|ZP_15471750.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0119-R]
gi|421014162|ref|ZP_15477239.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-R]
gi|421019027|ref|ZP_15482084.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-S]
gi|421025197|ref|ZP_15488241.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0731]
gi|421029899|ref|ZP_15492930.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-R]
gi|421035741|ref|ZP_15498759.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-S]
gi|421040259|ref|ZP_15503267.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-R]
gi|421044579|ref|ZP_15507579.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-S]
gi|421050503|ref|ZP_15513497.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|238688912|sp|B1MEU8.1|RF2_MYCA9 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|169242526|emb|CAM63554.1| Peptide chain release factor 2 (PrfB) [Mycobacterium abscessus]
gi|353451847|gb|EHC00241.1| peptide chain release factor 2 [Mycobacterium abscessus 47J26]
gi|363995222|gb|EHM16440.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363995521|gb|EHM16738.1| peptide chain release factor 2 [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943110|gb|EIC67424.1| peptide chain release factor 2 [Mycobacterium abscessus M93]
gi|392063707|gb|EIT89556.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0303]
gi|392065701|gb|EIT91549.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RB]
gi|392069251|gb|EIT95098.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RA]
gi|392078592|gb|EIU04419.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0422]
gi|392081840|gb|EIU07666.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0421]
gi|392084206|gb|EIU10031.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0304]
gi|392095952|gb|EIU21747.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0708]
gi|392097758|gb|EIU23552.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0817]
gi|392104167|gb|EIU29953.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1212]
gi|392110455|gb|EIU36225.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-S]
gi|392113102|gb|EIU38871.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-R]
gi|392117998|gb|EIU43766.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1215]
gi|392127380|gb|EIU53130.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-S]
gi|392129507|gb|EIU55254.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-1108]
gi|392137472|gb|EIU63209.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-151-0930]
gi|392141561|gb|EIU67286.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-152-0914]
gi|392148071|gb|EIU73789.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-153-0915]
gi|392152051|gb|EIU77758.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0626]
gi|392155695|gb|EIU81401.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-154-0310]
gi|392162447|gb|EIU88137.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0921]
gi|392163007|gb|EIU88696.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0212]
gi|392169109|gb|EIU94787.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-R]
gi|392177815|gb|EIV03468.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-R]
gi|392179362|gb|EIV05014.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0307]
gi|392192259|gb|EIV17883.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-S]
gi|392196788|gb|EIV22404.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0119-R]
gi|392199851|gb|EIV25459.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-R]
gi|392207657|gb|EIV33234.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-S]
gi|392211994|gb|EIV37560.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0731]
gi|392221187|gb|EIV46710.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-R]
gi|392223119|gb|EIV48641.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-R]
gi|392224236|gb|EIV49757.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-S]
gi|392234032|gb|EIV59530.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-S]
gi|392239106|gb|EIV64599.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898]
gi|392245892|gb|EIV71369.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-1231]
gi|392250503|gb|EIV75977.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0810-R]
gi|392251143|gb|EIV76616.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0107]
gi|395458386|gb|AFN64049.1| Peptide chain release factor 2 [Mycobacterium massiliense str. GO
06]
Length = 367
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 176/328 (53%), Gaps = 10/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + +V +L+ + + +++LR + ++ ++ +LAE E+ D + A
Sbjct: 43 NLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAE-ESEDNSVVAEADAER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 102 VKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT +A+G LS E G H L+ F N S + + A V+V
Sbjct: 162 EVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFADVEV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V E++
Sbjct: 221 LPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+A+LL ++ + + +K + + W + R YV PY++V+D++T
Sbjct: 280 QNKVAAMRVLQARLLERKRQEERAEMDALKGDGGSS-WGTQMRSYVLQPYQMVKDLRTEY 338
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +VLDG+I FIEA I R D
Sbjct: 339 EVGNPAAVLDGDIDGFIEAGIRWRNRRD 366
>gi|242372989|ref|ZP_04818563.1| peptide chain release factor 2 [Staphylococcus epidermidis
M23864:W1]
gi|242349315|gb|EES40916.1| peptide chain release factor 2 [Staphylococcus epidermidis
M23864:W1]
Length = 386
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 162/325 (49%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WDD K+ +++ K +VN DL + E+ +L + E D +
Sbjct: 54 MMADPGFWDDQNKAQDIIDKNNALKSIVNGYHDLANEVEDMSATRELLQ-EEYDEDMKAE 112
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 113 LEEEVIQFKEKMDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 172
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 173 KGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 232
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 233 SCDVIPDFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 292
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 293 RSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 352
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG I+PFIEA++
Sbjct: 353 RTNEETGKVDAVMDGEIEPFIEAYL 377
>gi|160893549|ref|ZP_02074333.1| hypothetical protein CLOL250_01103 [Clostridium sp. L2-50]
gi|156864534|gb|EDO57965.1| peptide chain release factor 2 [Clostridium sp. L2-50]
Length = 329
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 162/322 (50%), Gaps = 13/322 (4%)
Query: 7 LWDDPTKSNEV---LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD KS V L KL DSL+ + L + + + Q+AE E D + +
Sbjct: 6 FWDDVAKSTSVSRQLKKLQDSLE---EYQKLEQDFSDIETLIQMAEEEG-DSSMIEEIGE 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
K + Y +S LL G D A +T+ AG+ G W L MY RWA+K G+
Sbjct: 62 MLTAFQKEFENYRISLLLSGEFDGYDAVMTLHAGAGGTESCDWTSMLYRMYTRWAEKHGF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ V+D G+KS TI+ + A+GYL E G H L+ N + + + A D
Sbjct: 122 KVEVLDYLEGDEAGIKSVTIQISGQNAYGYLKSEKGVHRLVRISPFNAAGKRQTSFASCD 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P +E ++ I+++DL + S G+ + A I HIPTGI VQ ER+
Sbjct: 182 VIPE-IEEDLEVDINEDDLRIDTYRSSGAGGQHINKTSSAVRITHIPTGIVVQCQNERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK KA+ LK+KL +I ++ + +S I+ E + N + + R YV PY +V+D +TG
Sbjct: 241 HMNKDKAMQMLKSKLYLIKKQENLDKISDIRGEILENGFGSQIRSYVMQPYTMVKDHRTG 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
+ + +VLDG + F+ A++
Sbjct: 301 EESGNVAAVLDGELDGFMNAYL 322
>gi|227497420|ref|ZP_03927652.1| peptide chain release factor RF2 [Actinomyces urogenitalis DSM
15434]
gi|226833096|gb|EEH65479.1| peptide chain release factor RF2 [Actinomyces urogenitalis DSM
15434]
Length = 374
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 177/332 (53%), Gaps = 15/332 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++DL + ++ + + ++A E D L A
Sbjct: 43 DLWDDPDAAQVVTSNLSHAQADLKRVEDLGSRIDDLEAMVEMAGEEEGDDAAELLAEAES 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 DLASISKDLSELEIRTLLSGEYDQRDAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 ATKVLDTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E++ +++ + D+ +F S G+ + A I H+PTG+ V E++
Sbjct: 223 VIPL-IESTDHIEVPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSMQDEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D+
Sbjct: 282 IQNRAAAMRVLQSRLLLLKQQEE----DAKKKELAGDVKASWGDQMRSYVLNPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T ++ + +SV DG+I FI+A I R+ +
Sbjct: 338 RTSYEVGNPDSVFDGDIDGFIDAGIRWRKQQE 369
>gi|302865524|ref|YP_003834161.1| peptide chain release factor 2 [Micromonospora aurantiaca ATCC
27029]
gi|315502072|ref|YP_004080959.1| peptide chain release factor 2 [Micromonospora sp. L5]
gi|302568383|gb|ADL44585.1| peptide chain release factor 2 [Micromonospora aurantiaca ATCC
27029]
gi|315408691|gb|ADU06808.1| peptide chain release factor 2 [Micromonospora sp. L5]
Length = 373
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 172/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V +L+ + L DLR + ++A ++ +LA+ E D G
Sbjct: 44 DLWDDQAKAQQVTSQLSYVNGEITKLGDLRSRLDDAGVLLELAQAED-DPGALTEVESEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLTKAIQEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ E + + I + ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 223 PV-TEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+A+LL ++ ++ +K + + W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMRVLQARLLERKRQEEEEKLAGLKTGS-TSSWGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ +SV DG++ FIEA I R+
Sbjct: 341 TGNPSSVFDGDLDSFIEAGIRWRK 364
>gi|443627028|ref|ZP_21111430.1| putative Peptide chain release factor 2 [Streptomyces
viridochromogenes Tue57]
gi|443339445|gb|ELS53685.1| putative Peptide chain release factor 2 [Streptomyces
viridochromogenes Tue57]
Length = 368
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRSRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAERLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S ++I + DL ++ S G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VEQSDHVEIDESDLRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|379008496|ref|YP_005257947.1| peptide chain release factor 2 [Sulfobacillus acidophilus DSM
10332]
gi|361054758|gb|AEW06275.1| peptide chain release factor 2 [Sulfobacillus acidophilus DSM
10332]
Length = 376
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 168/322 (52%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP ++ + +L + + L + +E + +LA E D L ++ + +
Sbjct: 44 DFWNDPKRAERITRQLHIVTGPLTEYETLVRRFQEWQEFVELANAEG-DQDLLRQQLKEA 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L E+ +LRGP D E A +T+ +G+ G + W + LL MY+RWA++ G+R
Sbjct: 103 EQLAAALRHLELELILRGPYDHEDAILTLHSGAGGTEAQDWVQMLLRMYLRWAERRGFRT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D+ + G+KS T+E E AFG+L E G H L+ + S + A V+VV
Sbjct: 163 QIIDQLPGEEAGLKSVTVEVHGENAFGFLRPERGVHRLVRISPFDASGRRHTSFASVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E+ ++I E+L F + G+ + + A I H+PTGI V ER+ A
Sbjct: 223 P-DIESDEAVEIRPEELRIDTFRASGAGGQHINKTESAVRITHLPTGIVVTCQSERSQHA 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+ KL + + ++ ++ W + R YV PY +V+D +T +
Sbjct: 282 NRETAMRLLRGKLAELKEREWEQKMAEMRGAQAEIGWGSQIRSYVFQPYTVVRDHRTRFE 341
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
+ + ++V+DG I FIEA++ +
Sbjct: 342 MGNVDAVMDGEIDGFIEAYLQA 363
>gi|451817487|ref|YP_007453688.1| peptide chain release factor 2 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783466|gb|AGF54434.1| peptide chain release factor 2 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 323
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 156/321 (48%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ EV K + LR K E+ +++ ++ ME D ++
Sbjct: 6 FWDDIKRAEEVTKKSKSIKDQIEKFDKLRSKVEDVEVLKEI--MEDDDEESANEIIQSIR 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+V +D Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 EVEAEIDDYNMKILLCGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSVE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 124 TIDLLPGDEAGIKSVTLKITGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFASMEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L D++I +DL + S G+ + A I H+PTGI VQ ER+ FAN
Sbjct: 184 -ELTKEQDIEIKADDLRIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQCQNERSQFAN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + + W + R YV HPY +V+D +T ++
Sbjct: 243 RDTAMEMLKSKLVELKERAHKEKIEDLTGDLKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ +V+DG+I FI A++ +
Sbjct: 303 SNVTAVMDGDIDMFINAYLKN 323
>gi|429767404|ref|ZP_19299603.1| peptide chain release factor 2 [Clostridium celatum DSM 1785]
gi|429181012|gb|EKY22207.1| peptide chain release factor 2 [Clostridium celatum DSM 1785]
Length = 325
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 161/321 (50%), Gaps = 9/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ +V + ++ + L + ++ +++A+LAE D
Sbjct: 6 FWDDIKRAEDVTKESKRIKDKIDRYESLVTRLDDVEVLAELAED---DEETINEVIVEIR 62
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ KL+D+Y++ LL G D A + + AG G W LL MY RW +K+GY+
Sbjct: 63 DIEKLIDEYKIELLLSGEYDKNDAILNLHAGVGGSDANDWTLMLLRMYTRWCEKKGYKVE 122
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KSAT+ + E+A+GYL E G H L+ N + + + A ++V+P
Sbjct: 123 TLDLLEGDEAGIKSATLRVKGEFAYGYLKAEKGVHRLVRISPFNANGKRQTSFASIEVLP 182
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L D++I EDL + + G+ + + A I HIPTGI VQ ER+ FAN
Sbjct: 183 -ELTKDQDIEIRQEDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNERSQFAN 241
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A++ LK+KL+ + + + E W + R YV HPY +V+D +T +
Sbjct: 242 KDTAMSMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNMVKDHRTNEET 301
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N+V++G I FI ++ S
Sbjct: 302 SNVNAVMNGEIDAFITTYLKS 322
>gi|339627122|ref|YP_004718765.1| peptide chain release factor 2 [Sulfobacillus acidophilus TPY]
gi|339284911|gb|AEJ39022.1| peptide chain release factor 2 [Sulfobacillus acidophilus TPY]
Length = 337
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 168/322 (52%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP ++ + +L + + L + +E + +LA E D L ++ + +
Sbjct: 5 DFWNDPKRAERITRQLHIVTGPLTEYETLVRRFQEWQEFVELANAEG-DQDLLRQQLKEA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L E+ +LRGP D E A +T+ +G+ G + W + LL MY+RWA++ G+R
Sbjct: 64 EQLAAALRHLELELILRGPYDHEDAILTLHSGAGGTEAQDWVQMLLRMYLRWAERRGFRT 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D+ + G+KS T+E E AFG+L E G H L+ + S + A V+VV
Sbjct: 124 QIIDQLPGEEAGLKSVTVEVHGENAFGFLRPERGVHRLVRISPFDASGRRHTSFASVEVV 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E+ ++I E+L F + G+ + + A I H+PTGI V ER+ A
Sbjct: 184 P-DIESDEAVEIRPEELRIDTFRASGAGGQHINKTESAVRITHLPTGIVVTCQSERSQHA 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+ KL + + ++ ++ W + R YV PY +V+D +T +
Sbjct: 243 NRETAMRLLRGKLAELKEREWEQKMAEMRGAQAEIGWGSQIRSYVFQPYTVVRDHRTRFE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
+ + ++V+DG I FIEA++ +
Sbjct: 303 MGNVDAVMDGEIDGFIEAYLQA 324
>gi|15644327|ref|NP_229379.1| peptide chain release factor 2 [Thermotoga maritima MSB8]
gi|7388057|sp|Q9X1R5.1|RF2_THEMA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|4982148|gb|AAD36646.1|AE001802_15 peptide chain release factor RF-2 [Thermotoga maritima MSB8]
Length = 369
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 172/328 (52%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 46 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 103 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 163 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 223 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL LKAKL + E+ + I+ E W + R Y+ HPY +V+D +TG++
Sbjct: 282 NKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVE 341
Query: 301 LPDFNSVLDGNIKPFIEAHI--NSRRSS 326
+ ++V+DG+I FIEA + +RRSS
Sbjct: 342 TANVDAVMDGDIDMFIEAELVYFARRSS 369
>gi|452821121|gb|EME28155.1| peptide chain release factor RF-2 [Galdieria sulphuraria]
Length = 419
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 174/322 (54%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-DYGLFKRAYRA 64
+ W++ T++ +VL L+ + + ++ + QL E D L + A +
Sbjct: 86 SFWENKTQAEKVLKDLSSKRYKLEKFSSWEQRLQDLQAYLQLQSTEGEPDSSLLEEATQH 145
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ + K L+++E L G DV A +TI AG+ G + WA LL MY RW +++ +
Sbjct: 146 IVQLKKELNRWETQHLFSGRYDVNAAMLTITAGAGGTDAQDWASLLLRMYTRWCERQDFS 205
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
VVD + GVKSA ++ + EYA+GYL GE GAH L+ N + + + A VDV
Sbjct: 206 FTVVDIADGEEAGVKSAYLQIQNEYAYGYLQGEKGAHRLVRLSPFNANNKRQTSFAGVDV 265
Query: 183 VPLFLETSPDLQ-ISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNH 238
+PL E + I EDL+ ++ G+ Q++ K A I HIP+GI V+S ER+
Sbjct: 266 IPLLQEEELETLIIPPEDLVVTTMRAGGKGGQNVNKVETAVRIHHIPSGIQVRSAKERSQ 325
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ NK A+ L++KLL++ E+ + ++ + + W + R YV HPYK+V+D++T
Sbjct: 326 YQNKQIAMQLLRSKLLLLEKERMERVRNEVRGDVVEAEWGNQIRNYVFHPYKVVKDLRTN 385
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ D SVLDG++ FI A +
Sbjct: 386 VEKGDVESVLDGDLDDFIHAFL 407
>gi|430742122|ref|YP_007201251.1| peptide chain release factor 2 [Singulisphaera acidiphila DSM
18658]
gi|430013842|gb|AGA25556.1| peptide chain release factor 2 [Singulisphaera acidiphila DSM
18658]
Length = 370
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 177/323 (54%), Gaps = 13/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA---IDYGLFKRAY 62
+ W+D K+ V+++L V+ ++L ++++ + + +LAE + D + A
Sbjct: 41 SFWNDQEKAKGVILELQTLNAVLKPFEELGRESDDLEALIELAEEDGGDDFDEEIRSGAK 100
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+A LD + +E+ +L GPND A VTI AG+ G WAE +L MY+ WA+ +
Sbjct: 101 KALLD----FENFELRSMLSGPNDHCNAFVTIHAGAGGTEACDWAEMILRMYLMWAESKK 156
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
+ ++ D+ G++ ATI + EYA+GYL ETG H L+ + + + + A V
Sbjct: 157 FSAQITDREDGGAAGIQVATIHIKGEYAYGYLKCETGVHRLVRISPYDSAGRRQTSFASV 216
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
D++P ++ + D+ + D++L +F S G+ Q+ + H+PTG+A +S ER+
Sbjct: 217 DILPE-VDDTIDIVLRDDELKRDVFRSGGPGGQHQNKTESGVRYTHLPTGVAAESRSERS 275
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N AL +LKAKL+ + E+ ++ + E + + R YV PY+LV+D++T
Sbjct: 276 QHKNDANALAQLKAKLVRLEEEKREADFAKKYDEKGEISFGSQIRSYVLQPYQLVKDLRT 335
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
++ + SVLDGNI FIEA++
Sbjct: 336 SHEVGNPRSVLDGNIDGFIEAYL 358
>gi|345000024|ref|YP_004802878.1| peptide chain release factor 2 [Streptomyces sp. SirexAA-E]
gi|344315650|gb|AEN10338.1| peptide chain release factor 2 [Streptomyces sp. SirexAA-E]
Length = 352
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ V + LR + ++ ++ +LAE E A
Sbjct: 28 SLWDDPEAAQKITSRLSHLQAEVRKTEALRGRIDDLGVLFELAEDEGDAD-ALAEAEAEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 87 VSVRKALDEMEVRTLLSGEYDAREAVVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 EIYETSYAEEAGIKSTTFTVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 207 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 265
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 266 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 324
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I FIEA I R+ ++
Sbjct: 325 IGNPEAVFNGEIDGFIEAGIRWRKQNE 351
>gi|83589099|ref|YP_429108.1| peptide chain release factor 2 [Moorella thermoacetica ATCC 39073]
gi|83572013|gb|ABC18565.1| bacterial peptide chain release factor 2 (bRF-2) [Moorella
thermoacetica ATCC 39073]
Length = 330
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 169/324 (52%), Gaps = 7/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+D ++ V +L + + ++L K + + + QLA E D+ L + R
Sbjct: 5 GFWEDRARAEAVGKRLTYLKEKLARYRELESKCADVRELWQLALAED-DHSLEEEIARDL 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V ++ ++ LL GP D A +++ G+ G + WA LL MY RW + GY+
Sbjct: 64 AAVEGKVEGQLLATLLNGPYDRHNAILSLHPGAGGTESQDWAAMLLRMYNRWCEDRGYQV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSATI + E A+GYL E G H L+ + + + A VDV+
Sbjct: 124 ELLDYLEGEEAGLKSATILVKGENAYGYLQAEKGVHRLVRISPFDAAGRRHTSFASVDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E +++I+ +DL F S G+ + A I H+PTGI V ER+ A
Sbjct: 184 P-EVEADEEVEINPDDLKIDTFRSQGAGGQHVNKTDSAVRITHLPTGIVVTCQNERSQHA 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N++ A+ L+A+L + ++ + ++ I+ E W + R YV HPY LV+D +TG++
Sbjct: 243 NRLSAMKILQARLAALKRQEQEAELAQIRGEQREIAWGSQIRSYVFHPYSLVKDHRTGVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ +V+DG I PFI+A+++ +R
Sbjct: 303 TGNIQAVMDGQIDPFIQAYLHWQR 326
>gi|348170778|ref|ZP_08877672.1| putative peptide chain release factor 2 [Saccharopolyspora spinosa
NRRL 18395]
Length = 368
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 169/324 (52%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L + + +LR + E+ +++ +L+E E GL + A
Sbjct: 43 DLWDDVEHAQRVSSQLVHRQAELRKITELRQRLEDLEVLYELSEDEGDSAGLSE-ADEER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ E+ LL G D A VTI+A + G+ +AE L+ MY+RWA++ Y
Sbjct: 102 DRLKKDLEALEVRTLLSGEYDQREAMVTIRAEAGGVDAADFAEMLMRMYLRWAERHSYPA 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I ++D+ +F S G+ + A I HIPTGI V E++
Sbjct: 222 PVVEETD-HVDIPEKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVVSCQNEKSQLQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L++KLL E+ + + +K + W + R YV HPY++V+D++T +
Sbjct: 281 NKAAAMRVLQSKLLARKKEEERAELDALKDSG--SSWGNQMRSYVLHPYQMVKDLRTEHE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ + ++VLDG+I F+EA I RR
Sbjct: 339 VGNPDAVLDGDIDGFLEAGIRWRR 362
>gi|357590811|ref|ZP_09129477.1| peptide chain release factor 2 [Corynebacterium nuruki S6-4]
Length = 374
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 170/325 (52%), Gaps = 9/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+LWDDP + +V KL+ + ++ LR + ++ ++ ++AE E D K A
Sbjct: 43 SLWDDPDHAQQVTSKLSHVQGRLKKVRGLRSRLDDLPVMYEMAEESEGEDAAEAKELADA 102
Query: 65 SL-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L ++ + +D E++ +L G D A V I++ + G+ WAE L+ MY RWA+K G+
Sbjct: 103 ELAELKEAVDSLEVTTMLSGEYDDREAVVNIRSAAGGVDAADWAEMLMRMYTRWAEKHGH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ V D + G+KSAT +Y +G LS E G H L+ + + + A V+
Sbjct: 163 KVEVYDISYAEEAGIKSATFVVHGDYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E S + I + ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 223 VLPV-VEQSDHVDIDENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L AKLL ++ + + ++ + N W + R YV HPY++V+D++T
Sbjct: 282 IQNKASAMRVLAAKLLERKRQEEAAEMDALRGDG-SNSWGNQMRSYVLHPYQMVKDLRTN 340
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D VLDG+I F+EA I R
Sbjct: 341 YEVNDPQKVLDGDIDGFLEAGIRWR 365
>gi|168215798|ref|ZP_02641423.1| peptide chain release factor 2 [Clostridium perfringens NCTC 8239]
gi|182382266|gb|EDT79745.1| peptide chain release factor 2 [Clostridium perfringens NCTC 8239]
Length = 323
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 161/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D +
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAQEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T +
Sbjct: 243 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNFET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 303 SNVNGVMDGDIDNFIIAYLNS 323
>gi|315606122|ref|ZP_07881153.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 180
str. F0310]
gi|315312404|gb|EFU60490.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 180
str. F0310]
Length = 372
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 177/331 (53%), Gaps = 18/331 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + EV L+ ++ + + + ++ + + ++A E D G A A
Sbjct: 43 DLWDDPSAAQEVTSALSHRQSELDRITQMSERIDDLEAMVEMA-AEDPDEGAEILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 GDLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 221 EVIPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKS 279
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ AL L+++LLV+ E+ + K+E ++ W + R YV PY++V+D
Sbjct: 280 QIQNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQPYQMVKD 335
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
++T + + SV DG+I FI A I R++
Sbjct: 336 LRTEFESGNPQSVFDGDIDGFINAGIRWRKN 366
>gi|220913146|ref|YP_002488455.1| peptide chain release factor 2 [Arthrobacter chlorophenolicus A6]
gi|254790908|sp|B8HBH8.1|RF2_ARTCA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|219860024|gb|ACL40366.1| peptide chain release factor 2 [Arthrobacter chlorophenolicus A6]
Length = 371
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 169/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPAAAQKITSRLSHRQSELERLTTLASRIDDLEVLVELGQDEG-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 ESIQKALKNLEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D ++ +F S G+ + A + HIPTG+ V E++
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGVVVSMQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + + W + R YV +PY++V+D++T +
Sbjct: 282 NRAAAMRVLQSRLLLLKKEQEDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++V DG I FI+A I R
Sbjct: 341 VGNTSAVFDGEIDDFIDAGIRWR 363
>gi|170289031|ref|YP_001739269.1| peptide chain release factor 2 [Thermotoga sp. RQ2]
gi|281412649|ref|YP_003346728.1| peptide chain release factor 2 [Thermotoga naphthophila RKU-10]
gi|418045638|ref|ZP_12683733.1| peptide chain release factor 2 [Thermotoga maritima MSB8]
gi|238688848|sp|B1LB88.1|RF2_THESQ RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|170176534|gb|ACB09586.1| peptide chain release factor 2 [Thermotoga sp. RQ2]
gi|281373752|gb|ADA67314.1| peptide chain release factor 2 [Thermotoga naphthophila RKU-10]
gi|351676523|gb|EHA59676.1| peptide chain release factor 2 [Thermotoga maritima MSB8]
Length = 367
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 172/328 (52%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL LKAKL + E+ + I+ E W + R Y+ HPY +V+D +TG++
Sbjct: 280 NKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVE 339
Query: 301 LPDFNSVLDGNIKPFIEAHI--NSRRSS 326
+ ++V+DG+I FIEA + +RRSS
Sbjct: 340 TANVDAVMDGDIDMFIEAELVYFARRSS 367
>gi|227505562|ref|ZP_03935611.1| peptide chain release factor 2 [Corynebacterium striatum ATCC 6940]
gi|227197859|gb|EEI77907.1| peptide chain release factor 2 [Corynebacterium striatum ATCC 6940]
Length = 370
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 169/323 (52%), Gaps = 11/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V L+ + + L+ LR + ++ ++ +LAE E D L
Sbjct: 43 SLWDDPAHAQQVTSALSAAQAKIRKLESLRSRVDDMPVMFELAEEEG-DTALADDELE-- 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 -DLGAAIEALEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + + D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 PV-VEQTDHIDVPDGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 278 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 336
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D + VLDG++ F+EA I R
Sbjct: 337 VGDPSKVLDGDLDGFLEAGIRWR 359
>gi|291453772|ref|ZP_06593162.1| peptide chain release factor 2 [Streptomyces albus J1074]
gi|359149446|ref|ZP_09182456.1| peptide chain release factor 2 [Streptomyces sp. S4]
gi|421740172|ref|ZP_16178444.1| bacterial peptide chain release factor 2 (bRF-2) [Streptomyces sp.
SM8]
gi|291356721|gb|EFE83623.1| peptide chain release factor 2 [Streptomyces albus J1074]
gi|406691412|gb|EKC95161.1| bacterial peptide chain release factor 2 (bRF-2) [Streptomyces sp.
SM8]
Length = 371
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTEALRSRLDDLGVLFELAEAED-DADTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ASVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEEE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 MGNPEAVFNGEIDGFLEAGIRWRKQRE 367
>gi|325963891|ref|YP_004241797.1| peptide chain release factor 2 (bRF-2) [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469978|gb|ADX73663.1| bacterial peptide chain release factor 2 (bRF-2) [Arthrobacter
phenanthrenivorans Sphe3]
Length = 371
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 172/323 (53%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + ++ +L+ + L +L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPSAAQKITSRLSHRQSELERLNNLASRIDDLEVLVELGQDED-DAASMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 ESIKKALKELEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D ++ +F S G+ + A + HIPTG V E++
Sbjct: 223 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVVSMQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + + W + R YV +PY++V+D++T +
Sbjct: 282 NRAAAMRVLQSRLLLLKKEQEDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++V DG I FI+A I R
Sbjct: 341 VGNTSAVFDGEIDDFIDAGIRWR 363
>gi|29831645|ref|NP_826279.1| peptide chain release factor 2 [Streptomyces avermitilis MA-4680]
gi|81717933|sp|Q82D82.1|RF2_STRAW RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|29608761|dbj|BAC72814.1| putative peptide chain release factor 2 [Streptomyces avermitilis
MA-4680]
Length = 368
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +ET+ ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VETTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLDRRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I+ F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIEGFLEAGIRWRKQQE 367
>gi|403508387|ref|YP_006640025.1| peptide chain release factor 2 [Nocardiopsis alba ATCC BAA-2165]
gi|402801847|gb|AFR09257.1| peptide chain release factor 2 [Nocardiopsis alba ATCC BAA-2165]
Length = 370
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 174/328 (53%), Gaps = 8/328 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW D + +V +L+ +VN + + + ++ ++ +LAE E D A R
Sbjct: 45 LWADQDNAQKVTRRLSTLESMVNKVGGIGRRLDDLGVLYELAEAED-DPDTRAEADRELE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + + E+ LL GP+D A VTI + + G+ WA+ L MY+RWA++ G+
Sbjct: 104 QLRKEIGELEVRTLLNGPHDEREAIVTINSQAGGVDAADWAQMLQRMYLRWAERHGHPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + + G+KS + + +A+G L GE G H L+ + + + A VDVVP
Sbjct: 164 IYETSYAEEAGIKSTSFAVKSAFAYGTLRGEHGTHRLVRISPFDNQNRRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +E S ++I + +L ++ S G+ + A I H+PTGI V ER+ N
Sbjct: 224 M-VEQSDHIEIDETELRVDVYRSSGPGGQGVNTTDSAVRITHMPTGIVVSCQNERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A++ L+AKLL ++ + + ++ ++ V+ W + R YV HPY+ V+DV+TG++
Sbjct: 283 KATAMSMLQAKLLARKRQEEQAALDELRGDS-VSSWGTQMRNYVLHPYQSVKDVRTGMET 341
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + VLDG+I FI+A I RS + +
Sbjct: 342 GNTSGVLDGDIDGFIDAEIRWMRSRENN 369
>gi|345854356|ref|ZP_08807192.1| peptide chain release factor 2 [Streptomyces zinciresistens K42]
gi|345634189|gb|EGX55860.1| peptide chain release factor 2 [Streptomyces zinciresistens K42]
Length = 368
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKTEALRGRIDDLAVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQARMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I+ F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIEGFLEAGIRWRKQQE 367
>gi|110802702|ref|YP_699445.1| peptide chain release factor 2 [Clostridium perfringens SM101]
gi|123145940|sp|Q0SR12.1|RF2_CLOPS RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 364
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 161/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 47 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 ALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 165 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 225 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 284 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 343
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+ G+I FI A++NS
Sbjct: 344 SNVNGVMGGDIDNFIIAYLNS 364
>gi|238063024|ref|ZP_04607733.1| peptide chain release factor 2 [Micromonospora sp. ATCC 39149]
gi|237884835|gb|EEP73663.1| peptide chain release factor 2 [Micromonospora sp. ATCC 39149]
Length = 373
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 173/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V +L+ ++ L LR + ++A+++ +LAE E D G+
Sbjct: 44 DLWDDQAKAQQVTSQLSYVNGEIDKLGSLRSRLDDARVLLELAEAED-DPGVLAEVETEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 GALTKSIQDMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFAVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ E + + I + ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 223 PV-TEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ + ++ +K +A W + R YV HPY++V+D++T +
Sbjct: 282 NKASALRVLQARLLERKRQEEQAKLNGLKTDA-AGSWGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ ++V DG + FIEA I R+
Sbjct: 341 TGNPSAVFDGELDSFIEAGIRWRK 364
>gi|182438348|ref|YP_001826067.1| peptide chain release factor 2 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778999|ref|ZP_08238264.1| Peptide chain release factor 2 [Streptomyces griseus XylebKG-1]
gi|238688991|sp|B1VV08.1|RF2_STRGG RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|178466864|dbj|BAG21384.1| putative peptide chain release factor 2 [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326659332|gb|EGE44178.1| Peptide chain release factor 2 [Streptomyces griseus XylebKG-1]
Length = 368
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LA E A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLEVLFELAADEGDAD-AQAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVRKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ S+
Sbjct: 341 MGNPEAVFNGEIDGFVEAGIRWRKQSE 367
>gi|255926563|gb|ABG86573.2| peptide chain release factor 2 [Clostridium perfringens SM101]
Length = 364
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 161/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 47 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 ALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 165 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 225 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 284 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 343
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+ G+I FI A++NS
Sbjct: 344 SNVNGVMGGDIDNFIIAYLNS 364
>gi|444305081|ref|ZP_21140868.1| peptide chain release factor 2 [Arthrobacter sp. SJCon]
gi|443482616|gb|ELT45524.1| peptide chain release factor 2 [Arthrobacter sp. SJCon]
Length = 371
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 170/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPAAAQKITSRLSHRQSELERLTSLESRIDDLEVLVELGQDED-DADSMGEAATEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E+ LL G D A V+I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 ESIRKALKELEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D ++ +F S G+ + A + HIPTG V E++
Sbjct: 223 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVVSMQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + + W + R YV +PY++V+D++T +
Sbjct: 282 NRAAAMRVLQSRLLLLKKEQEDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++V DG I FI+A I R
Sbjct: 341 VGNTSAVFDGEIDDFIDAGIRWR 363
>gi|379734499|ref|YP_005328005.1| peptide chain release factor 2 [Blastococcus saxobsidens DD2]
gi|378782306|emb|CCG01966.1| Peptide chain release factor 2 [Blastococcus saxobsidens DD2]
Length = 370
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 173/327 (52%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + + KL+ + +++LR + E+ L+ ++A E D A R
Sbjct: 43 DLWDDVEAAQALTSKLSYMQGDLRRVEELRGRLEDVGLLHEMA-AEENDEATTAEAEREL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K++ + E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ Y
Sbjct: 102 ENLQKVIAELEVRTLLSGEYDSREALVTIRSEAGGVDAADFAEMLMRMYLRWAERHKYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDVSYAEEAGIKSATFTVKVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 222 PV-VEQTDHVEIPENEIRVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSCQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL L+A+LLV+ ++ + + +K E + W + R YV HPY++V+D++T +
Sbjct: 281 NRAAALRVLQARLLVVRQQEQKAEMDALKGEG--SSWGNQMRSYVLHPYQMVKDLRTEHE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ +VLDG I F+EA I RR +
Sbjct: 339 TGNTAAVLDGEIDSFVEAGIRWRRQQE 365
>gi|366053902|ref|ZP_09451624.1| peptide chain release factor 2 [Lactobacillus suebicus KCTC 3549]
Length = 332
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 163/325 (50%), Gaps = 9/325 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ E++ + + + LR ++ ++ L + E+ D + +
Sbjct: 6 FWNDGQKAQELIGENNQLKEKRDTFVGLRDGVDDLRVTWSLLQEES-DADMQQEFDDQLQ 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
V + L+QY + +LL P D A + I G+ G + W E LL M+ RWA + +
Sbjct: 65 SVKQKLEQYRLEQLLNEPYDANNAILEIHPGAGGTESQDWGEMLLRMFTRWAGQHDFEVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
D + G+KS T+ + A+GYL E G H L+ F + H + A VDV+
Sbjct: 125 TADYEAGEEAGIKSVTLLIKGHNAYGYLRSEKGVHRLVRISPFDSAGRRH-TSFASVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ S ++ ISD+DL +F S G+ + A I HIPTGI V S +R+
Sbjct: 184 PE-LDDSTNVDISDDDLRVDVFRSSGAGGQHINKTSSAVRITHIPTGIVVSSQAQRSQLQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+N LK+KL + E+ + I+ E + W + R YV HPY LV+D +T +
Sbjct: 243 NRQTAMNMLKSKLYELEEEKKAKKRAEIQGEQLDIGWGSQIRSYVFHPYTLVKDHRTNFE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
D N+V+DG++ PFI A++ R S
Sbjct: 303 THDGNAVMDGDLDPFINAYLQWRLS 327
>gi|383788715|ref|YP_005473284.1| peptide chain release factor 2 [Caldisericum exile AZM16c01]
gi|381364352|dbj|BAL81181.1| peptide chain release factor 2 [Caldisericum exile AZM16c01]
Length = 363
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 150/271 (55%), Gaps = 6/271 (2%)
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K A D +KL+ ++E+ + L P D A V+ +G+ G+ + W E LL MY+R+
Sbjct: 94 KEAQEVLFDANKLVKEFEIERFLSEPYDDLNAFVSFSSGAGGVDAQDWTEMLLKMYLRFF 153
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+K+G+ +++D+ + G+KSAT+ + E+A+G L GE+G H L+ + + +
Sbjct: 154 EKKGFEAKIIDQTVGEEAGIKSATVYVKGEFAYGLLKGESGVHRLVRISPFDANRRRHTS 213
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V+VVP E D++I ++DL +F + G+ + A I HIPTGI
Sbjct: 214 FALVEVVPDLGEVE-DIEIDEKDLKIEIFRASGHGGQNVQKVETAVRITHIPTGITATCQ 272
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ NK A+ LK++L+++ ++ + +K W E R YV PYKLV+
Sbjct: 273 DERSQTQNKAMAMKILKSRLMLLEKKKQEETLKGLKGAFRSIEWGNEIRSYVLQPYKLVK 332
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSRR 324
D +TG+++ + + VL+G + FI A++ S++
Sbjct: 333 DHRTGVEIGNVDEVLEGELDEFIWAYLKSKK 363
>gi|291459037|ref|ZP_06598427.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418291|gb|EFE92010.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 078
str. F0262]
Length = 378
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 164/327 (50%), Gaps = 11/327 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLF 58
M+ + W DP ++N + ++ + N L+ + + I L EM E D +
Sbjct: 40 MMEEPDFWTDPERANRLST---ENHHLKNELESYQSLKQSYDDIGALIEMGVEEGDESVI 96
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ S+ LD LL G D A + + AG+ G WA L MY RWA
Sbjct: 97 PEIRELLSEFSEKLDSMSTQLLLSGEYDAMNAILRLNAGAGGTEANDWAGMLYRMYTRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ G+ +++D + G+KS T+E + +YA+GYL E+G H L+ N + +
Sbjct: 157 ERRGFGIKILDYLEGEEAGIKSVTMEIDGDYAYGYLRSESGIHRLVRISPFNAQGKRQTS 216
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
DV+P +ET D+ I +ED+ +F S G+ + A + HIPTG V
Sbjct: 217 FVSCDVMP-DIETDIDVDIREEDIKMEVFRSSGAGGQHINKTSSAVRLIHIPTGFVVACQ 275
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ N+ KA+ LKAKL + E+ + ++ I+ E N W + R YV PY++V+
Sbjct: 276 EERSQLQNRQKAMQMLKAKLYIKEKEEQEAKLAGIRGEVKDNGWGSQIRSYVLQPYRMVK 335
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHI 320
D++TG + + ++VLDG+I FI A++
Sbjct: 336 DLRTGEETGNTDAVLDGDIDRFITAYL 362
>gi|256848105|ref|ZP_05553549.1| peptide chain release factor 2 [Lactobacillus coleohominis
101-4-CHN]
gi|256715165|gb|EEU30142.1| peptide chain release factor 2 [Lactobacillus coleohominis
101-4-CHN]
Length = 332
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 136/258 (52%), Gaps = 6/258 (2%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
V K L+QY +S+LL GP D A + I G+ G + W E LL MY+RWAD+ +
Sbjct: 66 VEKQLEQYRLSQLLSGPYDANNAILEIHPGAGGTEAQDWGEMLLRMYLRWADQHSFDVET 125
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+ G+KS T+ + AFGYL E G H L+ + + + A VDV+P
Sbjct: 126 AAYEAGEEAGIKSVTLLIKGHNAFGYLHPEKGVHRLVRISPFDAAGRRHTSFASVDVMPE 185
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANK 242
L+ S ++ I DL F S G+ + + A I H+PTGI S ER+ N+
Sbjct: 186 -LDESVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHLPTGIVTSSQAERSQLQNR 244
Query: 243 MKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLP 302
+ A+N LK+KL + E+ + ++ E + W + R YV HPY LV+D +TG +
Sbjct: 245 VTAMNMLKSKLYELEQEKQAKQRAELEGEQLEIGWGSQIRSYVFHPYTLVKDNRTGYETH 304
Query: 303 DFNSVLDGNIKPFIEAHI 320
D SV+DG++ PFI A++
Sbjct: 305 DGQSVMDGDLDPFINAYL 322
>gi|373253623|ref|ZP_09541741.1| peptide chain release factor 2 [Nesterenkonia sp. F]
Length = 372
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 173/326 (53%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ +N L L + ++ + + ++ + E D + A
Sbjct: 44 DLWNDQEHAQKVTSQLSHKQAELNRLTKLESRIDDVETMVEMGQEEG-DAATLQEARDEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK L+ E+ LL G D A VTI+AG+ GI +AE LL MY RWAD +
Sbjct: 103 SAISKDLESLEIVTLLSGEYDERDAVVTIRAGAGGIDAADFAEMLLRMYTRWADHRNWDV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT E + YAFG +S E G H L+ + + + A V+V+
Sbjct: 163 KILDTSYAEEAGLKSATFEVKAPYAFGTMSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + +L ++ S G+ + A I H+PTG V E++
Sbjct: 223 PL-IEGTDHVEIDENELKIDVYRSSGPGGQSVNTTDSAVRITHLPTGTVVAMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LL++ ++ + K+E +I W + R YV HPY++V+D++T
Sbjct: 282 NRAAAMRVLQSRLLLLKQQEEAAE----KKELAGDIKASWGDQIRSYVLHPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G ++ + +++ DG++ FI+A I R
Sbjct: 338 GHEVGNTSAIFDGDLDGFIDAGIRWR 363
>gi|357038237|ref|ZP_09100035.1| Peptide chain release factor 2 [Desulfotomaculum gibsoniae DSM
7213]
gi|355359812|gb|EHG07572.1| Peptide chain release factor 2 [Desulfotomaculum gibsoniae DSM
7213]
Length = 329
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 164/325 (50%), Gaps = 7/325 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++ +++ EV + + + + A +L E+ +++ L E E D L A A
Sbjct: 6 FWEEQSRAQEVTQTVTNLKERITAFSELYGAMEDLEVLIDLGEEEN-DDSLADEAEAALA 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ + EM +L GP D A V + AG+ G + W LL M+ RWA+ G+R
Sbjct: 65 QLNRRVAGLEMQVMLSGPYDAGNAIVAMHAGAGGTEAQDWVAMLLRMFTRWAENRGFRVN 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D GVKS T AFGYL E G H L+ + + + A VDV+P
Sbjct: 125 IMDMLPGDEAGVKSVTFSVAGHNAFGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDVLP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ D+QI EDL + S G+ + A I H+PTGI VQ ER+ +N
Sbjct: 185 E-VQDDIDVQIDPEDLKIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQCQNERSQLSN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LKAKL + ++ + ++ ++ E W + R YV HPY LV+D +TG+++
Sbjct: 244 RNTAMKLLKAKLFDLEMQKKDAELAQMRGENKEIAWGSQIRSYVFHPYSLVKDHRTGVEM 303
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSS 326
+ ++V+DG I FI A++ + S
Sbjct: 304 GNVDAVMDGEIDDFITAYLREQARS 328
>gi|339441273|ref|YP_004707278.1| hypothetical protein CXIVA_02090 [Clostridium sp. SY8519]
gi|338900674|dbj|BAK46176.1| hypothetical protein CXIVA_02090 [Clostridium sp. SY8519]
Length = 335
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 164/320 (51%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP +S++ +L + + L+ E+ +++ ++ E D + +
Sbjct: 5 DFWNDPEESSKKTQELKSKKDDIAVYQKLKGLMEDMEVMIEMGNEEN-DPSVIPELEAMA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + +++ ++ LL G D A VT+ +G+ G W L MY RWA+ +G++
Sbjct: 64 EDLKQTMEETKVKTLLSGEYDRNNAIVTLHSGAGGTEACDWVSMLYRMYTRWAESKGFQV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E AFG L E G H L+ N + + + A DV+
Sbjct: 124 EVLDYLDGDEAGIKSVTFQVNGENAFGLLKSERGVHRLVRISPFNAAGKRQTSFASCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I DED+ + S G+ + A I H+PTGI VQ ER+
Sbjct: 184 PE-IDQEIDIEIRDEDIRVDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQHM 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LK+KL ++ E+ + + I+ E W + R YV PY +V+D++TG +
Sbjct: 243 NKDKAMQMLKSKLYLLEQEKNAAKQADIRGEVTDIGWGNQIRSYVMQPYTMVKDLRTGEE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +SV+DGN+ PFI A++
Sbjct: 303 TGNVSSVMDGNLDPFINAYL 322
>gi|15606882|ref|NP_214263.1| peptide chain release factor 2 [Aquifex aeolicus VF5]
gi|6225943|sp|O67695.1|RF2_AQUAE RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|2984119|gb|AAC07656.1| peptide chain release factor RF-2 [Aquifex aeolicus VF5]
Length = 373
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 164/322 (50%), Gaps = 10/322 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID-YGLFKRAYRA 64
N W+D K+ +V+ + + +N LK+L ++ + + ++ E + + + +
Sbjct: 44 NFWEDQEKAKQVIQRRKWVEETLNKLKNLEKSVKDLEELVEITSEEDTETWAMMDEEIK- 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+V + L + E+ L G D + A +TI+AG+ G WA+ L MY RWA+K+GY
Sbjct: 103 --EVERTLRELELKTYLSGEMDAKNAYLTIQAGAGGTEACDWADMLFRMYKRWAEKKGYE 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
++D G+KS T+ + YA+GYL GE G H L+ + + + A V V
Sbjct: 161 VELIDITPDDVAGIKSVTVLVKGPYAYGYLKGEQGVHRLVRISPFDANARRHTSFAAVSV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P ++ ++I EDL F + G+ + A I HIPTGI V ER+ +
Sbjct: 221 MPQ-IDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRITHIPTGITVSCQQERSQY 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK KAL LKAKL + ++ + E W + R YV HPYKL++D++TG
Sbjct: 280 QNKRKALELLKAKLYQLEMKKLEEKKKQYEGEKTDIGWGHQIRSYVFHPYKLIKDLRTGY 339
Query: 300 QLPDFNSVLDGNIKPFIEAHIN 321
+ + +V+DG I FIE+++
Sbjct: 340 ETGNVEAVMDGEIDEFIESYLK 361
>gi|148270343|ref|YP_001244803.1| peptide chain release factor 2 [Thermotoga petrophila RKU-1]
gi|166225119|sp|A5IM04.1|RF2_THEP1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|147735887|gb|ABQ47227.1| bacterial peptide chain release factor 2 (bRF-2) [Thermotoga
petrophila RKU-1]
Length = 367
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 171/327 (52%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL LKAKL + E+ + I+ E W + R YV HPY +V+D +TG++
Sbjct: 280 NKQTALKILKAKLYQLEMEKKQREIQEIQGELKDISWGNQIRSYVFHPYTMVKDHRTGVE 339
Query: 301 LPDFNSVLDGNIKPFIEAHI--NSRRS 325
+ ++V+DG+I FIEA + +RRS
Sbjct: 340 TANVDAVMDGDIDMFIEAELVYFARRS 366
>gi|312135785|ref|YP_004003123.1| hypothetical protein Calow_1789 [Caldicellulosiruptor owensensis
OL]
gi|311775836|gb|ADQ05323.1| hypothetical protein Calow_1789 [Caldicellulosiruptor owensensis
OL]
Length = 372
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 172/329 (52%), Gaps = 7/329 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + +
Sbjct: 43 NPDFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LEEGNHDMAEELEK 101
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY
Sbjct: 102 ELLDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGY 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D + G+K+ T+ E A+GYL E G H L+ + + + A V+
Sbjct: 162 KVETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVE 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P +E D++I +EDL F + G+ + + A I+HIPTGI V ER+
Sbjct: 222 VLP-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQ 280
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ AL LKAKLL + ++ + +K E W + R YV PY LV+D +T
Sbjct: 281 HKNREIALKILKAKLLELKEKERREKIQKLKGEQTEIGWGNQIRSYVFCPYTLVKDHRTE 340
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +V+DG I FI A++ R+ +
Sbjct: 341 AEVGNVEAVMDGEIDVFINAYLKKFRNEE 369
>gi|297171258|gb|ADI22265.1| protein chain release factor B [uncultured Gemmatimonadales
bacterium HF0200_36I24]
gi|297171357|gb|ADI22361.1| protein chain release factor B [uncultured nuHF2 cluster bacterium
HF0500_02A10]
Length = 334
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 162/323 (50%), Gaps = 15/323 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALK---DLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WD+ K++EV+ A+S ++ N +K DL K E I L E E D L
Sbjct: 6 FWDNQDKASEVI---AESNRLKNWVKPWHDLNTKVSELTEIRDLLEHED-DEDLTHELIS 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ E+ +L+GP+D GA +T+ G+ G+ + WAE L MY RWA+ GY
Sbjct: 62 EVDKIEGPIEDLELRTMLQGPDDHRGAILTVHPGAGGLESQDWAEMLTRMYSRWAENHGY 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V+D G+KSAT+E +A+GYL E G H L+ F S H + A V
Sbjct: 122 DLNVLDMQPGDEAGIKSATLEVVGGHAYGYLKAEKGIHRLVRISPFDAQSRRH-TSFASV 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+ PL ++ +++I++ DL F + G+ + A I HIPTGIAV ER+
Sbjct: 181 FIYPL-VDDEIEIEIAESDLRVDTFRASGAGGQHVNKTDSAIRITHIPTGIAVSCQQERS 239
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+A L E+ I+ W + R YV PY +V D +T
Sbjct: 240 QHMNRATAMKMLQASLYERALEEKEQEKEAIEATKTDIGWGNQIRSYVFQPYTMVNDHRT 299
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
+++ D N V+DGN+ PFIEA++
Sbjct: 300 DLKISDVNKVMDGNLDPFIEAYL 322
>gi|117928939|ref|YP_873490.1| peptide chain release factor 2 [Acidothermus cellulolyticus 11B]
gi|166223620|sp|A0LVP4.1|RF2_ACIC1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|117649402|gb|ABK53504.1| bacterial peptide chain release factor 2 (bRF-2) [Acidothermus
cellulolyticus 11B]
Length = 369
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 165/319 (51%), Gaps = 8/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+DP + V +L+ + ++ LR + ++ ++ +LAE E D A
Sbjct: 45 LWNDPENAQRVTSRLSFLQAEIRRVEGLRKRLDDVMVLFELAEAEN-DEPTRTEALAEMA 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K +D E+ LL G D A VTI + + G+ WA+ LL MY+RWA++ GY
Sbjct: 104 ALQKAIDDLEVRTLLSGEYDAREALVTINSQAGGVDAADWAQMLLRMYLRWAERHGYPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + +G L+ E G H L+ + + + A VDVVP
Sbjct: 164 ILDTSYAEEAGIKSATFIVHAPFTYGLLAAEHGTHRLVRISPFDNQARRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +E + + I ++++ +F S G+ + A I H+PTGI V ER+ N
Sbjct: 224 V-VEKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ L+A+LL ++ + ++ ++ E + W + R YV HPY+LV+D++T ++
Sbjct: 283 RATAMMVLQARLLERRRQEEAAKLAALRGETTTS-WGTQIRNYVLHPYQLVKDLRTEVET 341
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ VLDG I FI+A +
Sbjct: 342 SNTAGVLDGEIDEFIDAGV 360
>gi|440696583|ref|ZP_20879039.1| peptide chain release factor 2 [Streptomyces turgidiscabies Car8]
gi|440281166|gb|ELP68825.1| peptide chain release factor 2 [Streptomyces turgidiscabies Car8]
Length = 368
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEEAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TSVKKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVNVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|227872846|ref|ZP_03991157.1| peptide chain release factor RF2 [Oribacterium sinus F0268]
gi|227841316|gb|EEJ51635.1| peptide chain release factor RF2 [Oribacterium sinus F0268]
Length = 378
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 169/329 (51%), Gaps = 15/329 (4%)
Query: 1 MVRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL 57
M+ + W DP K+N++ + L D L+ ALK E+ + + Q+ + E D +
Sbjct: 40 MMEEPDFWGDPEKANKLSTEARHLKDELEGFTALKG---NYEDIEALIQMGKEENDDSVI 96
Query: 58 FKRAYRASLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+ R LD S+ LDQ + LL G D + + AG+ G WA L MY R
Sbjct: 97 PE--IRELLDSFSERLDQMNTTLLLSGEYDSMNVILRLNAGAGGTEANDWAGILYRMYTR 154
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHE 174
WA++ G+ +++D G+KS T+E EYA+GYL E+G H L+ N +
Sbjct: 155 WAERHGFTVKILDYLDGDEAGIKSVTMEVVGEYAYGYLRSESGIHRLVRISPFNAQGKRQ 214
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQ 231
+ DV+P +ET D++I +ED+ +F + G+ + A + HIPTG
Sbjct: 215 TSFVSCDVMP-DIETDIDIEIREEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGFVAA 273
Query: 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKL 291
ER+ NK KA+ LK KL + E+ + ++ I+ E N W + R YV PY++
Sbjct: 274 CQEERSQLQNKNKAMQMLKTKLYLKEKEEQEAKLAGIRGEVKDNGWGSQIRSYVLQPYRM 333
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
V+D++TG + + ++VLDG+I FI A++
Sbjct: 334 VKDLRTGEESGNTDAVLDGDIDRFISAYL 362
>gi|453077037|ref|ZP_21979799.1| peptide chain release factor 2 [Rhodococcus triatomae BKS 15-14]
gi|452760158|gb|EME18500.1| peptide chain release factor 2 [Rhodococcus triatomae BKS 15-14]
Length = 367
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 179/331 (54%), Gaps = 13/331 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW++ + +V +L+ + + +++LR + ++ +++ +LAE + + A R
Sbjct: 43 DLWNNQEHAQQVTSQLSHAQAELRRVEELRSRLDDMEVLYELAEEDGAEAVADADAERHK 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L D++ + E+ +L G D A V I++G+ G+ WAE L+ MY+RWA+K GY
Sbjct: 103 LREDIAAM----EVKTMLSGDYDERDALVNIRSGAGGVDAADWAEMLMRMYIRWAEKHGY 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + YA+G LS E G H L+ + + + A V+
Sbjct: 159 GVEVYDTSYAEEAGIKSATFAVKAPYAYGTLSIEMGTHRLVRISPFDNQGRRQTSFAEVE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 VLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 278 LQNKVSAMRVLQAKLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTE 336
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ + ++VLDG+I FIE+ I R + D
Sbjct: 337 YEVNNPSAVLDGDIDGFIESGIRWRMRGEQD 367
>gi|410866577|ref|YP_006981188.1| Peptide chain release factor 2 [Propionibacterium acidipropionici
ATCC 4875]
gi|410823218|gb|AFV89833.1| Peptide chain release factor 2 [Propionibacterium acidipropionici
ATCC 4875]
Length = 368
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V +L+ V L+ LR + E+ ++ + A + G A A
Sbjct: 44 DLWDDQEHAQQVTSRLSALQSQVEKLEQLRSRIEDVGVLLEFAG----EGGDADSAAEAE 99
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++S L +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++
Sbjct: 100 GEISSLRTEIDALEVRTLLSGKYDEREALVTIRSEAGGVDAADFAEMLLRMYLRWAERHQ 159
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ V+D + G+KSAT +A+G LS E G H L+ + + + A V
Sbjct: 160 YKVEVLDTSYAEEAGIKSATFIVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGV 219
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 220 EVLPVVEETDH-VDIPEADLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERS 278
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK AL L+AKLL + + ++ +K E N W + R YV HPY++V+D++T
Sbjct: 279 QIQNKAAALRVLQAKLLEKARAEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++V DG+I FI+A I RR
Sbjct: 337 NHEVGNTDAVFDGDIDAFIDAGIRWRR 363
>gi|338730825|ref|YP_004660217.1| peptide chain release factor 2 (bRF-2) [Thermotoga thermarum DSM
5069]
gi|335365176|gb|AEH51121.1| bacterial peptide chain release factor 2 (bRF-2) [Thermotoga
thermarum DSM 5069]
Length = 367
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 168/322 (52%), Gaps = 13/322 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D ++E+ KL + K++ + + EE ++ +L++ D + R
Sbjct: 44 DIWNDQKSASEIGKKLRRAKKLLEDVTKIDRILEEIEIGLELSDE---DPEFVQDVERRV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K++ Q+++ +L P D A +++ G+ G WA+ LL MY+RWA+K+G+
Sbjct: 101 TNLEKIVKQFQLDLILNDPMDQNNAYLSVHPGAGGTESHDWAQMLLRMYMRWAEKKGFEV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD + GVKSAT+ + EYA+GYL E G H L+ + + + A V+V+
Sbjct: 161 ELVDFQPGEEAGVKSATLLIKGEYAYGYLKHERGVHRLVRISPFDAAGRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQIS--DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
P E S D++I EDL F + G+ + A I HIPTGI V ER+
Sbjct: 221 P---ELSDDIEIEIRPEDLKIETFRASGHGGQYVNKTDSAVRITHIPTGIVVSCQSERSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK +AL LKA+L + + + ++ E W + R Y+ HPYKLV+D +T
Sbjct: 278 HQNKAQALKMLKARLYQLEMLKRKEKIEELQGELKEIAWGNQIRSYILHPYKLVKDHRTE 337
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ D +VLDG I FIEA +
Sbjct: 338 VETGDAEAVLDGEIDLFIEAEL 359
>gi|403739010|ref|ZP_10951611.1| peptide chain release factor 2 [Austwickia chelonae NBRC 105200]
gi|403191660|dbj|GAB78381.1| peptide chain release factor 2 [Austwickia chelonae NBRC 105200]
Length = 383
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 174/328 (53%), Gaps = 13/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L+ + + ++ + + E+ +++ ++A + D A
Sbjct: 53 DLWDDQENAQAVTSRLSRANAELERIEGMDSRIEDLEVLVEMATEDGGDAETLAEAEDEL 112
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K + + E+ LL G D A VTI++G+ G+ +AE L+ MY+RWA++ GY
Sbjct: 113 ASLRKAVGELEVRTLLNGEYDEREAVVTIRSGAGGVDAADFAEMLMRMYLRWAERHGYPT 172
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G L+ E G H L+ + + + A V+V+
Sbjct: 173 AVLDTSYAEEAGLKSATFEVKVPYAYGNLAVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 232
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E++ + I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 233 PL-IESTDTIDIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 291
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL++ ++ K+E ++ W + R YV HPY++V+D++T
Sbjct: 292 NRAAALRVLQSRLLLLKKQEE----DAKKKELAGDVKASWGDQMRSYVLHPYQMVKDLRT 347
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + + V DG+I F+EA I +RS
Sbjct: 348 EHEVGNTSGVFDGDIDAFLEAGIRWKRS 375
>gi|302534760|ref|ZP_07287102.1| peptide chain release factor 2 [Streptomyces sp. C]
gi|302443655|gb|EFL15471.1| peptide chain release factor 2 [Streptomyces sp. C]
Length = 369
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 171/327 (52%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA+ E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLAVLFELAQ-EMDDADTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 VSVRKALDEMEVRTLLSGEYAEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +ETS ++I + +L ++ + G+ + A I HIPTGI V ER+
Sbjct: 223 PV-VETSDHVEIDESELRVDVYRASGPGGQGVNTTDSAVRITHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQARMDALKDGG--SSWGNQMRSYVLHPYQMVKDLRTEFE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG I F+EA I R+ +
Sbjct: 340 VGNPQAVLDGEIDGFLEAGIRWRKQQE 366
>gi|441516620|ref|ZP_20998368.1| peptide chain release factor 2 [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441456673|dbj|GAC56329.1| peptide chain release factor 2 [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 372
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 175/332 (52%), Gaps = 13/332 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA----Y 62
LW+D + +V +L+ + + + +LR + ++ ++ +L EME + + +A
Sbjct: 44 LWNDQDHAQQVTSRLSHAQSEMRRVTELRERLDDLPVLYELVEMEEGEAQVQAQADADAE 103
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RA L ++ E+ +L G D A V I++G+ GI WA+ L+ MY+RWA++ G
Sbjct: 104 RAGLRAD--VEAMEVKTMLAGEYDAREAVVNIRSGAGGIDAADWAQMLMRMYIRWAEQHG 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT + Y +G LS E G H L+ + + + A V
Sbjct: 162 YPVEVYDTSYAEEAGIKSATFVVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +ET+ + I + ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 EVLPV-VETTDRIDIDENEVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L AKLL ++ + + +K ++ + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVSAMRVLAAKLLERKRQEERAQLDALKSDSGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
G++ + VLDG++ FIEA I R D D
Sbjct: 340 GVEGNNPTQVLDGDLDEFIEAGIRWRMDDDGD 371
>gi|284023776|ref|ZP_06378174.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
132]
Length = 331
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 167/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I+PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIRPFIESYLRQTMSHD 331
>gi|347530813|ref|YP_004837576.1| peptide chain release factor 2 [Roseburia hominis A2-183]
gi|345500961|gb|AEN95644.1| peptide chain release factor 2 [Roseburia hominis A2-183]
Length = 339
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 155/320 (48%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP S + + +L V L + E+ + + ++ E D L
Sbjct: 5 DFWNDPEVSQKKMKELKSMKDDVATYASLTTQFEDIETLIEMG-YEENDATLIPEIEEML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + D LL G D + A V++ AG+ G WA L MY RWAD +GY
Sbjct: 64 TEFTTTYDAIRAKTLLSGEYDGDNAIVSLHAGAGGTESCDWAAMLYRMYTRWADDKGYSV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGEEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I+D+DL + S G+ + A I H+PTGI VQ ER+ F
Sbjct: 184 P-DIEEDLDVEINDDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQFQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ ++ + I+ E W + R YV PY +V+D +TG++
Sbjct: 243 NKDKAMQMLKAKLYLLKQQENAEKAAGIRGEVTEIGWGNQIRSYVMQPYTMVKDHRTGVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +SVLDG + F+ ++
Sbjct: 303 TGNVDSVLDGKLDIFMNGYL 322
>gi|414161420|ref|ZP_11417680.1| peptide chain release factor 2 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876316|gb|EKS24227.1| peptide chain release factor 2 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 332
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 162/323 (50%), Gaps = 8/323 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ E++ K VV +DL + E+ +L + E D L ++
Sbjct: 6 FWDDQNKAQEIIDKNNALKSVVQGYRDLEAEIEDMNATHELLQ-EEYDEDLKADLEEETV 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ LL GP D A + + G+ G + WA LL MY R+A+ + ++
Sbjct: 65 NFKSKLDEFELQLLLNGPYDDNNAILELHPGAGGTESQDWASMLLRMYQRYAEDKNFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V D GVKS T+ + A+GYL E G H L+ F + H + ++C DV+
Sbjct: 125 VADYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F ++ I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PEFNNNEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQEKEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ N+V+DG I PFIEA++ ++
Sbjct: 304 TGNVNAVMDGEIGPFIEAYLRTQ 326
>gi|379795225|ref|YP_005325223.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872215|emb|CCE58554.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 369
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 165/332 (49%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ ++ + +L + E D +
Sbjct: 39 MMSEPNFWDNQTKAQDIIDKNNALKSIVNGYKKLQQDVDDMEATWELLQ-EEFDEEMKVD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +D +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQDVIDFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGEIGPFIESYLRQTMSHD 369
>gi|403252111|ref|ZP_10918424.1| protein chain release factor B [actinobacterium SCGC AAA027-L06]
gi|402914638|gb|EJX35648.1| protein chain release factor B [actinobacterium SCGC AAA027-L06]
Length = 368
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 175/325 (53%), Gaps = 9/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + + KL+ + +N + +R + ++ ++ +LA E+ FK R
Sbjct: 44 NLWDDPQAAQVITSKLSRAQSTINKINSIRSRLDDMPVMVELALSESDKAAAFKDVDREL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++K+++ E+ LL G D A +TI++ + G+ WA+ L+ MYVR+ ++ Y+
Sbjct: 104 DELTKVINDLEVQTLLSGEYDERDALMTIRSEAGGVEAADWAQMLMRMYVRYCERHNYKI 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V++ + G+KS T YA+G LS E G H L+ F + S H + A V+V
Sbjct: 164 DVLETSYAEEAGIKSTTFRISAAYAYGRLSVEQGTHRLVRISPFDSQSRRH-TSFAGVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP+ +E S ++I ++DL ++ S G+ + A I H+P+GI V ER+
Sbjct: 223 VPV-VEQSDHIEIEEKDLRVDVYRSSGPGGQGVNTTDSAVRITHLPSGIVVSCQNERSQI 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ L++KLL + + + +K + W + R YV PY++V+D++T
Sbjct: 282 QNRATAMAVLQSKLLERRRLEERAKMDALKGDN-SGSWGNQMRSYVLAPYQMVKDLRTDF 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++VLDG++ FIEA I R+
Sbjct: 341 EVGNPSAVLDGDLDGFIEAGIKWRK 365
>gi|163784774|ref|ZP_02179571.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879956|gb|EDP73663.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
Length = 348
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 146/267 (54%), Gaps = 8/267 (2%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ L++++E+ LL G D + A V+++AGS G+ WAE LL MY+RWA+K GY
Sbjct: 81 NLETLINKFEVESLLSGEYDSKNAIVSVQAGSGGVEACDWAEMLLRMYLRWAEKNGYNVE 140
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+VD G+KSAT + YA+GYL GE G H L+ F + H + A V V+
Sbjct: 141 IVDYQPDDVAGIKSATFIVKGPYAYGYLQGEQGVHRLVRISPFDSNKRRH-TSFAAVSVI 199
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E ++I+++DL F + G+ + A I HIPTGI V ER+
Sbjct: 200 PEIGE-EIKVEINEDDLRIDTFRASGAGGQHVNKTDSAVRITHIPTGIVVSCQSERSQIQ 258
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KA+ LKAKL + E+ ++ E W + R YV HPY++V+D++TG +
Sbjct: 259 NRAKAMQMLKAKLYQLEIEKQKEKRKELEGEKKEISWGSQIRSYVFHPYQMVKDLRTGYE 318
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ +V+DG I F+E ++ + S++
Sbjct: 319 TGNIQAVMDGEIDSFMETYLKYKVSAN 345
>gi|359426085|ref|ZP_09217172.1| peptide chain release factor 2 [Gordonia amarae NBRC 15530]
gi|358238562|dbj|GAB06754.1| peptide chain release factor 2 [Gordonia amarae NBRC 15530]
Length = 371
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 175/331 (52%), Gaps = 17/331 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW++ + +V +L+ + + +LR + E+ ++ +LAE E G + A A
Sbjct: 44 LWNNQDHAQKVTSELSHAQAEFRKVSELRQRLEDMPVLYELAESEE---GEDRTAALADA 100
Query: 67 DVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
D + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+K
Sbjct: 101 DEERAALRTDIEAMEVKTMLAGEYDARDALVNIRSGAGGVDAADWAQMLMRMYIRWAEKH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 HYGVEVYDTSYAEEAGIKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + I++ DL ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIDIAETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKAAAMRVLQAKLLERKRQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T ++ + ++VLDG I PFIEA I R +S
Sbjct: 338 RTNVENNNPSAVLDGEIDPFIEAGIRWRMAS 368
>gi|257069176|ref|YP_003155431.1| peptide chain release factor 2 [Brachybacterium faecium DSM 4810]
gi|256559994|gb|ACU85841.1| bacterial peptide chain release factor 2 (bRF-2) [Brachybacterium
faecium DSM 4810]
Length = 371
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 170/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V L+ + + +L + E+ +++ QLA E D + A
Sbjct: 44 DLWDDVDNAQKVSSALSHAQSERRRISELDSRIEDLEVMVQLA-AEEDDADTLEEAENEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K LD+ E+ LL G D A +TI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 VSIHKTLDELEVRTLLSGEYDERDAVITIRAGAGGVDAADFAEMLMRMYLRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSHAEEAGLKSVTFEVSAPFAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E++ ++I + DL +F S G+ + A + H+PTG V E++
Sbjct: 223 PL-IESTDSIEIPENDLKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGTVVSMQDEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL ++++LL++ + + + + + W + R YV +PY++V+D++T Q
Sbjct: 282 NRAAALRVMQSRLLLLKKAEEAAERKELAGDVKAS-WGDQMRSYVLNPYQMVKDLRTDYQ 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ +SV DG I FI+A I R
Sbjct: 341 EGNPSSVFDGEIDEFIDAGIRWR 363
>gi|296118845|ref|ZP_06837421.1| peptide chain release factor 2 [Corynebacterium ammoniagenes DSM
20306]
gi|295968334|gb|EFG81583.1| peptide chain release factor 2 [Corynebacterium ammoniagenes DSM
20306]
Length = 367
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 171/328 (52%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + E+ ++ +LAE E D L A
Sbjct: 43 SLWDDPDHAQKVTSELSSTQAKLRKLSALRGRLEDLPVMYELAEEEG-DASLADDELDAV 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + L E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 102 RDAVETL---EVTTMLSGDYDQREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DVYDISYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRLSPFDNQNRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I D ++ ++ S G+ + A + H+PTGI V E++
Sbjct: 219 PV-VEQTDSIEIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIMVTCQNEKSQIQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 278 NKASAMRVLQAKLLERKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNHE 336
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ D + VL G+I F+EA I R + T
Sbjct: 337 VGDPSKVLGGDIDDFLEAGIRWRMAEQT 364
>gi|227494927|ref|ZP_03925243.1| peptide chain release factor RF2 [Actinomyces coleocanis DSM 15436]
gi|226831379|gb|EEH63762.1| peptide chain release factor RF2 [Actinomyces coleocanis DSM 15436]
Length = 372
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 170/325 (52%), Gaps = 8/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + V +L+ + + ++ + + ++ + I ++AE + + L A
Sbjct: 43 DLWDNPEAAQAVTSELSHTQAELGRIEKMVERIDDLETIVEMAEEDLDEKDLLLEEAEAD 102
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + + L E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LAGIRQALADLEIKTLLSGEYDERSAVVTIRAGAGGVDAADFAEMLLRMYLRWAERNGYP 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 223 IPL-IETTDHIEIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQI 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ AL L+++LL + E+ + + + + W + R YV PY++V+D++T
Sbjct: 282 QNRAAALRVLQSRLLQLRHEEEQAAKKALAGDVKAS-WGDQMRSYVLQPYQMVKDLRTSH 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRR 324
+ + +V DG I FI A I R+
Sbjct: 341 ENGNTGAVFDGEIDDFINAGIRWRK 365
>gi|342732927|ref|YP_004771766.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456295|ref|YP_005668892.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417962232|ref|ZP_12604484.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-2]
gi|417964130|ref|ZP_12605901.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-3]
gi|417964940|ref|ZP_12606573.1| Peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-4]
gi|417966272|ref|ZP_12607665.1| Putative peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-5]
gi|417969365|ref|ZP_12610306.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-co]
gi|418015665|ref|ZP_12655230.1| peptide chain release factor RF2 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373178|ref|ZP_12965269.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330382|dbj|BAK57024.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506000|gb|EGX28294.1| peptide chain release factor RF2 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984640|dbj|BAK80316.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380330419|gb|EIA21694.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-3]
gi|380330768|gb|EIA21943.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-2]
gi|380338028|gb|EIA26981.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-co]
gi|380339441|gb|EIA28178.1| Peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-4]
gi|380341567|gb|EIA30041.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380343212|gb|EIA31617.1| Putative peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-5]
Length = 331
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 17/330 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLK-----VVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
M+ + WDD S + V+++ SLK V N KD Y E +LI + E I
Sbjct: 1 MMEDTKFWDDVENSTRI-VRISKSLKDRIDEVNNLSKDYEYLLESLELIKDDNDEEYI-- 57
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+FK + D L+D + +L G D A +TI AG+ G+ + W+E L MY+
Sbjct: 58 KIFKDDFYKFKD---LIDNLSIRTILNGEYDKNNAFLTIHAGAGGVDAQDWSEMLFRMYM 114
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RW ++ + V++ G+KSATI+ E EYA+GY+ GE G H L+ N +
Sbjct: 115 RWGEENKFTLNVIEYTIGDEAGIKSATIKIEGEYAYGYMKGERGIHRLVRISPFNANGKR 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+++P ++ +++I++ +L + + G+ + + A I H+ TGI V
Sbjct: 175 QTSFASVEILPE-IQNIKEVKINESELKIDTYRASGAGGQHVNKTESAVRITHLKTGIVV 233
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
Q ER+ +NK A+ L +KL+ + + + + + + R YV HPY
Sbjct: 234 QCQNERSQLSNKETAMKMLVSKLIELKDRTHKEKLEDLTGDLKEIGFGSQIRSYVMHPYT 293
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
LV+D + +++ D N VLDG+I FI+ HI
Sbjct: 294 LVKDHRMNVEISDINKVLDGDIDIFIKNHI 323
>gi|399525176|ref|ZP_10765644.1| peptide chain release factor 2 [Atopobium sp. ICM58]
gi|398373459|gb|EJN51395.1| peptide chain release factor 2 [Atopobium sp. ICM58]
Length = 373
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 174/329 (52%), Gaps = 14/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + ++A + + A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVEMAAEDPDEGADILAEAEAD 102
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LDKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHGYP 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 223 IPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKSQI 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ AL L+++LLV+ E+ + K+E ++ W + R YV PY++V+D++
Sbjct: 282 QNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQPYQMVKDLR 337
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T + + SV DG+I FI A I R++
Sbjct: 338 TEFESGNPQSVFDGDIDGFINAGIRWRKN 366
>gi|396584747|ref|ZP_10485197.1| peptide chain release factor 2 [Actinomyces sp. ICM47]
gi|395547582|gb|EJG15010.1| peptide chain release factor 2 [Actinomyces sp. ICM47]
Length = 373
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 176/331 (53%), Gaps = 18/331 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + ++A E D G A A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRVTQMSERIDDLEAMVEMA-AEDPDEGADILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 ADLEKLHKDLSDLEIRTLLDGEYDERNAVVTIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 221 EVIPL-IETTDHIEIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKS 279
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ AL L+++LLV+ E+ + K+E ++ W + R YV PY++V+D
Sbjct: 280 QIQNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQPYQMVKD 335
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
++T + + SV DG+I FI A I R++
Sbjct: 336 LRTEFESGNPQSVFDGDIDGFINAGIRWRKN 366
>gi|424780263|ref|ZP_18207143.1| Peptide chain release factor 2 [Catellicoccus marimammalium
M35/04/3]
gi|422843221|gb|EKU27662.1| Peptide chain release factor 2 [Catellicoccus marimammalium
M35/04/3]
Length = 327
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 165/324 (50%), Gaps = 11/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ +++ ++ + K + + L + EE +++ +LAE +A F++
Sbjct: 5 DFWDDAERARKIIAEVNLAKKQLETFQSLEQQQEELEMMVELAETDAD----FQQELEEQ 60
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + L YE+ +LL P D A + I G+ G + W LL MY RWA+K ++
Sbjct: 61 LPQFEEQLGAYELEQLLDDPYDHNNALLEIHPGAGGTESQDWGSMLLRMYQRWAEKHHFK 120
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+D G+KS T+ + E A+GYL E G H L+ + + + A V+V
Sbjct: 121 VETMDYQPGDEAGIKSVTLLIKGENAYGYLKSEHGVHRLVRISPFDAANRRHTSFASVEV 180
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P E D++I DEDL + + G+ + + A I H+PTGI V S +R+
Sbjct: 181 MPEINE-DIDIEIKDEDLKIDTYRASGAGGQHINKTESAVRITHLPTGIVVASQAQRSQL 239
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+N LKAKL E+ + ++ E + N W + R YV HPY +V+D +T
Sbjct: 240 KNREIAMNMLKAKLYQKEMEKKAEEQAALRGEQMENGWGSQIRSYVFHPYTMVKDHRTQH 299
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ + +V+DG++ F+ ++ S+
Sbjct: 300 ETGNGQAVMDGDLDAFMNEYLRSQ 323
>gi|302544934|ref|ZP_07297276.1| peptide chain release factor 2 [Streptomyces hygroscopicus ATCC
53653]
gi|302462552|gb|EFL25645.1| peptide chain release factor 2 [Streptomyces himastatinicus ATCC
53653]
Length = 370
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V KL+ + ++LR + ++ +++ +LA E + + +
Sbjct: 44 SLWDDPENAQKVTSKLSYLQGHLRRAEELRGRIDDLEVLFELAADEGDEDARAEAEAELN 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K +D+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ GY+
Sbjct: 104 A-VRKAVDEMEVRTLLSGEYDAREAVVNIRAEAGGVDAADFAEQLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NRATAMNVLQAKLLDRRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG + F+EA I R+ +
Sbjct: 341 VGNPQAVLDGELDGFLEAGIRWRKQRE 367
>gi|297200074|ref|ZP_06917471.1| peptide chain release factor 2 [Streptomyces sviceus ATCC 29083]
gi|297147562|gb|EDY54581.2| peptide chain release factor 2 [Streptomyces sviceus ATCC 29083]
Length = 368
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKADALRSRIDDLAVLFEMAEEED-DSDTLAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TSVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAAMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTDFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|20807024|ref|NP_622195.1| protein chain release factor B [Thermoanaerobacter tengcongensis
MB4]
gi|20515510|gb|AAM23799.1| Protein chain release factor B [Thermoanaerobacter tengcongensis
MB4]
Length = 347
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 168/326 (51%), Gaps = 7/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D KS E+ K +++ + L + E+ + +L +E D + + R
Sbjct: 24 SFWSDLKKSQELSKKQKALKELLEEYESLLSRCEDLYTLIELG-LEEGDESIAEEVEREY 82
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K ++ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 83 KELKKEVENLKIRTLLSGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFEV 142
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT+ + +A+GYL GE G H L+ + + + A V+V+
Sbjct: 143 EILDYLEGEEAGIKSATLLIKGPFAYGYLKGEAGVHRLVRISPFDAAGRRHTSFALVEVI 202
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE +++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 203 PE-LEDDIEIEIRPEDLKIDTFRASGAGGQHVNKTESAVRITHLPTGIVVSCQNERSQIQ 261
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKAKLL ++ ++ + +K E W + R YV PY LV+D +T +
Sbjct: 262 NRETAMKMLKAKLLDLMMKERKEKIEDLKGEHREAAWGNQIRSYVFQPYTLVKDHRTNYE 321
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSS 326
+ N+V+DG I FI A++ + +S
Sbjct: 322 EGNVNAVMDGEIDGFINAYLKQKSAS 347
>gi|404216093|ref|YP_006670288.1| Protein chain release factor B [Gordonia sp. KTR9]
gi|403646892|gb|AFR50132.1| Protein chain release factor B [Gordonia sp. KTR9]
Length = 371
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 176/331 (53%), Gaps = 15/331 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA---- 61
+LW+D + +V +L+ + + + +LR + E+ ++ +LAE E D + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVLYELAEAEEGDDKVTALADADS 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R SL + E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 103 ERESLRTD--IQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKASAMRVLQAKLLDRKRQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+TG++ + SVLDG + FIEA I R ++
Sbjct: 338 RTGVEDNNPASVLDGELDKFIEAGIRWRMAT 368
>gi|383643884|ref|ZP_09956290.1| peptide chain release factor 2 [Streptomyces chartreusis NRRL
12338]
Length = 368
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 VAVKKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S + I + +L ++ S G+ + A I HIPTGI V ER+
Sbjct: 223 PV-VEQSDHVDIDESELRVDVYRSSGPGGQGVNTTDSAVRITHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NRATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I+ F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIQGFLEAGIRWRKQQE 367
>gi|336113350|ref|YP_004568117.1| peptide chain release factor 2 [Bacillus coagulans 2-6]
gi|335366780|gb|AEH52731.1| peptide chain release factor 2 [Bacillus coagulans 2-6]
Length = 331
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 169/326 (51%), Gaps = 9/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD ++ +++ + ++VN ++L + E+ ++ +LA+ E D L +
Sbjct: 9 NFWDDQQEAQKIINESNALKEMVNGYRELESQQEDLEVTYELAKEEN-DQELKEELEAEL 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L++YE+ LL GP D A + + G+ G + W LL MY RW +K+G++
Sbjct: 68 EGFTEKLNEYELQLLLNGPYDANNAILELHPGAGGTESQDWCSMLLRMYTRWGEKKGFKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D GVKS T+ F+ A+GYL E G H L+ F H + ++C +V
Sbjct: 128 ETLDYLPGDEAGVKSVTLLFKGHNAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EV 186
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P ++ + ++++ EDL + + G+ + A I HIPTGI V ER+
Sbjct: 187 MPE-IDDNIEVEVRPEDLRVDTYRASGAGGQHINKTSSAVRITHIPTGIVVSCQSERSQI 245
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ LKAKL E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 246 QNREQAMKMLKAKLYQKEVEEKEKQLAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNV 305
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG I PFI+A++ S S
Sbjct: 306 ETGNVQAVMDGEIDPFIDAYLRSHIS 331
>gi|182624026|ref|ZP_02951814.1| peptide chain release factor 2 [Clostridium perfringens D str.
JGS1721]
gi|177910919|gb|EDT73273.1| peptide chain release factor 2 [Clostridium perfringens D str.
JGS1721]
Length = 323
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 160/321 (49%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+ Y
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKEYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T +
Sbjct: 243 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNFET 302
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 303 SNVNGVMDGDIDNFIIAYLNS 323
>gi|358447104|ref|ZP_09157638.1| peptide chain release factor 2 [Corynebacterium casei UCMA 3821]
gi|356606976|emb|CCE55993.1| peptide chain release factor 2 [Corynebacterium casei UCMA 3821]
Length = 367
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 171/328 (52%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + E+ ++ +LAE E D L A
Sbjct: 43 SLWDDPNHAQKVTSELSATQGKLRKLTTLRGRLEDLPVMYELAEEEG-DASLADEELDA- 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V + ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 101 --VREAIESLEVTTMLSGEYDQREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DIYDVSYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRLSPFDNQNRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I D ++ ++ S G+ + A + H+PTGI V E++
Sbjct: 219 PV-VEQTDSIEIPDSEIRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNEKSQIQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 278 NKASAMRVLQAKLLERKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNHE 336
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ D + VL G I F+EA I R S +
Sbjct: 337 VGDPSKVLGGEIDDFLEAGIRWRMSEQS 364
>gi|440783102|ref|ZP_20960913.1| peptide chain release factor 2 [Clostridium pasteurianum DSM 525]
gi|440219677|gb|ELP58888.1| peptide chain release factor 2 [Clostridium pasteurianum DSM 525]
Length = 327
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 165/322 (51%), Gaps = 13/322 (4%)
Query: 7 LWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WD+ K+ E+ K L D +++VN+L + + E+ + + ++++ E D +
Sbjct: 6 FWDNMKKAQEITQKSKMLKDRVELVNSLDE---RLEDTRSLIEMSKEEE-DEDILNEIVS 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++ ++ + + LL G D A + + G+ G + W E LL MY RWA+ + +
Sbjct: 62 EINELTVRIENFRIELLLSGEYDRNNAILDLHTGAGGTDAQDWTEMLLRMYTRWAESKNF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D GVKSA ++ E+A+GYL E G H L+ N + + + A V+
Sbjct: 122 KVETIDLLPGDEAGVKSAALKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVE 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P E + D+ I EDL + + G+ + + A I HIPTGI VQ ER+
Sbjct: 182 VIPELTE-NQDINIKAEDLRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+N+ A+ LKAKL+ + + + E N + + R YV HPY +V+D +TG
Sbjct: 241 HSNRESAMAMLKAKLVELKERAHKEKIEDLTGELKDNGFGSQIRSYVFHPYTMVKDHRTG 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ + NSV+DGNI FI ++
Sbjct: 301 FEVANINSVMDGNIDSFITEYL 322
>gi|49483011|ref|YP_040235.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|56749421|sp|Q6GIN7.1|RF2_STAAR RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|49241140|emb|CAG39818.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 369
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 167/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ + VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVKTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>gi|385810075|ref|YP_005846471.1| protein release subunit factor B [Ignavibacterium album JCM 16511]
gi|383802123|gb|AFH49203.1| Protein chain release factor B [Ignavibacterium album JCM 16511]
Length = 351
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 167/323 (51%), Gaps = 13/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKA---EEAKLIAQLAEMEAIDYGLFKRAY 62
+ W D + ++L ++ V K + KA EE L+AQ+ E E+ + + K
Sbjct: 28 DFWTDQKSAQQILQEIKSLQSWVELWKSVHQKASAVEETILLAQMEEDESFEEEIDKEL- 86
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K +++ E +L G +D + +TI +G+ G + WAE LL MY+RW +K G
Sbjct: 87 ---AELEKAIEEAEFKNMLSGKDDDKNCILTIHSGAGGTEAQDWAEMLLRMYLRWGEKNG 143
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ ++D G+KSAT+E E +A+GYL E G H L+ + + + A V
Sbjct: 144 YKMTIIDMLEGDGAGIKSATVEVEGPFAYGYLKAENGVHRLVRISPFDANKRRHTSFASV 203
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+P ++ S +++I+ DL + S G+ + + A I HIPTGI ER+
Sbjct: 204 FVIPE-IDDSIEIEINPADLKIDTYRSGGKGGQNVNKVETAVRITHIPTGIVAACQTERS 262
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ LKA+L + E+ + I++ + W + R YV HPY +V+D +T
Sbjct: 263 QLQNRQNAMKLLKARLYQLELEKQKAEQEEIEKSKMKIEWGSQIRSYVFHPYNMVKDHRT 322
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
++ D SV+DG I FI+A++
Sbjct: 323 DVETSDVQSVMDGEIDQFIKAYL 345
>gi|326383344|ref|ZP_08205032.1| peptide chain release factor 2 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198094|gb|EGD55280.1| peptide chain release factor 2 [Gordonia neofelifaecis NRRL
B-59395]
Length = 370
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 175/325 (53%), Gaps = 9/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL--FKRAYR 63
+LW+D + +V +L+ + + + +LR + ++ ++ +LAE E D G+ + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQAELRRVTELRSRLDDLPVLYELAEAEEGDAGVSATEDADT 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
D+ + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++ G+
Sbjct: 103 ERADLRRDIEAMEVKTMLAGEYDPREALVNIRSGAGGVDAADWAQMLMRMYIRWAEQHGH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + Y +G LS E G H L+ + + + A V+
Sbjct: 163 SVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V E++
Sbjct: 223 VLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 282 LQNKVAAMRVLQAKLLERKRQEERAQMDALKSDTGAS-WGNQMRSYVLHPYQMVKDLRTN 340
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ + ++VLDG + FIEA I R
Sbjct: 341 VESNNPSAVLDGELDQFIEAGIRWR 365
>gi|377572554|ref|ZP_09801639.1| peptide chain release factor 2 [Gordonia terrae NBRC 100016]
gi|377530326|dbj|GAB46804.1| peptide chain release factor 2 [Gordonia terrae NBRC 100016]
Length = 371
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 176/331 (53%), Gaps = 15/331 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK----RA 61
+LW+D + +V +L+ + + + +LR + E+ ++ +LA+ E D + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVLYELADAEEGDDKVAALADADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R SL + E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 103 ERESLRTD--IQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKASAMRVLQAKLLDRKRQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+TG++ + SVLDG + FIEA I R ++
Sbjct: 338 RTGVEDNNPTSVLDGELDKFIEAGIRWRMAT 368
>gi|417896571|ref|ZP_12540517.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21235]
gi|341840537|gb|EGS82040.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21235]
Length = 331
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQVEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|113475767|ref|YP_721828.1| peptide chain release factor 2 [Trichodesmium erythraeum IMS101]
gi|110166815|gb|ABG51355.1| bacterial peptide chain release factor 2 (bRF-2) [Trichodesmium
erythraeum IMS101]
Length = 288
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 156/272 (57%), Gaps = 6/272 (2%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L A ++++ LDQ+E+ +LL G D GA VTI AG+ G + WAE LL M
Sbjct: 6 DESLLAEANLTIANLNQELDQWELQQLLSGLYDQNGAVVTINAGAGGTDAQDWAEMLLRM 65
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y RW ++ Y+ ++ + G+KSAT+E YA+GYL E G H L+ N +
Sbjct: 66 YTRWGEEHKYKVQLAEISEGDEAGLKSATLEIIGRYAYGYLKAEKGTHRLVRISPFNANG 125
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGI 228
+ + A V+V+P+ L+ S +L I ++DL ++ G+ Q++ K ++ HIPTG+
Sbjct: 126 KRQTSFAGVEVMPI-LDHSVELDIPEKDLEITTSRSGGKGGQNVNKVETAVRVVHIPTGL 184
Query: 229 AVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHP 288
+V+ ER+ NK KAL LKA+LL+I EQ ++ I+ + + W + R YV HP
Sbjct: 185 SVRCTQERSQLQNKDKALALLKARLLIIAQEQRAQEINEIRGDMVEAAWGNQIRNYVFHP 244
Query: 289 YKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
Y++V+D++T + N V++G + FIEA++
Sbjct: 245 YQMVKDLRTQKETTAINDVMNGELDQFIEAYL 276
>gi|386840528|ref|YP_006245586.1| peptide chain release factor 2 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100829|gb|AEY89713.1| peptide chain release factor 2 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793821|gb|AGF63870.1| peptide chain release factor 2 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 368
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAEEEN-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELIETSYAEEAGIKSTTFAVHSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ ++
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQNE 367
>gi|354613403|ref|ZP_09031324.1| Peptide chain release factor 2 [Saccharomonospora paurometabolica
YIM 90007]
gi|353222233|gb|EHB86550.1| Peptide chain release factor 2 [Saccharomonospora paurometabolica
YIM 90007]
Length = 368
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 169/324 (52%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + + DLR + + ++ +LA E D A
Sbjct: 43 DLWNDPDAAQKVTSRLSHQQGALRKVTDLRQRVNDLSVLHELAVAEG-DAASRAEADTEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++++ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AELTREIDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
R+ D + G++SAT + E YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 RIYDISYAEEAGIRSATFKVEASYAYGTLSVEQGTHRLVRISPFDNQNRRQTSFAHVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E ++I ++D+ ++ S G+ + A I H+PTG+ V E++
Sbjct: 222 PEVAEVD-HVEIPEKDIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGVVVSCQNEKSQLQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A++ L+AKLL E+ + + ++ + W + R YV HPY+LV+D++T +
Sbjct: 281 NKAVAMSVLQAKLLQRKKEEERAELDALRDSG--SSWGNQMRSYVLHPYQLVKDLRTEHE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ +VL+G I F++A I R+
Sbjct: 339 TGNPTAVLEGEIDRFLDAGIRWRK 362
>gi|116671212|ref|YP_832145.1| peptide chain release factor 2 [Arthrobacter sp. FB24]
gi|229576665|sp|A0JYC5.1|RF2_ARTS2 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|116611321|gb|ABK04045.1| bacterial peptide chain release factor 2 (bRF-2) [Arthrobacter sp.
FB24]
Length = 371
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 166/323 (51%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 NLWDDPAAAQKITSRLSHRQSELERLNTLVSRIDDLEVLVELGQDED-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 ESIRKSLKDLEVVTLLSGEFDEREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT E YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TIMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D ++ +F S G+ + A + HIPTG V E++
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVVSMQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL L+++LL++ EQ + + + W + R YV +PY++V+D++T +
Sbjct: 282 NRAAALRVLQSRLLLLKKEQEDAEKKAFAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++V DG I FI+A I R
Sbjct: 341 VGNTSAVFDGEIDDFIDAGIRWR 363
>gi|403253475|ref|ZP_10919776.1| peptide chain release factor 2 [Thermotoga sp. EMP]
gi|402811009|gb|EJX25497.1| peptide chain release factor 2 [Thermotoga sp. EMP]
Length = 367
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 172/328 (52%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWNDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVELQPGEEAGIKDATILIKGEYAYGYLKYESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 221 PE-IDDDVDIEIKPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL LKAKL + E+ + I+ E W + R Y+ HPY +V+D +TG++
Sbjct: 280 NKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVE 339
Query: 301 LPDFNSVLDGNIKPFIEAHI--NSRRSS 326
+ ++V+DG+I FIEA + +RRSS
Sbjct: 340 TANVDAVMDGDIDMFIEAELVYFARRSS 367
>gi|359778302|ref|ZP_09281571.1| peptide chain release factor 2 [Arthrobacter globiformis NBRC
12137]
gi|359304219|dbj|GAB15400.1| peptide chain release factor 2 [Arthrobacter globiformis NBRC
12137]
Length = 359
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 166/323 (51%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + +L+ + L L + ++ +++ +L + E D A
Sbjct: 32 DLWDDPAAAQVITSRLSHRQSELERLNTLASRIDDLEVLVELGQDED-DADSMGEAEAEL 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 91 ESIRKSLKDLEVVTLLSGEYDEREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYPT 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E YAFG LS E G H L+ + + + A V+V+
Sbjct: 151 TVMDTSYAEEAGLKSATFEVNAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 210
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D ++ +F S G+ + A + HIPTG V E++
Sbjct: 211 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVVSMQNEKSQLQ 269
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + W + R YV +PY++V+D++T +
Sbjct: 270 NRAAAMRVLQSRLLLLKKEQEDAEKKAFAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 328
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++VLDG I FIEA I R
Sbjct: 329 VGNTSAVLDGAIDDFIEAGIRWR 351
>gi|418581468|ref|ZP_13145549.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418891396|ref|ZP_13445513.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418897171|ref|ZP_13451244.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418900141|ref|ZP_13454200.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418908547|ref|ZP_13462555.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG149]
gi|418916619|ref|ZP_13470580.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418922423|ref|ZP_13476340.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418981657|ref|ZP_13529372.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985295|ref|ZP_13532984.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377705223|gb|EHT29531.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377707137|gb|EHT31431.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377707477|gb|EHT31770.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377711695|gb|EHT35924.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377732353|gb|EHT56404.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377735746|gb|EHT59776.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377751124|gb|EHT75058.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377755886|gb|EHT79784.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG149]
gi|377761950|gb|EHT85819.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 330
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 165/327 (50%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 KTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|189425791|ref|YP_001952968.1| hypothetical protein Glov_2735 [Geobacter lovleyi SZ]
gi|189422050|gb|ACD96448.1| hypothetical protein Glov_2735 [Geobacter lovleyi SZ]
Length = 372
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 164/316 (51%), Gaps = 8/316 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP+ S ++L K K++ + L +A++ +++ +L E E+ D ++ +
Sbjct: 44 FWDDPSGSQDILKKRTVIEKLLQSWDSLNRQADDVRVMIELGE-ESSDEDTLTEVHQMNE 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +++ E ++L G +D G V++ +G+ G + WA LL M +R+ +K+G++
Sbjct: 103 RLKSGVEEAEFQRMLSGTHDRNGCFVSVNSGAGGTESQDWANMLLRMLLRYCEKKGWKAV 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D + G+KSAT E+A+G+L E G H L+ F + + H + A V V
Sbjct: 163 ITDYQDGEEAGLKSATFSVSGEFAYGHLKAEAGVHRLVRLSPFDSNNRRH-TSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E D++I+D DL + S G+ + A I H+PT I V ER+
Sbjct: 222 PEIEEEDIDIRIADSDLRVDTYRSSGSGGQHVNTTDSAVRITHLPTNIVVACQSERSQIL 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+AKL E+ + S I E W + R YV HPYK+V+D++TG++
Sbjct: 282 NRATAMKVLRAKLYEKEMEERNAKASEIAGEKREIGWGSQIRSYVLHPYKMVKDLRTGVE 341
Query: 301 LPDFNSVLDGNIKPFI 316
+ +SVLDG + F+
Sbjct: 342 SGNPDSVLDGALDDFV 357
>gi|148267214|ref|YP_001246157.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JH9]
gi|151220935|ref|YP_001331757.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|221141228|ref|ZP_03565721.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315812|ref|ZP_04839025.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253732798|ref|ZP_04866963.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TCH130]
gi|258418241|ref|ZP_05682506.1| peptide chain release factor 2 [Staphylococcus aureus A9763]
gi|258430733|ref|ZP_05688445.1| peptide chain release factor 2 [Staphylococcus aureus A9299]
gi|258440954|ref|ZP_05690789.1| peptide chain release factor 2 [Staphylococcus aureus A8115]
gi|258445784|ref|ZP_05693961.1| peptide chain release factor 2 [Staphylococcus aureus A6300]
gi|258449595|ref|ZP_05697697.1| peptide chain release factor 2 [Staphylococcus aureus A6224]
gi|258452962|ref|ZP_05700956.1| peptide chain release factor 2 [Staphylococcus aureus A5948]
gi|258453995|ref|ZP_05701967.1| peptide chain release factor 2 [Staphylococcus aureus A5937]
gi|269202375|ref|YP_003281644.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED98]
gi|282895050|ref|ZP_06303271.1| peptide chain release factor 2 [Staphylococcus aureus A8117]
gi|282916096|ref|ZP_06323859.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
D139]
gi|282922051|ref|ZP_06329748.1| peptide chain release factor 2 [Staphylococcus aureus A9765]
gi|282926620|ref|ZP_06334250.1| peptide chain release factor 2 [Staphylococcus aureus A10102]
gi|283769917|ref|ZP_06342809.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
H19]
gi|297208519|ref|ZP_06924948.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300912611|ref|ZP_07130054.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381625|ref|ZP_07364275.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014042|ref|YP_005290278.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VC40]
gi|384549614|ref|YP_005738866.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384861422|ref|YP_005744142.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|386728520|ref|YP_006194903.1| peptide chain release factor 2 (RF-2) [Staphylococcus aureus subsp.
aureus 71193]
gi|404478154|ref|YP_006709584.1| peptide chain release factor 2 [Staphylococcus aureus 08BA02176]
gi|415689250|ref|ZP_11452649.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS01]
gi|415693279|ref|ZP_11455112.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS03]
gi|416842496|ref|ZP_11905045.1| peptide chain release factor 2 [Staphylococcus aureus O11]
gi|417650425|ref|ZP_12300196.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21189]
gi|417652465|ref|ZP_12302212.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21172]
gi|417655111|ref|ZP_12304825.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21193]
gi|417802439|ref|ZP_12449497.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21318]
gi|417890507|ref|ZP_12534580.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21200]
gi|417892399|ref|ZP_12536449.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21201]
gi|417900179|ref|ZP_12544074.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21259]
gi|418979251|ref|ZP_13527048.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Staphylococcus
aureus subsp. aureus DR10]
gi|422746643|ref|ZP_16800574.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|147740283|gb|ABQ48581.1| bacterial peptide chain release factor 2 (bRF-2) [Staphylococcus
aureus subsp. aureus JH9]
gi|150373735|dbj|BAF66995.1| peptide chain release factor 2, programmed frameshift
[Staphylococcus aureus subsp. aureus str. Newman]
gi|253729163|gb|EES97892.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TCH130]
gi|257839034|gb|EEV63513.1| peptide chain release factor 2 [Staphylococcus aureus A9763]
gi|257849405|gb|EEV73375.1| peptide chain release factor 2 [Staphylococcus aureus A9299]
gi|257852468|gb|EEV76389.1| peptide chain release factor 2 [Staphylococcus aureus A8115]
gi|257855360|gb|EEV78298.1| peptide chain release factor 2 [Staphylococcus aureus A6300]
gi|257857103|gb|EEV80002.1| peptide chain release factor 2 [Staphylococcus aureus A6224]
gi|257859473|gb|EEV82327.1| peptide chain release factor 2 [Staphylococcus aureus A5948]
gi|257863860|gb|EEV86616.1| peptide chain release factor 2 [Staphylococcus aureus A5937]
gi|262074665|gb|ACY10638.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED98]
gi|282320044|gb|EFB50391.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
D139]
gi|282591513|gb|EFB96585.1| peptide chain release factor 2 [Staphylococcus aureus A10102]
gi|282593709|gb|EFB98701.1| peptide chain release factor 2 [Staphylococcus aureus A9765]
gi|282762546|gb|EFC02685.1| peptide chain release factor 2 [Staphylococcus aureus A8117]
gi|283460064|gb|EFC07154.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
H19]
gi|296886774|gb|EFH25678.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300886857|gb|EFK82059.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH70]
gi|302332463|gb|ADL22656.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302750651|gb|ADL64828.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304339988|gb|EFM05932.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315129439|gb|EFT85432.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS03]
gi|315196430|gb|EFU26781.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS01]
gi|320139911|gb|EFW31772.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|323438713|gb|EGA96454.1| peptide chain release factor 2 [Staphylococcus aureus O11]
gi|329723780|gb|EGG60308.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21189]
gi|329724575|gb|EGG61082.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21172]
gi|329729572|gb|EGG65973.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21193]
gi|334274439|gb|EGL92757.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21318]
gi|341842951|gb|EGS84184.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21259]
gi|341854642|gb|EGS95508.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21200]
gi|341857861|gb|EGS98671.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21201]
gi|374362739|gb|AEZ36844.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VC40]
gi|379992930|gb|EIA14379.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Staphylococcus
aureus subsp. aureus DR10]
gi|384229813|gb|AFH69060.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Staphylococcus
aureus subsp. aureus 71193]
gi|404439643|gb|AFR72836.1| peptide chain release factor 2 [Staphylococcus aureus 08BA02176]
gi|408423142|emb|CCJ10553.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408425132|emb|CCJ12519.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408427120|emb|CCJ14483.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408429107|emb|CCJ26272.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408431095|emb|CCJ18410.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408433089|emb|CCJ20374.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408435080|emb|CCJ22340.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408437065|emb|CCJ24308.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
Length = 331
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|184154810|ref|YP_001843150.1| peptide chain release factor 2 [Lactobacillus fermentum IFO 3956]
gi|183226154|dbj|BAG26670.1| peptide chain release factor 2 [Lactobacillus fermentum IFO 3956]
Length = 355
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 28 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 81
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 82 LDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 141
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 142 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 200
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI S
Sbjct: 201 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVTSSQA 259
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N++ A+N LK+KL + E+ + I+ E W + R YV HPY LV+D
Sbjct: 260 ERSQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQKEIGWGSQIRSYVFHPYTLVKD 319
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
+TG + D V+DG++ PFI A++
Sbjct: 320 ARTGYETHDVVGVMDGDLDPFINAYL 345
>gi|410458996|ref|ZP_11312750.1| peptide chain release factor 2 [Bacillus azotoformans LMG 9581]
gi|409930702|gb|EKN67697.1| peptide chain release factor 2 [Bacillus azotoformans LMG 9581]
Length = 327
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 164/335 (48%), Gaps = 27/335 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD + +V+ + NALKD+ E L +E + + L K Y
Sbjct: 5 NFWDDQQAAQQVINE-------TNALKDI--VGEYTALNESFDNLE-VTHELLKEEYDED 54
Query: 66 LD---------VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
L +S+ + Q+E+ LL P D A + + G+ G + W LL MY R
Sbjct: 55 LQKELEKEIKTLSESVSQFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSLLLRMYTR 114
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPH 173
WA+K+G++ +D G+KS T+ + A+GYL E G H L+ F H
Sbjct: 115 WAEKKGFKVETLDYLAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRH 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ ++C DV+P F E ++++ D DL + S G+ + A I H+PTGI V
Sbjct: 175 TSFVSC-DVMPEFNE-EIEIEVRDADLKIDTYRSTGAGGQHINTTDSAVRITHLPTGIVV 232
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ N+ +A+ LKAKL E+ + + I+ E W + R YV HPY
Sbjct: 233 TCQSERSQIKNREQAMKMLKAKLYQKKIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYS 292
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
LV+D +T +++ + +V+DG I PFI+A++ SR S
Sbjct: 293 LVKDHRTNVEIGNTQAVVDGEIDPFIDAYLRSRLS 327
>gi|404330086|ref|ZP_10970534.1| peptide chain release factor 2 [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 325
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 168/321 (52%), Gaps = 11/321 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +V+ + + + V+ L L K E+ ++ +L + E D K ASL
Sbjct: 4 FWDDNGKAQKVIDESNELKEKVDNLGKLEEKFEDLQVAYELVKEE--DDADLKTELEASL 61
Query: 67 -DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ SK ++YE LL GP+D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 62 GEASKAFNRYENRLLLSGPHDKSNAILELHPGAGGTEAQDWASMLLRMYTRWAESHGYQV 121
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D GVKS T+ + A+GYL E G H L+ F H + ++C +V
Sbjct: 122 ETLDYLPGDEAGVKSVTLLIKGLDAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EV 180
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P ++ + D+++ ED+ +F S G+ + A + HIPTGI V ER+ F
Sbjct: 181 TPE-IDDTIDIEVRPEDVKMEVFRSSGAGGQHINKTSSAVRLIHIPTGIVVSCQSERSQF 239
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ LK++L + E+ + + + E W + R YV HPY +V+D +T +
Sbjct: 240 QNRDQAMKMLKSRLYQLEEEKREAEKAALHGEQKEIGWGSQIRSYVFHPYSMVKDHRTNV 299
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
++ D N V+DG++ PFI+A++
Sbjct: 300 EVGDVNRVMDGDLDPFIDAYL 320
>gi|269795803|ref|YP_003315258.1| peptide chain release factor 2 [Sanguibacter keddieii DSM 10542]
gi|269097988|gb|ACZ22424.1| bacterial peptide chain release factor 2 (bRF-2) [Sanguibacter
keddieii DSM 10542]
Length = 372
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 175/330 (53%), Gaps = 15/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME--AIDYGLFKRAYR 63
+LWDD + +V L+ + ++ + ++ + ++ +++ ++A A D + A +
Sbjct: 44 DLWDDTDAAQKVTTALSQAQTELDRIVNMESRIDDLEVLVEMATEGDGADDVETLEEAQK 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + L E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 104 DLDGIRRDLGDLEVRTLLSGEWDAREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+
Sbjct: 164 PTAVLDTSYAEEAGLKSATFEVKAPYAFGNLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E++ + I D ++ +F S G+ + A + HIPTGI V E++
Sbjct: 224 VIPL-IESTDHVDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVVSMQNEKSQ 282
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A+ L+++LL+ + + +K+E ++ W + R YV PY++V+D+
Sbjct: 283 IQNRAAAMRVLQSRLLL----ERQAQEKAMKKEMAGDVKASWGDQMRSYVLQPYQMVKDL 338
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+T ++ + ++V DG I FIEA I RRS
Sbjct: 339 RTEHEVGNTSAVFDGEIDDFIEAGIRWRRS 368
>gi|228474266|ref|ZP_04059001.1| peptide chain release factor 2 [Staphylococcus hominis SK119]
gi|314936947|ref|ZP_07844294.1| peptide chain release factor 2 [Staphylococcus hominis subsp.
hominis C80]
gi|228271625|gb|EEK12972.1| peptide chain release factor 2 [Staphylococcus hominis SK119]
gi|313655566|gb|EFS19311.1| peptide chain release factor 2 [Staphylococcus hominis subsp.
hominis C80]
Length = 332
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 167/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K +VN +L +K E+ +L + E D + +
Sbjct: 1 MMTEPDFWDNQNKAQDVIDKNNALKSIVNGYYELNHKLEDMDATWELLQ-EEYDDEIKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEQDIVSFREQIDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ +D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 QGFKIETIDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPEFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIEA++ S +
Sbjct: 300 RTNEETAKVDAVMDGDIAPFIEAYLRQTMSQN 331
>gi|227832559|ref|YP_002834266.1| peptide chain release factor 2 [Corynebacterium aurimucosum ATCC
700975]
gi|262183572|ref|ZP_06042993.1| peptide chain release factor 2 [Corynebacterium aurimucosum ATCC
700975]
gi|254790912|sp|C3PES4.1|RF2_CORA7 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|227453575|gb|ACP32328.1| peptide chain release factor RF-2 [Corynebacterium aurimucosum ATCC
700975]
Length = 368
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 170/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L LR + E+ ++++LAE E D +
Sbjct: 43 SLWDDPDHAQKVTSELSAQQAKLRKLNSLRGRIEDLPVMSELAEEEG-DEASQELVETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 102 KELGAAIESLEVTTMLSGEYDEREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 162 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + +++ D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 PV-VEQTDSIEVPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 281 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D + VLDG+I F+E+ I R
Sbjct: 340 VGDPSKVLDGDIDGFLESGIRWR 362
>gi|49485626|ref|YP_042847.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650094|ref|YP_185692.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
COL]
gi|150393263|ref|YP_001315938.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JH1]
gi|387142448|ref|YP_005730841.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TW20]
gi|56749392|sp|Q6GB76.1|RF2_STAAS RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|56749443|sp|Q7A6R4.2|RF2_STAAN RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|56749454|sp|Q99VM1.2|RF2_STAAM RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|71153100|sp|Q5HHR5.1|RF2_STAAC RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|115311853|sp|Q2YSH5.2|RF2_STAAB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|189040005|sp|A6TZN3.1|RF2_STAA2 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|49244069|emb|CAG42495.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284280|gb|AAW36374.1| peptide chain release factor 2, programmed frameshift
[Staphylococcus aureus subsp. aureus COL]
gi|149945715|gb|ABR51651.1| hypothetical protein SaurJH1_0795 [Staphylococcus aureus subsp.
aureus JH1]
gi|269940331|emb|CBI48708.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TW20]
Length = 369
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>gi|418567878|ref|ZP_13132239.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21272]
gi|371981376|gb|EHO98557.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21272]
Length = 330
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 167/328 (50%), Gaps = 8/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C DV
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 182
Query: 183 VPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 183 IPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQI 242
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T
Sbjct: 243 KNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNE 302
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ ++V+DG+I PFIE+++ S D
Sbjct: 303 ETGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|227514375|ref|ZP_03944424.1| peptide chain release factor RF2 [Lactobacillus fermentum ATCC
14931]
gi|227087241|gb|EEI22553.1| peptide chain release factor RF2 [Lactobacillus fermentum ATCC
14931]
Length = 355
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 28 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 81
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 82 LDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 141
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 142 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 200
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI S
Sbjct: 201 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVTSSQA 259
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N++ A+N LK+KL + E+ + I+ E W + R YV HPY LV+D
Sbjct: 260 ERSQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQREIGWGSQIRSYVFHPYTLVKD 319
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
+TG + D V+DG++ PFI A++
Sbjct: 320 ARTGYETHDVIGVMDGDLDPFINAYL 345
>gi|429194272|ref|ZP_19186373.1| peptide chain release factor 2 [Streptomyces ipomoeae 91-03]
gi|428670028|gb|EKX68950.1| peptide chain release factor 2 [Streptomyces ipomoeae 91-03]
Length = 368
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAEEED-DPDTRAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ASVKKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++ +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRNNYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|300783176|ref|YP_003763467.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei U32]
gi|384146402|ref|YP_005529218.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
gi|399535062|ref|YP_006547724.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
gi|299792690|gb|ADJ43065.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei U32]
gi|340524556|gb|AEK39761.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
gi|398315832|gb|AFO74779.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
Length = 357
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 167/329 (50%), Gaps = 15/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V +L+ + + DLR + ++ ++ +LAE E D G A
Sbjct: 35 NLWDDPEAAQKVTSQLSHRQGELRRVSDLRQRLDDLGVLYELAEAEG-DSGSMAEAEAEL 93
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY
Sbjct: 94 TDLGKAIDGLEVRTLLSGEYDDRNAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYPT 153
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G+KSAT + Y +G LS E G H L+ F N SF H L
Sbjct: 154 DVYDISYAEEAGIKSATFKVSAPYVYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 213
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+ V D+++ ++ S G+ + A I H+PTGI V E++
Sbjct: 214 PEVEEVDHVDVAEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKS 269
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+A+L++ E+ + + ++ + W + R YV HPY++V+D++T
Sbjct: 270 QLQNKAAAMKVLQARLMLRKKEEERAEMDALRDGG--SSWGNQMRSYVLHPYQMVKDLRT 327
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
++ + +VLDG+I F++A I R S
Sbjct: 328 DYEVGNPTAVLDGDIDGFLDAGIRWRMRS 356
>gi|153956213|ref|YP_001396978.1| peptide chain release factor 2 [Clostridium kluyveri DSM 555]
gi|219856538|ref|YP_002473660.1| hypothetical protein CKR_3195 [Clostridium kluyveri NBRC 12016]
gi|146349071|gb|EDK35607.1| PrfB [Clostridium kluyveri DSM 555]
gi|219570262|dbj|BAH08246.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 328
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 164/323 (50%), Gaps = 7/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W+D + ++ + + +N L + E+A+++ ++ + E D F+ +
Sbjct: 5 NFWNDIDNAQKIASEEKNLEGRLNRYDLLSHNIEDARILLEIIKEEE-DSMSFQEVMKDI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ ++ + LL G D A + + G G + W E LL MY+RWA+K GY+
Sbjct: 64 KDIEFQVEIFRTEILLCGEYDKNNAILNLHVGVGGTDAQDWTEMLLRMYIRWAEKMGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D ++ G+KS ++ E+A+GYL E G H L+ N + + + A V+V+
Sbjct: 124 NIIDMLEAEDAGIKSVSLSIIGEFAYGYLKSEKGIHRLVRISPFNANGKRQTSFASVEVL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L D++I EDL F + G+ + + A I HIPTGI VQ ER+
Sbjct: 184 PE-LTGDQDIEIRSEDLKVDTFRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQHY 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK +AL LKAKL+ + + + E W + R YV HPY LV+D +TG++
Sbjct: 243 NKEQALKILKAKLVELKERAHKDRIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHRTGVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ +SV+DG+I FI+ ++ +
Sbjct: 303 SSNVSSVMDGDIDNFIKGYLKQQ 325
>gi|417796172|ref|ZP_12443388.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21305]
gi|334270036|gb|EGL88444.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21305]
Length = 331
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYHLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|333896506|ref|YP_004470380.1| hypothetical protein Thexy_0660 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111771|gb|AEF16708.1| hypothetical protein Thexy_0660 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 365
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 165/327 (50%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K E+ K D ++++ + L + E+ + +L +E D L + +
Sbjct: 43 DFWNDLEKFQELSKKQKDLKEIISEYEALEKQWEDLHTLIELG-LEEGDESLSQEVHEEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK ++ ++ LL GP D A ++I AG+ G + W E LL MY+RWA + Y
Sbjct: 102 KALSKKINDMKIKTLLSGPYDKNNAILSIHAGAGGTEAQDWTEMLLRMYMRWASSKNYDV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD + GVKS TI + +A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETVDYLPGDDAGVKSVTIMVKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVL 221
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
P E D++ I EDL + S G+ + + A I HIPTGI VQ ER+
Sbjct: 222 P---EIDDDIKVDIRPEDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGIIVQCQTERSQ 278
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ LKAKL+ ++ ++ + +K E W + R YV PY LV+D +T
Sbjct: 279 MQNRETAMKMLKAKLMDMMIKEQKEKIEDLKGEHKEAGWGNQIRSYVFQPYTLVKDHRTN 338
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + N+V+DG I FI A++ + S
Sbjct: 339 FEVGNVNAVMDGEIDDFINAYLKQKVS 365
>gi|302671676|ref|YP_003831636.1| peptide chain release factor 2 PrfB [Butyrivibrio proteoclasticus
B316]
gi|302396149|gb|ADL35054.1| peptide chain release factor 2 PrfB [Butyrivibrio proteoclasticus
B316]
Length = 380
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 155/320 (48%), Gaps = 7/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+N+ L + +V ++ L + + + + E +D R+ L
Sbjct: 46 FWDNAEKANKKTKDLKNMQDLVADIERLNSQYTDIIDLIDMQNAEGVDDDDMAAEIRSEL 105
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + L+ +S LL P D + + AG+ G WA L MY RWA+++G+
Sbjct: 106 DEFEEKLENIRISNLLNQPYDKYDVILRLNAGAGGTEACDWASMLYRMYTRWAERKGFTT 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + A+G L E G H L+ N + + DV+
Sbjct: 166 EVLDLLDGDEAGIKSVTFQISGTNAYGLLKSEHGVHRLVRISPFNAQAKRQTSFVSCDVM 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I+ +DL + S G+ + A I HIPTG+ V ER+ F
Sbjct: 226 P-DIEEDLDIEINPDDLRIDTYRSSGAGGQHINKTSSAVRITHIPTGVVVACQNERSQFQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ E+ + ++ I+ E + N W + R YV PY +V D +TG +
Sbjct: 285 NKDKAMQMLKAKLFIMKQEEQAAKLAGIRGEVMDNAWGSQIRSYVLQPYTMVNDTRTGFK 344
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + VLDG + PFI A++
Sbjct: 345 ASNADGVLDGELDPFINAYL 364
>gi|385811987|ref|YP_005848378.1| peptide chain release factor RF2 [Lactobacillus fermentum CECT
5716]
gi|299782886|gb|ADJ40884.1| Peptide chain release factor RF2 [Lactobacillus fermentum CECT
5716]
Length = 332
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 164/327 (50%), Gaps = 19/327 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 5 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 58
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 59 LDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 119 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 177
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI S
Sbjct: 178 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVTSSQA 236
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N++ A+N LK+KL + E+ + I+ E W + R YV HPY LV+D
Sbjct: 237 ERSQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQREIGWGSQIRSYVFHPYTLVKD 296
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHIN 321
+TG + D V+DG++ PFI A++
Sbjct: 297 ARTGYETHDVIGVMDGDLDPFINAYLQ 323
>gi|150015324|ref|YP_001307578.1| peptide chain release factor 2 [Clostridium beijerinckii NCIMB
8052]
gi|149901789|gb|ABR32622.1| peptide chain release factor 2 [Clostridium beijerinckii NCIMB
8052]
Length = 324
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 155/322 (48%), Gaps = 8/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ EV K + + L+ + E+ +++ ++ ME D +
Sbjct: 6 FWDNIKKAEEVTKKSKSIKDKIESFDKLKSQIEDIEVLKEI--MEDDDEESANEIIQTLR 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ +D Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 DIQAQIDDYNMKVLLCGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSIE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 124 TLDLLPGDEAGIKSVTLKVTGEYAYGYLKAEKGIHRLVRISPYNANGKRQTSFASMEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L D++I +DL + S G+ + A I HIPTG+ VQ ER+ F+N
Sbjct: 184 -ELTKEQDIEIRSDDLKIDTYRSGGAGGQHVNKTDSAVRITHIPTGVVVQCQNERSQFSN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 243 RDTAMEMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ SV+DG I FI A++ +
Sbjct: 303 SNVTSVMDGEIDMFINAYLKQQ 324
>gi|418283228|ref|ZP_12895982.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21202]
gi|365168015|gb|EHM59374.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21202]
Length = 330
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 164/327 (50%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|406926880|gb|EKD63006.1| hypothetical protein ACD_52C00001G0007, partial [uncultured
bacterium]
Length = 332
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 162/322 (50%), Gaps = 13/322 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW D + + ++ K+ D K + ++ L + + L+E ++ GL + A + +
Sbjct: 15 DLWKDQSYARSLMQKIGDIKKQILQVERL---TTDVSGLVDLSEDGSLVSGLDEEANKLA 71
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +Q E+ L GP D A V I G G WA+ LL MY+R+ ++ Y
Sbjct: 72 GEI----EQLELVIYLNGPYDTRNAIVAIHPGQGGTEAMDWAQMLLRMYLRFCERWNYAT 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS + +A+GYL GE G H L+ N + + A V+V+
Sbjct: 128 QVIDDTPGEEAGIKSVVFKVGGPHAYGYLKGEAGTHRLVRQSPFNADKLRQTSFALVEVL 187
Query: 184 PLFLETS-PDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P +E PD++I D DL F S S G+ A + H PTGI V S ER
Sbjct: 188 PDLVEVDLPDIEIKDSDLEWQFFHSSSQGGQNVQKVSTAVRLTHKPTGIVVTSQRERFQE 247
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
AN+ AL L++KL + E+ S +K E W + R YV HPYK+V+D++T +
Sbjct: 248 ANRKLALGLLRSKLWIKKQEELTSEKRSLKGEWSPASWGTQIRSYVLHPYKMVKDLRTSV 307
Query: 300 QLPDFNSVLDGNIKPFIEAHIN 321
+ D ++VLDG I FIE+ +
Sbjct: 308 ETSDTDAVLDGKIDEFIESQLK 329
>gi|258421538|ref|ZP_05684463.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9719]
gi|258423403|ref|ZP_05686294.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9635]
gi|257842464|gb|EEV66888.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9719]
gi|257846464|gb|EEV70487.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9635]
Length = 352
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 22 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 80
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 81 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 140
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 141 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 200
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 201 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 260
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 261 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 320
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 321 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 352
>gi|306835540|ref|ZP_07468554.1| peptide chain release factor RF2 [Corynebacterium accolens ATCC
49726]
gi|304568597|gb|EFM44148.1| peptide chain release factor RF2 [Corynebacterium accolens ATCC
49726]
Length = 370
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 11/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + ++ ++ +LAE E G A
Sbjct: 46 SLWDDPEHAQKVTSELSSAQAKVRKLESLRGRLDDMPVMYELAEEE----GTVSVADEDL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA K ++
Sbjct: 102 AELESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAGKHDHKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 162 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRLSPFDNQGRRQTSFAEVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + + D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 PV-VEQTDHIDVPDNEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 281 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNFE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D + VLDG+I F+EA I R
Sbjct: 340 MGDPSKVLDGDIDGFLEAGIRWR 362
>gi|347750934|ref|YP_004858499.1| peptide chain release factor 2 [Bacillus coagulans 36D1]
gi|347583452|gb|AEO99718.1| peptide chain release factor 2 [Bacillus coagulans 36D1]
Length = 327
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 169/326 (51%), Gaps = 9/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD ++ +++ + ++VN ++L + E+ ++ +LA+ E D L +
Sbjct: 5 NFWDDQQEAQKIINESNALKEMVNGYRELESQQEDLEVTHELAKEEN-DSELKEELEAEL 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L++YE+ LL GP D A + + G+ G + W LL MY RW +K+G++
Sbjct: 64 EAFTEKLNEYELQLLLNGPYDANNAILELHPGAGGTESQDWCSMLLRMYTRWGEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D GVKS T+ F+ A+GYL E G H L+ F H + ++C +V
Sbjct: 124 ETLDYLPGDEAGVKSVTLLFKGHNAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P ++ + ++++ EDL + + G+ + A I HIPTGI V ER+
Sbjct: 183 MPE-IDDNIEVEVRPEDLRVDTYRASGAGGQHINKTSSAVRITHIPTGIVVSCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ LKAKL E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 242 QNREQAMKMLKAKLYQKEVEEKEKQLAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNV 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG I PFI+A++ + S
Sbjct: 302 ETGNVQAVMDGEIDPFIDAYLRAHIS 327
>gi|227502940|ref|ZP_03932989.1| peptide chain release factor 2 [Corynebacterium accolens ATCC
49725]
gi|227076362|gb|EEI14325.1| peptide chain release factor 2 [Corynebacterium accolens ATCC
49725]
Length = 367
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 11/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + ++ ++ +LAE E G A
Sbjct: 43 SLWDDPEHAQKVTSELSSAQAKVRKLESLRGRLDDMPVMYELAEEE----GTVSVADEDL 98
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA K ++
Sbjct: 99 AELESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAGKHDHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRLSPFDNQGRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + + D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 PV-VEQTDHIDVPDNEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 278 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNFE 336
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D + VLDG+I F+EA I R
Sbjct: 337 MGDPSKVLDGDIDGFLEAGIRWR 359
>gi|260663162|ref|ZP_05864054.1| peptide chain release factor 2 [Lactobacillus fermentum 28-3-CHN]
gi|260552354|gb|EEX25405.1| peptide chain release factor 2 [Lactobacillus fermentum 28-3-CHN]
Length = 332
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 5 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 58
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 59 LDNNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 119 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 177
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI S
Sbjct: 178 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVTSSQA 236
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N++ A+N LK+KL + E+ + I+ E W + R YV HPY LV+D
Sbjct: 237 ERSQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQREIGWGSQIRSYVFHPYTLVKD 296
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
+TG + D V+DG++ PFI A++
Sbjct: 297 ARTGYETHDVIGVMDGDLDPFINAYL 322
>gi|390935721|ref|YP_006393226.1| Peptide chain release factor 2 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389571222|gb|AFK87627.1| Peptide chain release factor 2 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 327
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 165/327 (50%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D KS E+ K D ++++ + L + E+ + +L +E D L + +
Sbjct: 5 DFWSDLEKSQELSKKQKDLKEIISEYEALEKQWEDLHTLIELG-LEEGDESLSQEVHDEY 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK ++ ++ LL GP D A ++I AG+ G + W E LL MY+RWA + Y
Sbjct: 64 KALSKKVNDMKIKTLLSGPYDKNNAILSIHAGAGGTEAQDWTEMLLRMYMRWASSKNYDV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD + GVKS TI + +A+GYL E G H L+ + + + A V+V+
Sbjct: 124 ETVDYLPGDDAGVKSVTIMVKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVL 183
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
P E D++ I EDL + S G+ + + A I H+PTGI VQ ER+
Sbjct: 184 P---EIDDDIKVDIRPEDLKIDTYRSSGAGGQHVNKTESAIRITHLPTGIIVQCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ LKAKL+ ++ ++ + +K E W + R YV PY LV+D +T
Sbjct: 241 MQNRETAMKMLKAKLMDMMIKEQKEKIEDLKGEHKEAGWGNQIRSYVFQPYTLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + N+V+DG I FI A++ + S
Sbjct: 301 FEVGNVNAVMDGEIDDFINAYLKQKVS 327
>gi|387779889|ref|YP_005754687.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
LGA251]
gi|344176991|emb|CCC87455.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
LGA251]
Length = 369
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKALQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>gi|404257492|ref|ZP_10960817.1| peptide chain release factor 2 [Gordonia namibiensis NBRC 108229]
gi|403403887|dbj|GAB99226.1| peptide chain release factor 2 [Gordonia namibiensis NBRC 108229]
Length = 373
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 176/332 (53%), Gaps = 17/332 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + E+ + +LA+ E G K A A
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVHYELADAEE---GEDKTAALAD 101
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++
Sbjct: 102 ADEERASLRADIEAMEVKTMLAGEYDSREAVVNIRSGAGGVDAADWAQMLMRMYIRWAER 161
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+GY V D + G+KSAT + Y +G LS E G H L+ F N S + +
Sbjct: 162 KGYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSF 220
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 221 AEVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQN 279
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
E++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D
Sbjct: 280 EKSQLQNKASAMRVLQAKLLERKRQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKD 338
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
++TG++ + +VLDG + FIEA I R +S
Sbjct: 339 LRTGVEDNNPTAVLDGELDKFIEAGIRWRMAS 370
>gi|257424874|ref|ZP_05601301.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427542|ref|ZP_05603941.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430173|ref|ZP_05606557.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
68-397]
gi|257432874|ref|ZP_05609234.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
E1410]
gi|257435778|ref|ZP_05611826.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M876]
gi|282913594|ref|ZP_06321383.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M899]
gi|282918547|ref|ZP_06326284.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C427]
gi|282923513|ref|ZP_06331193.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C101]
gi|283957586|ref|ZP_06375039.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293500640|ref|ZP_06666491.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
58-424]
gi|293509587|ref|ZP_06668298.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M809]
gi|293524173|ref|ZP_06670860.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M1015]
gi|297590314|ref|ZP_06948953.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus MN8]
gi|384868314|ref|YP_005748510.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH60]
gi|417887266|ref|ZP_12531399.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21195]
gi|257272444|gb|EEV04567.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275735|gb|EEV07208.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279370|gb|EEV09971.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
68-397]
gi|257282289|gb|EEV12424.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
E1410]
gi|257284969|gb|EEV15088.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M876]
gi|282314381|gb|EFB44771.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C101]
gi|282317681|gb|EFB48053.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C427]
gi|282322626|gb|EFB52948.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M899]
gi|283791037|gb|EFC29852.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290921136|gb|EFD98197.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M1015]
gi|291095645|gb|EFE25906.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
58-424]
gi|291467684|gb|EFF10199.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M809]
gi|297576613|gb|EFH95328.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus MN8]
gi|312438819|gb|ADQ77890.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH60]
gi|341858319|gb|EGS99116.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21195]
Length = 331
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|399923642|ref|ZP_10781000.1| hypothetical protein Prhi1_00305 [Peptoniphilus rhinitidis 1-13]
Length = 371
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 167/328 (50%), Gaps = 9/328 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + +++ + K ++ +L +A+ + +L E+E DY +
Sbjct: 47 FWDDNDSAQKIINETNSYQKKIDQYDELNKLITDAEDLIELMEIEE-DYSSYDDFRNLVE 105
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K +++++ LL G D A ++I AG+ G + WA LL MY R+A+ +G++
Sbjct: 106 EIEKKTTEFKLNTLLNGEYDSHNAILSIHAGAGGTEAQDWASMLLRMYSRYAENKGFKIE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D G+KS T++ + A+GYL GE G H L+ F + H + + VDV
Sbjct: 166 TLDILKEDEAGIKSVTLKISGDNAYGYLKGEKGVHRLVRISPFDSNKRRH-TSFSSVDVF 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ D++I +E+L + S G+ + A I HIPTGI VQ ER+
Sbjct: 225 PE-LDDDTDVEIKEEELKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQNERSQIQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KA+N LKAKL+ + E+ + ++ W + R YV PY +V+D +T I
Sbjct: 284 NREKAMNMLKAKLIALAEEEKKEKIEDLQGNYSQIAWGSQIRSYVFQPYTMVKDHRTNID 343
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ D V+DG++ FI A++ + + ++
Sbjct: 344 VGDVEKVMDGDLDVFINAYLQDKATGES 371
>gi|417904612|ref|ZP_12548434.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21269]
gi|341846518|gb|EGS87710.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21269]
Length = 331
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKALQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|332983173|ref|YP_004464614.1| peptide chain release factor 2 (bRF-2) [Mahella australiensis 50-1
BON]
gi|332700851|gb|AEE97792.1| bacterial peptide chain release factor 2 (bRF-2) [Mahella
australiensis 50-1 BON]
Length = 353
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D +S +V ++ + L+ + K E+ + +A L E D +
Sbjct: 27 SFWSDMERSQKVNQRIKALKDKLQNLRAVEQKWEDLRTLADLGR-EEDDASIVGEVAAEL 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K +++ + LL GP D A VT+ AG+ G + W + L MY RWA+ +GY+
Sbjct: 86 ASLRKEVERLRIETLLSGPYDRNNAIVTLHAGAGGTEAQDWVQMLYRMYTRWAEDKGYKV 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T E E A+GYL E G H L+ + + + A VDV+
Sbjct: 146 EVLDLLEGDEAGIKSVTFLVEGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFASVDVM 205
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ ++I+ EDL + S G+ + + A I HIPTGI VQ ER+ +
Sbjct: 206 P-ELDDDEGVEINPEDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGIVVQCQNERSQHS 264
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ LKAKLL + ++ + +S IK E W + R Y+ PY +V+D +T +
Sbjct: 265 NKETAMKMLKAKLLELKEQEEQAKISDIKGELKRIEWGSQIRSYIFQPYTMVKDHRTNAE 324
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + N+V+DG+I FI ++
Sbjct: 325 IGNVNAVMDGDIDLFISEYL 344
>gi|120402908|ref|YP_952737.1| peptide chain release factor 2 [Mycobacterium vanbaalenii PYR-1]
gi|166225112|sp|A1T6D1.1|RF2_MYCVP RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|119955726|gb|ABM12731.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
vanbaalenii PYR-1]
Length = 368
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 174/330 (52%), Gaps = 14/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD ++ +V L+ + + +++LR + E+ ++ +LA E G A
Sbjct: 43 QLWDDQARAQKVTSDLSHAQGELRRIEELRGRLEDLPVLYELAAEE----GGSDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 99 AELTKLREDIEAMEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHK 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 159 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQNRRQTSFADV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ ET+ ++I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 EVLPV-TETTDHIEIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 278 QLQNKVSAMRVLQAKLLERKRLEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + ++VLDG+I F+EA I R D
Sbjct: 337 EYEVGNPSAVLDGDIDGFLEAGIRWRNRKD 366
>gi|187734757|ref|YP_001876869.1| peptide chain release factor 2 [Akkermansia muciniphila ATCC
BAA-835]
gi|187424809|gb|ACD04088.1| peptide chain release factor 2 [Akkermansia muciniphila ATCC
BAA-835]
Length = 329
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 162/324 (50%), Gaps = 7/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + ++ ++ + A L+ + E+ +LA+ EA D L + A
Sbjct: 5 DFWDDQNAARALMAEVNPLKHRMEAFSALKSRLEDIDAAIELAQ-EADDDDLGREAVEEF 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K L +E+ LL GP D VTI AG+ G WA LL MY+RW ++ G+
Sbjct: 64 ARWQKSLADFELLTLLNGPQDQASCYVTIHAGAGGTEACDWASMLLRMYIRWCERRGFSV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++ + G++S T++ + EYA+GYL E G H L+ + + + A +D
Sbjct: 124 TYLESTDGDDAGIRSVTLKVDGEYAYGYLKNERGIHRLVRISPFDSAGKRHTSFASLDAT 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P + S +++I D+DL + S G+ + + A I HIP+G+ V ER+
Sbjct: 184 PE-VSDSINIEILDKDLKVDTYRSGGKGGQNVNKVETAVRITHIPSGVIVACQNERSQLR 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK +A+N L+AKL I ++ + E W + R YV PY++V+D++TG++
Sbjct: 243 NKEEAMNMLRAKLYQIEEDKKQAEADRQYSEKGDIGWGNQIRSYVFQPYQMVKDLRTGVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ V+DGN+ PFIEA + +
Sbjct: 303 SGNIQDVMDGNLDPFIEAMLRGHK 326
>gi|302872499|ref|YP_003841135.1| hypothetical protein COB47_1880 [Caldicellulosiruptor obsidiansis
OB47]
gi|302575358|gb|ADL43149.1| hypothetical protein COB47_1880 [Caldicellulosiruptor obsidiansis
OB47]
Length = 372
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 172/329 (52%), Gaps = 7/329 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + +
Sbjct: 43 NPDFWQDLENSQKVLQKIKRLKDKIERFQKLCSQWEDLKVLTELS-IEEGNHEMAEELEK 101
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD+ K ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY
Sbjct: 102 ELLDLEKKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGY 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D + G+K+ TI E A+GYL E G H L+ + + + A V+
Sbjct: 162 KVETLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVE 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P +E D++I +EDL F + G+ + + A I+HIPTGI V ER+
Sbjct: 222 VLP-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQ 280
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ AL LKAKLL + ++ + +K E W + R YV PY LV+D +T
Sbjct: 281 HKNREIALKILKAKLLELKEKERREKIQKLKGEQTDIGWGNQIRSYVFCPYTLVKDHRTE 340
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +V+DG I FI A++ R+ +
Sbjct: 341 AEVGNVEAVMDGEIDVFINAYLKKFRNEE 369
>gi|282908140|ref|ZP_06315971.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910399|ref|ZP_06318203.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282325791|gb|EFB56099.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327805|gb|EFB58087.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WW2703/97]
Length = 352
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 22 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 80
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 81 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 140
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 141 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 200
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 201 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 260
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 261 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 320
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 321 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 352
>gi|15923744|ref|NP_371278.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926431|ref|NP_373964.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
N315]
gi|82750458|ref|YP_416199.1| peptide chain release factor 2 [Staphylococcus aureus RF122]
gi|156979082|ref|YP_001441341.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253731382|ref|ZP_04865547.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|255005545|ref|ZP_05144146.2| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794925|ref|ZP_05643904.1| peptide chain release factor 2 [Staphylococcus aureus A9781]
gi|262052329|ref|ZP_06024532.1| peptide chain release factor 2 [Staphylococcus aureus 930918-3]
gi|296275163|ref|ZP_06857670.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MR1]
gi|379020525|ref|YP_005297187.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M013]
gi|384547036|ref|YP_005736289.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED133]
gi|384864079|ref|YP_005749438.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384869340|ref|YP_005752054.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
T0131]
gi|385781080|ref|YP_005757251.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
11819-97]
gi|387149917|ref|YP_005741481.1| Peptide chain release factor 2 [Staphylococcus aureus 04-02981]
gi|387602109|ref|YP_005733630.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST398]
gi|418280783|ref|ZP_12893608.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21178]
gi|418285829|ref|ZP_12898496.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21209]
gi|418308216|ref|ZP_12919859.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21194]
gi|418309566|ref|ZP_12921120.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21331]
gi|418313637|ref|ZP_12925122.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21334]
gi|418315392|ref|ZP_12926856.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21340]
gi|418318355|ref|ZP_12929760.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21232]
gi|418322194|ref|ZP_12933531.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VCU006]
gi|418423897|ref|ZP_12997039.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418426874|ref|ZP_12999895.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418429804|ref|ZP_13002730.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418432700|ref|ZP_13005493.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436415|ref|ZP_13008225.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439312|ref|ZP_13011028.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442290|ref|ZP_13013902.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445418|ref|ZP_13016904.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448357|ref|ZP_13019757.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451178|ref|ZP_13022517.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454200|ref|ZP_13025468.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457104|ref|ZP_13028314.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418560578|ref|ZP_13125091.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21252]
gi|418569746|ref|ZP_13134060.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21283]
gi|418574180|ref|ZP_13138357.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21333]
gi|418578653|ref|ZP_13142748.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418600554|ref|ZP_13164010.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21343]
gi|418639427|ref|ZP_13201674.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-3]
gi|418640930|ref|ZP_13203146.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-24]
gi|418647137|ref|ZP_13209216.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651038|ref|ZP_13213049.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-91]
gi|418654275|ref|ZP_13216188.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-99]
gi|418659140|ref|ZP_13220830.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-111]
gi|418660976|ref|ZP_13222582.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-122]
gi|418872469|ref|ZP_13426808.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-125]
gi|418874775|ref|ZP_13429041.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418877599|ref|ZP_13431838.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418880458|ref|ZP_13434678.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418883384|ref|ZP_13437583.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418886046|ref|ZP_13440196.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418888652|ref|ZP_13442788.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418894210|ref|ZP_13448311.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418903029|ref|ZP_13457070.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418904873|ref|ZP_13458902.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418911431|ref|ZP_13465414.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG547]
gi|418913943|ref|ZP_13467915.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418919626|ref|ZP_13473569.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418924992|ref|ZP_13478895.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418928077|ref|ZP_13481963.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418930787|ref|ZP_13484635.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418933689|ref|ZP_13487513.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418948884|ref|ZP_13501164.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-157]
gi|418952399|ref|ZP_13504429.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-160]
gi|418952673|ref|ZP_13504689.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-189]
gi|418987657|ref|ZP_13535330.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418990644|ref|ZP_13538305.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418993467|ref|ZP_13541104.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG290]
gi|419775539|ref|ZP_14301478.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CO-23]
gi|419784550|ref|ZP_14310314.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-M]
gi|422744898|ref|ZP_16798853.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424775720|ref|ZP_18202711.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CM05]
gi|424784611|ref|ZP_18211421.1| Peptide chain release factor 2 [Staphylococcus aureus CN79]
gi|440706819|ref|ZP_20887541.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21282]
gi|440734234|ref|ZP_20913846.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|443637554|ref|ZP_21121630.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21236]
gi|448741992|ref|ZP_21723948.1| peptide chain release factor 2 [Staphylococcus aureus KT/314250]
gi|448744324|ref|ZP_21726218.1| peptide chain release factor 2 [Staphylococcus aureus KT/Y21]
gi|13700645|dbj|BAB41942.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
N315]
gi|14246523|dbj|BAB56916.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu50]
gi|82655989|emb|CAI80394.1| peptide chain release factor 2 [Staphylococcus aureus RF122]
gi|156721217|dbj|BAF77634.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253724907|gb|EES93636.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257788897|gb|EEV27237.1| peptide chain release factor 2 [Staphylococcus aureus A9781]
gi|259159769|gb|EEW44810.1| peptide chain release factor 2 [Staphylococcus aureus 930918-3]
gi|283470047|emb|CAQ49258.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST398]
gi|285816456|gb|ADC36943.1| Peptide chain release factor 2 [Staphylococcus aureus 04-02981]
gi|298694086|gb|ADI97308.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED133]
gi|312829246|emb|CBX34088.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|320141998|gb|EFW33826.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329313475|gb|AEB87888.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
T0131]
gi|359829834|gb|AEV77812.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M013]
gi|364522069|gb|AEW64819.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365167354|gb|EHM58819.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21178]
gi|365169390|gb|EHM60643.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21209]
gi|365223803|gb|EHM65078.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VCU006]
gi|365235336|gb|EHM76255.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21334]
gi|365238899|gb|EHM79727.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21331]
gi|365240804|gb|EHM81567.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21194]
gi|365243224|gb|EHM83910.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21232]
gi|365244022|gb|EHM84690.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21340]
gi|371971642|gb|EHO89039.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21252]
gi|371980277|gb|EHO97491.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21333]
gi|371985352|gb|EHP02425.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21283]
gi|374393361|gb|EHQ64674.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21343]
gi|375016561|gb|EHS10200.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-99]
gi|375017453|gb|EHS11067.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-3]
gi|375020127|gb|EHS13668.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-24]
gi|375026850|gb|EHS20228.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-91]
gi|375030960|gb|EHS24255.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-88]
gi|375036385|gb|EHS29458.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-111]
gi|375039751|gb|EHS32669.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-122]
gi|375367219|gb|EHS71187.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-125]
gi|375368874|gb|EHS72772.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-160]
gi|375370391|gb|EHS74200.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-157]
gi|375376387|gb|EHS79922.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-189]
gi|377696307|gb|EHT20663.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696680|gb|EHT21035.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377698558|gb|EHT22906.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377716050|gb|EHT40235.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377716654|gb|EHT40836.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377719445|gb|EHT43615.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377722766|gb|EHT46891.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377724809|gb|EHT48924.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG547]
gi|377727344|gb|EHT51451.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377732896|gb|EHT56946.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377737989|gb|EHT61998.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377742044|gb|EHT66029.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377746287|gb|EHT70258.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377746626|gb|EHT70596.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG290]
gi|377754162|gb|EHT78071.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377757445|gb|EHT81333.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766413|gb|EHT90246.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377767151|gb|EHT90964.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377771469|gb|EHT95223.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|377772115|gb|EHT95868.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383363994|gb|EID41319.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-M]
gi|383970762|gb|EID86855.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CO-23]
gi|387720235|gb|EIK08148.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387720486|gb|EIK08396.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387722260|gb|EIK10085.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387726884|gb|EIK14424.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387729085|gb|EIK16551.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS5]
gi|387731393|gb|EIK18701.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS6]
gi|387737592|gb|EIK24657.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS8]
gi|387738825|gb|EIK25842.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS9]
gi|387739267|gb|EIK26275.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387746342|gb|EIK33074.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS10]
gi|387747174|gb|EIK33884.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387748704|gb|EIK35373.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402346795|gb|EJU81871.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CM05]
gi|421957210|gb|EKU09534.1| Peptide chain release factor 2 [Staphylococcus aureus CN79]
gi|436431262|gb|ELP28615.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436506693|gb|ELP42464.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21282]
gi|443405545|gb|ELS64147.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21236]
gi|445547384|gb|ELY15654.1| peptide chain release factor 2 [Staphylococcus aureus KT/314250]
gi|445562327|gb|ELY18503.1| peptide chain release factor 2 [Staphylococcus aureus KT/Y21]
Length = 330
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|418475196|ref|ZP_13044622.1| peptide chain release factor 2 [Streptomyces coelicoflavus ZG0656]
gi|371544193|gb|EHN72927.1| peptide chain release factor 2 [Streptomyces coelicoflavus ZG0656]
Length = 352
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 28 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEED-DPDTRAEAESEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 87 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 147 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 207 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 265
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 266 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 324
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 325 VGNPEAVFNGEIDGFLEAGIRWRKQRE 351
>gi|213965439|ref|ZP_03393634.1| peptide chain release factor 2 [Corynebacterium amycolatum SK46]
gi|213951823|gb|EEB63210.1| peptide chain release factor 2 [Corynebacterium amycolatum SK46]
Length = 370
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 167/323 (51%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRAYRA 64
+LWDDP + +V L+ + + + LR + ++ ++ +LAE E+ D A RA
Sbjct: 43 SLWDDPDHAQQVTSALSQAQAKMKKIDSLRGRLDDLSVMYELAEEESDSDAVEMADAERA 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + ++ E++ +L GP D A + I++G+ G+ WAE L+ MY+RWADK G++
Sbjct: 103 ELRAA--IESLEVTTMLSGPYDEREAVINIRSGAGGVDAADWAEMLMRMYLRWADKHGHK 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ P + T V
Sbjct: 161 VEVYDTSYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRISPFDNQGRRQTSFAEVEV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
+E + + I + DL ++ S G+ + A + H+PTGI V E++
Sbjct: 221 LPVVEETDHIDIPESDLRIDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNEKSQHQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 281 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTEYE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + SVLDG++ FIEA I R
Sbjct: 340 VNNPQSVLDGDLDGFIEAGIRWR 362
>gi|262049538|ref|ZP_06022408.1| peptide chain release factor 2 [Staphylococcus aureus D30]
gi|259162374|gb|EEW46946.1| peptide chain release factor 2 [Staphylococcus aureus D30]
Length = 330
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEYLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|302521474|ref|ZP_07273816.1| peptide chain release factor 2 [Streptomyces sp. SPB78]
gi|318056789|ref|ZP_07975512.1| peptide chain release factor 2 [Streptomyces sp. SA3_actG]
gi|318081122|ref|ZP_07988454.1| peptide chain release factor 2 [Streptomyces sp. SA3_actF]
gi|302430369|gb|EFL02185.1| peptide chain release factor 2 [Streptomyces sp. SPB78]
Length = 371
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA E D + A +
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFELAADEG-DADTQEEAEQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDSREAVVTIRAEAGGVDASDFAERLQRMYLRWAERLGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQEKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|333024883|ref|ZP_08452947.1| putative peptide chain release factor 2 [Streptomyces sp. Tu6071]
gi|332744735|gb|EGJ75176.1| putative peptide chain release factor 2 [Streptomyces sp. Tu6071]
Length = 373
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA E D + A +
Sbjct: 46 SLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFELAADEG-DADTQEEAEQEL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 105 AAVRKALDEMEVRTLLSGEYDSREAVVTIRAEAGGVDASDFAERLQRMYLRWAERLGYKT 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 165 ELYETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 225 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 284 NKASAMNVLQAKLLERRRQEEQEKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 343 VGNPEAVFNGEIDGFLEAGIRWRKQQE 369
>gi|229817216|ref|ZP_04447498.1| hypothetical protein BIFANG_02476 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785005|gb|EEP21119.1| hypothetical protein BIFANG_02476 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 373
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 165/323 (51%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + + L + ++ + + +L + E D A
Sbjct: 44 GLWDDPENAQKVTSRLSAAQSQLKRLNSASQRIDDVETLVELGQEEE-DADTLAEAQEEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++
Sbjct: 103 KKIQSDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PTG+ V ER+
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGLVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 282 NRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+V DG++ FI+A I R
Sbjct: 341 TSQTQAVFDGDLDGFIQAGIRWR 363
>gi|21221417|ref|NP_627196.1| peptide chain release factor 2 [Streptomyces coelicolor A3(2)]
gi|289771299|ref|ZP_06530677.1| peptide chain release factor 2 [Streptomyces lividans TK24]
gi|19864260|sp|Q53915.2|RF2_STRCO RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|6912002|emb|CAB72218.1| chain release factor 2 [Streptomyces coelicolor A3(2)]
gi|289701498|gb|EFD68927.1| peptide chain release factor 2 [Streptomyces lividans TK24]
Length = 368
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQRE 367
>gi|406575508|ref|ZP_11051211.1| peptide chain release factor 2 [Janibacter hoylei PVAS-1]
gi|404555081|gb|EKA60580.1| peptide chain release factor 2 [Janibacter hoylei PVAS-1]
Length = 390
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 171/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP K+ V L+ + + + + + ++ + + +L + E D A
Sbjct: 43 DLWDDPDKAQGVTSALSRANAELERVHSMDARIDDLEALVELGQEEG-DAETLTEAEGEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + Q E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 AKITTAVGQLEVRTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 KVMDTSYAEEAGLKSATFEVNVPYAYGNLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D +L +F S G+ + A + HIPTGI V E++
Sbjct: 222 PL-IEGTDSIEIPDNELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL ++++LL+ Q + + ++E ++ W + R YV +PY++V+D++T
Sbjct: 281 NRAAALRVMQSRLLL----QKKAEEAAERKELAGDVKASWGDQMRSYVLNPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
+ + ++V DG+I FIEA I R
Sbjct: 337 EHETGNPSAVFDGDIDGFIEAGIRWR 362
>gi|312126885|ref|YP_003991759.1| hypothetical protein Calhy_0649 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776904|gb|ADQ06390.1| hypothetical protein Calhy_0649 [Caldicellulosiruptor
hydrothermalis 108]
Length = 370
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 171/327 (52%), Gaps = 7/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + +
Sbjct: 43 DFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LEEGNHEMAEELEKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 102 LDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+K+ T+ E A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I +EDL F + G+ + + A I+HIPTGI V ER+
Sbjct: 222 P-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHK 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL LKAKLL + ++ + +K E W + R YV PY LV+D +T +
Sbjct: 281 NREIALKILKAKLLELKEKERREKIQKLKGEQTEIGWGNQIRSYVFCPYTLVKDHRTEAE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V+DG I FI A++ R+ +
Sbjct: 341 VGNVEAVMDGEIDVFINAYLKKFRNEE 367
>gi|293189308|ref|ZP_06608031.1| peptide chain release factor 2 [Actinomyces odontolyticus F0309]
gi|399526715|ref|ZP_10766468.1| peptide chain release factor 2 [Actinomyces sp. ICM39]
gi|292821771|gb|EFF80707.1| peptide chain release factor 2 [Actinomyces odontolyticus F0309]
gi|398362731|gb|EJN46407.1| peptide chain release factor 2 [Actinomyces sp. ICM39]
Length = 373
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 175/331 (52%), Gaps = 18/331 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + +A E D G A A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVDMA-AEDPDEGADILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 ADLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 221 EVIPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKS 279
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ AL L+++LLV+ E+ + K+E ++ W + R YV PY++V+D
Sbjct: 280 QIQNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQPYQMVKD 335
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
++T + + SV DG+I FI A I R++
Sbjct: 336 LRTEYESGNPQSVFDGDIDGFINAGIRWRKN 366
>gi|33864328|ref|NP_895888.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9313]
gi|33641108|emb|CAE22237.1| peptide-chain-release factor RF-2 [Prochlorococcus marinus str. MIT
9313]
Length = 375
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 176/332 (53%), Gaps = 10/332 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + + R +A+ +L ++E D + A
Sbjct: 45 DFWNDQQNAQKQMRQLDEVKAQLTQITLWRSAVNDAQATLELYDLEPDDE-MLSEAQSGL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+
Sbjct: 104 KQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMTV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT+E E YA+GYL E G H L+ N + + + A V+++
Sbjct: 164 TVDELSEGEEAGIKSATVEIEGRYAYGYLRNEKGTHRLVRISPFNANGKRQTSFAGVEIM 223
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ +L I ++DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 224 P-KIDQEVELDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKL+VI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 283 NKEKALALLKAKLMVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTAEE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINS---RRSSDTD 329
D +V++G++ FI+ + R SD D
Sbjct: 343 TTDVQAVMNGDLDRFIQTLLRQGVDRPGSDMD 374
>gi|154507630|ref|ZP_02043272.1| hypothetical protein ACTODO_00111 [Actinomyces odontolyticus ATCC
17982]
gi|153797264|gb|EDN79684.1| peptide chain release factor 2 [Actinomyces odontolyticus ATCC
17982]
Length = 373
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 175/331 (52%), Gaps = 18/331 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + +A E D G A A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVDMA-AEDPDEGADILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 ADLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 221 EVIPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKS 279
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ AL L+++LLV+ E+ + K+E ++ W + R YV PY++V+D
Sbjct: 280 QIQNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQPYQMVKD 335
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
++T + + SV DG+I FI A I R++
Sbjct: 336 LRTEYESGNPQSVFDGDIDGFINAGIRWRKN 366
>gi|294629650|ref|ZP_06708210.1| peptide chain release factor 2 [Streptomyces sp. e14]
gi|292832983|gb|EFF91332.1| peptide chain release factor 2 [Streptomyces sp. e14]
Length = 371
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTDFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|407647998|ref|YP_006811757.1| peptide chain release factor 2 [Nocardia brasiliensis ATCC 700358]
gi|407310882|gb|AFU04783.1| peptide chain release factor 2 [Nocardia brasiliensis ATCC 700358]
Length = 371
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 175/328 (53%), Gaps = 15/328 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + +++LR + ++ ++ +LAE E G + A A
Sbjct: 43 DLWNDQDHAQQVTSELSHAQGELRRVEELRQRLDDLPVLYELAEGEE---GDSRTAALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E+ LL G D A V I++G+ G+ WAE L+ MY+RWAD+
Sbjct: 100 ADAERAALHGDVEAMEVRTLLSGEYDKRDALVNIRSGAGGVDAADWAEMLMRMYIRWADR 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
Y V D + G+KSAT + YA+G LS E G H L+ + + + A
Sbjct: 160 HKYSVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ ++I + ++ ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIEIPEGEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + +K + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKISAMRVLQAKLLERKRQEERAEMDALKTNEGAS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T ++ + ++VLDG+I FIE+ I R
Sbjct: 338 RTNYEVNNPSAVLDGDIDGFIESGIRWR 365
>gi|415683581|ref|ZP_11448797.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS00]
gi|418565434|ref|ZP_13129838.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21264]
gi|418595814|ref|ZP_13159409.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21342]
gi|418601772|ref|ZP_13165188.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21345]
gi|315194373|gb|EFU24765.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS00]
gi|371973363|gb|EHO90713.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21264]
gi|374397583|gb|EHQ68792.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21345]
gi|374400422|gb|EHQ71536.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21342]
Length = 330
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|383808491|ref|ZP_09964031.1| peptide chain release factor 2 [Rothia aeria F0474]
gi|383448714|gb|EID51671.1| peptide chain release factor 2 [Rothia aeria F0474]
Length = 375
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 175/328 (53%), Gaps = 9/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
LWDDP + +V L+ +N L L + ++ +++ +LAE E L A
Sbjct: 44 QLWDDPQVAQQVTSALSHKQAELNRLTSLGSRIDDVEVMVELAEAEDPQSAQELLSEART 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + + L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 104 ECVSIRRKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+++D + G+KSAT E +AFG LS E G H L+ + + + A V+
Sbjct: 164 PTKLLDTSYAEEAGLKSATFEVNAPFAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
VVPL +E + ++I + ++ +F S G+ + A + H+PTGI V E++
Sbjct: 224 VVPL-IEQTDAIEIPEAEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQ 282
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ AL L+++LL++ E+ + + + I W + R YV HPY++V+D++TG
Sbjct: 283 LQNRAAALRVLQSRLLLLRKEEEDAKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTG 341
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+ + +VLDG + FI+A I R SS
Sbjct: 342 YEEGNTANVLDGGLNAFIDAGIRWRASS 369
>gi|119486315|ref|ZP_01620374.1| Peptide chain release factor 2 [Lyngbya sp. PCC 8106]
gi|119456528|gb|EAW37658.1| Peptide chain release factor 2 [Lyngbya sp. PCC 8106]
Length = 308
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 161/287 (56%), Gaps = 7/287 (2%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
E+ I +L E+E+ D L A ++ LD++E+ +LL P D GA +TI AG+
Sbjct: 12 EDTDAIVELLELES-DESLLAEAESNLTRLNHDLDRWELQQLLSAPYDKNGAVLTINAGA 70
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WAE LL MY RW + GY+ + + G+KS T+E E YA+GYL E
Sbjct: 71 GGTDAQDWAEMLLRMYTRWGEAHGYKVYLAELSEGDEAGIKSVTLEIEGRYAYGYLKCEK 130
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIA 215
G H L+ N + + + A V+++P+ ++ L+I ++DL ++ G+ Q++
Sbjct: 131 GTHRLVRISPFNANGKRQTSFAGVEIMPM-IDQGVHLEIPEKDLEVTTSRAGGKGGQNVN 189
Query: 216 K--PAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAI 273
K A I H+PTGIAV+ ER+ NK KAL LKAKLL+I EQ ++ I+ + +
Sbjct: 190 KVETAVRIVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAQEQRAQEIAEIRGDLV 249
Query: 274 VNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
W + R YV HPY++V+D++T + + V++G + FI+A++
Sbjct: 250 EAAWGNQIRNYVFHPYQMVKDLRTSEETTAIDDVMNGELDRFIQAYL 296
>gi|57234653|ref|YP_181313.1| peptide chain release factor 2, programmed frameshift, partial
[Dehalococcoides ethenogenes 195]
gi|57225101|gb|AAW40158.1| peptide chain release factor 2, programmed frameshift
[Dehalococcoides ethenogenes 195]
Length = 362
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 161/320 (50%), Gaps = 9/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + + + KLA + +V + L + + + +L + D L R
Sbjct: 39 DFWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVND---LLELFALTHEDPSLGNEIEREV 95
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 155
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+V+
Sbjct: 156 EVLDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEVM 215
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E S D+ I ED+ +F S G+ A + HIP+GI V S ER+
Sbjct: 216 P-EAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQTERSQHQ 274
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L +KLL + + + IK E I W + R YV HPYK+V+D +T +
Sbjct: 275 NREIAMRILASKLLAVEIAKRAEERAKIKGERISAEWGNQIRSYVLHPYKMVKDHRTDYE 334
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + +VL+G + FI A++
Sbjct: 335 VGNAEAVLEGELDGFINAYL 354
>gi|418619449|ref|ZP_13182277.1| peptide chain release factor 2 [Staphylococcus hominis VCU122]
gi|374824495|gb|EHR88453.1| peptide chain release factor 2 [Staphylococcus hominis VCU122]
Length = 331
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 165/327 (50%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ K+ +V+ K +VN +L +K E+ +L + E D + + +
Sbjct: 5 DFWDNQNKAQDVIDKNNALKSIVNGYYELNHKLEDMDATWELLQ-EEYDDEIKEDLEQDI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ +++G++
Sbjct: 64 VSFREQIDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQQGFKI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETIDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PEFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIEA++ S +
Sbjct: 304 TAKVDAVMDGDIAPFIEAYLRQTMSQN 330
>gi|328956713|ref|YP_004374099.1| peptide chain release factor 2 [Carnobacterium sp. 17-4]
gi|328673037|gb|AEB29083.1| peptide chain release factor 2 [Carnobacterium sp. 17-4]
Length = 351
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 140/261 (53%), Gaps = 8/261 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LDQYE+ LL P D A + + G+ G + W LL MY RWA+K G++ +D
Sbjct: 90 LDQYELELLLSDPYDKNNAIIELHPGAGGTESQDWGNLLLRMYTRWAEKRGFKIETLDYQ 149
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLE 188
G+KS T+ + A+GYL E G H L+ F + H + +DVVP L+
Sbjct: 150 SGDEAGIKSVTLLIKGMNAYGYLKAEKGVHRLVRISPFDSAGRRH-TSFVSIDVVPE-LD 207
Query: 189 TSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKA 245
S D++I+ +DL + + G+ + A I H+PTG+ V S +R+ N+ +A
Sbjct: 208 DSVDIKINSDDLKVDTYRASGAGGQHINTTDSAVRITHMPTGVVVASQAQRSQLKNREQA 267
Query: 246 LNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFN 305
++ LKAKL + E+ ++ I+ E + W + R YV HPY +V+D +T + + +
Sbjct: 268 MSMLKAKLHQLEVEEHEKEMAAIRGEQLEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIS 327
Query: 306 SVLDGNIKPFIEAHINSRRSS 326
V+DG I PFI+A++ S+ S+
Sbjct: 328 QVMDGGIDPFIQAYLRSKIST 348
>gi|407452946|ref|YP_006724671.1| protein release subunit factor B [Riemerella anatipestifer RA-CH-1]
gi|403313930|gb|AFR36771.1| Protein chain release factor B [Riemerella anatipestifer RA-CH-1]
Length = 376
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 173/329 (52%), Gaps = 11/329 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P ++ L +L K V +++ E+ +++ + A+ + + AY L
Sbjct: 48 FWDNPKEAEVFLKQLRSKKKWVEDYEEIHTGLEDLQVLLEFAKEDPDSAQELETAYPTLL 107
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++ E +L D A + I AG+ G WA L+ MY+ WADK GY+ +
Sbjct: 108 EK---VENLEFKNMLSNEGDELSAVLQITAGAGGTESCDWASMLMRMYLMWADKNGYKVK 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++ GVK+ T+E E EYAFGYL GE G H L+ F + + H + A V V
Sbjct: 165 ELNFQEGDVAGVKTVTLEIEGEYAFGYLKGENGVHRLVRISPFDSNAKRH-TSFASVYVY 223
Query: 184 PLFLETSPDLQISDEDLLFSS---PSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL ++ S ++ I+ D+ F + G+ + + A ++H PTGI +++ R+
Sbjct: 224 PL-VDDSIEININPADISFETMRASGAGGQNVNKVETAVRLRHAPTGIIIENSESRSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LK++L I E+ + + I+ + W + R YV HPYKLV+DV++G +
Sbjct: 283 NKEKALQLLKSRLYEIELEERMKARNEIEANKMKIEWGSQIRNYVMHPYKLVKDVRSGHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
D ++V++G I PF++A++ + ++ TD
Sbjct: 343 TSDVDAVMNGEITPFLKAYLMADGTAATD 371
>gi|374601529|ref|ZP_09674529.1| peptide chain release factor 2 [Paenibacillus dendritiformis C454]
gi|374392864|gb|EHQ64186.1| peptide chain release factor 2 [Paenibacillus dendritiformis C454]
Length = 340
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 171/335 (51%), Gaps = 16/335 (4%)
Query: 1 MVRNY-------NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI 53
M+ NY + WDD ++ ++ +L +V L+ E+ +++ +LA+ E
Sbjct: 1 MISNYEEKMSAPDFWDDNERAQGIISELNAIKGIVEEYSKLQQDHEDTQMMLELADEEN- 59
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D GL + + + + ++Q+E+ LL P D A + + G+ G + W + LL M
Sbjct: 60 DEGLAQELADSVKQLYERVEQFELQLLLSEPYDKMNAILELHPGAGGTESQDWGQMLLRM 119
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGS 170
Y RWA++ G++ V+D G+KS T+ + A+GYL E G H L+ F +
Sbjct: 120 YTRWAEQRGFKVEVLDYLPGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSG 179
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
H + ++C DVVP + D+++ EDL + + G+ + A I HIPTG
Sbjct: 180 RRHTSFVSC-DVVPEITD-DVDIEVRTEDLKIDTYRASGAGGQHINTTDSAVRITHIPTG 237
Query: 228 IAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSH 287
I V ER+ N+ +A+ L++KL E+ ++ I+ + + W + R YV H
Sbjct: 238 IVVTCQTERSQIKNRERAMTLLRSKLYERKIEEQQKQLAEIRGDQMDIAWGSQIRSYVFH 297
Query: 288 PYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
PY +V+D +T ++ + +V+DG+I FIEA++ +
Sbjct: 298 PYSMVKDHRTQVETGNVGAVMDGDIDEFIEAYLRT 332
>gi|374611917|ref|ZP_09684700.1| peptide chain release factor 2 [Mycobacterium tusciae JS617]
gi|373548561|gb|EHP75252.1| peptide chain release factor 2 [Mycobacterium tusciae JS617]
Length = 371
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 174/330 (52%), Gaps = 11/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD +++ +V +L+ + + +++LR + ++ ++ ++A E G + A
Sbjct: 43 NLWDDQSRAQKVTSELSHTQGELRRVEELRQRLDDLPVLYEMA-AEEEGSGAAEAQAEAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL L+ E+ LL G D A + I++G+ G+ WAE L+ MYVRWA++
Sbjct: 102 TELKKLREDLEAMEVRTLLSGEYDAREALLNIRSGAGGVDAADWAEMLMRMYVRWAEQHN 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ ET+ + I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 EVLPV-TETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVSAMRVLQAKLLERKRLEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +VLDG+I F+EA I R D
Sbjct: 340 EYEVGNPAAVLDGDIDGFLEAGIRWRNRRD 369
>gi|302551795|ref|ZP_07304137.1| peptide chain release factor 2 [Streptomyces viridochromogenes DSM
40736]
gi|302469413|gb|EFL32506.1| peptide chain release factor 2 [Streptomyces viridochromogenes DSM
40736]
Length = 368
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + SV +G I F+EA I R+ +
Sbjct: 341 VGNPESVFNGEIDGFLEAGIRWRKQQE 367
>gi|329936498|ref|ZP_08286234.1| peptide chain release factor 2 [Streptomyces griseoaurantiacus
M045]
gi|329304013|gb|EGG47895.1| peptide chain release factor 2 [Streptomyces griseoaurantiacus
M045]
Length = 368
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPYDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTDFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|219887937|gb|ACL54343.1| unknown [Zea mays]
gi|413939254|gb|AFW73805.1| hypothetical protein ZEAMMB73_768662 [Zea mays]
Length = 467
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 169/324 (52%), Gaps = 10/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ + E + +LA E D L + +A
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLAREEN-DNELEMESMKAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY+
Sbjct: 197 ADMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYRSWAQRRGYKI 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMSGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +T+ QI D DL F S G+ + + A I HIPTGI+ S ER+
Sbjct: 316 IPILGDTTSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGISATSQNERSQH 375
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+++L + + Q N + ++ W + R YV HPY++V+D++T
Sbjct: 376 MNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEIS-WGNQIRSYVLHPYRMVKDLRTN 434
Query: 299 IQLPDFNSVLDGNIKPFIEAHINS 322
++ D +SVL+G++ FI +++S
Sbjct: 435 YEVSDPDSVLEGDLDDFILNYLSS 458
>gi|406671406|ref|ZP_11078645.1| peptide chain release factor 2 [Facklamia hominis CCUG 36813]
gi|405580656|gb|EKB54715.1| peptide chain release factor 2 [Facklamia hominis CCUG 36813]
Length = 344
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 7/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD +++ ++ ++ D NA L E+ ++ +L E E +D L++ +
Sbjct: 20 FWDDQSQAQSIIQEMNDKESTRNAFLKLVSDWEDLQVEVELYE-ETLDRPLWEEIEKNCY 78
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L Y++S LL +D A + I G+ G + W + LL MY RWA + Y
Sbjct: 79 KFEQNLKAYQLSLLLSEEHDHCNAILEIHPGAGGKESQDWGQMLLRMYERWASQHDYHIS 138
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVVP 184
V+D + G+KS T+E + A+G+L E G H LI P S T C +DV P
Sbjct: 139 VIDYQNGEEAGIKSVTLEVSGDKAYGFLKSEKGVHRLIRISPFDSNGKRHTSFCSIDVTP 198
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ ++ S ++ I+ +DL + + G+ + A I HIPTGI QS +R+ N
Sbjct: 199 M-IDDSIEIHINQDDLRIDTYRASGAGGQHINKTSSAVRITHIPTGIVTQSQAQRSQIQN 257
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ +A+ L+AKL + + + IK E W + R YV HPY++V+D +T +
Sbjct: 258 REQAMGLLRAKLYQLELADKEAELQKIKGEQKEIAWGSQIRSYVFHPYRMVKDHRTNFES 317
Query: 302 PDFNSVLDGNIKPFIEAHIN 321
+ ++V+DG I PFI+A++N
Sbjct: 318 ANVDAVMDGEIDPFIDAYLN 337
>gi|416849065|ref|ZP_11908008.1| peptide chain release factor 2 [Staphylococcus aureus O46]
gi|323441389|gb|EGA99047.1| peptide chain release factor 2 [Staphylococcus aureus O46]
Length = 331
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFEVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|418576816|ref|ZP_13140948.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379324481|gb|EHY91627.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 335
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 6/328 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K VVNA + L + E+ L +E D + +
Sbjct: 1 MMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEQSVQDFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ + D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F T ++ I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKTLKSKLYQLKIEEQEQEMAEIRGEQKEIGWGSQIRSYVFHPYAMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T + ++V+DG+I PFIEA + S+
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIEAFLRSQ 327
>gi|290959957|ref|YP_003491139.1| peptide chain release factor 2 [Streptomyces scabiei 87.22]
gi|260649483|emb|CBG72598.1| peptide chain release factor 2 [Streptomyces scabiei 87.22]
Length = 368
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 ASVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLDRRRQEEQARMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I+ F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIEGFLEAGIRWRKQQE 367
>gi|115311855|sp|Q49VV3.2|RF2_STAS1 RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 373
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 6/328 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K VVNA + L + E+ L +E D + +
Sbjct: 39 MMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 98 LEQSVQDFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ + D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F T ++ I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 218 SCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKTLKSKLYQLKIEEQEQEMAEIRGEQKEIGWGSQIRSYVFHPYAMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T + ++V+DG+I PFIEA + S+
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIEAFLRSQ 365
>gi|408501432|ref|YP_006865351.1| peptide chain release factor 2 [Bifidobacterium asteroides PRL2011]
gi|408466256|gb|AFU71785.1| peptide chain release factor 2 [Bifidobacterium asteroides PRL2011]
Length = 377
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 162/323 (50%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V +L+ + L+ + ++ + + +L E D A +
Sbjct: 44 GLWDDQENAQKVTSRLSALQSQLKHLESASSRLDDVQALEELGREEH-DQDTLVEARKEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L E+ LL G D A VTI++G+ G+ WA+ LL MY+RWA++ G+
Sbjct: 103 DSLRSDLADMEIQTLLDGEYDERAAVVTIRSGAGGVDAADWAQMLLRMYMRWAERHGFST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D D+ + S G+ + A I H+PT I V ER+
Sbjct: 223 PL-VEPTDHIDIPDSDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTNIVVTMQDERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LLV+ E+ + + I W + R YV HPY++V+D++TG +
Sbjct: 282 NRAAAMAVLQSRLLVLRHEEEAKKKKELAGD-IKASWGDQMRSYVLHPYQMVKDLRTGYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
D V DG+I FIEA I R
Sbjct: 341 TSDTQGVFDGDIDAFIEAGIRWR 363
>gi|317497043|ref|ZP_07955371.1| peptide chain release factor 2 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895703|gb|EFV17857.1| peptide chain release factor 2 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 333
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ +S V+ ++ VV DL+ K E+ + + +AE E D L + A
Sbjct: 6 FWDNVEESQNVMKEVKSLKGVVEEYDDLKTKYEDIETLIDMAE-EDEDADLIEEATALMD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K ++ +S LL G D + A +T+ AG+ G WA L M+ RWA K+GY
Sbjct: 65 EFEKTYEELRISTLLTGEYDKDDAILTLHAGAGGTESCDWAGMLYRMFTRWAGKKGYGTE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS T++ A+GYL E G H L+ N + + + A DV+P
Sbjct: 125 VLDYLDGDEAGIKSVTVKITGMNAYGYLRSEKGVHRLVRISPFNAAGKRQTSFASCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ +++I+DED+ + + G+ + A I H+PTGI VQ ER+ N
Sbjct: 185 -DIKDDIEVEIADEDIRIDTYRASGAGGQHINKTDSAIRITHLPTGIVVQCQNERSQHKN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K +A+ LK KL ++ +Q + +S I+ + N W + R YV PY +V+D +T +
Sbjct: 244 KDQAMKMLKTKLYLLKQQQHLEKLSDIRGDVGDNGWGNQIRSYVLQPYTMVKDHRTNFES 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDG++ F+ A++
Sbjct: 304 GNPSAVLDGDLDGFMNAYL 322
>gi|167767702|ref|ZP_02439755.1| hypothetical protein CLOSS21_02237 [Clostridium sp. SS2/1]
gi|429761689|ref|ZP_19294105.1| peptide chain release factor 2 [Anaerostipes hadrus DSM 3319]
gi|167710441|gb|EDS21020.1| peptide chain release factor 2 [Clostridium sp. SS2/1]
gi|291558928|emb|CBL37728.1| bacterial peptide chain release factor 2 (bRF-2)
[butyrate-producing bacterium SSC/2]
gi|429183124|gb|EKY24193.1| peptide chain release factor 2 [Anaerostipes hadrus DSM 3319]
Length = 373
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ +S V+ ++ VV DL+ K E+ + + +AE E D L + A
Sbjct: 46 FWDNVEESQNVMKEVKSLKGVVEEYDDLKTKYEDIETLIDMAE-EDEDADLIEEATALMD 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K ++ +S LL G D + A +T+ AG+ G WA L M+ RWA K+GY
Sbjct: 105 EFEKTYEELRISTLLTGEYDKDDAILTLHAGAGGTESCDWAGMLYRMFTRWAGKKGYGTE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS T++ A+GYL E G H L+ N + + + A DV+P
Sbjct: 165 VLDYLDGDEAGIKSVTVKITGMNAYGYLRSEKGVHRLVRISPFNAAGKRQTSFASCDVMP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ +++I+DED+ + + G+ + A I H+PTGI VQ ER+ N
Sbjct: 225 -DIKDDIEVEIADEDIRIDTYRASGAGGQHINKTDSAIRITHLPTGIVVQCQNERSQHKN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K +A+ LK KL ++ +Q + +S I+ + N W + R YV PY +V+D +T +
Sbjct: 284 KDQAMKMLKTKLYLLKQQQHLEKLSDIRGDVGDNGWGNQIRSYVLQPYTMVKDHRTNFES 343
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDG++ F+ A++
Sbjct: 344 GNPSAVLDGDLDGFMNAYL 362
>gi|297626158|ref|YP_003687921.1| peptide chain release factor 2 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921923|emb|CBL56483.1| Peptide chain release factor 2 (RF-2) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 369
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + V +L+ V ++ LR + ++A + +LA E+ D + A +
Sbjct: 44 DLWNDQEHAQSVTSRLSRLQSSVEKVQTLRSRLDDASTLLELASEES-DADTAQEAEKEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ LL G D A VTI++ + G+ +A LL MY RWA++ Y
Sbjct: 103 ATLADEIDTLEVQTLLSGEYDERDALVTIRSEAGGVDAADFAAMLLRMYERWAERHAYSY 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYDISYAEEAGIKSATFTVKSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET ++ I ++D+ +F + G+ + A I H+PTGI V ER+
Sbjct: 223 PVVEETD-NIDIPEKDIRVDVFHASGPGGQGVNTTDSAVRITHLPTGIVVTCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK L L+AKLL ++ + + +K + N W + R YV HPY++V+D++TG +
Sbjct: 282 NKAAGLRVLQAKLLERARQEREAEMDALKSDG--NSWGSQMRSYVLHPYQMVKDLRTGFE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V DG+I FIE I RR +
Sbjct: 340 SGSPDNVFDGDIDGFIERGIRWRRQEE 366
>gi|282903384|ref|ZP_06311275.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C160]
gi|282596339|gb|EFC01300.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C160]
Length = 331
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG++ PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDVGPFIESYLRQTMSHD 331
>gi|407277743|ref|ZP_11106213.1| peptide chain release factor 2 [Rhodococcus sp. P14]
Length = 374
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 172/327 (52%), Gaps = 15/327 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ + + +++LR + ++ ++ +LAE E G + A
Sbjct: 44 LWNDQEHAQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAEGEE---GEDRTVALADA 100
Query: 67 DVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
D + ++ E+ LL G D A V I+AG+ G+ WAE L+ MY+RWADK
Sbjct: 101 DAERAALRTDIEAMEVRTLLSGEYDQRDALVNIRAGAGGVDAADWAEMLMRMYIRWADKH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 161 GYPVEVYDTSYAEEAGIKSATFAIKAPYTYGTLSVEMGTHRLVRISPFDNQGRRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E+
Sbjct: 221 VEVLPV-VETTDHIDVDENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 279
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++
Sbjct: 280 SQLQNKVSAMRVLQAKLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T ++ + ++VLDG+I F+E I R
Sbjct: 339 TEHEVNNPSAVLDGDIDGFLEEGIRWR 365
>gi|455649556|gb|EMF28360.1| peptide chain release factor 2 [Streptomyces gancidicus BKS 13-15]
Length = 368
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRSRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TSVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELIETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|357235903|ref|ZP_09123246.1| peptide chain release factor 2 [Streptococcus criceti HS-6]
gi|356883885|gb|EHI74085.1| peptide chain release factor 2 [Streptococcus criceti HS-6]
Length = 326
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 167/327 (51%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ WDD K+++ L +L + N +++L +EE +L ++ E +A +
Sbjct: 5 DFWDDNVAAQKTSQELNELKQTYDTFNQMEEL---SEETELYLEMLEEDASVQEDLEDTL 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -AKLD--KMMASYEMTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYQRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE +A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + D+ I DED+ F S G+ + + HIPTGI V S +R
Sbjct: 178 VEVMPE-LDDTIDVDIRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ VS +K + W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAEEVSALKGDKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I FI+A++ R
Sbjct: 297 TGYEVAQVDKVMDGDIDGFIDAYLKWR 323
>gi|146296348|ref|YP_001180119.1| peptide chain release factor 2 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409924|gb|ABP66928.1| peptide chain release factor 2 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 323
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 168/322 (52%), Gaps = 17/322 (5%)
Query: 21 LADSLKVVNALKDL-----RYKA-----EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSK 70
+ +S KV+ +K L RY+ E+ K++ QL +E + + + +D+ +
Sbjct: 1 MENSQKVLQQIKRLKDKIERYQKLYSQWEDLKVLTQLC-IEESNIEMSDELEKDLIDLER 59
Query: 71 LLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDK 130
++++++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+ +D
Sbjct: 60 KIEEFKLEILLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKVETLDI 119
Query: 131 CCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLE 188
+ G+K+ T+ E A+GYL E G H L+ + + + A V+V+P +E
Sbjct: 120 LPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLP-EVE 178
Query: 189 TSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKA 245
D++I +EDL F + G+ + + A I+HIPTGI V ER+ N+ A
Sbjct: 179 DDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHKNREIA 238
Query: 246 LNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFN 305
L LKAKLL + ++ + +K E W + R YV PY LV+D +T ++ +
Sbjct: 239 LKILKAKLLELREKERREKIQKLKGEQTEIGWGNQIRSYVFCPYTLVKDHRTDAEVGNVE 298
Query: 306 SVLDGNIKPFIEAHINSRRSSD 327
+V+DG I FI A++ R+ +
Sbjct: 299 AVMDGEIDVFINAYLKKFRNEE 320
>gi|418561330|ref|ZP_13125822.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21262]
gi|371977675|gb|EHO94938.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21262]
Length = 330
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W++ TK+ E++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWENQTKAQEIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|429730352|ref|ZP_19265000.1| peptide chain release factor 2 [Corynebacterium durum F0235]
gi|429147943|gb|EKX90961.1| peptide chain release factor 2 [Corynebacterium durum F0235]
Length = 376
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 168/325 (51%), Gaps = 14/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA--IDYGLFKRAYR 63
+LWDDP + +V +L+ + + +LR + ++ ++ + AE E I+ +RA
Sbjct: 51 SLWDDPDHAQQVTSQLSHVQAELRRVTELRQRLDDLPILYEFAEEEGDGIEAADEERAA- 109
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
V ++ E+ +L G D A + I++G+ G+ WAE LL MY RWA+K GY
Sbjct: 110 ----VRAEIETLEVKTMLSGEYDAREALINIRSGAGGVDAADWAEMLLRMYTRWAEKAGY 165
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+
Sbjct: 166 SVDIYDISYAEEAGIKSATFVVHGEYTYGTLSVEQGAHRLVRISPFDNQGRRQTSFAEVE 225
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E + +++ D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 226 VLPV-VEQTDHIEVPDSEIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 284
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 285 IQNKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTK 343
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D + VLDG I F+EA I R
Sbjct: 344 YEVNDPSQVLDGEIDGFLEAGIRWR 368
>gi|456385063|gb|EMF50641.1| prfB protein [Streptomyces bottropensis ATCC 25435]
Length = 368
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TSVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLDRRRQEEQARMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I+ F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIEGFLEAGIRWRKQQE 367
>gi|295836903|ref|ZP_06823836.1| peptide chain release factor 2 [Streptomyces sp. SPB74]
gi|295826265|gb|EFG64762.1| peptide chain release factor 2 [Streptomyces sp. SPB74]
Length = 371
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA E D + A +
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFELAADEG-DADTQEEAEQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDSREAVVTIRAEAGGVDASDFAERLQRMYLRWAERLGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFAVHTPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQEKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQQE 367
>gi|225851497|ref|YP_002731731.1| peptide chain release factor 2 [Persephonella marina EX-H1]
gi|225646418|gb|ACO04604.1| peptide chain release factor 2 [Persephonella marina EX-H1]
Length = 370
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 161/323 (49%), Gaps = 7/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K+ E+ K + ++ + K + K +L E+E D R
Sbjct: 43 DFWNDTKKAQEISSKRNAIANKIQEIESVEKKINDIKEFIELLELE-YDKETEDEIKREI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K + + E + LL D++ A VT++AGS G+ W E LL MY+RWA+K G+
Sbjct: 102 EALDKEITKLETASLLSEEYDMKNAIVTLQAGSGGVEACDWTEMLLRMYLRWAEKNGFDV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD G+KSAT + YA+GYL GE G H L+ + + + + V V+
Sbjct: 162 EMVDYQPDDVAGIKSATFIVKGPYAYGYLKGEQGVHRLVRISPFDANKRRHTSFSAVSVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P + ++I +EDL F + G+ + A I HIPTGI V ER+
Sbjct: 222 PE-IGDEVKVEIKEEDLRIDTFRASGAGGQHVNTTDSAVRIVHIPTGITVSCQSERSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ KAL LKAKL E+ ++ E W + R YV PY++V+D++TG +
Sbjct: 281 NRAKALQMLKAKLYQYELEKQKEKQKELEGEKKDISWGSQIRSYVFQPYQMVKDLRTGYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ +V+DG+I PFIE+++ R
Sbjct: 341 TGNIQAVMDGDIDPFIESYLKWR 363
>gi|226528475|ref|NP_001148129.1| peptide chain release factor 2 [Zea mays]
gi|195616002|gb|ACG29831.1| peptide chain release factor 2 [Zea mays]
Length = 467
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 169/324 (52%), Gaps = 10/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ + E + +LA E D L + +A
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLAREEN-DNELEMESMKAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY+
Sbjct: 197 ADMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYRSWAQRRGYKI 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMSGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +T+ QI D DL F S G+ + + A I HIPTGI+ S ER+
Sbjct: 316 IPILGDTTSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGISATSQNERSQH 375
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+++L + + Q N + ++ W + R YV HPY++V+D++T
Sbjct: 376 MNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEIS-WGNQIRSYVLHPYRMVKDLRTN 434
Query: 299 IQLPDFNSVLDGNIKPFIEAHINS 322
++ D +SVL+G++ FI +++S
Sbjct: 435 YEVSDPDSVLEGDLDDFILNYLSS 458
>gi|1402638|dbj|BAA13170.1| PrfB [Streptomyces coelicolor]
Length = 368
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 170/327 (51%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNRVRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQRE 367
>gi|374989282|ref|YP_004964777.1| peptide chain release factor 2 [Streptomyces bingchenggensis BCW-1]
gi|297159934|gb|ADI09646.1| peptide chain release factor 2 [Streptomyces bingchenggensis BCW-1]
Length = 383
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 174/328 (53%), Gaps = 10/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + ++LR + ++ +++ +A D + A
Sbjct: 57 SLWDDPENAQKITSRLSYLQGQLRKAEELRSRIDDLEVL--FELADAEDDADARAEAVAE 114
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD V K +D+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ GY+
Sbjct: 115 LDSVRKAVDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEQLQRMYLRWAERHGYK 174
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KS T + YA+G LS E G H L+ + + + A V+V
Sbjct: 175 TEVYDTSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEV 234
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 235 LPV-VEKTDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQI 293
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T
Sbjct: 294 QNKASAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEF 352
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +VLDG + F+EA I R+ +
Sbjct: 353 EVGNPQAVLDGELDGFLEAGIRWRKQQE 380
>gi|418329734|ref|ZP_12940787.1| peptide chain release factor 2 [Staphylococcus epidermidis
14.1.R1.SE]
gi|418614095|ref|ZP_13177082.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU118]
gi|418632618|ref|ZP_13195048.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU128]
gi|418633748|ref|ZP_13196154.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU129]
gi|420176685|ref|ZP_14683092.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM057]
gi|420180368|ref|ZP_14686603.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM053]
gi|420189997|ref|ZP_14695945.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM037]
gi|420193118|ref|ZP_14698973.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM023]
gi|420203758|ref|ZP_14709319.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM015]
gi|365229857|gb|EHM70985.1| peptide chain release factor 2 [Staphylococcus epidermidis
14.1.R1.SE]
gi|374821668|gb|EHR85720.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU118]
gi|374832188|gb|EHR95908.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU128]
gi|374838695|gb|EHS02233.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU129]
gi|394250813|gb|EJD95974.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM053]
gi|394252251|gb|EJD97289.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM057]
gi|394259290|gb|EJE04148.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM037]
gi|394260241|gb|EJE05056.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM023]
gi|394274340|gb|EJE18761.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM015]
Length = 333
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D + K
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKKE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG I PFIEA++
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYL 324
>gi|255528153|ref|ZP_05394980.1| peptide chain release factor 2 [Clostridium carboxidivorans P7]
gi|255508166|gb|EET84579.1| peptide chain release factor 2 [Clostridium carboxidivorans P7]
Length = 326
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 161/320 (50%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W+D K+ E+ + ++ K+L K ++A+ + +LA +E D K R
Sbjct: 5 NFWNDTDKAQEITSEERFLKSRLDKYKELETKIQDAEFLTKLA-IEENDLSSSKDIIREV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +++ + LL G D A + I G G + W E LL MY RWA+K+G++
Sbjct: 64 EEIDNETERFRIEILLSGEYDKNNAIMDIHVGVGGTDAQDWTEMLLRMYTRWAEKKGFKI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD ++ G+KSAT+ E+A+GYL E G H L+ N + + + A ++V+
Sbjct: 124 ETVDILPAEDAGIKSATLRIIGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASIEVL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L + D+ I +D+ + S G+ + + A I HIPTGI VQ +R+
Sbjct: 184 PE-LTNNQDIDIKPDDIKVDTYRSSGAGGQHVNKTESAIRITHIPTGIVVQCQNQRSQHH 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LKAKL + + + E W + R YV PY +V+D +T ++
Sbjct: 243 NREEAMRMLKAKLAELKERAHKEKIEDLTGELKDMGWGSQIRSYVFQPYTMVKDHRTSVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ N+V+DG+I FI ++
Sbjct: 303 CGNINAVMDGDIDQFINEYL 322
>gi|403724386|ref|ZP_10946024.1| peptide chain release factor 2 [Gordonia rhizosphera NBRC 16068]
gi|403205596|dbj|GAB90355.1| peptide chain release factor 2 [Gordonia rhizosphera NBRC 16068]
Length = 371
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 171/328 (52%), Gaps = 15/328 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + V +L+ + + + +LR + ++ + +LAE E G + A A
Sbjct: 43 DLWNDQEHAQRVTSELSHAQSELRRVSELRQRLDDLPVHYELAEAEE---GEDRTAALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+K
Sbjct: 100 ADGERASLRADVEAMEVKTMLAGEYDPRDALVNIRSGAGGVDAADWAQMLMRMYIRWAEK 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
Y V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 160 HNYSVEVYDTSYAEEAGIKSATFAIKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + I++ DL ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIDIAETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + N W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKAAAMRVLQAKLLERKRQEERAELDALKSDG-GNSWGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T I+ + +++LDG+I FIEA I R
Sbjct: 338 RTNIEDNNPSAILDGDIDKFIEAGIRWR 365
>gi|433602857|ref|YP_007035226.1| Peptide chain release factor 2 [Saccharothrix espanaensis DSM
44229]
gi|407880710|emb|CCH28353.1| Peptide chain release factor 2 [Saccharothrix espanaensis DSM
44229]
Length = 365
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 166/324 (51%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ V +L+ + + LR + ++ ++ +LAE E D G A
Sbjct: 43 DLWDDQEQAQRVTSQLSHKQGELRRVVALRDRLDDLSVLYELAEDEG-DEGSLAEADTEH 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + E+ LL G D A VTI+A + GI +AE LL MY RWA++ GY
Sbjct: 102 RKLRDEISSLEVRTLLSGEYDERNALVTIRAEAGGIDAADFAEMLLRMYSRWAERHGYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+VV
Sbjct: 162 DVFDTSYAEEAGIKSATFRITAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I ++DL ++ S G+ + A + HIPTGI V ER+
Sbjct: 222 PV-VEQTDHVDIDEKDLRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQLQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + +K + W + R YV HPY++V+D++T +
Sbjct: 281 NKATAMAVLQAKLLERQRQEEQARMDALKDSG--SSWGNQMRSYVLHPYQMVKDLRTEHE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ + ++VLDG I F+EA I R+
Sbjct: 339 VGNPSAVLDGEIDDFLEAGIRWRK 362
>gi|417902351|ref|ZP_12546218.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21266]
gi|341843441|gb|EGS84668.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21266]
Length = 331
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 165/332 (49%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + +GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNVYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|239623407|ref|ZP_04666438.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522373|gb|EEQ62239.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 338
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 160/320 (50%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P KS +V+ A +LK V ++L + E+ +++ Q+ E D L
Sbjct: 6 FWDNPEKSTR-MVREAKNLKDEVETFRELEQEYEDIQVMIQMG-YEENDASLIPEIEEML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
S L++ M LL G D A + + AG+ G W L MY RWA+K+G++
Sbjct: 64 GHFSDTLEKMRMKLLLSGEYDSNNAILRLNAGAGGTESCDWCSMLYRMYCRWAEKKGFKT 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T++ E A+GYL E G H L+ N + + + D++
Sbjct: 124 EVLDFLDGDEAGIKSVTVQINGENAYGYLRSEHGVHRLVRISPFNAAGKRQTSFVSCDIM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E D++I+ +D+ + S G+ + A I H P+G V ER+ F
Sbjct: 184 PDIQE-DIDIEINPDDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGTVVTCQNERSQFQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LK+KL ++ E+ + + I+ + N W + R YV PY +V+D +TG +
Sbjct: 243 NKDKAMQMLKSKLFLLKQEEQAAKAAGIRGDVKDNGWGSQIRSYVLQPYTMVKDHRTGEE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++VLDGNI FI A++
Sbjct: 303 SGNVDAVLDGNIDSFISAYL 322
>gi|410729113|ref|ZP_11367197.1| peptide chain release factor 2 [Clostridium sp. Maddingley
MBC34-26]
gi|410596236|gb|EKQ50918.1| peptide chain release factor 2 [Clostridium sp. Maddingley
MBC34-26]
Length = 324
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 152/319 (47%), Gaps = 8/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ EV K ++ L+ + E+ +++ ++ ME D
Sbjct: 6 FWDDTKRAEEVTKKSKVIKSKIDNYDKLKLQVEDVEVLKEI--MEEDDEESANEIIDTIR 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++ Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 NIETQIEDYNMKVLLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSVE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 124 TLDLLPGDEAGIKSVTLKVNGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFASMEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L D+ I +DL + S G+ + A I H+PTGI VQ ER+ FAN
Sbjct: 184 -ELTKEQDIDIKADDLKIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQCQNERSQFAN 242
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 243 KDTAMEMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 302
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ +V+DG I FI A++
Sbjct: 303 SNVTAVMDGEIDMFINAYL 321
>gi|238923127|ref|YP_002936640.1| peptide chain release factor 2 in translation [Eubacterium rectale
ATCC 33656]
gi|238874799|gb|ACR74506.1| peptide chain release factor 2 in translation [Eubacterium rectale
ATCC 33656]
Length = 330
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 153/320 (47%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP KS + +L V L+ + E+ + + ++ E D L +
Sbjct: 5 DFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEMG-YEENDESLIPEIQQML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D D M LL G D A + + AG+ G WA L MY +WADK+G+
Sbjct: 64 DDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWASMLFRMYSKWADKKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D+++ DED+ + S G+ + A I H P+GI VQ ER+
Sbjct: 184 P-DIEEDLDIEVKDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQCQNERSQHM 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ E+ + + I+ E W + R YV PY +V+D +T ++
Sbjct: 243 NKDKAMQMLKAKLYLLKQEENAAKEAGIRGEVKEIGWGSQIRSYVLQPYTMVKDHRTDVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++VLDGNI FI ++
Sbjct: 303 TGNADAVLDGNIDIFINGYL 322
>gi|433447236|ref|ZP_20410869.1| peptide chain release factor B [Anoxybacillus flavithermus
TNO-09.006]
gi|432000070|gb|ELK20976.1| peptide chain release factor B [Anoxybacillus flavithermus
TNO-09.006]
Length = 329
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 166/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A++LK +V + L + E ++ +L + E D L K
Sbjct: 5 DFWDD-QKAAQAVISEANALKDLVGEFRSLEERFENLEVTYELVKEEP-DEELQKELVAE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ +SK ++E+ LL P D A + + G+ G + WA LL MY RWA+K+GY+
Sbjct: 63 AKKLSKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGYK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLF-----LETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
VVP F ++ PD D + S G+ + A I HIPTGI V ER
Sbjct: 182 VVPEFDDNIEIDVRPDEIKVD---TYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQSER 238
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ KA+N LKAKL E+ + ++ I+ E W + R YV HPY LV+D +
Sbjct: 239 SQIKNREKAMNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWGSQIRSYVFHPYSLVKDHR 298
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T ++ + +V+DG I FI+A++ S+
Sbjct: 299 TNTEVGNVQAVMDGEIDVFIDAYLRSK 325
>gi|227549373|ref|ZP_03979422.1| peptide chain release factor 2 [Corynebacterium lipophiloflavum DSM
44291]
gi|227078558|gb|EEI16521.1| peptide chain release factor 2 [Corynebacterium lipophiloflavum DSM
44291]
Length = 365
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 170/327 (51%), Gaps = 19/327 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA----IDYGLFKRA 61
+LWDDP + +V +L++ + + LR + ++ ++ +LAE E +D L
Sbjct: 43 SLWDDPAHAQKVTTELSNVQARLKKVASLRERIDDLPVMYELAEEEGEPALVDDEL---- 98
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A+L+ S + E+ +L G D A V I++G+ G+ WAE L+ MY RWA+K
Sbjct: 99 --AALEES--IGSLEVQTMLSGEYDEREAVVNIRSGAGGVDAADWAEMLMRMYTRWAEKN 154
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
G++ V D + G+KSAT EY +G LS E GAH L+ + + + A
Sbjct: 155 GHKVEVYDISYAEEAGIKSATFVVRGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAE 214
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +E + + I D D+ ++ S G+ + A I H+PTGI V E+
Sbjct: 215 VEVLPV-VEQTDHIDIPDSDIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGIVVTCQNEK 273
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK AL L++KLL ++ + + + + W + R YV HPY++V+D++
Sbjct: 274 SQIQNKASALGVLQSKLLERKRQEEKAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLR 332
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T ++ D VLDG+I F+E+ I R
Sbjct: 333 TNYEVGDPQKVLDGDIDGFLESGIRWR 359
>gi|313207347|ref|YP_004046524.1| peptide chain release factor 2 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386320651|ref|YP_006016813.1| Protein chain release factor B [Riemerella anatipestifer RA-GD]
gi|416110319|ref|ZP_11591934.1| peptide chain release factor 2 [Riemerella anatipestifer RA-YM]
gi|442315385|ref|YP_007356688.1| Protein chain release factor B [Riemerella anatipestifer RA-CH-2]
gi|312446663|gb|ADQ83018.1| bacterial peptide chain release factor 2 (bRF-2) [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|315023242|gb|EFT36252.1| peptide chain release factor 2 [Riemerella anatipestifer RA-YM]
gi|325335194|gb|ADZ11468.1| Protein chain release factor B [Riemerella anatipestifer RA-GD]
gi|441484308|gb|AGC40994.1| Protein chain release factor B [Riemerella anatipestifer RA-CH-2]
Length = 376
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 173/329 (52%), Gaps = 11/329 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P ++ L +L K V +++ E+ +++ + A+ + + AY L
Sbjct: 48 FWDNPKEAEVFLKQLRSKKKWVEDYEEIHTGLEDLQVLIEFAKEDPDSAQELETAYPTLL 107
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++ E +L D A + I AG+ G WA L+ MY+ WADK GY+ +
Sbjct: 108 EK---VENLEFKNMLSNEGDELSAVLQITAGAGGTESCDWASMLMRMYLMWADKNGYKVK 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++ GVK+ T+E E EYAFGYL GE G H L+ F + + H + A V V
Sbjct: 165 ELNFQEGDVAGVKTVTLEIEGEYAFGYLKGENGVHRLVRISPFDSNAKRH-TSFASVYVY 223
Query: 184 PLFLETSPDLQISDEDLLFSS---PSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL ++ S ++ I+ D+ F + G+ + + A ++H PTGI +++ R+
Sbjct: 224 PL-VDDSIEININPADISFETMRASGAGGQNVNKVETAVRLRHAPTGIIIENSESRSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LK++L I E+ + + I+ + W + R YV HPYKLV+DV++G +
Sbjct: 283 NKEKALQLLKSRLYEIELEERMRARNEIEANKMKIEWGSQIRNYVMHPYKLVKDVRSGHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
D ++V++G I PF++A++ + ++ TD
Sbjct: 343 TSDVDAVMNGEITPFLKAYLMADGTAVTD 371
>gi|302560365|ref|ZP_07312707.1| peptide chain release factor 2 [Streptomyces griseoflavus Tu4000]
gi|302477983|gb|EFL41076.1| peptide chain release factor 2 [Streptomyces griseoflavus Tu4000]
Length = 368
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPEEAQKITSKLSHLQAEVRKAEGLRGRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TLVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 ELIETSYAEEAGIKSTTFSVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + SV +G I F+EA I R+ +
Sbjct: 341 VGNPESVFNGEIDGFLEAGIRWRKQQE 367
>gi|51891274|ref|YP_073965.1| peptide chain release factor 2 [Symbiobacterium thermophilum IAM
14863]
gi|51854963|dbj|BAD39121.1| peptide chain release factor 2 [Symbiobacterium thermophilum IAM
14863]
Length = 308
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 158/301 (52%), Gaps = 6/301 (1%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+ L+ R + ++ +++ LAE EA D + A + + + + Q+E+ LL G D
Sbjct: 1 MEQLESFRRRLDDLEVMIDLAE-EASDAEMAAEARAEADALEEQVRQFELQVLLNGKYDA 59
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
A +TI AG+ G + WAE LL MYVRWA++ G++ +D+ G+KS TI
Sbjct: 60 YNAILTIHAGAGGTEAQDWAEMLLRMYVRWAERRGFKVEELDRLDGDEAGIKSVTIAVRG 119
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LF 202
YA+G+L E G H L+ + S + A V+V+P + D++I EDL F
Sbjct: 120 PYAYGFLRPEMGVHRLVRISPFDASGRRHTSFAAVEVMPEIEDDVDDIEIRPEDLRIDTF 179
Query: 203 SSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGV 262
S G+ + + A I H+PTGI V ER+ N+ A+ L++KL+ + E+
Sbjct: 180 RSSGAGGQHVNKTESAVRITHLPTGIVVSCQQERSQMQNRAVAMMMLRSKLVELKIEEQN 239
Query: 263 SNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
++ I+ + W + R YV PY LV+D ++G+++ + +V+DG + PFI ++
Sbjct: 240 KEMAQIRGPQMEIAWGSQIRSYVFQPYTLVKDHRSGVEVGNAQAVIDGELDPFIYGYLEK 299
Query: 323 R 323
R
Sbjct: 300 R 300
>gi|417798692|ref|ZP_12445852.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21310]
gi|421149526|ref|ZP_15609184.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|334275553|gb|EGL93842.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21310]
gi|394330443|gb|EJE56535.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
Length = 331
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVIYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|254386617|ref|ZP_05001914.1| peptide chain release factor 2 [Streptomyces sp. Mg1]
gi|194345459|gb|EDX26425.1| peptide chain release factor 2 [Streptomyces sp. Mg1]
Length = 369
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 170/327 (51%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA+ E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLAVLFELAQ-EMDDADTLAEAENEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 TSVRKALDEMEVRTLLSGEYAEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E+S ++I + +L ++ + G+ + A I H+PTGI V ER+
Sbjct: 223 PV-VESSDHVEIDEGELRIDVYRASGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMDALKDGG--SSWGNQMRSYVLHPYQMVKDLRTEFE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG I F+EA I R+ +
Sbjct: 340 VGNPQAVLDGEIDGFLEAGIRWRKQQE 366
>gi|303279527|ref|XP_003059056.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458892|gb|EEH56188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 337
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 14/318 (4%)
Query: 6 NLWDDPTKSNEVLVKLAD---SLKVVNALKDLRYKAEEA-KLIAQLAEMEAIDYGLFKRA 61
LWDDP + V+ +LAD L++ A +D A A ++IA + + L
Sbjct: 21 TLWDDPKNAKAVMEQLADVREQLELAAAFEDKLGDARTALEMIADDPSSDVVPE-LASEI 79
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A + L+ +E +LL G D GA+V I AG G WAE+L + YV WA +
Sbjct: 80 SDAIASLEAALETWETRRLLVGTYDALGATVFINAGFGGFDAHEWAERLESCYVAWARRR 139
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPN--GSFPH--EATL 177
G+ RV + + G++S T+E + +A+GYL+ E GAH ++ G P +
Sbjct: 140 GFAVRVEARTPGEEVGLRSVTLEIDGRFAYGYLASEKGAHRMVRIGGVAGQTPRGRHSNF 199
Query: 178 ACVDVVPLFLETSPDLQISDEDLL-----FSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
VDV P E + + S D + S G+ + + A ++H+PTGI V+
Sbjct: 200 VAVDVAPTLEEKARSIHWSPYDRVRVITTMRSGGAGGQNVNKVETAVRMKHLPTGIVVRC 259
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ N+ KA+ RLKAKL + E+ +++V+ ++ + + ++ R YV HPYKLV
Sbjct: 260 EEERSQAMNRAKAIARLKAKLAAVAEERRLADVAAVRGDVVRAERGQQIRNYVLHPYKLV 319
Query: 293 QDVKTGIQLPDFNSVLDG 310
+DV+TG++ D + VL G
Sbjct: 320 KDVRTGVETSDVDGVLSG 337
>gi|300853467|ref|YP_003778451.1| peptide chain release factor B [Clostridium ljungdahlii DSM 13528]
gi|300433582|gb|ADK13349.1| peptide chain release factor B [Clostridium ljungdahlii DSM 13528]
Length = 329
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 162/326 (49%), Gaps = 13/326 (3%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
N WD ++ EV + L + L + N L+ + +A+++A +AE E D K
Sbjct: 7 NFWDHLERAQEVTSEEKFLNEKLDMYNKLES---RINDAEILAHIAEEEE-DVSDCKDIL 62
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ ++D+ ++ LL G D A + + G G + W E LL MY RWA+K G
Sbjct: 63 SEVEDIENIIDKLKIEILLSGEYDKNNAILNLHVGVGGTDAQDWTEMLLRMYTRWAEKSG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +D + G+KS ++ E+A+GYL E G H L+ N + + + A V
Sbjct: 123 YKVETLDILPADDAGIKSVSLRIIGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASV 182
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P L D+ I EDL + S G+ + + A I HIPTGI VQ ER+
Sbjct: 183 EVLP-ELTKDQDIDIRPEDLRVDTYRSSGAGGQHVNKTESAVRITHIPTGIVVQCQNERS 241
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ LK+KL+ + + + E W + R YV HPY LV+D +T
Sbjct: 242 QHYNRETAMLMLKSKLVELKERAHKEKIEDLAGELKDMGWGSQIRSYVFHPYTLVKDHRT 301
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G++ + +SV+DG I FI A++ +
Sbjct: 302 GVENGNVSSVMDGEIDNFILAYLRQQ 327
>gi|420199740|ref|ZP_14705411.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM031]
gi|394271490|gb|EJE15983.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM031]
Length = 333
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D + K
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDDDMKKE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG I PFIEA++
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYL 324
>gi|212640382|ref|YP_002316902.1| protein chain release factor B [Anoxybacillus flavithermus WK1]
gi|212561862|gb|ACJ34917.1| Protein chain release factor B [Anoxybacillus flavithermus WK1]
Length = 329
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A++LK +V + L + E ++ +L + E D L K
Sbjct: 5 DFWDD-QKAAQSVISEANALKDLVGEFRSLEERFENLEVTYELVKEEP-DEELQKELVAE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ +SK ++E+ LL P D A + + G+ G + WA LL MY RWA+K+GY+
Sbjct: 63 AKKLSKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGYK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + GVKS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLF-----LETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
VVP F ++ PD D + S G+ + A I HIPTGI V ER
Sbjct: 182 VVPEFDDNIEIDVRPDEIKVD---TYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQSER 238
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ KA+N LKAKL E+ + ++ I+ E W + R YV HPY LV+D +
Sbjct: 239 SQIKNREKAMNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWGSQIRSYVFHPYSLVKDHR 298
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T ++ + +V+DG I FI+A++ S+
Sbjct: 299 TNTEVGNVQAVMDGEIDVFIDAYLRSK 325
>gi|374997883|ref|YP_004973382.1| peptide chain release factor 2 [Desulfosporosinus orientis DSM 765]
gi|357216249|gb|AET70867.1| peptide chain release factor 2 [Desulfosporosinus orientis DSM 765]
Length = 367
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 166/324 (51%), Gaps = 7/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +++ +LA V ++L + EE + QLA ME D L +
Sbjct: 43 DLWDDPENAQKIMQELALHQNKVKLFQELEEELEETATLWQLA-MEEDDVSLEGDVAQGV 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A +T+ AG+ G + W + L +YVRW ++ GY+
Sbjct: 102 KALYQRFEALELELLLSGQYDRNNAILTLHAGAGGTEAQDWVQMLYRLYVRWGERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KSAT+ F E A+GY E G H L+ + S + A VDV+
Sbjct: 162 ETLDFLPGEEAGIKSATLSFSGENAYGYAKSEKGVHRLVRISPFDASGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E + ++ I EDL + S G+ + A I H+PTGI VQ ER+
Sbjct: 222 PEVTEDN-EITIDTEDLRIDTYRSGGAGGQHVNKTDSAIRITHLPTGIVVQCQSERSQTQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK+ A+ L+AKLL + ++ + ++ I+ E W + R YV HPY LV+D +T ++
Sbjct: 281 NKLAAMRVLQAKLLELKRKEQEAEITEIRGEQQEIAWGSQIRSYVFHPYSLVKDHRTNVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ ++V+DG I FI A++ +
Sbjct: 341 TGNVSAVMDGEIDEFIAAYLQKTK 364
>gi|421858651|ref|ZP_16290915.1| protein chain release factor B [Paenibacillus popilliae ATCC 14706]
gi|410831824|dbj|GAC41352.1| protein chain release factor B [Paenibacillus popilliae ATCC 14706]
Length = 340
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 170/335 (50%), Gaps = 16/335 (4%)
Query: 1 MVRNY-------NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI 53
M+ NY + WDD ++ ++ +L +V L+ E+ +++ +LA+ E
Sbjct: 1 MIANYEEKMSAPDFWDDNERAQGMISELNAIKGIVEEYSSLQQDYEDTQMMLELADEEH- 59
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D GL + + ++Q+E+ LL P D A + + G+ G + W + LL M
Sbjct: 60 DEGLAQELGEGVKQLYGRVEQFELQLLLSEPYDKMNAILELHPGAGGTESQDWGQMLLRM 119
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGS 170
Y RWA++ G++ V+D G+KS T+ + A+GYL E G H L+ F +
Sbjct: 120 YTRWAEQRGFKVEVLDYLPGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSG 179
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
H + ++C DVVP + D+++ +EDL + + G+ + A I HIPTG
Sbjct: 180 RRHTSFVSC-DVVPEITD-DVDIEVRNEDLKIDTYRASGAGGQHINTTDSAVRITHIPTG 237
Query: 228 IAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSH 287
I V ER+ N+ +A+ L++KL E+ ++ I+ + + W + R YV H
Sbjct: 238 IVVTCQTERSQIKNRERAMTLLRSKLYERKIEEQQKQLAEIRGDQMDIAWGSQIRSYVFH 297
Query: 288 PYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
PY +V+D +T ++ + +V+DG+I FIEA++ +
Sbjct: 298 PYSMVKDHRTQVETGNVGAVMDGDIDEFIEAYLRT 332
>gi|260587039|ref|ZP_05852952.1| peptide chain release factor 2 [Blautia hansenii DSM 20583]
gi|331082810|ref|ZP_08331932.1| peptide chain release factor 2 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542529|gb|EEX23098.1| peptide chain release factor 2 [Blautia hansenii DSM 20583]
gi|330400139|gb|EGG79788.1| peptide chain release factor 2 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 372
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 164/326 (50%), Gaps = 21/326 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ +S +++ +L+ + L+ + EE +L+ I+ G +
Sbjct: 46 FWDNAERSQKMMKELSALKGDMEIYHKLQNQKEEIELM--------IEMGYEENDPSIVP 97
Query: 67 DVSKLLDQY-------EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
D+ ++LD++ + LL G D + A VT+ AG+ G WA L MY+RWAD
Sbjct: 98 DIQEMLDEFIQDFEHIRIKTLLSGEYDKDNAIVTLHAGAGGTESCDWASMLYRMYLRWAD 157
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
++G+ V+D G+KS T + E A+GYL E G H L+ N + + +
Sbjct: 158 RQGFSTEVLDYLDGDEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSF 217
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
DV+P +E D++I+ +DL + S G+ + A I H+PTGI VQ
Sbjct: 218 VSCDVMP-DIEEDVDVEINPDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQN 276
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ F NK KA+ LKAKL ++ ++ +S I+ E W + R YV PY +V+D
Sbjct: 277 ERSQFQNKDKAMQMLKAKLYLLKQQENEKKLSGIQGELTEIGWGNQIRSYVMQPYTMVKD 336
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + + ++V++GNI FI A++
Sbjct: 337 HRTNEETGNVDAVMNGNIDNFINAYL 362
>gi|386830396|ref|YP_006237050.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|385195788|emb|CCG15397.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 369
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVIYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>gi|358065605|ref|ZP_09152141.1| peptide chain release factor 2 [Clostridium hathewayi WAL-18680]
gi|356696091|gb|EHI57714.1| peptide chain release factor 2 [Clostridium hathewayi WAL-18680]
Length = 332
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 157/319 (49%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP +S ++ + + V + + L + EE L+ ++ E D +
Sbjct: 6 FWDDPERSTRIMKEAKNLKDTVESYRRLETQFEEIGLLIEMG-YEENDPEVIPEIQEMMT 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + L+ +S LL G D A + + AG+ G W L MY R+ADK G+
Sbjct: 65 EFEEKLENLRISTLLSGEYDSSNAILKLNAGAGGTESCDWCSMLYRMYCRFADKMGFTTE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS TI+ A+GYL E G H L+ N + + + DV+P
Sbjct: 125 VLDYLDGDEAGIKSVTIQVNGVNAYGYLKSEHGVHRLVRISPFNAAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D+ I+ +DL + S G+ + A I HIPTG+ VQ ER+ F N
Sbjct: 185 -DIEEDLDVDINQDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGVVVQCQNERSQFQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKL ++ ++ +N+S I+ + W + R YV PY +V+D +T +
Sbjct: 244 KDKAMQMLKAKLFLLKQQENAANLSDIRGDVAEIGWGNQIRSYVLQPYTMVKDHRTNEES 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDGN+ FI A++
Sbjct: 304 GNVSAVLDGNLDAFISAYL 322
>gi|320095989|ref|ZP_08027602.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977060|gb|EFW08790.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 178
str. F0338]
Length = 372
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 175/329 (53%), Gaps = 14/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ EV L+ ++ + + + ++ + + ++A + + A
Sbjct: 43 DLWDDPARAQEVTSALSHRQSELDRVVRMGERIDDLEAMVEMAGEDPDEAEEILDEAAAD 102
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K + E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LDTLKKDVSDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHGYA 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E++ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 223 IPL-IESTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKSQI 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ AL L+++LLV+ E+ + K+E ++ W + R YV PY++V+D++
Sbjct: 282 QNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQPYQMVKDLR 337
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T + + +V DG+I FI A I R++
Sbjct: 338 TEFESGNPQAVFDGDIDGFINAGIRWRKN 366
>gi|406983802|gb|EKE04960.1| peptide chain release factor 2 [uncultured bacterium]
Length = 350
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 169/321 (52%), Gaps = 23/321 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD K+ VL L+ ++ +KD+ ++ +++ ++ ++E ++
Sbjct: 43 LWDDQNKAKAVLQNLSGLKAELDEIKDV---SDTLEILNEVEDVEELN------------ 87
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +L+ + E+ L +D + +TI AG G WA+ L MY+R+ +++G+
Sbjct: 88 KLGRLIAKLELKSYLSATHDSKNTIITIHAGQGGTEAMDWAQMLFRMYIRYCERKGFATE 147
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+K+ T E + YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 148 TIDSTSGEEAGLKTVTFEIKGRYAYGYLKGEAGTHRLVRQSPFNANDLRQTSFALVEVLP 207
Query: 185 LFLETS--PDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHF 239
LE S PD+QI DE+L + G Q++ K + ++ H+PTGI + + ER
Sbjct: 208 -DLEASDLPDIQIKDEELDWQFTRAGGHGGQNVNKVSTAVRLTHLPTGIVITARTERFQE 266
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ AL L+AKL + E +N+ IK E W + R YV HPYK+V+D++T +
Sbjct: 267 QNRKIALGLLRAKLWIRQQEMEKNNLKDIKGEYKPASWGNQIRSYVLHPYKMVKDLRTEV 326
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ + + VLDG + FIEA +
Sbjct: 327 ESGNPDRVLDGELDEFIEAEL 347
>gi|350569131|ref|ZP_08937528.1| peptide chain release factor RF2 [Propionibacterium avidum ATCC
25577]
gi|348660709|gb|EGY77416.1| peptide chain release factor RF2 [Propionibacterium avidum ATCC
25577]
Length = 368
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ K++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRSRIEDVKVLLEFA-ADGDDAESLAEATSEA 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY+
Sbjct: 103 AKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYKI 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVLDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 223 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 282 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 340 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 368
>gi|332295608|ref|YP_004437531.1| peptide chain release factor 2 [Thermodesulfobium narugense DSM
14796]
gi|332178711|gb|AEE14400.1| peptide chain release factor 2 [Thermodesulfobium narugense DSM
14796]
Length = 363
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 167/323 (51%), Gaps = 14/323 (4%)
Query: 4 NYNLWDDPTKSNEVLVKLADSL-KVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
N +W D KS+ L +LAD+L K ++ +L E+ L E D G
Sbjct: 38 NPEIWQDVQKSSN-LTQLADNLQKSIDEWNNLNSSFEDF-----LFWTEFQDEGAENEIA 91
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++ K+L++ E+ LL G D A ++I AG+ G+ + +AE LL MY+RW +K
Sbjct: 92 ESYKNLVKILEELEVKALLSGKYDSYDAMLSISAGAGGVDAQDFAEMLLRMYIRWGEKNK 151
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLACV 180
Y +VD+ G++SATI F+ +Y++G+L E G H LI F + + V
Sbjct: 152 YSVELVDQSPGDEAGIRSATIFFKGKYSYGFLKSEQGVHRLIRLSPFDFNNRRHTSFVLV 211
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V PL +E ++ + +E++ F + G+ + A I H+PTGI V ER+
Sbjct: 212 EVTPL-IENVKEINVKNEEIKIETFRASGAGGQHVNKTDSAVRITHLPTGIVVTCRNERS 270
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
F NK A+ L ++L + E+ +S K E + W ++ R YV HPY +V+D +T
Sbjct: 271 QFQNKEAAMKILISRLNSLYEEKQKDKMSEFKGETDAS-WGKQIRTYVMHPYTMVKDHRT 329
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
+++ D VLDGNI F +A +
Sbjct: 330 NVEIGDVYGVLDGNIDEFQKAFL 352
>gi|453049954|gb|EME97515.1| peptide chain release factor 2 [Streptomyces mobaraensis NBRC 13819
= DSM 40847]
Length = 368
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 174/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + ++ ++ +LAE E A
Sbjct: 44 SLWDDPEAAQKITSQLSHLQAELRKAETLRGRIDDLGVLFELAEAEDDAD-ALAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 VSVRKALDEMEVRTLLSGEYDAREAVVNIRAEAGGVDASDFAERLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +ET+ ++I + DL ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VETTDHVEIDESDLRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K ++ W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDS-GGSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG+I F+EA I R+ +
Sbjct: 341 VGNPQAVLDGDIDGFLEAGIRWRKQQE 367
>gi|322420980|ref|YP_004200203.1| peptide chain release factor 2 [Geobacter sp. M18]
gi|320127367|gb|ADW14927.1| Peptide chain release factor 2 [Geobacter sp. M18]
Length = 371
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 158/316 (50%), Gaps = 6/316 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + +VL K V A ++L +A + + + +L E D +
Sbjct: 43 DFWNDAENAQKVLKARTAMEKDVTAWENLDRQARDIRELIELGSEEE-DEATLAEVAAMN 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + Q E ++L GP+D GA V+I +G+ G + WAE LL MY+R+ +K+G+R
Sbjct: 102 AELENGVSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDWAEMLLRMYLRYCEKKGWRT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D G+K T E+A+GYL + G H L+ + S + A V V
Sbjct: 162 EITDYQEGDGAGIKGVTFAATGEFAYGYLKADAGIHRLVRISPFDSSARRHTSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ E +++I++ DL + S G+ + A I H+PTGI V ER+
Sbjct: 222 PVIEEEDIEVKIAESDLRIDTYRSSGAGGQHVNTTDSAIRITHLPTGIVVACQSERSQHM 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L++KL + + + S I E W + R YV HPYK+V+D++TG++
Sbjct: 282 NKATAMKVLRSKLYEMELREREAKASDIAGEKKEIGWGSQIRSYVLHPYKMVKDLRTGVE 341
Query: 301 LPDFNSVLDGNIKPFI 316
+ ++VLDG + F+
Sbjct: 342 SGNPDAVLDGALDDFV 357
>gi|291523975|emb|CBK89562.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
rectale DSM 17629]
Length = 330
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 153/320 (47%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP KS + +L V L+ + E+ + + ++ E D L +
Sbjct: 5 DFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEMG-YEENDESLIPEIQQML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D D M LL G D A + + AG+ G WA L MY +WADK+G+
Sbjct: 64 DDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWAAMLFRMYSKWADKKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D+++ DED+ + S G+ + A I H P+GI VQ ER+
Sbjct: 184 P-DIEEDLDIEVKDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQCQNERSQHM 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ E+ + + I+ E W + R YV PY +V+D +T ++
Sbjct: 243 NKDKAMQMLKAKLYLLKQEENAAKEAGIRGEVKEIGWGSQIRSYVLQPYTMVKDHRTDVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++VLDGNI FI ++
Sbjct: 303 TGNADAVLDGNIDIFINGYL 322
>gi|73748409|ref|YP_307648.1| peptide chain release factor 2 [Dehalococcoides sp. CBDB1]
gi|452203414|ref|YP_007483547.1| peptide chain release factor 2 [Dehalococcoides mccartyi DCMB5]
gi|452204850|ref|YP_007484979.1| peptide chain release factor 2 [Dehalococcoides mccartyi BTF08]
gi|73660125|emb|CAI82732.1| peptide chain release factor 2 [Dehalococcoides sp. CBDB1]
gi|452110473|gb|AGG06205.1| peptide chain release factor 2 [Dehalococcoides mccartyi DCMB5]
gi|452111906|gb|AGG07637.1| peptide chain release factor 2 [Dehalococcoides mccartyi BTF08]
Length = 356
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 161/322 (50%), Gaps = 9/322 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D + + + KLA + + + L + + + +LA + D L
Sbjct: 32 NPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRIND---LTELAVLSREDPSLSNEIEH 88
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ LD E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 89 EISGLTAELDSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGF 148
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+
Sbjct: 149 GMEILDQSLGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVE 208
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
++P E S D+ I ED+ +F S G+ A + HIP+GI V S ER+
Sbjct: 209 IMPE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQTERSQ 267
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ L +KLL + + + +K E I W + R YV HPYK+V+D +T
Sbjct: 268 HQNREIAMRILASKLLAVEIAKRAEERAKLKGERISAEWGSQIRSYVLHPYKMVKDHRTD 327
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ + +VL+G + FI A++
Sbjct: 328 YEVGNAEAVLEGELDGFISAYL 349
>gi|389862939|ref|YP_006365179.1| peptide chain release factor 2 [Modestobacter marinus]
gi|388485142|emb|CCH86686.1| Peptide chain release factor 2 [Modestobacter marinus]
Length = 370
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 171/327 (52%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + + +L+ + +++LR + ++ L+ ++A E D R
Sbjct: 43 DLWNDVEAAQALTSRLSYLQGDLRRVEELRSRLDDVGLLHEMAAEEG-DEATTAETEREL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +LD+ E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ Y
Sbjct: 102 QSIRTVLDELEVRTLLSGEYDAREALVTIRSEAGGVDAADFAEMLMRMYLRWAERHKYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDVSYAEEAGIKSATFAVKQPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 222 PV-VEQTDHVDIPENEIRVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSCQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL L+A+LLV+ + + + +K E + W + R YV HPY++V+D++T +
Sbjct: 281 NRAAALRVLQARLLVVRQAEQRAEMDALKGEG--SSWGNQMRSYVLHPYQMVKDLRTETE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ ++VLDG+I FIEA I RR +
Sbjct: 339 SGNPSNVLDGDIDAFIEAGIRWRRQQE 365
>gi|282905164|ref|ZP_06313021.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282331571|gb|EFB61083.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Btn1260]
Length = 331
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E + + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFEGEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 331
>gi|73663271|ref|YP_302052.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495786|dbj|BAE19107.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 334
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 6/322 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ +V+ K VVNA + L + E+ L +E D + + ++
Sbjct: 6 FWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQDLEQSVQ 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ +++G+
Sbjct: 65 DFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQKGFNVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D GVKS T+ + A+GYL E G H L+ + S + A DV+P
Sbjct: 125 IADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIP 184
Query: 185 LFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
F T ++ I+ +D+ F + G+ + + A I H PTGI V + ER+ N
Sbjct: 185 QFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIKN 244
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 245 REAAMKTLKSKLYQLKIEEQEQEMAEIRGEQKEIGWGSQIRSYVFHPYAMVKDHRTNEET 304
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
++V+DG+I PFIEA + S+
Sbjct: 305 GKVDAVMDGDIGPFIEAFLRSQ 326
>gi|380302988|ref|ZP_09852681.1| peptide chain release factor 2 [Brachybacterium squillarum M-6-3]
Length = 371
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V L+ + + +L + E+ +++ +LA E D A R
Sbjct: 44 DLWDDVENAQKVSAALSHAQADRRRITELSQRIEDLEVMVELA-AEEDDADTLAEAERDF 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K +D+ E+ LL G D A VTI+AG+ G+ +AE LL MY RWA++ Y
Sbjct: 103 AGIRKTIDELEVRTLLSGEYDERSAVVTIRAGAGGVDAADFAEMLLRMYTRWAERHQYTV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVTAPFAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E++ +++ + +L +F S G+ + A + HIPTGI V E++
Sbjct: 223 PL-IESTDSIEVPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL ++++LL++ + + + + + W + R YV +PY++V+D++T Q
Sbjct: 282 NRAAALRVMQSRLLLLKKAEEAAERKELAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEYQ 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ +SV DG I FI+A I R
Sbjct: 341 EGNPSSVFDGEIDEFIDAGIRWR 363
>gi|409390739|ref|ZP_11242451.1| peptide chain release factor 2 [Gordonia rubripertincta NBRC
101908]
gi|403199116|dbj|GAB85685.1| peptide chain release factor 2 [Gordonia rubripertincta NBRC
101908]
Length = 373
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 174/331 (52%), Gaps = 15/331 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
+LW+D + +V +L+ + + + +LR + E+ + +LAE E
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVHYELAESEEGEDKAAALADADE 104
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R+SL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 105 ERSSLRAD--IEAMEVKTMLAGEYDSREAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 162
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 163 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 221
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 222 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 280
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 281 KSQLQNKASAMRVLQAKLLERKRQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 339
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+TG++ + +VLDG + FIEA I R +S
Sbjct: 340 RTGVEDNNPTAVLDGELDKFIEAGIRWRMAS 370
>gi|418656280|ref|ZP_13218094.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-105]
gi|443640229|ref|ZP_21124220.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21196]
gi|375034002|gb|EHS27180.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-105]
gi|443405370|gb|ELS63973.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21196]
Length = 330
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 163/327 (49%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 IYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|443673635|ref|ZP_21138693.1| Peptide chain release factor 2 [Rhodococcus sp. AW25M09]
gi|443413822|emb|CCQ17031.1| Peptide chain release factor 2 [Rhodococcus sp. AW25M09]
Length = 370
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 179/329 (54%), Gaps = 17/329 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
+LW+D + +V +L+ + + +++LR + E+ ++ +LAE E + A
Sbjct: 43 DLWNDQEHAQQVTSQLSHAQAELRRVEELRQRLEDMPVMYELAEGEEGEAATAATADADA 102
Query: 63 -RASL--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
RASL D++ + E+ LL G D A V I++G+ GI WAE L+ MY+RWA+
Sbjct: 103 ERASLREDIAAM----EVRTLLSGEYDARDALVNIRSGAGGIDAADWAEMLMRMYIRWAE 158
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
K GY V D + G+KSAT + Y +G LS E G H L+ + + +
Sbjct: 159 KHGYGVEVYDTSYAEEAGIKSATFAVKAPYTYGTLSVEQGTHRLVRISPFDNQGRRQTSF 218
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A V+V+P+ +ET+ ++I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 AEVEVLPV-VETTDHIEIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQN 277
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
E++ NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D
Sbjct: 278 EKSQLQNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKD 336
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
++T ++ + ++VLDG+I F+E+ I R
Sbjct: 337 LRTEYEVNNPSTVLDGDIDGFLESGIRWR 365
>gi|304439754|ref|ZP_07399652.1| peptide chain release factor RF2 [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371741|gb|EFM25349.1| peptide chain release factor RF2 [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 368
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 158/323 (48%), Gaps = 9/323 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + + + + + + LK L + K + ++ EME DY +K +
Sbjct: 47 FWDDTESAQKTIKEFNHYNRKIENLKSLTDEISSLKDLLEIMEMEG-DYSSYKDFKDDLI 105
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + ++++ LL D + I AG+ G + WA LL MY R+ +++G+
Sbjct: 106 KLEKHAEDFKIATLLNDKYDDNDVILQIHAGAGGTEAQDWASMLLRMYTRYCEQKGFSAE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++D G+KSAT+ + + +GYL GE G H L+ F + H + + VDV
Sbjct: 166 ILDLQKEDEAGIKSATLLIKGDSCYGYLKGEKGVHRLVRISPFDSNKRRH-TSFSSVDVY 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE D+ I EDL + S G+ + A I HIPTG+ VQ ER+
Sbjct: 225 PE-LEDVEDVDIKPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVVQCQNERSQIQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKAKL+ + E+ + + W + R YV PY +V+D +T +
Sbjct: 284 NRETAMKLLKAKLISLAQEEQKEAIEDLSGNYSQIAWGSQIRSYVFQPYTMVKDHRTNEE 343
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D SV+DGN+ PFI A++ S+
Sbjct: 344 IGDVESVMDGNLDPFINAYLQSK 366
>gi|405982168|ref|ZP_11040492.1| peptide chain release factor 2 [Actinomyces neuii BVS029A5]
gi|404390959|gb|EJZ86025.1| peptide chain release factor 2 [Actinomyces neuii BVS029A5]
Length = 377
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 175/340 (51%), Gaps = 27/340 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-----------AQLAEMEAID 54
+LWDD K+ V KL+ + + ++ + ++ E+ + + QL EA
Sbjct: 49 DLWDDQEKAQAVTSKLSHAQSELERVQKMEHRLEDTQAMFELAEESEGEERQLLHEEA-- 106
Query: 55 YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
+A A+LD K L + E+ L+ G D A VTI++G+ G+ +A+ LL MY
Sbjct: 107 -----QADLAALD--KDLSELEIRTLMSGEYDERSAVVTIRSGAGGVDAADFAQMLLRMY 159
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
RWA++ GY +V+D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 160 TRWAERHGYSYKVMDTSYAEEAGIKSATFQVNEPYAYGRLSVEGGTHRLVRISPFDNQGR 219
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + A V+V+PL +E++ + I D DL +F S G+ + A + H+PTGI
Sbjct: 220 RQTSFAAVEVIPL-IESTDHIDIPDSDLKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIV 278
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
V E++ N+ AL L+++LL + E+ + +K + + W + R YV P+
Sbjct: 279 VSMQDEKSQIQNRASALRVLQSRLLALRQEEEKAKRDELKGDVKAS-WGDQMRSYVLQPF 337
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++V+D++T + + SV DG++ FI+A I R+ ++
Sbjct: 338 QMVKDLRTNYESGNPTSVFDGDLDGFIDAGIRWRKGQKSE 377
>gi|259506494|ref|ZP_05749396.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314]
gi|259165914|gb|EEW50468.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314]
Length = 387
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 166/322 (51%), Gaps = 10/322 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + +V +L+ + + +LR + ++ ++ +LAE E D L
Sbjct: 64 LWDNPDHAQQVTSELSHVQAELRKVTELRQRLDDLPIMYELAEEEGDDTSLVDEEL---A 120
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ ++ E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K G++
Sbjct: 121 DLRTGVEALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKHGHKVD 180
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+P
Sbjct: 181 VYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVLP 240
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +E + I D ++ ++ S G+ + A + HIPTGI V E++ N
Sbjct: 241 V-VEQVDSIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQN 299
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T ++
Sbjct: 300 KASAMRVLQAKLLEKKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYEV 358
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
D + VLDG+I +EA I R
Sbjct: 359 NDPSKVLDGDIDGLLEAGIRWR 380
>gi|25027367|ref|NP_737421.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314]
gi|23492648|dbj|BAC17621.1| putative translation releasing factor RF-2 [Corynebacterium
efficiens YS-314]
Length = 389
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 166/322 (51%), Gaps = 10/322 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + +V +L+ + + +LR + ++ ++ +LAE E D L
Sbjct: 66 LWDNPDHAQQVTSELSHVQAELRKVTELRQRLDDLPIMYELAEEEGDDTSLVDEEL---A 122
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ ++ E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K G++
Sbjct: 123 DLRTGVEALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKHGHKVD 182
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+P
Sbjct: 183 VYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVLP 242
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +E + I D ++ ++ S G+ + A + HIPTGI V E++ N
Sbjct: 243 V-VEQVDSIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQN 301
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T ++
Sbjct: 302 KASAMRVLQAKLLEKKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYEV 360
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
D + VLDG+I +EA I R
Sbjct: 361 NDPSKVLDGDIDGLLEAGIRWR 382
>gi|187777237|ref|ZP_02993710.1| hypothetical protein CLOSPO_00784 [Clostridium sporogenes ATCC
15579]
gi|187774165|gb|EDU37967.1| peptide chain release factor 2 [Clostridium sporogenes ATCC 15579]
Length = 325
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 166/323 (51%), Gaps = 14/323 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
++N N W+D ++ ++ + L D L N LK+ E+ ++Q+ E D G
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLSKYNHLKNT---IEDIIGLSQMLSEEDDDMG-- 55
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K ++ + +D++++ LL G D A +T+ +G G + W + L MY RWA
Sbjct: 56 KEILSEYKNIKEEIDRFKIETLLSGEYDRNNAIMTLHSGVGGTDAQDWTDMLFRMYTRWA 115
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + + +
Sbjct: 116 EKEGFTVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQTS 175
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A ++V+P L +++I EDL + + G+ + + A I HIPTGI VQ
Sbjct: 176 FASIEVLPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQCQ 234
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ NK A+ LK++L+ + + + E W + R YV HPY LV+
Sbjct: 235 NERSQHTNKETAMKVLKSRLVELKERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVK 294
Query: 294 DVKTGIQLPDFNSVLDGNIKPFI 316
D +TG + + ++V++G+I FI
Sbjct: 295 DHRTGAETSNVDAVMNGDINIFI 317
>gi|408829971|ref|ZP_11214861.1| peptide chain release factor 2 [Streptomyces somaliensis DSM 40738]
Length = 368
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 170/327 (51%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ V + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSRLSHLQAEVRKAETLRGRIDDLAVLFELAEAED-DPDTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDEREALVTIRAEAGGVDASDFAERLQRMYLRWAERHDYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFVVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + DL ++ S G+ + A I HIPTG+ V E++
Sbjct: 223 PV-VEQTDHIEIPENDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGVVVSCQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+A+LL ++ + + +K + + W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMRVLQARLLERQRQEERAKMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG I F+EA I R+ +
Sbjct: 341 VGNPQAVLDGEIDAFLEAGIRWRKQQE 367
>gi|312792717|ref|YP_004025640.1| hypothetical protein Calkr_0478 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179857|gb|ADQ40027.1| hypothetical protein Calkr_0478 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 372
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 7/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D S +VL K+ + + L + E+ K++ +L+ ++ ++ + + +
Sbjct: 45 DFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LDEGNHEMAEELEKEL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 104 LDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAVKKGYKV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+K+ T+ E A+GYL E G H L+ + + + A V+V+
Sbjct: 164 ETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVL 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I +EDL F + G+ + + A I+HIPTGI V ER+
Sbjct: 224 P-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHK 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL LKAKLL + ++ + +K E W + R YV PY LV+D +T +
Sbjct: 283 NREIALKILKAKLLELKEKERREKIQKLKGEQTEIGWGNQIRSYVFCPYTLVKDHRTEAE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V+DG I FI A++ R+ +
Sbjct: 343 VGNVEAVMDGEIDVFINAYLKKFRNEE 369
>gi|418644339|ref|ZP_13206485.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-55]
gi|375025884|gb|EHS19277.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-55]
Length = 330
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 163/327 (49%), Gaps = 6/327 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 IYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGAESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H P+GI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
++V+DG+I PFIE+++ S D
Sbjct: 304 TGKVDAVMDGDIGPFIESYLRQTMSHD 330
>gi|256375089|ref|YP_003098749.1| peptide chain release factor 2 [Actinosynnema mirum DSM 43827]
gi|255919392|gb|ACU34903.1| peptide chain release factor 2 [Actinosynnema mirum DSM 43827]
Length = 367
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 168/328 (51%), Gaps = 9/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ V +L+ + + LR + ++ ++ +LAE E D G A
Sbjct: 43 DLWDDQEKAQRVTSQLSHKQGELRRVTALRGRLDDLGVLYELAEDEG-DEGSAAEADTER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A VT++A + G+ +AE LL MY RWA++ Y
Sbjct: 102 AKLREEISSLEVRTLLSGEYDARDALVTVRAEAGGVDAADFAEMLLRMYSRWAERHNYAV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+VV
Sbjct: 162 DVFDTSYAEEAGIKSATFRVTAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I +++L ++ S G+ + A + HIPTGI V ER+
Sbjct: 222 PV-VEQTDHVEIDEKELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQLQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + +K + W + R YV HPY++V+D++T +
Sbjct: 281 NKATAMAVLQAKLLERQRQEEQAKMDALKDSG--SSWGNQMRSYVLHPYQMVKDLRTEHE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ + ++VLDG I F+EA I R+ T
Sbjct: 339 VGNPSAVLDGEIDDFLEAGIRWRKQRQT 366
>gi|149183327|ref|ZP_01861766.1| peptide chain release factor 2 [Bacillus sp. SG-1]
gi|148848954|gb|EDL63165.1| peptide chain release factor 2 [Bacillus sp. SG-1]
Length = 327
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 166/324 (51%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ V+ + ++VN KD++ E ++ +L + E D L + +
Sbjct: 5 DFWNDQQQAQGVINEANGLKELVNEYKDMQEMQENLEVTLELVKEEN-DAELQEELVEET 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D++K L++YE+ LL P+D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 64 KDLNKRLNEYELQLLLSEPHDKNNAILELHPGAGGTESQDWGSMLLRMYQRWAEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P F E ++ I EDL + + G+ + A I H PTG+ V ER+
Sbjct: 183 MPEFNE-EIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHQPTGVVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ LKAKL E+ ++ I+ E W + R YV HPY +V+D +T
Sbjct: 242 KNREQAMKMLKAKLYQKRIEEQEQELAEIRGEQKDIGWGSQIRSYVFHPYSMVKDHRTNT 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG+I FI A++ SR
Sbjct: 302 EMGNVQAVMDGDINGFINAYLRSR 325
>gi|441507575|ref|ZP_20989501.1| peptide chain release factor 2 [Gordonia aichiensis NBRC 108223]
gi|441448651|dbj|GAC47462.1| peptide chain release factor 2 [Gordonia aichiensis NBRC 108223]
Length = 371
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 170/328 (51%), Gaps = 15/328 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + ++ + +LAE E G + A A
Sbjct: 43 DLWNDQEHAQKVTSELSHAQSELRRVTELRQRLDDMPVHYELAEAEE---GEDRSAALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + + E+ +L G D A V I++G+ G+ WA+ L+ MYVRWA+K
Sbjct: 100 ADAERESLRSDIQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYVRWAEK 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 160 HGYGVEVYDTSYAEEAGLKSATFAVKSPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKASAMRVLQAKLLARKQQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T ++ + +VLDG+I FIEA I R
Sbjct: 338 RTNVENNNPATVLDGDIDEFIEAGIRWR 365
>gi|298706071|emb|CBJ29181.1| peptide chain release factor [Ectocarpus siliculosus]
Length = 789
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 146/259 (56%), Gaps = 6/259 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD +E+ +LL G D G +TI AG+ G + WAE L MY+R+ + G++ ++V++
Sbjct: 198 LDAWELQQLLSGKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEE 257
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS ++ E ++A+GYL+GE G H L+ N + + A V+ P+ +
Sbjct: 258 SGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQD 317
Query: 190 S-PDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKA 245
DL + + +L S S G+ + + ++HIPTGIAV+ ER+ NK A
Sbjct: 318 DLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELA 377
Query: 246 LNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFN 305
LN LK KL+V++ EQ +++ I+ + + W ++ R YV HPYKLV+D +TG +
Sbjct: 378 LNMLKEKLVVVMQEQQTRDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQ 437
Query: 306 SVLDGNIKPFIEAHINSRR 324
V+DG++ IEA++ R
Sbjct: 438 DVMDGDLDALIEAYLRHAR 456
>gi|344997089|ref|YP_004799432.1| hypothetical protein Calla_1875 [Caldicellulosiruptor lactoaceticus
6A]
gi|343965308|gb|AEM74455.1| hypothetical protein Calla_1875 [Caldicellulosiruptor lactoaceticus
6A]
Length = 370
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 7/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D S +VL K+ + + L + E+ K++ +L+ ++ ++ + + +
Sbjct: 43 DFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LDEGNHEMAEELEKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 102 LDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAVKKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+K+ T+ E A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I +EDL F + G+ + + A I+HIPTGI V ER+
Sbjct: 222 P-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHK 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL LKAKLL + ++ + +K E W + R YV PY LV+D +T +
Sbjct: 281 NREIALKILKAKLLELKEKERREKIQKLKGEQTEIGWGNQIRSYVFCPYTLVKDHRTEAE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V+DG I FI A++ R+ +
Sbjct: 341 VGNVEAVMDGEIDVFINAYLKKFRNEE 367
>gi|441523265|ref|ZP_21004893.1| peptide chain release factor 2 [Gordonia sihwensis NBRC 108236]
gi|441457115|dbj|GAC62854.1| peptide chain release factor 2 [Gordonia sihwensis NBRC 108236]
Length = 370
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 173/325 (53%), Gaps = 9/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL--FKRAYR 63
+LW+D + V +L+ + + + +LR + ++ ++ +LAE E D + + A
Sbjct: 43 DLWNDQEHAQSVTSELSHAQSELRRVSELRSRLDDLPVLYELAEAEEGDSAVAALEDAET 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
D+ + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++ G+
Sbjct: 103 ERADLRRDIEAMEVKTMLAGEYDPREALVNIRSGAGGVDAADWAQMLMRMYIRWAEQHGH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + Y +G LS E G H L+ + + + A V+
Sbjct: 163 PVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V E++
Sbjct: 223 VLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 282 LQNKVAAMRVLQAKLLERKRLEERAQMDALKSDTGAS-WGNQMRSYVLHPYQMVKDLRTN 340
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ + ++VLDG++ FIEA I R
Sbjct: 341 VESNNPSAVLDGDLDQFIEAGIRWR 365
>gi|337744478|ref|YP_004638640.1| protein PrfB [Paenibacillus mucilaginosus KNP414]
gi|379718117|ref|YP_005310248.1| protein PrfB [Paenibacillus mucilaginosus 3016]
gi|386720677|ref|YP_006187002.1| protein PrfB [Paenibacillus mucilaginosus K02]
gi|336295667|gb|AEI38770.1| PrfB [Paenibacillus mucilaginosus KNP414]
gi|378566789|gb|AFC27099.1| PrfB [Paenibacillus mucilaginosus 3016]
gi|384087801|gb|AFH59237.1| protein PrfB [Paenibacillus mucilaginosus K02]
Length = 333
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 167/324 (51%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +++ ++ ++ L+ L + E+ +L+ +L + E D L
Sbjct: 5 DFWDDNEKAQKLIAEMNAIKGSIDQLQALTAEYEDLELMMELVQEEN-DESLASELTSGI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ +E+ LL P D A + + G+ G + WAE LL MY RWA+K G++
Sbjct: 64 TALVKKLEGFELQLLLSQPYDKLNAILELHPGAGGTESQDWAEMLLRMYRRWAEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D GVKS T+ + A+GYL E G H L+ F + H + ++C D+
Sbjct: 124 EVLDYLPGDEAGVKSVTLLIQGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DI 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P ++ +++I EDL + + G+ + A I H+PTG+ V ER+
Sbjct: 183 MP-EIDDDVEIEIRTEDLKVDTYRASGAGGQHINTTDSAVRITHMPTGVVVSCQTERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L++KL E+ ++ I+ E W + R YV HPY +V+D +TG
Sbjct: 242 KNRDRAMKMLRSKLYEKKIEEQQKQLAEIRGEVADIAWGSQIRSYVFHPYSMVKDHRTGE 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ + +V+DG++ PFI+A++ R
Sbjct: 302 ETGNVGAVMDGDLDPFIDAYLRGR 325
>gi|417905767|ref|ZP_12549566.1| peptide chain release factor 2 [Staphylococcus capitis VCU116]
gi|341598661|gb|EGS41161.1| peptide chain release factor 2 [Staphylococcus capitis VCU116]
Length = 333
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 160/325 (49%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + N W+D K+ E++ K +VN DL + ++ +L + E D + +
Sbjct: 1 MMADPNFWNDQNKAQEIIDKNNALKSIVNGYHDLANEVDDMSATRELLQ-EEYDEDMKEE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LENTVIQFKDKMDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G+ VD GVKS + + A+GYL E G H L+ + S + A
Sbjct: 120 NGFNVETVDYLPGDEAGVKSVKLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + ++ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLDEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG+I PFIEA++
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIEAYL 324
>gi|441190704|ref|ZP_20970707.1| peptide chain release factor 2 [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440613705|gb|ELQ77097.1| peptide chain release factor 2 [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 370
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 176/327 (53%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + ++LR + ++ +++ +LAE E + A
Sbjct: 44 SLWDDPESAQKITSRLSYLQGQLRRAEELRGRVDDLEVLFELAEAEGDEE-ARAEAEGEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K +D+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ADVRKAVDELEVRTLLSGEYDSREAVVNIRAEAGGVDAADFAEKLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +VLDG+I F+EA I R+ +
Sbjct: 341 VGNPQAVLDGDIDGFLEAGIRWRKQQE 367
>gi|147669189|ref|YP_001214007.1| peptide chain release factor 2 [Dehalococcoides sp. BAV1]
gi|146270137|gb|ABQ17129.1| bacterial peptide chain release factor 2 (bRF-2) [Dehalococcoides
sp. BAV1]
Length = 356
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 161/322 (50%), Gaps = 9/322 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D + + + KLA + + + L + + + +LA + D L
Sbjct: 32 NPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRIND---LTELAVLSREDPSLSNEIEH 88
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ LD E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 89 EISGLTAELDSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGF 148
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+
Sbjct: 149 GMEILDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVE 208
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
++P E S D+ I ED+ +F S G+ A + HIP+GI V S ER+
Sbjct: 209 IMPE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQTERSQ 267
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ L +KLL + + + +K E I W + R YV HPYK+V+D +T
Sbjct: 268 HQNREIAMRILASKLLAVEIAKRAEERAKLKGERISAEWGSQIRSYVLHPYKMVKDHRTD 327
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ + +VL+G + FI A++
Sbjct: 328 YEVGNAEAVLEGELDGFISAYL 349
>gi|300857995|ref|YP_003782978.1| peptide chain release factor RF-2 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288161|ref|YP_005122702.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 3/99-5]
gi|384504178|ref|YP_005680848.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 1002]
gi|384506270|ref|YP_005682939.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis C231]
gi|384508358|ref|YP_005685026.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis I19]
gi|384510450|ref|YP_005690028.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis PAT10]
gi|385807033|ref|YP_005843430.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 267]
gi|387136117|ref|YP_005692097.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300685449|gb|ADK28371.1| peptide chain release factor RF-2 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205723|gb|ADL10065.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis C231]
gi|302330275|gb|ADL20469.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 1002]
gi|308275958|gb|ADO25857.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis I19]
gi|341824389|gb|AEK91910.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis PAT10]
gi|348606562|gb|AEP69835.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371575450|gb|AEX39053.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383804426|gb|AFH51505.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 267]
Length = 366
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 166/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E D L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDDTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG++ F+EA I R
Sbjct: 338 VNDPQKVLDGDLDGFLEAGIRWR 360
>gi|410667011|ref|YP_006919382.1| peptide chain release factor 2 [Thermacetogenium phaeum DSM 12270]
gi|409104758|gb|AFV10883.1| peptide chain release factor 2 [Thermacetogenium phaeum DSM 12270]
Length = 314
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 157/294 (53%), Gaps = 8/294 (2%)
Query: 33 DLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASV 92
+++ + EE +++ +L+ ME+ D L + + K +++E L GP D A V
Sbjct: 17 EIKKEIEELQVLLELS-MESGDPELEEELAEGLESLQKTFERWEQDNLFTGPYDQRNALV 75
Query: 93 TIKAGSNGICPEIWAEQLLNMYVRWADKE-GYRGRVVDKCCCKNGGVKSATIEFEFEYAF 151
++ AG+ G + W E L MY RWA +E G++ V+D G+KS T A+
Sbjct: 76 SLHAGAGGTEAQDWVEMLFRMYTRWASQEHGFKVEVLDYLPGDEAGIKSVTFLVAGRNAY 135
Query: 152 GYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPS 206
GYL E G H L+ + S + A VDV+P +E +++I+ +DL + +
Sbjct: 136 GYLKAERGVHRLVRISPFDASGRRHTSFASVDVIPQ-VEADTEIEINPDDLRIDTYRASG 194
Query: 207 LPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVS 266
G+ + A I H+PTGI VQ ER+ AN+++A+N L+++LL + ++ ++
Sbjct: 195 PGGQYVNKTDSAVRITHLPTGIVVQCQSERSQLANRLRAMNMLRSRLLALKKQEQDEELA 254
Query: 267 CIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
++ E W + R YV PY LV+D +TG++ + +V++G I PFIEA++
Sbjct: 255 RLRGEQREIAWGNQIRSYVFEPYTLVKDHRTGLETGNVQAVMNGQIDPFIEAYL 308
>gi|291528563|emb|CBK94149.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
rectale M104/1]
Length = 330
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 153/320 (47%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP KS + +L V L+ + E+ + + ++ E D L +
Sbjct: 5 DFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEMG-YEENDESLIPEIQQML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D D M LL G D A + + AG+ G WA L MY +WADK+G+
Sbjct: 64 DDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWASMLFRMYSKWADKKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D+++ D+D+ + S G+ + A I H P+GI VQ ER+
Sbjct: 184 P-DIEEDLDIEVKDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQCQNERSQHM 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ E+ + + I+ E W + R YV PY +V+D +T ++
Sbjct: 243 NKDKAMQMLKAKLYLLKQEENAAKEAGIRGEVKEIGWGSQIRSYVLQPYTMVKDHRTDVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++VLDGNI FI ++
Sbjct: 303 TGNADAVLDGNIDIFINGYL 322
>gi|152967725|ref|YP_001363509.1| peptide chain release factor 2 [Kineococcus radiotolerans SRS30216]
gi|226726318|sp|A6WEK6.1|RF2_KINRD RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|151362242|gb|ABS05245.1| peptide chain release factor 2 [Kineococcus radiotolerans SRS30216]
Length = 367
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 170/329 (51%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V +L+ ++ ++ + + ++ +++ +L+E E D A
Sbjct: 43 SLWDDPEHAQTVTSRLSAVQAELDRIEKMGGRIDDLEVLVELSEDEH-DADSLAEAETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V + L Q E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ GY+
Sbjct: 102 NEVKEQLAQLEVRTLLSGEYDSREAIVTIRSEAGGVDAADFAEMLMRMYLRWAERRGYKS 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGIKSATFKVAAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P+ ET P+ ++ + S P G+ + A + H+PTGI V E++
Sbjct: 222 PVVAETDHVDVPENEVRVDVYRSSGPG--GQSVNTTDSAVRLTHLPTGIVVTCQNEKSQL 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L+AKLL + + + +K + W + R YV HPY++V+D++T
Sbjct: 280 QNKAAAMRVLQAKLLEKARKDRQAELDALKGDD-SGSWGNQMRSYVLHPYQMVKDLRTNY 338
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++ + +S+ DG I F+EA I R+ ++
Sbjct: 339 EVGNTSSIFDGEIDSFLEAGIRWRKQGES 367
>gi|375137430|ref|YP_004998079.1| peptide chain release factor 2 [Mycobacterium rhodesiae NBB3]
gi|359818051|gb|AEV70864.1| peptide chain release factor 2 [Mycobacterium rhodesiae NBB3]
Length = 371
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 176/330 (53%), Gaps = 11/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD +++ +V +L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 43 NLWDDQSRAQKVTSELSHTQGELRRVEELRQRLDDLPVLYELA-AEEDGAGASEAEAEAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL L+ E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++
Sbjct: 102 AELKKLREDLEAMEVRTLLSGEYDAREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 162 YGVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ ET+ ++I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 EVLPV-TETTDHIEIPESDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K ++ + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVSAMRVLQAKLLERKRLEERAEMDALKSDSGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +VLDG+I F+EA I R D
Sbjct: 340 EYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 369
>gi|444429655|ref|ZP_21224837.1| peptide chain release factor 2 [Gordonia soli NBRC 108243]
gi|443889316|dbj|GAC66558.1| peptide chain release factor 2 [Gordonia soli NBRC 108243]
Length = 381
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 172/330 (52%), Gaps = 15/330 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA----Y 62
LW+D + V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 52 LWNDQEHAQRVTSELSHAQAEYRRVSELRQRLDDLPVLYELAEAEEGDARTEAVADADSE 111
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RASL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++
Sbjct: 112 RASLRAD--IEAMEVKTMLAGEYDQRDALVNIRSGAGGVDAADWAQMLMRMYIRWAEQHS 169
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 170 YGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAE 228
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+++P+ +ET+ + I + D+ ++ S G+ + A + H PTGI V E+
Sbjct: 229 VEILPV-VETTDHIDIPETDIRVDVYRSSGPGGQSVNTTDSAVRLTHTPTGIVVTCQNEK 287
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++
Sbjct: 288 SQLQNKAAAMRVLQAKLLERKRQEERAELDALKSDGGSS-WGNQMRSYVLHPYQMVKDLR 346
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
TG++ + +VLDGNI FIEA I R ++
Sbjct: 347 TGVENNNPTAVLDGNIDEFIEAGIRWRMAT 376
>gi|357022173|ref|ZP_09084402.1| peptide chain release factor 2 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356478095|gb|EHI11234.1| peptide chain release factor 2 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 375
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 178/330 (53%), Gaps = 10/330 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + V +L+ + + +++LR + ++ ++ +LA EA + G L
Sbjct: 44 LWNDQANAQRVTSELSHAQGELRRVEELRRRVDDLPVLYELAAEEAGEDGDSLAEADEEL 103
Query: 67 DVSKL-LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K ++ E+ LL G D A VTI+AG+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 EALKAEIEALEVRTLLSGEYDEREALVTIRAGAGGVDAADWAEMLMRMYIRWAEKHGYPV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT + +A+G LS E G H L+ F N S + + A V+V
Sbjct: 164 EVYDISYAEEAGIKSATFAVKAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAEVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 223 LPV-VETTDHIDIPESDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 282 QNKLSAMRVLQAKLLELKRQEQRAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ + ++VLDG I F+EA I R D +
Sbjct: 341 EVGNPSAVLDGEIDGFLEAGIRWRNRRDAE 370
>gi|418047786|ref|ZP_12685874.1| Peptide chain release factor 2 [Mycobacterium rhodesiae JS60]
gi|353193456|gb|EHB58960.1| Peptide chain release factor 2 [Mycobacterium rhodesiae JS60]
Length = 371
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 172/331 (51%), Gaps = 9/331 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME--AIDYGLFKRAYR 63
NLW+D + + +V +L+ + + +++LR + E+ ++ +LA E A A
Sbjct: 43 NLWNDQSHAQKVTSELSHAQGELRRVEELRQRVEDLPVLYELAAEEDGAGGAEALAEADA 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 103 ELTKLREDVEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQNRRQTSFADVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +ET+ ++I + DL ++ S G+ + A + HIPTGI V E++
Sbjct: 223 VLPV-VETTDHIEIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 282 LQNKVSAMRVLQAKLLERKRLEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTD 340
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ +VLDG+I F+EA I R D D
Sbjct: 341 YEVGSPAAVLDGDIDGFLEAGIRWRNRRDDD 371
>gi|423336076|ref|ZP_17313827.1| peptide chain release factor 2 [Lactobacillus reuteri ATCC 53608]
gi|337729279|emb|CCC04406.1| peptide chain release factor 2 [Lactobacillus reuteri ATCC 53608]
Length = 332
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 165/326 (50%), Gaps = 9/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ +V+ + + + +LR + + + +L +E D ++ + AS
Sbjct: 5 DFWNDNEQAQKVIAENNILKEKRDTFVNLRDQISDLETSLELLAVEPDDD--LQKDFEAS 62
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K L+QY +++LL G D + A + I G+ G + W E LL MYVRW ++ G+
Sbjct: 63 FTNTQKALEQYRLTQLLDGEYDAKNAILEIHPGAGGTEAQDWGEMLLRMYVRWGEQHGFS 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
G+KS T+ + AFGYL E G H L+ + + + A VDV
Sbjct: 123 VETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ S ++ I DL F S G+ + + A I HIPTGI S ER+
Sbjct: 183 MPE-LDDSVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHIPTGIVTSSQAERSQL 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N++ A+N LK+KL + E+ + I+ E + W + R YV HPY LV+D +TG
Sbjct: 242 QNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWGSQIRSYVFHPYTLVKDNRTGY 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG++ PFI+A + + S
Sbjct: 302 ETHNGQAVMDGDLDPFIDAFLQWKLS 327
>gi|225020766|ref|ZP_03709958.1| hypothetical protein CORMATOL_00773 [Corynebacterium matruchotii
ATCC 33806]
gi|224946468|gb|EEG27677.1| hypothetical protein CORMATOL_00773 [Corynebacterium matruchotii
ATCC 33806]
Length = 368
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 171/329 (51%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L+ LR + + ++ +LAE E + A
Sbjct: 43 SLWDDPEHAQQVTSELSQVQVQLKRLQSLRSRLTDLPIMYELAEEEGEGADI---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ +D E++ +L G D A + I++G+ G+ WAE L+ MY+RWA+K+G +
Sbjct: 100 ADLRADIDALEVTTMLSGEYDSREALINIRSGAGGVDAADWAEMLMRMYIRWAEKQGRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E G H L+ + + + A V+V+
Sbjct: 160 EVYDISYAEEAGIKSATFIVHGEYMYGTLSVEQGVHRLVRISPFDNQARRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D +L ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEITDHIDIPDSELRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL ++ + + + + W + R YV HP+++V+D++TG +
Sbjct: 279 NKASALRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRNYVLHPFQMVKDLRTGFE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ D VLDG++ F+EA I R+ T+
Sbjct: 338 VGDPQKVLDGDLDKFLEAGIRWRKGQHTE 366
>gi|123965444|ref|YP_001010525.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9515]
gi|123199810|gb|ABM71418.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9515]
Length = 354
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 140/250 (56%), Gaps = 6/250 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D E A V+I AG+ G + W E LL MY RWAD G + D
Sbjct: 91 LDKWEFQRLLSGEYDKESAIVSINAGAGGTDAQDWVEILLRMYSRWADNNGMSLEITDLS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 NGEEAGIKSVTFEVNGKYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDQ 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
S L+I D+DL + S G+ + + A I H+P+GIAV+ ER+ NK KA+
Sbjct: 210 SISLEIPDKDLEITTSRSGGAGGQNVNKVETAVRILHLPSGIAVRCTQERSQLQNKEKAM 269
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LKAKLLVI EQ + +S IK + + W + R YV HPY++V+D++T + D +
Sbjct: 270 LLLKAKLLVIAKEQRAAEISDIKGDIVEAAWGNQIRNYVFHPYQMVKDLRTMKETNDLDG 329
Query: 307 VLDGNIKPFI 316
VL+G + FI
Sbjct: 330 VLNGGLDQFI 339
>gi|289432457|ref|YP_003462330.1| hypothetical protein DehalGT_0507 [Dehalococcoides sp. GT]
gi|288946177|gb|ADC73874.1| hypothetical protein DehalGT_0507 [Dehalococcoides sp. GT]
Length = 361
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 160/322 (49%), Gaps = 9/322 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D + + + KLA + + + L + + + +LA + D L
Sbjct: 37 NPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRIND---LTELAVLSREDPSLSNEIEH 93
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ LD E+ G D A +T+ AG+ G+ + WA LL M++RWA K+G+
Sbjct: 94 EISGLTAELDSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAAKKGF 153
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+
Sbjct: 154 GMEILDQSLGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVE 213
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
++P E S D+ I ED+ +F S G+ A + HIP+GI V S ER+
Sbjct: 214 IMP-EAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQTERSQ 272
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ L +KLL + + + +K E I W + R YV HPYK+V+D +T
Sbjct: 273 HQNREIAMRILASKLLAVEIAKRAEERAKLKGERISAEWGSQIRSYVLHPYKMVKDHRTD 332
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ + +VL+G + FI A++
Sbjct: 333 YEVGNAEAVLEGELDGFISAYL 354
>gi|404497221|ref|YP_006721327.1| peptide chain release factor 2 [Geobacter metallireducens GS-15]
gi|403378100|gb|ABB32591.2| peptide chain release factor 2 [Geobacter metallireducens GS-15]
Length = 372
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 165/321 (51%), Gaps = 9/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD K+ ++L + K++ L +A++ +++ +L E EA D G +
Sbjct: 43 GFWDDNEKAQQLLRERTRIEKILELWDRLTRQADDIRVLIELGE-EAGDEGTLDEVRALN 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K ++ E ++L G +D +I AG+ G + WAE LL MY+R+ +++G++
Sbjct: 102 DQLEKDVEGAEFQRMLSGTHDKNACYFSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+ D GVKSAT + EYA+GYL E G H L+ F + + H + A V
Sbjct: 162 EITDYQGGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFA 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P +E ++ I++ DL + S G+ + A I HIPTG+ S ER+
Sbjct: 221 FPE-IEDDIEVTINEADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGLVAASQCERSQH 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L+AKL ++ + + I E W + R YV HPYK+V+D++TG+
Sbjct: 280 MNKATAMKMLRAKLYEKELQEREAKAAEIGGEKKEIGWGSQIRSYVLHPYKMVKDLRTGV 339
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ + ++VLDG+++ FI A +
Sbjct: 340 ETGNPDAVLDGDLEEFIVAFL 360
>gi|418066617|ref|ZP_12703977.1| peptide chain release factor 2 [Geobacter metallireducens RCH3]
gi|373560110|gb|EHP86382.1| peptide chain release factor 2 [Geobacter metallireducens RCH3]
Length = 338
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 166/325 (51%), Gaps = 9/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD K+ ++L + K++ L +A++ +++ +L E EA D G +
Sbjct: 9 GFWDDNEKAQQLLRERTRIEKILELWDRLTRQADDIRVLIELGE-EAGDEGTLDEVRALN 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K ++ E ++L G +D +I AG+ G + WAE LL MY+R+ +++G++
Sbjct: 68 DQLEKDVEGAEFQRMLSGTHDKNACYFSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKT 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+ D GVKSAT + EYA+GYL E G H L+ F + + H + A V
Sbjct: 128 EITDYQGGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFA 186
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P +E ++ I++ DL + S G+ + A I HIPTG+ S ER+
Sbjct: 187 FPE-IEDDIEVTINEADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGLVAASQCERSQH 245
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L+AKL ++ + + I E W + R YV HPYK+V+D++TG+
Sbjct: 246 MNKATAMKMLRAKLYEKELQEREAKAAEIGGEKKEIGWGSQIRSYVLHPYKMVKDLRTGV 305
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRR 324
+ + ++VLDG+++ FI A + R
Sbjct: 306 ETGNPDAVLDGDLEEFIVAFLMGVR 330
>gi|451341196|ref|ZP_21911663.1| Peptide chain release factor 2 [Amycolatopsis azurea DSM 43854]
gi|449415922|gb|EMD21722.1| Peptide chain release factor 2 [Amycolatopsis azurea DSM 43854]
Length = 370
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 15/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V +L+ + + +LR + ++ ++ +LAE E D +
Sbjct: 46 NLWDDPEAAQKVTSQLSHRQSELRRISELRQRLDDLGVLYELAEAEG-DSASVAESETEL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 105 TALTKDIDGLEVRTLLSGEYDPRNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G+KSAT + Y +G LS E G H L+ F N SF H +
Sbjct: 165 DVYDISYAEEAGIKSATFKVSAPYVYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVM 224
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+ V D+++ ++ S G+ + A I HIPTG+ V E++
Sbjct: 225 PEVEEVDHVDIPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHIPTGVVVSCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+A+LL E+ + + +K + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKAAAMKVLQARLLQRKKEEERAEMDALKDGG--SSWGNQMRSYVLHPYQMVKDLRT 338
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
++ + +SVLDG I F+EA I R+ S
Sbjct: 339 EFEVGNPSSVLDGEIDGFLEAGIRWRKQS 367
>gi|429757605|ref|ZP_19290137.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 181 str.
F0379]
gi|429174743|gb|EKY16212.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 181 str.
F0379]
Length = 375
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 176/337 (52%), Gaps = 26/337 (7%)
Query: 6 NLWDDPTKSNEVLVKLADS-------LKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
+LWDDP + EV +L+ L + + DL + A+ A+ +A D
Sbjct: 43 DLWDDPAHAQEVTSQLSHRQSELDRVLAMEERIDDLEAIVDMARETAESDPADAEDIFAE 102
Query: 59 KRAYRASL--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+ ASL D+S L E+ LL G D A +TI++G+ G+ +AE LL MY+R
Sbjct: 103 AESDLASLKDDMSAL----EIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLR 158
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHE 174
WA++ GY +V+D + G+KSAT E + YA+G LS E G H L+ + +
Sbjct: 159 WAERHGYPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQ 218
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQ 231
+ A V+V+PL +E++ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 219 TSFAAVEVIPL-IESTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVS 277
Query: 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHP 288
E++ N+ AL L+++LLV+ E+ + K+E ++ W + R YV P
Sbjct: 278 MQDEKSQIQNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQP 333
Query: 289 YKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
Y++V+D++T + + +V DG+I FI A I R++
Sbjct: 334 YQMVKDLRTEYESGNPQNVFDGDIDGFINAGIRWRKN 370
>gi|269836751|ref|YP_003318979.1| hypothetical protein Sthe_0720 [Sphaerobacter thermophilus DSM
20745]
gi|269786014|gb|ACZ38157.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
20745]
Length = 369
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 158/323 (48%), Gaps = 11/323 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + V+ +L V +L +A + + + LAE D L +
Sbjct: 45 FWNDGAGAQRVMRRLGALRNQVETWTELHQQAADLRELIDLAEA---DDDLRDEIAAETE 101
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
V + ++Q E++ LL G D A + I AG+ G+ + WAE L+ MY+RWA G++ +
Sbjct: 102 RVLRGVEQLELNLLLSGQYDEHDAIMAIHAGTGGVDAQDWAEMLMRMYLRWASNRGFQAQ 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+KSATIE YA+GY GE G H L+ F H A A V+V+
Sbjct: 162 VLDVTEGEEAGIKSATIEIRGPYAYGYTKGEAGTHRLVRLSPFDQAHRRHTA-FALVEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E ++ I D+++ + S G+ + A I H+PTGI V ER+
Sbjct: 221 PQ-VEEDTEIVIRDDEIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVTCQNERSQIQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+A+L + + + +K E + W R YV PY +V D +T
Sbjct: 280 NRETAMKILRARLTELAIRKREEEQAKLKGEHVAVGWGNRIRSYVLQPYTMVTDHRTEYS 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ +V +G I PFIEA+++ +
Sbjct: 340 TSNVQAVFEGEIDPFIEAYLHQQ 362
>gi|148543602|ref|YP_001270972.1| peptide chain release factor 2 [Lactobacillus reuteri DSM 20016]
gi|184153010|ref|YP_001841351.1| peptide chain release factor 2 [Lactobacillus reuteri JCM 1112]
gi|227363435|ref|ZP_03847559.1| peptide chain release factor RF2 [Lactobacillus reuteri MM2-3]
gi|325681956|ref|ZP_08161474.1| peptide chain release factor RF2 [Lactobacillus reuteri MM4-1A]
gi|148530636|gb|ABQ82635.1| bacterial peptide chain release factor 2 (bRF-2) [Lactobacillus
reuteri DSM 20016]
gi|183224354|dbj|BAG24871.1| peptide chain release factor 2 [Lactobacillus reuteri JCM 1112]
gi|227071535|gb|EEI09834.1| peptide chain release factor RF2 [Lactobacillus reuteri MM2-3]
gi|324978600|gb|EGC15549.1| peptide chain release factor RF2 [Lactobacillus reuteri MM4-1A]
Length = 332
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 165/326 (50%), Gaps = 9/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ +V+ + + + +LR + + + +L +E D ++ + AS
Sbjct: 5 DFWNDNEQAQKVIAENNILKEKRDTFVNLRDQIGDLETSLELLAVEPDDD--LQKEFEAS 62
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K L+QY +++LL G D + A + I G+ G + W E LL MYVRW ++ G+
Sbjct: 63 FTNTQKALEQYRLTQLLDGEYDAKNAILEIHPGAGGTEAQDWGEMLLRMYVRWGEQHGFS 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
G+KS T+ + AFGYL E G H L+ + + + A VDV
Sbjct: 123 VETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ S ++ I DL F S G+ + + A I HIPTGI S ER+
Sbjct: 183 MPE-LDDSVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHIPTGIVTSSQAERSQL 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N++ A+N LK+KL + E+ + I+ E + W + R YV HPY LV+D +TG
Sbjct: 242 QNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWGSQIRSYVFHPYTLVKDNRTGY 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG++ PFI+A + + S
Sbjct: 302 ETHNGQAVMDGDLDPFIDAFLQWKLS 327
>gi|325264746|ref|ZP_08131475.1| peptide chain release factor 2 [Clostridium sp. D5]
gi|324030038|gb|EGB91324.1| peptide chain release factor 2 [Clostridium sp. D5]
Length = 310
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 136/252 (53%), Gaps = 6/252 (2%)
Query: 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG 136
+ LL G D A VT+ AG+ G WA L MY RWA+K+G+ V+D
Sbjct: 59 IQTLLTGEYDSSSAIVTLHAGAGGTESCDWANMLYRMYSRWAEKKGFSLEVLDYLDGDVA 118
Query: 137 GVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQ 194
G+K T E E E A+GYL E G H L+ N + + + A DV+P +E + D++
Sbjct: 119 GIKGVTFEVEGENAYGYLRSEKGVHRLVRISPFNAAGKRQTSFASCDVIP-DIEDNIDIE 177
Query: 195 ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKA 251
I++E+L + S G+ + A I H+PTGI VQ ER+ NK KA+ LKA
Sbjct: 178 INEEELRIDTYRSGGAGGQHVNKTSSAVRITHLPTGIVVQCQNERSQHMNKDKAMQMLKA 237
Query: 252 KLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGN 311
KL ++ ++ VS I+ E + + R YV PY LV+D +T +++ + N V+DGN
Sbjct: 238 KLYLLKQQEQADKVSGIRGEVKEIGFGSQIRSYVMQPYTLVKDHRTNMEISNVNGVMDGN 297
Query: 312 IKPFIEAHINSR 323
+ PFI A+++ +
Sbjct: 298 LDPFINAYLSMK 309
>gi|315652552|ref|ZP_07905533.1| peptide chain release factor RF2 [Lachnoanaerobaculum saburreum DSM
3986]
gi|315485181|gb|EFU75582.1| peptide chain release factor RF2 [Lachnoanaerobaculum saburreum DSM
3986]
Length = 351
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 161/325 (49%), Gaps = 17/325 (5%)
Query: 6 NLWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKR 60
+ WDDP +S +++ +L D+++ N LK E + I L EM E D L
Sbjct: 19 SFWDDPKESTKIVREAKQLKDTVEKYNKLK------SEYEDIGVLIEMGYEENDESLIPE 72
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +K +D +++ LL G D A + + AG+ G W L MY RWA K
Sbjct: 73 IEAMLEEFTKEIDALKIATLLTGEYDSSNAIMKLNAGAGGTESCDWCSMLYRMYTRWAAK 132
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
EGY V+D G+KS T++ A+GYL E G H L+ N + + +
Sbjct: 133 EGYTVDVLDILEGDEAGIKSVTLQINGLNAYGYLRSEHGVHRLVRISPFNAAGKRQTSFV 192
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
D++P +E D+ I+ +DL + S G+ + A I HIPTG+ VQ E
Sbjct: 193 SCDIMP-DIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGVVVQCQNE 251
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ F NK KA+ LKAKL ++ + V +S I+ + W + R YV PY +V+D
Sbjct: 252 RSQFQNKDKAMQMLKAKLFLLKQQANVEKLSDIRGDVKDIGWGNQIRSYVMQPYTMVKDH 311
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+TG + + +V+DG+I FI A++
Sbjct: 312 RTGAESGNVTAVMDGDIDKFIIAYL 336
>gi|163846312|ref|YP_001634356.1| peptide chain release factor 2 [Chloroflexus aurantiacus J-10-fl]
gi|222524073|ref|YP_002568544.1| peptide chain release factor 2 [Chloroflexus sp. Y-400-fl]
gi|163667601|gb|ABY33967.1| peptide chain release factor 2 [Chloroflexus aurantiacus J-10-fl]
gi|222447952|gb|ACM52218.1| peptide chain release factor 2 [Chloroflexus sp. Y-400-fl]
Length = 313
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 152/300 (50%), Gaps = 7/300 (2%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
V A DL + A + +LAE+E D L + + + Q E+ LL GP D
Sbjct: 11 VTAWNDLERRIASAAELIELAELEG-DESLTADLAAEVQAIQREVAQRELEILLSGPYDD 69
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
A ++++AG G + WA LL MY RWA++ GY ++D + G+KSATIE
Sbjct: 70 RDAFLSVQAGMGGTDAQDWAAMLLRMYTRWAERRGYTVNLIDMSEGEEAGIKSATIEIRG 129
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LF 202
YA+GY E G H LI N + + + A V+V+P ++ +P+++I EDL +F
Sbjct: 130 PYAYGYARAEAGVHRLIRLSPFNAAHTRQTSFARVEVMP-EVDDAPEVEIKPEDLRIDVF 188
Query: 203 SSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGV 262
S G+ + A I H+PTGI V ER+ N+ A+ L+A+LL ++
Sbjct: 189 RSGGHGGQGVNTTDSAVRITHLPTGIVVTCQNERSQIQNRELAMRVLRARLLERELQRQA 248
Query: 263 SNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
+ ++ E + + R Y HP LV+D +T + + +VLDG I PFIEA + +
Sbjct: 249 EERARLRGEYREAAFGNQMRTYYLHPSTLVKDHRTDYETSNVQAVLDGEIDPFIEAFLRA 308
>gi|293375591|ref|ZP_06621865.1| peptide chain release factor 2 [Turicibacter sanguinis PC909]
gi|325836763|ref|ZP_08166230.1| peptide chain release factor 2 [Turicibacter sp. HGF1]
gi|292645808|gb|EFF63844.1| peptide chain release factor 2 [Turicibacter sanguinis PC909]
gi|325491141|gb|EGC93430.1| peptide chain release factor 2 [Turicibacter sp. HGF1]
Length = 365
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 165/321 (51%), Gaps = 11/321 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD K+ EV + A+++K VN L + EE + +L +E D L
Sbjct: 45 FWDDQRKAQEV-INAANAIKDKVNTFYSLEGEVEELAVAFELI-LEEPDADLQAELESQI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+VS+ L+++E+ LL GP D A + + G+ G + WAE L MY R+A+++G++
Sbjct: 103 EEVSEHLNKFELEILLSGPYDANNAILELHPGAGGTESQDWAEMLYRMYTRYAERKGFKI 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D + G+KS TI+ + AFGY E G H L+ F +G H + +C DV
Sbjct: 163 EVLDYLVGEEAGIKSVTIKIKGTNAFGYFKAERGVHRLVRISPFDSGGRRHTSFCSC-DV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P F D++I EDL + + G+ + A I HIPT V +R+
Sbjct: 222 MPEF-SGDIDIEIRAEDLKIDTYRASGAGGQHINTTDSAVRITHIPTNTIVTCQNQRSQI 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LK+KL E+ + ++ I+ E W + R YV HPY LV+D +T
Sbjct: 281 KNREAAMEMLKSKLYQRKLEEQEAELAKIRGEVKEIGWGSQIRSYVFHPYSLVKDHRTSY 340
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
++ + SV+DG++ FI+A++
Sbjct: 341 EVGNVQSVMDGDLDGFIDAYL 361
>gi|218132301|ref|ZP_03461105.1| hypothetical protein BACPEC_00159 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992816|gb|EEC58817.1| peptide chain release factor 2 [[Bacteroides] pectinophilus ATCC
43243]
Length = 333
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 158/319 (49%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD KS E + +L +L+ ++ + + +A+ E D L
Sbjct: 6 FWDDADKSQEAMKELKSLKDSFEKYNELKQGMDDIETLIAMADEEN-DESLVPEVEEEFN 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K D + LL G D + A +T+ AG+ G W + L+ MY RWA+ +GY+
Sbjct: 65 VFEKKFDALRIGTLLSGEYDRDNAILTLHAGAGGTEACDWCQMLMRMYTRWAESKGYKTE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
VVD GVK+ TIE E E A+GYL E G H L+ N + + + DV+P
Sbjct: 125 VVDYLEGDEAGVKAVTIEIEGENAYGYLRSEHGIHRLVRISPFNAAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D++I+D+DL + S G+ + A I H+PTGI VQ ER+ N
Sbjct: 185 -DIEEDVDVEINDDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQHQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKL ++ ++ S I+ + + + R YV PY +V+D +T ++
Sbjct: 244 KDKAMQMLKAKLYLLKKQENAEKTSDIRGDVKDVNFGSQIRSYVLQPYTMVKDHRTNEEV 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ SVLDGNI PFI A++
Sbjct: 304 GNAQSVLDGNIDPFITAYL 322
>gi|237755833|ref|ZP_04584431.1| peptide chain release factor 2 [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691998|gb|EEP61008.1| peptide chain release factor 2 [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 369
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 166/330 (50%), Gaps = 27/330 (8%)
Query: 6 NLWDDPTKSNEVLV-------KLADSLKV---VNALKDLRYKAEEAKLIAQLAEMEAIDY 55
N W+D K+ E+ KL + L V +N L D L EME D
Sbjct: 44 NFWNDTKKAQEISSRRNYLGEKLEEILTVDEKINNLLDY----------ITLLEMEE-DQ 92
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
L+ + ++ K + + E+ LL D + A +T++AGS G+ W E LL MY
Sbjct: 93 ELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNAILTVQAGSGGVEACDWTEMLLRMYT 152
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA+K GY+ +VD GVKSAT+ + YA+GYL GE G H L+ + +
Sbjct: 153 RWAEKRGYQVELVDFQPDDVAGVKSATVIIKGPYAYGYLKGEQGVHRLVRISPFDANKRR 212
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + V V+P ++ ++I++EDL + + G+ + A I HIPTGI V
Sbjct: 213 HTSFSAVSVIP-EIDEDIKVEINEEDLRIDTYRAGGAGGQHVNKTDSAVRITHIPTGIVV 271
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ NK+KA+N LKAKL + E+ ++ E W + R YV PY+
Sbjct: 272 ACQSERSQLQNKLKAMNMLKAKLYQLELEKRKEKQKELEGEKKDITWGSQIRSYVFQPYQ 331
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+V+D++TG + + +V+DG I FIE+++
Sbjct: 332 MVKDLRTGFETGNIEAVMDGEIDDFIESYL 361
>gi|84494447|ref|ZP_00993566.1| peptide chain release factor 2 [Janibacter sp. HTCC2649]
gi|84383940|gb|EAP99820.1| peptide chain release factor 2 [Janibacter sp. HTCC2649]
Length = 370
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 14/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ V L+ + + + + K ++ + + ++ + E D A +
Sbjct: 43 DLWDDQEKAQAVTSLLSRAKAEYDRVTGMDTKVDDLEALVEMGQEEN-DAETLLEAEKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K + + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 KIVKKAVGELEVRTLLSGEWDERSAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YAFG LS E G H L+ + + + V+V+
Sbjct: 162 KVMDTSYAEEAGIKSATFEVNVPYAFGNLSVEGGTHRLVRISPFDNQGRRQTSFVAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I + DL +F S G+ + A + HIPTG V E++
Sbjct: 222 PL-IEGTDSIEIPENDLKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGTVVSMQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL ++++LL++ + + +K+E ++ W + R YV +PY++V+D++T
Sbjct: 281 NRAAALRVMQSRLLLL----KRAEEAAVKKEMAGDVKASWGDQMRSYVLNPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
+ + +V DG+I FIEA I
Sbjct: 337 EFETGNPTAVFDGDIDGFIEAGI 359
>gi|309791264|ref|ZP_07685795.1| hypothetical protein OSCT_1746 [Oscillochloris trichoides DG-6]
gi|308226690|gb|EFO80387.1| hypothetical protein OSCT_1746 [Oscillochloris trichoides DG6]
Length = 361
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 158/320 (49%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V+ +L V +L + + L E E D L+
Sbjct: 38 DLWNDPRTAQGVMQQLTRLKDEVAQWTNLESQLISLDELIDLTEAEG-DATLYTEIAAEV 96
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K L Q E++ LL GP D A V+I+AG G + WA+ +L MY+RWA+ GY
Sbjct: 97 RAAQKELAQRELALLLSGPYDDRDAFVSIQAGMGGTDAQDWADMMLRMYLRWAETRGYSV 156
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD G+KSAT+E YA+G + E G H LI N + + + A V+VV
Sbjct: 157 TIVDMSAGDEAGIKSATLELRGPYAYGNIRAEAGVHRLIRLSPFNAAHTRQTSFARVEVV 216
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ +P++ I EDL +F S G+ + A + H+PTGI V ER+
Sbjct: 217 P-EVDDAPEVTIKPEDLRIDVFRSGGHGGQGVNTTDSAVRLTHLPTGIVVTCQNERSQLQ 275
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+ +LL ++ + + ++ E + + R Y HP LV+D +T +
Sbjct: 276 NRETAMRVLRGRLLERELQRQLEERARLRGEHRDAAFGSQMRTYYLHPSTLVKDHRTEHE 335
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +VLDG + PFIEA++
Sbjct: 336 TSNVYAVLDGQLDPFIEAYL 355
>gi|377563641|ref|ZP_09792980.1| peptide chain release factor 2 [Gordonia sputi NBRC 100414]
gi|377529088|dbj|GAB38145.1| peptide chain release factor 2 [Gordonia sputi NBRC 100414]
Length = 371
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 170/328 (51%), Gaps = 15/328 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + ++ + +LAE E G + + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQAELRRVTELRQRLDDMPVHYELAESEE---GEARTSALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + + E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+K
Sbjct: 100 ADAERESLRSDIQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYIRWAEK 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 160 HGYGVEVYDTSYAEEAGLKSATFAVKSPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKASAMRVLQAKLLARKQQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T ++ + +VLDG+I FIEA I R
Sbjct: 338 RTNVENNNPTTVLDGDIDEFIEAGIRWR 365
>gi|420175418|ref|ZP_14681856.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM061]
gi|394243353|gb|EJD88719.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM061]
Length = 333
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +V+ L ++ +L + E D + K
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQ-EEYDEDMKKE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG I PFIEA++
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYL 324
>gi|124024426|ref|YP_001018733.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9303]
gi|123964712|gb|ABM79468.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9303]
Length = 319
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 166/307 (54%), Gaps = 10/307 (3%)
Query: 31 LKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGA 90
+K R +A+ +L ++E D + A + + LD++E+ +LL G D +GA
Sbjct: 14 IKLWRSAVNDAQATLELYDLEPDDE-MLSEAQSGLQQLRQGLDRWELERLLSGEYDKKGA 72
Query: 91 SVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYA 150
++I AG+ G + WA+ LL MY RWA+ R V + + G+KSAT+E E YA
Sbjct: 73 VLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMRVTVDELSEGEEAGIKSATVEIEGRYA 132
Query: 151 FGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFS---SP 205
+GYL E G H L+ N + + + A V+++P ++ +L I ++DL + S
Sbjct: 133 YGYLRNEKGTHRLVRISPFNANGKRQTSFAGVEIMP-KIDQEVELDIPEKDLEVTTSRSG 191
Query: 206 SLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNV 265
G+ + + A I HIPTG+AV+ ER+ NK KAL LKAKL+VI EQ + +
Sbjct: 192 GAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQNKEKALALLKAKLMVIAQEQRAAEI 251
Query: 266 SCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS--- 322
+ I+ + + W + R YV HPY++V+D++T + D +V++G + FI+ +
Sbjct: 252 ADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTAEETTDVQAVMNGELDRFIQTLLRQGVD 311
Query: 323 RRSSDTD 329
R SD D
Sbjct: 312 RPGSDMD 318
>gi|333372654|ref|ZP_08464578.1| peptide chain release factor RF2 [Desmospora sp. 8437]
gi|332971716|gb|EGK10664.1| peptide chain release factor RF2 [Desmospora sp. 8437]
Length = 331
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 160/325 (49%), Gaps = 13/325 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ +V+ + +V +K+L EE ++IA+L E D + A
Sbjct: 6 FWNDQGKAQKVIDENNHLKGIVQGVKELEEAHEELQVIAELI-AEEDDESMLPEAEEGLK 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LD++E+S LL P D A + + G+ G + WA+ LL MY RWA+ GY+
Sbjct: 65 DLKRKLDEFELSLLLSDPYDKNSAILELHPGAGGTESQDWAQILLRMYTRWAEHRGYKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + GVKS T+ + A+GYL E G H L+ + S + +V+P
Sbjct: 125 TLDFLPGEEAGVKSVTLLIKGHNAYGYLRAEKGVHRLVRISPFDSSGRRHTSFVSANVMP 184
Query: 185 LFLET------SPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
+ S D++I + S G+ + A I H+PT I V ER+
Sbjct: 185 EIEDDDEIEIRSEDIKID----TYRSSGAGGQHVNTTDSAVRITHLPTNIVVTCQSERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+ LKA+L+ E+ ++ +K E W + R YV HPY +V+D +T
Sbjct: 241 IKNRDRAMKILKARLVERQMEEKQKEIAELKGEQTEIGWGNQIRSYVFHPYSMVKDHRTQ 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
+++ + SV+DG I FIEA++ +
Sbjct: 301 VEVGNVQSVVDGEIDTFIEAYLRQQ 325
>gi|251799706|ref|YP_003014437.1| hypothetical protein Pjdr2_5745 [Paenibacillus sp. JDR-2]
gi|247547332|gb|ACT04351.1| hypothetical protein Pjdr2_5745 [Paenibacillus sp. JDR-2]
Length = 368
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 168/328 (51%), Gaps = 9/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD TK+ ++ +L VV + L E+ + + +LA+ E+ D L
Sbjct: 44 DFWDDNTKAQGIISELNAIKSVVEHYERLNADCEDLQTLIELADEESDD-SLEAEVIGGI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ +E+ LL P D A + + G+ G + WA+ L MY RWA+K G++
Sbjct: 103 ASLNEKVNGFELQLLLNQPYDKLNAILELHPGAGGTESQDWAQMLYRMYTRWAEKRGFKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D G+KS TI + A+GYL E G H L+ F + H + ++C DV
Sbjct: 163 EVLDYLDGDEAGIKSVTIAVKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP E +++I EDL + + G+ + + A I HIPTGI V ER+
Sbjct: 222 VPEITE-DIEVEIRTEDLKVDTYRASGAGGQHVNKTESAIRITHIPTGIVVACQQERSQI 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+N L++KL E+ +++ I+ E W + R YV HPY +V+D +T +
Sbjct: 281 QNRERAMNMLRSKLYERKIEEQQKHLAEIRGEQSDIAWGSQIRSYVFHPYSMVKDHRTSV 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V+DG++ FI+ ++ S+ D
Sbjct: 341 ETGNVGAVMDGDLDAFIDGYLRSQIRHD 368
>gi|419718187|ref|ZP_14245519.1| peptide chain release factor 2 [Lachnoanaerobaculum saburreum
F0468]
gi|383305632|gb|EIC96985.1| peptide chain release factor 2 [Lachnoanaerobaculum saburreum
F0468]
Length = 337
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 161/325 (49%), Gaps = 17/325 (5%)
Query: 6 NLWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKR 60
+ WDDP +S +++ +L D+++ N LK E + I L EM E D L
Sbjct: 5 SFWDDPKESTKIVREAKQLKDTVEKYNKLK------SEYEDIGVLIEMGYEENDESLIPE 58
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +K +D +++ LL G D A + + AG+ G W L MY RWA K
Sbjct: 59 IEAMLEEFTKEIDALKIATLLTGEYDSSNAIMKLNAGAGGTESCDWCSMLYRMYTRWAAK 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
EGY V+D G+KS T++ A+GYL E G H L+ N + + +
Sbjct: 119 EGYTVDVLDILEGDEAGIKSVTLQINGLNAYGYLRSEHGVHRLVRISPFNAAGKRQTSFV 178
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
D++P +E D+ I+ +DL + S G+ + A I HIPTG+ VQ E
Sbjct: 179 SCDIMP-DIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGVVVQCQNE 237
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ F NK KA+ LKAKL ++ + V +S I+ + W + R YV PY +V+D
Sbjct: 238 RSQFQNKDKAMQMLKAKLFLLKQQANVEKLSDIRGDVKDIGWGNQIRSYVMQPYTMVKDH 297
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+TG + + +V+DG+I FI A++
Sbjct: 298 RTGAESGNVTAVMDGDIDKFIIAYL 322
>gi|319951472|ref|ZP_08025281.1| peptide chain release factor 2 [Dietzia cinnamea P4]
gi|319434864|gb|EFV90175.1| peptide chain release factor 2 [Dietzia cinnamea P4]
Length = 368
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 177/334 (52%), Gaps = 9/334 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M + +LW+D ++ +V +L+ + ++LR + E+ L+ +LAE E D
Sbjct: 38 MAADPDLWNDQDRAQKVTSELSYIQADLRRCRELRQRIEDLPLMYELAEEEGGDAVEEAD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A RASL + ++ E+ +L G D A V I+AG+ G+ +AE L+ MYVRWA+K
Sbjct: 98 AERASL--REDVEAMEVKTMLSGEYDQREAVVNIRAGAGGVDAADFAEMLMRMYVRWAEK 155
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 156 NGHKVEVYDTSYAEEAGIKSATFIVKDPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 215
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET +++ + ++ ++ S G+ + A + HIPTGI V E
Sbjct: 216 EVEVLPV-VETVDSIEVPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 274
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + + + W + R YV HPY++V+D+
Sbjct: 275 KSQLQNKVAAMKVLQAKLLERKRQEERAAMDALGSGGNAS-WGNQMRSYVLHPYQMVKDL 333
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+T ++ + ++VLDG+I FIEA I R D
Sbjct: 334 RTEHEVNNPSAVLDGDIDGFIEAGIRWRMREGAD 367
>gi|302385044|ref|YP_003820866.1| hypothetical protein Closa_0615 [Clostridium saccharolyticum WM1]
gi|302195672|gb|ADL03243.1| hypothetical protein Closa_0615 [Clostridium saccharolyticum WM1]
Length = 377
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 165/320 (51%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+DP KS ++ V+LA +LK V + ++L + E+ ++ ++ E D L
Sbjct: 46 FWEDPEKSAKI-VQLAKNLKDTVQSYQELERQYEDIGVMIEMGNEEN-DPSLVPEVEEML 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L+ ++ LL G D + A + + AG+ G W L M+ RWA+K+G+
Sbjct: 104 REFKESLESMRINTLLSGEYDSDNAILRLNAGAGGTESCDWCGMLYRMFCRWAEKKGFSL 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T++ A+GYL E G H L+ N + + + DV+
Sbjct: 164 EVLDYLDGEEAGIKSVTVQINGPNAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I++EDL + S G+ + A I H+PTGI VQ ER+ F
Sbjct: 224 P-DIEEDLDVEINEEDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQFQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ ++ +S I+ + W + R YV PY +V+D +T +
Sbjct: 283 NKDKAMQMLKAKLYMLKQQENAEKLSGIRGDVTEIGWGNQIRSYVLQPYTMVKDHRTNAE 342
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ SVLDG++ F+ A++
Sbjct: 343 TGNVGSVLDGSLDQFMYAYL 362
>gi|257054828|ref|YP_003132660.1| peptide chain release factor 2 [Saccharomonospora viridis DSM
43017]
gi|256584700|gb|ACU95833.1| bacterial peptide chain release factor 2 (bRF-2) [Saccharomonospora
viridis DSM 43017]
Length = 368
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 168/324 (51%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDPEVAQRVTSQLSHKQASLRKVSELRQRVDDLGVLHELAEAEG-DKASLAEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K ++ E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AQLTKDVNALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G++SAT + Y +G LS E G H L+ + + + A V+V+
Sbjct: 162 EIYDISYAEEAGIRSATFKISGPYLYGTLSVEQGTHRLVRISPFDNQNRRQTSFAHVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E ++I ++D+ ++ S G+ + A I H+PTGI V E++
Sbjct: 222 P-EVEEIDHVEIPEKDIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL E+ + + ++ + W + R YV HPY+LV+D++T +
Sbjct: 281 NKASAMKVLQAKLLQRKKEEERAELDALRDSG--SSWGNQMRSYVLHPYQLVKDLRTDYE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ + ++VLDG + F+EA I R+
Sbjct: 339 VGNPSAVLDGELDGFLEAGIRWRK 362
>gi|163789840|ref|ZP_02184276.1| peptide chain release factor 2, programmed frameshift
[Carnobacterium sp. AT7]
gi|159874780|gb|EDP68848.1| peptide chain release factor 2, programmed frameshift
[Carnobacterium sp. AT7]
Length = 353
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 138/260 (53%), Gaps = 8/260 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LDQYE+ LL P D A + + G+ G + W LL MY RWA+K G++ ++
Sbjct: 92 LDQYELDLLLSDPYDKNNAIIELHPGAGGTESQDWGSLLLRMYTRWAEKRGFKIETLNYQ 151
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLE 188
G+KS T+ + A+GYL E G H L+ F + H + +DVVP L+
Sbjct: 152 SGDEAGIKSVTLLIKGMNAYGYLKAEKGVHRLVRISPFDSAGRRH-TSFVSIDVVPE-LD 209
Query: 189 TSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKA 245
S D++I+ +DL + + G+ + A I HIP+G+ V S +R+ N+ +A
Sbjct: 210 DSVDIKINSDDLKIDTYRATGAGGQHINTTDSAVRITHIPSGVVVASQAQRSQLKNRDQA 269
Query: 246 LNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFN 305
++ LKAKL + E+ ++ I+ E + W + R YV HPY +V+D +T + +
Sbjct: 270 MSMLKAKLYQLEVEEQEKEMAAIRGEQLEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIA 329
Query: 306 SVLDGNIKPFIEAHINSRRS 325
V+DG I PFI+A++ S+ S
Sbjct: 330 QVMDGGIDPFIQAYLRSKVS 349
>gi|420206815|ref|ZP_14712320.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM008]
gi|394276918|gb|EJE21251.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM008]
Length = 333
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 161/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA+++ S
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYLSKEMDS 330
>gi|302847640|ref|XP_002955354.1| hypothetical protein VOLCADRAFT_106758 [Volvox carteri f.
nagariensis]
gi|300259426|gb|EFJ43654.1| hypothetical protein VOLCADRAFT_106758 [Volvox carteri f.
nagariensis]
Length = 242
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 131/221 (59%), Gaps = 6/221 (2%)
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI- 164
WAE L MY+RWA+++G+ R+VD+ + GVKS +E Y +GYL E G H L+
Sbjct: 3 WAEMLERMYLRWAEQQGHGVRLVDRAPGEEAGVKSVELEVAGRYVYGYLRAEKGTHRLVR 62
Query: 165 NFP-NGSFPHEATLACVDVVPLFLETS-PDLQISDEDLLFS---SPSLPGERQSIAKPAA 219
N P N + + A VDV+P+ PDL +++ DL FS S G+ + +
Sbjct: 63 NSPFNAKGLRQTSFAGVDVMPVLGPGDLPDLDLNERDLEFSTMRSGGKGGQNVNKVETGV 122
Query: 220 CIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQR 279
I H+PTGI+V+ ER+ N+ A++ LK++LLV++ EQ V+ I+ + + W +
Sbjct: 123 RIVHLPTGISVKCTQERSQSQNREIAMDILKSRLLVVLEEQNARRVAEIRGDLVKAEWGQ 182
Query: 280 ETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+ R YV HPYKLV+D +TG++ D +VLDG++ F+ A++
Sbjct: 183 QIRNYVFHPYKLVKDTRTGVETSDVAAVLDGDLADFMAAYL 223
>gi|377562090|ref|ZP_09791505.1| peptide chain release factor 2 [Gordonia otitidis NBRC 100426]
gi|377520760|dbj|GAB36670.1| peptide chain release factor 2 [Gordonia otitidis NBRC 100426]
Length = 371
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 170/327 (51%), Gaps = 13/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA---- 61
+LW+D + +V +L+ + + + +LR + ++ + +LAE E + A
Sbjct: 43 DLWNDQEHAQKVTSELSHAQSELRRVTELRQRLDDMPVHYELAESEEGEARTSALADADD 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RASL + E+ +L G D A V I++G+ G+ WA+ L+ MYVRWA+K
Sbjct: 103 ERASLRAD--IQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYVRWAEKH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKSPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E+
Sbjct: 221 VEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 279
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++
Sbjct: 280 SQLQNKASAMRVLQAKLLARKQQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T ++ + +VLDG+I FIEA I R
Sbjct: 339 TNVENNNPATVLDGDIDEFIEAGIRWR 365
>gi|379335403|gb|AFD03384.1| protein chain release factor B [uncultured bacterium W5-51b]
Length = 330
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 159/328 (48%), Gaps = 21/328 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME---AIDYGLFKRAY 62
WDD + + ++ K V L + EA +A L + I+ GL
Sbjct: 5 GFWDDADSARATVEEIRQIKKWVEPFTRLEQRTVEALELADLVSEDPDPEIESGL----- 59
Query: 63 RASLDVSKLL---DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ +V LL E+ +LRG +D A +TI G+ G + WAE L+ MY RWA+
Sbjct: 60 --ADEVPSLLAGVQHLELMNMLRGSDDHRSAILTIHPGAGGTESQDWAEMLMRMYTRWAE 117
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
+ GY V+D + G+KS +E EYA+GYL E G H L+ F S H +
Sbjct: 118 RRGYVISVMDLLAGEEAGLKSVALEIGGEYAYGYLKAEKGVHRLVRISPFDAQSRRH-TS 176
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V V PL ++ S ++ + DED+ +F + G+ + A ++H P+GIAV
Sbjct: 177 FASVFVYPL-VDDSIEIDVRDEDIEMEVFRASGAGGQHVNKTSSAVRLRHTPSGIAVSCQ 235
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ F N+ A+ LKA L E+ + ++ N W + R YV PY +V
Sbjct: 236 QERSQFKNRATAMKMLKAALYQKAVEEREQKRAELEATKTDNSWGNQIRSYVFQPYTMVN 295
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHIN 321
D +T +++ D SV+DG I F+EA++
Sbjct: 296 DHRTELKVSDVRSVMDGEIDEFMEAYLK 323
>gi|403047238|ref|ZP_10902706.1| peptide chain release factor 2 [Staphylococcus sp. OJ82]
gi|402762772|gb|EJX16866.1| peptide chain release factor 2 [Staphylococcus sp. OJ82]
Length = 332
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 160/322 (49%), Gaps = 6/322 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ E++ K +VNA + L + E+ + +L + + + L
Sbjct: 6 FWDDQDKAQEIIDKNNALKTIVNAYRGLESEIEDMETTRELLLDDDD-DDMKSDLEQNVL 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D LD++E+ LL GP D A + + G+ G + W LL MY R+ +++G++
Sbjct: 65 DFKANLDKFELQLLLDGPYDANDAIMELHPGAGGTESQDWTNMLLRMYQRYCEQKGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D GVKS T+ + A+GYL E G H L+ + S + A DV+P
Sbjct: 125 IADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
F T ++ I+ +D+ F + G+ + + A I H PTGI V + ER+ N
Sbjct: 185 QFNNTEIEIDINPDDINVDTFRASGAGGQHINKTESAIRITHQPTGIVVNNQNERSQIKN 244
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LKAKL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 245 REAAMKTLKAKLYQLKIEEQEQEMAEIRGEQKEIGWGSQIRSYVFHPYAMVKDHRTNEES 304
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
++V+DG+I PFIEA++ S+
Sbjct: 305 GKVDAVMDGDISPFIEAYLRSQ 326
>gi|299144433|ref|ZP_07037513.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518918|gb|EFI42657.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 348
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 157/319 (49%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ + +V+ + ++ L EA+ + L EME DY +
Sbjct: 26 FWDNAENAQKVIREQNHYQSKIDKYDKLIKSINEAEDLIDLMEMED-DYSFYGDLKLDLE 84
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ KL + +++ LL G D ++I AG+ G + WA L MYVR+A+K G+R
Sbjct: 85 NIEKLSNDFKLETLLNGEYDSNNCIISIHAGAGGTEAQDWASMLNRMYVRYAEKRGFRVE 144
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KS T+ + A+GYL GE G H L+ + + + A +DV P
Sbjct: 145 TLDMLKEEEAGIKSVTLLITGDNAYGYLKGEKGVHRLVRISPFDANKRRHTSFASLDVYP 204
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L+ +++I EDL + S G+ + A I HIPTGI VQ ER+ N
Sbjct: 205 Q-LDDDNEVEIKAEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQNERSQIQN 263
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ KA+N LKAKL+ + E+ + ++ W + R YV PY LV+D +T ++
Sbjct: 264 RDKAMNMLKAKLIALAEEEKKEKIEDLQGNYSQIAWGSQIRSYVFQPYTLVKDHRTNTEI 323
Query: 302 PDFNSVLDGNIKPFIEAHI 320
D N V+DG + FI +++
Sbjct: 324 GDVNKVMDGYLDEFINSYL 342
>gi|81428109|ref|YP_395108.1| peptide chain release factor 2 [Lactobacillus sakei subsp. sakei
23K]
gi|78609750|emb|CAI54796.1| Peptide chain release factor 2 [Lactobacillus sakei subsp. sakei
23K]
Length = 332
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 163/322 (50%), Gaps = 11/322 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D +S + L+ + LK ++ L+ + EE + +L + E D + ++ A
Sbjct: 5 DFWND-QQSAQQLIDQNNVLKEKYDSFNQLQAQFEELSVTLELLQEEPDDE--LQASFEA 61
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L+ + + QYE+ +LL G D A V + G+ G + W LL MY+RWAD G+
Sbjct: 62 DLEQIQSQMRQYELGQLLSGEYDSNNAIVELHPGAGGTESQDWGAMLLRMYLRWADAHGF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VD 181
D + G+KS T+ + A+G L E G H L+ P S T C VD
Sbjct: 122 TVETEDYQAGEEAGIKSVTLMIKGHNAYGLLRSEKGVHRLVRISPFDSAGRRHTSFCSVD 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ S D+++ EDL +F S G+ + A + H+PTGI V S +R+
Sbjct: 182 VMPE-LDGSIDIEVRTEDLRVDVFRSSGAGGQHINKTSSAVRLTHLPTGIVVSSQAQRSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+N LKAKL E+ + IK E + W + R YV HPY +V+D +T
Sbjct: 241 LQNRETAMNMLKAKLYQKEQEEQAKKAAAIKGEQLEIGWGSQIRSYVFHPYTMVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
+ + +V+DG++ PF+ A++
Sbjct: 301 YETGNGQAVMDGDLDPFMYAYL 322
>gi|188997267|ref|YP_001931518.1| peptide chain release factor 2 [Sulfurihydrogenibium sp. YO3AOP1]
gi|229576671|sp|B2V5M0.1|RF2_SULSY RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|188932334|gb|ACD66964.1| peptide chain release factor 2 [Sulfurihydrogenibium sp. YO3AOP1]
Length = 369
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 165/330 (50%), Gaps = 27/330 (8%)
Query: 6 NLWDDPTKSNEVLVK---LADSL-------KVVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
N W+D K+ E+ + L + L K VN L D L EME D
Sbjct: 44 NFWNDTKKAQEISSRRNYLGEKLEEILTVDKKVNNLLDY----------ITLLEMEE-DQ 92
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
L+ + ++ K + + E+ LL D + A +T++AGS G+ W E LL MY
Sbjct: 93 ELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNAILTVQAGSGGVEACDWTEMLLRMYT 152
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA+K GY+ +VD GVKSAT+ + YA+GYL GE G H L+ + +
Sbjct: 153 RWAEKRGYQVELVDFQPDDVAGVKSATLIIKGPYAYGYLKGEQGVHRLVRISPFDANKRR 212
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + V V+P ++ ++I++EDL + + G+ + A I HIPTGI V
Sbjct: 213 HTSFSAVSVIP-EIDEDIKVEINEEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVV 271
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ NK+KA N LKAKL + E+ ++ E W + R YV PY+
Sbjct: 272 ACQSERSQLQNKLKATNMLKAKLYQLELEKRKEKQKELEGEKKDITWGSQIRSYVFQPYQ 331
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+V+D++TG + + +V+DG I FIE+++
Sbjct: 332 MVKDLRTGFETGNIEAVMDGEIDDFIESYL 361
>gi|417931673|ref|ZP_12575038.1| peptide chain release factor 2 [Propionibacterium acnes
SK182B-JCVI]
gi|340775616|gb|EGR97669.1| peptide chain release factor 2 [Propionibacterium acnes
SK182B-JCVI]
Length = 368
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYKI 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 223 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 282 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 340 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 368
>gi|453383221|dbj|GAC82508.1| peptide chain release factor 2 [Gordonia paraffinivorans NBRC
108238]
Length = 373
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 171/329 (51%), Gaps = 11/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + E+ + +LAE E + A +
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVTELRQRLEDLPVHYELAEAEEGEDRAAALADADA 104
Query: 66 LDVSKLLD--QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
S D E+ +L G D A V I+AG+ G+ WA+ L+ MY+RWA+K Y
Sbjct: 105 ERASLRADIEAMEVKTMLAGEYDSREAVVNIRAGAGGVDAADWAQMLMRMYIRWAEKHDY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT + Y +G LS E G H L+ F N S + + A V
Sbjct: 165 GVEVYDTSYAEEAGLKSATFAIKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAEV 223
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +E + + I + DL ++ S G+ + A + HIPTGI V E++
Sbjct: 224 EVLPV-VEQTDHIDIDENDLKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 282
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 283 QLQNKASAMRVLQAKLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 341
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
G++ + +VLDG+I FIEA I R +S
Sbjct: 342 GVEDNNPAAVLDGDIDKFIEAGIRWRMAS 370
>gi|343924877|ref|ZP_08764414.1| peptide chain release factor 2 [Gordonia alkanivorans NBRC 16433]
gi|343765223|dbj|GAA11340.1| peptide chain release factor 2 [Gordonia alkanivorans NBRC 16433]
Length = 373
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 175/331 (52%), Gaps = 15/331 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
+LW+D + +V +L+ + + + +LR + ++ + +LAE E + A
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLDDLPVHYELAESEEGEDRAAALADADQ 104
Query: 63 -RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RA L ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 105 ERAGLRAD--IEAMEVKTMLAGEYDSREAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 162
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 163 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 221
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 222 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 280
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 281 KSQLQNKASAMRVLQAKLLERKRQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 339
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+TG++ + +VLDG + FIEA I R +S
Sbjct: 340 RTGVEDNNPTAVLDGELDKFIEAGIRWRMAS 370
>gi|422539085|ref|ZP_16614958.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA1]
gi|422579243|ref|ZP_16654766.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA4]
gi|313764090|gb|EFS35454.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA1]
gi|314914951|gb|EFS78782.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA4]
Length = 370
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 174/329 (52%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 225 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 284 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 341
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 342 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 370
>gi|386772748|ref|ZP_10095126.1| peptide chain release factor 2 [Brachybacterium paraconglomeratum
LC44]
Length = 371
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 168/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V L+ + + +L + E+ +++ +LA E D A
Sbjct: 44 DLWDDVENAQKVSSALSHAQSERRRISELASRIEDLEVMVELA-AEEDDPDTLAEAEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K LD+ E+ LL G D A +TI+AG+ G+ +AE L+ MY+RWA+ GY
Sbjct: 103 VSIHKTLDELEVRTLLSGEYDERDAVITIRAGAGGVDAADFAEMLMRMYLRWAENNGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVAGPFAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E++ ++I + DL +F S G+ + A + H+PTG V E++
Sbjct: 223 PL-IESTDHIEIPENDLKIDVFRSSGPGGQSVNTTDSAVRMTHLPTGTVVSMQDEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL ++++LL++ + + + + + W + R YV +PY++V+D++T Q
Sbjct: 282 NRAAALRVMQSRLLLLKKAEEAAERKELAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEYQ 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ +SV DG I FI+A I R
Sbjct: 341 EGNPSSVFDGEISGFIDAGIRWR 363
>gi|422427717|ref|ZP_16504628.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA1]
gi|422433544|ref|ZP_16510412.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA2]
gi|422436114|ref|ZP_16512971.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA2]
gi|422444424|ref|ZP_16521218.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA1]
gi|422445123|ref|ZP_16521877.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA1]
gi|422450881|ref|ZP_16527594.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA2]
gi|422453755|ref|ZP_16530442.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA3]
gi|422501687|ref|ZP_16577941.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA2]
gi|422510282|ref|ZP_16586428.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA1]
gi|422543255|ref|ZP_16619105.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA1]
gi|422548178|ref|ZP_16623994.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA3]
gi|422550066|ref|ZP_16625866.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA1]
gi|422562692|ref|ZP_16638369.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA1]
gi|422571720|ref|ZP_16647301.1| peptide chain release factor 2 [Propionibacterium acnes HL067PA1]
gi|313816439|gb|EFS54153.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA1]
gi|313827262|gb|EFS64976.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA2]
gi|314917824|gb|EFS81655.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA1]
gi|314919714|gb|EFS83545.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA3]
gi|314930043|gb|EFS93874.1| peptide chain release factor 2 [Propionibacterium acnes HL067PA1]
gi|314956378|gb|EFT00690.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA1]
gi|314957250|gb|EFT01353.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA1]
gi|314967699|gb|EFT11798.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA1]
gi|315098170|gb|EFT70146.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA2]
gi|315101677|gb|EFT73653.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA1]
gi|315109496|gb|EFT81472.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA2]
gi|327452380|gb|EGE99034.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA3]
gi|327452743|gb|EGE99397.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA2]
gi|328753837|gb|EGF67453.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA1]
Length = 370
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 174/329 (52%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 225 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 284 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 341
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 342 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 370
>gi|269218746|ref|ZP_06162600.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269211857|gb|EEZ78197.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 378
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 169/331 (51%), Gaps = 18/331 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-----IDYGLFKR 60
+LWDD K+ V KL+ + ++ + + ++ + + ++A+ EA L+
Sbjct: 43 DLWDDQDKAQSVTSKLSHAQAELDKINAMSAALDDLETLKEMADEEAGSDPETAAELYSD 102
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
R V + + E+ LL G D A VTI++G+ G+ +A+ L MY+RWA++
Sbjct: 103 LERELGQVGADMSELEIRTLLSGKYDEREAVVTIRSGAGGVDAADFAQILQRMYLRWAER 162
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY +V+D + G+KS T E YA+G LS E G H L+ + + + A
Sbjct: 163 RGYSAKVLDTSYAEEAGIKSTTFEVSAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFA 222
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+PL +E + + + + D+ +F S G+ + A I HIPTGI V E
Sbjct: 223 AVEVIPL-IEQTDHIDVPEADIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVVSMQDE 281
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLV 292
++ N+ A+ L+++LL++ E+ K+E +I W + R YV PY++V
Sbjct: 282 KSQIQNRAAAMRVLQSRLLLLKQEEEARE----KKELAGDIKASWGDQMRSYVLQPYQMV 337
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+D++TG + + +V DG+I FI+A I R
Sbjct: 338 KDLRTGYEAGNPEAVFDGDIDGFIDAGIRWR 368
>gi|365963048|ref|YP_004944614.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965288|ref|YP_004946853.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974221|ref|YP_004955780.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn33]
gi|365739729|gb|AEW83931.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741969|gb|AEW81663.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744220|gb|AEW79417.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn33]
Length = 367
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 174/329 (52%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 102 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 162 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 222 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 281 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 339 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 367
>gi|441513034|ref|ZP_20994866.1| peptide chain release factor 2 [Gordonia amicalis NBRC 100051]
gi|441452015|dbj|GAC52827.1| peptide chain release factor 2 [Gordonia amicalis NBRC 100051]
Length = 371
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 175/331 (52%), Gaps = 15/331 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK----RA 61
+LW+D + +V +L+ + + + +LR + ++ + +LA+ E D A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLDDLPVHYELADAEEGDDKTAALADADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RASL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 103 ERASLRAD--IEAMEVKTMLAGEYDSREALVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 220 EVEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L+AKLL + + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKASAMRVLQAKLLERKRLEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+TG++ + +VLDG + FIEA I R +S
Sbjct: 338 RTGVEDNNPTAVLDGELDKFIEAGIRWRMAS 368
>gi|390563062|ref|ZP_10245205.1| Peptide chain release factor 2 (RF-2) [Nitrolancetus hollandicus
Lb]
gi|390172370|emb|CCF84525.1| Peptide chain release factor 2 (RF-2) [Nitrolancetus hollandicus
Lb]
Length = 344
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 161/326 (49%), Gaps = 15/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W+D + V+ +L+ V+ L +A + + +L E+ D L S
Sbjct: 19 NFWNDAQAAQRVMRRLSGLRGQVDRWDGLSRQAAD---LQELTELAGEDESLLAEI---S 72
Query: 66 LDVSKLLDQYEMSKLLR---GPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ +++LD +L GP D A + + AG+ G+ + WAE LL MY+RWA + G
Sbjct: 73 EETARILDSLSQLELELLLTGPYDDSDAILAVHAGTGGVDAQDWAEMLLRMYLRWAGRSG 132
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
++ +V+D + G+KSATIE A+GY E G H L+ + + A V
Sbjct: 133 FQTQVLDVTEGEEAGIKSATIEIRGANAYGYAKAEAGTHRLVRLSPFDAAHRRHTAFALV 192
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P +E D++I D+DL + S G+ + A I H+PTGI V ER+
Sbjct: 193 EVLPQ-VEEGADVEIRDDDLRVDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVTCQNERS 251
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+A+L + + S +K + + + W R YV PY +V D +T
Sbjct: 252 QTQNRETAMKILRARLTELAIREREEEQSKLKGDHVASGWGNRIRSYVLQPYTMVTDHRT 311
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
+ SVL+G I+PFIEA+++ +
Sbjct: 312 EFSTGNVQSVLEGEIEPFIEAYLHQQ 337
>gi|225175296|ref|ZP_03729291.1| peptide chain release factor 2 [Dethiobacter alkaliphilus AHT 1]
gi|225169048|gb|EEG77847.1| peptide chain release factor 2 [Dethiobacter alkaliphilus AHT 1]
Length = 288
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 148/280 (52%), Gaps = 8/280 (2%)
Query: 47 LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIW 106
LAE E D L+ A + + +++ +D+ E++ L RG D A + I G+ G + W
Sbjct: 3 LAEDEG-DKELWVDAEQVAAELAAEMDKLELAVLFRGRYDANNAIIAIHPGAGGTESQDW 61
Query: 107 AEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN- 165
A LL MY RWA++ Y+ V+D G+KSAT+ + A+G+L E G H L+
Sbjct: 62 ANMLLRMYTRWAERRNYQVEVLDLLPGDEAGIKSATLLIKGRNAYGFLKAERGVHRLVRI 121
Query: 166 --FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAAC 220
F S H + A +DV+P E ++IS +DL + + G+ + A
Sbjct: 122 SPFDAASRRH-TSFASLDVLPEVEEGDSGIEISPDDLKIDTYRASGAGGQHVNTTDSAVR 180
Query: 221 IQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRE 280
I HIPTG VQ ER+ +N+ +A+ LKA+L + Q +S ++ E W +
Sbjct: 181 ITHIPTGTVVQCQNERSQHSNRDRAMKILKARLADLYQRQQAEELSNLRGEQKEIAWGSQ 240
Query: 281 TRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
R YV PY +V+D +TG+++ + N+V+DG++ IE+++
Sbjct: 241 IRSYVFQPYTMVKDHRTGVEVGNINAVMDGDLDELIESYL 280
>gi|379012633|ref|YP_005270445.1| peptide chain release factor 2 [Acetobacterium woodii DSM 1030]
gi|375303422|gb|AFA49556.1| peptide chain release factor 2 [Acetobacterium woodii DSM 1030]
Length = 337
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 168/321 (52%), Gaps = 10/321 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + VL +L + V+ +L ++ ++ +LAE I G F A + L
Sbjct: 20 FWNDQKSAQIVLKELKITKIKVDHYNELAEALDDIMVMLELAEEGEIVEG-FSAAIK-EL 77
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
DV+ LD + + LL G D A +++ G+ G + WAE LL MY RWA+K+ Y+ +
Sbjct: 78 DVN--LDNFRIETLLSGEYDSNNAIISLHPGAGGTESQDWAEMLLRMYTRWAEKKKYKVK 135
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T+ E A+GYL E G H L+ + S + A +DV+P
Sbjct: 136 TLDLQPGDVAGIKSVTLLIEGINAYGYLKTERGVHRLVRISPFDSSGRRHTSFASLDVMP 195
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ S +++I ED+ F S G+ + A I H+ TGI VQ ER+ N
Sbjct: 196 -EVDESVEIEILPEDIRIDTFRSSGAGGQHVNTTDSAIRITHLKTGIVVQCQNERSQHQN 254
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ LK KL+ I+ ++ + ++ IK + W + R YV HPY +V+D +T +++
Sbjct: 255 KEVAMGMLKGKLVEIMEQEKMDHIEDIKGDYSQIAWGSQIRSYVFHPYTMVKDHRTNVEV 314
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ SV+DG++ F+ A++N+
Sbjct: 315 GNVASVMDGDLDGFMNAYLNT 335
>gi|331270416|ref|YP_004396908.1| peptide chain release factor 2 [Clostridium botulinum BKT015925]
gi|329126966|gb|AEB76911.1| peptide chain release factor 2 [Clostridium botulinum BKT015925]
Length = 327
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 167/325 (51%), Gaps = 7/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD K+ EV + ++ + + + E+ K++ +++ +E D +
Sbjct: 5 NFWDDINKAQEVTQEAKGLKDRIDKYSNTKNRLEDLKILIEMS-IEEDDESSVEEILNEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++D++ + LL G D A V++ AG+ G + W E LL MY RW++ +GY+
Sbjct: 64 KEIQIIIDEFRVQILLSGEYDKNNAIVSLHAGAGGTDAQDWTEMLLRMYTRWSETKGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSA+++ E+A+GYL E G H L+ N + + + A ++++
Sbjct: 124 ETLDILPGDEAGIKSASLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEIL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E S D++I +DL + + G+ + A I HIPTGI VQS ER+ F
Sbjct: 184 PELTE-SQDIEIKSDDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQSERSQFQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A++ LK+KL+ + + + + W + R YV PY +V+D +T +
Sbjct: 243 NKDTAMSMLKSKLVELKERAHKEKIEDLSGDLKEIGWGSQIRSYVFQPYTMVKDHRTNTE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG+I FI ++ + ++
Sbjct: 303 MGNVEAVMDGDIDIFIIEYLKANKN 327
>gi|154483104|ref|ZP_02025552.1| hypothetical protein EUBVEN_00805 [Eubacterium ventriosum ATCC
27560]
gi|149735912|gb|EDM51798.1| peptide chain release factor 2 [Eubacterium ventriosum ATCC 27560]
Length = 286
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 135/262 (51%), Gaps = 9/262 (3%)
Query: 67 DVSKLLDQYEMSK---LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + +D++E +K LL G D A V I AG+ G WA L MY RWA+ +GY
Sbjct: 17 ETKEFIDEFEKTKIETLLSGEYDKNNAIVKINAGAGGTESCDWASMLYRMYTRWAESKGY 76
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ V+D G+KS T + E A+GYL E G H L+ N + + + A D
Sbjct: 77 KTEVLDFLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFASCD 136
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P +E D++I+D+D+ + S G+ + A I H PTGI VQ ER+
Sbjct: 137 VMP-DIEEDLDVEINDDDIRIDTYRSSGAGGQHINKTSSAVRITHNPTGIVVQCQNERSQ 195
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK KA+ LKAKL V+ ++ S I+ E W + R YV PY +V+D +T
Sbjct: 196 LQNKDKAMKMLKAKLYVLKKQEEEEKRSGIRGEIKEIGWGSQIRSYVMQPYTMVKDHRTN 255
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ D V+DG I PFI A++
Sbjct: 256 QEITDVGKVMDGYIDPFINAYL 277
>gi|418623705|ref|ZP_13186407.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU125]
gi|374830015|gb|EHR93806.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU125]
Length = 333
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA++ S
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYLRKEMDS 330
>gi|347542944|ref|YP_004857581.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985980|dbj|BAK81655.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 327
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 17/330 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLK-----VVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
M+ + WDD S ++ VKLA SLK V KD Y E ++I ++ E I
Sbjct: 1 MMEDSKFWDDIENSTKI-VKLAKSLKDKIDEVDKLYKDYEYLVESLEIIKDESDEEYIQ- 58
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+FK + +V +D + LL G D +TI AG+ G+ + W++ L MY+
Sbjct: 59 -MFKDDFYKFKNV---IDTLNIKTLLNGEYDKNNVFLTIHAGAGGVDAQDWSDMLFRMYM 114
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RW ++ + V+D G+KSATI+ E EYA+GYL GE G H L+ N +
Sbjct: 115 RWGEENKFALSVIDYSIGDEAGIKSATIKIEGEYAYGYLKGEKGIHRLVRISPFNANGKR 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+++P ++ +++I++ +L + + G+ + + A I H+ TGI V
Sbjct: 175 QTSFASVEILPE-IQNLEEIKINESELKIDTYRASGAGGQHVNKTESAVRITHLKTGIVV 233
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
Q ER+ +NK A+ + +KL+ + + + + + + R YV HPY
Sbjct: 234 QCQNERSQLSNKETAMKIMISKLIELKDRSHKEKLDDLSGDLKEIGFGSQIRSYVMHPYT 293
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
LV+D + I+ D N VL+G+I FI+ +I
Sbjct: 294 LVKDHRMNIETSDINKVLNGDIDMFIKNYI 323
>gi|383764407|ref|YP_005443389.1| peptide chain release factor 2 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384675|dbj|BAM01492.1| peptide chain release factor 2 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 350
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 167/317 (52%), Gaps = 9/317 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + +++ +L+ V + L +A +A + Q+AE D L +
Sbjct: 28 FWDDPQSAQKIMQELSALRDKVEVWEGLARRAHDALELYQMAE---DDPALLTELEAEAE 84
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD+ E + L GP D A ++I AG+ G + WA+ LL MY+RWA+K G++
Sbjct: 85 ALEAELDEREFTLALSGPYDSGSAILSIHAGAGGTEAQDWAQMLLRMYLRWAEKHGFKTF 144
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D+ + G+KS T+E A+G L E G H L+ + + + A V+V+P
Sbjct: 145 ITDETEGEEAGIKSVTVEVNGPNAYGLLKAEKGVHRLVRLSPFDANNRRHTSFAKVEVMP 204
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ L+ ++QI +D+ +F S G+ + A I+H+PTGI V S ER+ N
Sbjct: 205 V-LDEDIEIQIDPKDIEVEVFLSSGAGGQNVQKNQTAVRIRHLPTGIVVTSQNERSQTQN 263
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ L+ KL + E+ + + +K + + + R YV HPY+LV+D++TG++
Sbjct: 264 REMAMRVLRGKLYELEQERLAAEKAKLKGKVEDANFGSQIRSYVLHPYQLVKDLRTGVET 323
Query: 302 PDFNSVLDGNIKPFIEA 318
+ +VLDG I PFIEA
Sbjct: 324 SNTTAVLDGEIDPFIEA 340
>gi|54026461|ref|YP_120703.1| peptide chain release factor 2 [Nocardia farcinica IFM 10152]
gi|76363350|sp|Q5YR52.1|RF2_NOCFA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|54017969|dbj|BAD59339.1| putative peptide chain release factor 2 [Nocardia farcinica IFM
10152]
Length = 372
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 175/333 (52%), Gaps = 25/333 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI----------AQLAEMEAIDY 55
+LW+D + V +L+ + + ++DLR + E+ ++ A+ A +E D
Sbjct: 43 DLWNDQDHAQRVTSELSHAQGELRRVEDLRRRLEDLPVLYELAEGEEGEARTAALEEAD- 101
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
A RA+L ++ E+ LL G D A V I++G+ G+ WAE L+ MY+
Sbjct: 102 -----AERAALHSD--VEAMEVRTLLSGEYDKREALVNIRSGAGGVDAADWAEMLMRMYI 154
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWAD+ GY V D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 155 RWADRHGYPVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLVRISPFDNQGRR 214
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+V+P+ +ET+ +++ + ++ ++ S G+ + A I HIPTGI V
Sbjct: 215 QTSFAEVEVLPV-VETTDHIEVPETEIRVDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 273
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
E++ NK+ A+ L+AKLL ++ + + +K + W + R YV HPY+
Sbjct: 274 TCQNEKSQLQNKISAMRVLQAKLLERKRQEERAEMDALKTNEGAS-WGNQMRSYVLHPYQ 332
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+V+D++T ++ + ++VL+G+I FIE+ I R
Sbjct: 333 MVKDLRTNYEVNNPSAVLNGDIDGFIESGIRWR 365
>gi|404484151|ref|ZP_11019365.1| peptide chain release factor 2 [Clostridiales bacterium OBRC5-5]
gi|404342831|gb|EJZ69201.1| peptide chain release factor 2 [Clostridiales bacterium OBRC5-5]
Length = 351
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 161/324 (49%), Gaps = 17/324 (5%)
Query: 7 LWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRA 61
WDDP +S +++ +L D+++ N LK E + I L EM E D L
Sbjct: 20 FWDDPKESTKIVREAKQLKDTVEKYNKLK------SEYEDIGVLIEMGYEENDDSLIPEI 73
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
+K +D+ +++ LL G D A + + AG+ G W L MY RWA KE
Sbjct: 74 EGMLEAFTKEIDELKIATLLTGEYDSSNAIMKLNAGAGGTESCDWCSMLYRMYTRWAAKE 133
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V+D G+KS T++ A+GYL E G H L+ N + + +
Sbjct: 134 GYTVEVLDMLEGDEAGIKSVTLQINGLNAYGYLRSEHGVHRLVRISPFNAAGKRQTSFVS 193
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
D++P +E D+ I+ +DL + S G+ + A I H+PTG+ VQ ER
Sbjct: 194 CDIMP-DIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGVVVQCQNER 252
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ F NK KA+ LKAKL ++ + V +S I+ + W + R YV PY +V+D +
Sbjct: 253 SQFQNKDKAMQMLKAKLFMLKQQANVEKLSDIRGDVKDIGWGNQIRSYVMQPYTMVKDHR 312
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI 320
TG + + ++V+DG+I FI A++
Sbjct: 313 TGAESGNVSAVMDGDIDKFIIAYL 336
>gi|399887171|ref|ZP_10773048.1| peptide chain release factor 2 [Clostridium arbusti SL206]
Length = 326
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 163/322 (50%), Gaps = 13/322 (4%)
Query: 7 LWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD K+ E+ K L D +++ NAL++ + E+AK++ Q+ + E D +
Sbjct: 6 FWDDMKKAQEITQKSKGLKDRVELFNALEE---RLEDAKILIQMCQEEE-DENILDEIVS 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ +D + + LL G D A + + G+ G + W E LL MY RW++ + +
Sbjct: 62 EINNLKVSIDTFRVEILLAGQYDRNNAILDLHTGAGGTDAQDWTEMLLRMYTRWSESKKF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D G+KS T++ E+A+GYL E G H L+ N + + + A V+
Sbjct: 122 KVETLDLLPGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVE 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P E + D+ I +DL + + G+ + + A I HIPTGI VQ ER+
Sbjct: 182 VLPELTE-NQDIDIKSDDLRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+NK A+ LKAKL+ + + + E N + + R YV PY +V+D +TG
Sbjct: 241 HSNKESAMVMLKAKLVELKERAHKERIEDLTGELKDNGFGSQIRSYVFQPYTMVKDHRTG 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ +SV+DG+I FI ++
Sbjct: 301 VETGSIDSVMDGDIDNFITEYL 322
>gi|126652452|ref|ZP_01724624.1| peptide chain release factor 2 [Bacillus sp. B14905]
gi|126590723|gb|EAZ84838.1| peptide chain release factor 2 [Bacillus sp. B14905]
Length = 328
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 163/330 (49%), Gaps = 11/330 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
M+ WDD + +V++ + LK +VN K+L E + +L E + +
Sbjct: 1 MMLEPGFWDD-QQGAQVIINEGNGLKAIVNEYKELEEIHENLDMTLELLREEPDEELQEE 59
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ ++ + + +E+ LL GP D A + + G+ G + W LL MY RWA+
Sbjct: 60 LG-KELVEFQQKMADFELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTRWAE 118
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
K G++ +D G+KS TI + AFGYL E G H L+ F + H +
Sbjct: 119 KRGFKVETMDYLPGDEAGIKSVTISIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRHTSF 178
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
++C DV+P F E + ++ I EDL + + G+ + A I HIPTG VQ
Sbjct: 179 VSC-DVMPEFDE-NIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTVVQCQ 236
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ N+ KA+ LK KL + E+ + + I+ E W + R YV HPY +V+
Sbjct: 237 AERSQIKNREKAMAMLKGKLYQLELEKQQAQLDEIRGEQKDIGWGSQIRSYVFHPYSMVK 296
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
D +T + + +V+DG++ PFI A++ SR
Sbjct: 297 DHRTNEETGNVGAVMDGDVDPFINAYLRSR 326
>gi|378550046|ref|ZP_09825262.1| hypothetical protein CCH26_08159 [Citricoccus sp. CH26A]
Length = 371
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 171/326 (52%), Gaps = 14/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V KL+ + +K L + E+ +++ +LA E D A
Sbjct: 44 DLWDDPEAAQKVTSKLSHRQSELERIKRLASRIEDMEIMVELAAEEDDDAARADTARELE 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K +D E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 104 -SIRKAMDDLEIVTLLSGEYDERDAVVTIRAGAGGVDAADFAEILMRMYLRWAEQRGWST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSYAEEAGLKSATFEVNAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E+ ++I + +L ++ S G+ + A + H+PTGI V E++
Sbjct: 223 PL-IESDDSIEIPESELKIDVYRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL ++++LL++ + K+E ++ W + R YV +PY++V+D++T
Sbjct: 282 NRAAALRVMQSRLLLVRK----AEEDAKKKEMAGDVKASWGDQMRSYVLNPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
+ + SV DG+I FI+A I R
Sbjct: 338 NHEEGNPASVFDGHIDGFIDAGIRWR 363
>gi|225375950|ref|ZP_03753171.1| hypothetical protein ROSEINA2194_01587 [Roseburia inulinivorans DSM
16841]
gi|225212203|gb|EEG94557.1| hypothetical protein ROSEINA2194_01587 [Roseburia inulinivorans DSM
16841]
Length = 338
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 155/333 (46%), Gaps = 33/333 (9%)
Query: 6 NLWDDPTKSNEVLV-------------KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA 52
+ W+DP S + KLA + L ++ Y+ +A LI ++ EM
Sbjct: 5 DFWNDPVVSQNKMKTLKSMKDDVATYEKLATQFDDIETLIEMGYEENDASLIPEIEEMLN 64
Query: 53 IDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
+ D + LL G D + A +++ AG+ G WA+ L
Sbjct: 65 --------------EFVTTFDNIRIKTLLSGEYDGDNAILSLHAGAGGTESCDWAQMLFR 110
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY +WAD GY V+D G+KS T + E A+GYL E G H L+ N +
Sbjct: 111 MYSKWADSRGYELVVLDSLDGDEAGIKSITFQINGENAYGYLKSEKGVHRLVRISPFNAA 170
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+ + DV+P +E D++I+++DL + S G+ + A I H+PTG
Sbjct: 171 GKRQTSFVSCDVMP-DIEEDLDIEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTG 229
Query: 228 IAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSH 287
I VQ ER+ NK KA+ LKAKL ++ ++ + I+ E W + R YV
Sbjct: 230 IVVQCQNERSQHQNKDKAMQMLKAKLYLLKEQENAEKAAGIRGEVTEIGWGNQIRSYVMQ 289
Query: 288 PYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
PY +V+D +TG++ + +SV+DG I FI ++
Sbjct: 290 PYTMVKDHRTGVETGNVDSVMDGKIDLFINGYL 322
>gi|418622556|ref|ZP_13185301.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU123]
gi|374826312|gb|EHR90211.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU123]
Length = 333
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 160/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+L+DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEEEVQQFEELIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +++D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMIKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA++ S
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYLRKEMDS 330
>gi|331003438|ref|ZP_08326937.1| peptide chain release factor 2 [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330412484|gb|EGG91873.1| peptide chain release factor 2 [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 337
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 161/326 (49%), Gaps = 17/326 (5%)
Query: 6 NLWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKR 60
WDDP +S +++ +L D+++ N LK E + I L EM E D L
Sbjct: 5 TFWDDPKESTKIVREAKQLKDTVEKYNKLK------SEYEDIGVLIEMGYEENDESLIPE 58
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +K +D +++ LL G D A + + AG+ G W L MY RWA K
Sbjct: 59 IEAMLEEFTKEIDALKIATLLTGEYDDASAIMKLNAGAGGTESCDWCSMLYRMYTRWAAK 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
EGY V+D G+KS T++ A+GYL E G H L+ N + + +
Sbjct: 119 EGYTVDVLDILDGDEAGIKSVTLQINGLNAYGYLRSEHGVHRLVRISPFNAAGKRQTSFV 178
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
D++P +E D+ I+ +DL + S G+ + A I HIPTG+ VQ E
Sbjct: 179 SCDIMP-DIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGVVVQCQNE 237
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ F NK KA+ LKAKL ++ + V +S I+ + W + R YV PY +V+D
Sbjct: 238 RSQFQNKDKAMQMLKAKLFMLKQQANVEKLSDIRGDVKDIGWGNQIRSYVMQPYTMVKDH 297
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHIN 321
+TG + + ++V+DG+I FI A++
Sbjct: 298 RTGAESGNVSAVMDGDIDKFIIAYLT 323
>gi|41409273|ref|NP_962109.1| peptide chain release factor 2 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398093|gb|AAS05723.1| PrfB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 373
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 173/335 (51%), Gaps = 22/335 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK------ 59
LWDD ++ V +L+ + + +++LR + ++ ++ +LA +
Sbjct: 46 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEDGEGAAEALAEADAE 105
Query: 60 -RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 106 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 159
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 160 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQT 218
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTC 277
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK+ A+ L+AKLL + + + +K E + W + R YV HPY++V
Sbjct: 278 QNEKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLHPYQMV 336
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D++T ++ + +VLDG+I F+EA I R D
Sbjct: 337 KDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 371
>gi|417749179|ref|ZP_12397585.1| peptide chain release factor 2 [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459371|gb|EGO38314.1| peptide chain release factor 2 [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 370
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 173/335 (51%), Gaps = 22/335 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK------ 59
LWDD ++ V +L+ + + +++LR + ++ ++ +LA +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEDGEGAAEALAEADAE 102
Query: 60 -RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTC 274
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK+ A+ L+AKLL + + + +K E + W + R YV HPY++V
Sbjct: 275 QNEKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLHPYQMV 333
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D++T ++ + +VLDG+I F+EA I R D
Sbjct: 334 KDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 368
>gi|423316320|ref|ZP_17294225.1| peptide chain release factor 2 [Bergeyella zoohelcum ATCC 43767]
gi|405583881|gb|EKB57811.1| peptide chain release factor 2 [Bergeyella zoohelcum ATCC 43767]
Length = 370
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 11/321 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP K+ VL +L K V + + E+ +++A A+ + +
Sbjct: 41 DFWDDPKKAESVLKQLRSKKKWVEDYQTIHSLFEDLQVLADFAKEDPDSETELDNEFPKL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L L+ E +L D A + I AG+ G WA L+ MY WADK GY+
Sbjct: 101 L---HLISDLEFKNMLSNEGDELSAVLQITAGAGGTESCDWASMLMRMYTMWADKNGYKI 157
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
R ++ GVK+ T+E + EYAFGYL GE G H L+ F + + H + V V
Sbjct: 158 RELNFQEGDVAGVKTVTLEIDGEYAFGYLKGENGVHRLVRISPFDSNAKRH-TSFVSVYV 216
Query: 183 VPLFLETSPDLQISDEDLLFSS---PSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
PL ++ + ++ I+ D+ F + G+ + + A ++H PTGI +++ R+
Sbjct: 217 YPL-VDDTIEININPADISFETMRASGAGGQNVNKVETAVRLRHAPTGIIIENSESRSQL 275
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK KAL LK++L I E+ + + I+ + W + R YV HPYKLV+DV++G
Sbjct: 276 QNKEKALQLLKSRLYEIELEERMKARNEIEANKMKIEWGSQIRNYVMHPYKLVKDVRSGH 335
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ D + V++G++ PF++A +
Sbjct: 336 ETSDVDGVMNGDLTPFLKAFL 356
>gi|345872419|ref|ZP_08824354.1| peptide chain release factor 2 [Thiorhodococcus drewsii AZ1]
gi|343918967|gb|EGV29724.1| peptide chain release factor 2 [Thiorhodococcus drewsii AZ1]
Length = 365
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 175/323 (54%), Gaps = 12/323 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+DP+++ + + A VV + ++ +A + ++A EA D L + A L
Sbjct: 46 IWNDPSRAQALGRERATLEAVVLTIDEMTAALTDADELLEMAAEEADDETLT--SLVADL 103
Query: 67 DV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E ++ G D + A V I+AGS G + WAE LL M++RW ++ G++
Sbjct: 104 ETYESRVAELEFRRMFSGEMDSKNAFVDIQAGSGGTEAQDWAEMLLRMFLRWGERRGFKT 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ + G+KSATI FE EYAFG+L ETG H L+ F +G+ H + A + V
Sbjct: 164 ELMEASPGEVAGIKSATIRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASLFV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P ++ S +++I+ DL ++ + G+ + + A I H+PTG+ Q +R+
Sbjct: 223 SP-EVDDSVEIEINPADLRIDVYRASGAGGQHVNRTESAVRITHMPTGLVTQCQNDRSQH 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK +A+ +LKAKL + ++ + ++ W + R YV + ++D++TG+
Sbjct: 282 KNKDQAMKQLKAKLYELEMQKRQATQQALEDTKSDIGWGSQIRSYVLDQSR-IKDLRTGV 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINS 322
++ + SVLDGN+ PFIEA + S
Sbjct: 341 EIANTQSVLDGNLDPFIEASLKS 363
>gi|251780395|ref|ZP_04823315.1| peptide chain release factor 2 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084710|gb|EES50600.1| peptide chain release factor 2 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 325
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 166/328 (50%), Gaps = 18/328 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEMEAIDYGLFKRAYRA 64
W+D ++ E+ +S ++ + ++ R ++ ++KL I L EM +D + AY
Sbjct: 6 FWNDTKRAEEIT---KESKRIKDKIQ--RVESVQSKLDDIEVLKEM--MDDDDEESAYEI 58
Query: 65 SLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
++ ++ +D Y M LL G D A +T+ G G W E LL MY RW +K+
Sbjct: 59 INNIKEIEEEIDNYNMEILLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKK 118
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
Y+ V+D G+KS T++ EYA+GYL E G H L+ N + + + A
Sbjct: 119 NYKVEVIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFAS 178
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
++V+P L D+ I ED+ + + G+ + A I HIPTG+ VQ ER
Sbjct: 179 MEVLP-ELTKEQDIDIRSEDIKVDTYRASGAGGQHINKTDSAVRITHIPTGVVVQCQNER 237
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ F+NK A+ LKAKL+ + + + E W + R YV HPY LV+D +
Sbjct: 238 SQFSNKDTAMGMLKAKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHR 297
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRR 324
T +++ + +V+DG++ FI +++ S +
Sbjct: 298 TNVEVSNVTAVMDGDLDLFINSYLKSSK 325
>gi|188590075|ref|YP_001919915.1| peptide chain release factor 2 [Clostridium botulinum E3 str.
Alaska E43]
gi|188500356|gb|ACD53492.1| peptide chain release factor 2 [Clostridium botulinum E3 str.
Alaska E43]
Length = 344
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 166/328 (50%), Gaps = 18/328 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEMEAIDYGLFKRAYRA 64
W+D ++ E+ +S ++ + ++ R ++ ++KL I L EM +D + AY
Sbjct: 25 FWNDTKRAEEIT---KESKRIKDKIQ--RVESVQSKLDDIEVLKEM--MDDDDEESAYEI 77
Query: 65 SLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
++ ++ +D Y M LL G D A +T+ G G W E LL MY RW +K+
Sbjct: 78 INNIKEIEEEIDNYNMEILLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKK 137
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
Y+ V+D G+KS T++ EYA+GYL E G H L+ N + + + A
Sbjct: 138 NYKVEVIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFAS 197
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
++V+P L D+ I ED+ + + G+ + A I HIPTG+ VQ ER
Sbjct: 198 MEVLPE-LTKEQDIDIRSEDIKVDTYRASGAGGQHINKTDSAVRITHIPTGVVVQCQNER 256
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ F+NK A+ LKAKL+ + + + E W + R YV HPY LV+D +
Sbjct: 257 SQFSNKDTAMGMLKAKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHR 316
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRR 324
T +++ + +V+DG++ FI +++ S +
Sbjct: 317 TNVEVSNVTAVMDGDLDLFINSYLKSSK 344
>gi|329946372|ref|ZP_08293939.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328527348|gb|EGF54346.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 373
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 173/333 (51%), Gaps = 15/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++ L + E+ + + +LA E D + A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGDDAAEILAEAES 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLTAISKDLSDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHEY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V E++
Sbjct: 223 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSMQDEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D+
Sbjct: 282 IQNRAAAMRVLQSRLLLLKQQEE----DAKKKELAGDVKASWGDQMRSYVLNPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+T ++ + +SV DG+I FI+A I R+ +T
Sbjct: 338 RTSFEVGNPDSVFDGDIDGFIDAGIRWRKQQET 370
>gi|270307933|ref|YP_003329991.1| peptide chain release factor 2 [Dehalococcoides sp. VS]
gi|270153825|gb|ACZ61663.1| peptide chain release factor 2 [Dehalococcoides sp. VS]
Length = 357
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 160/320 (50%), Gaps = 9/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + V+ KLA + + + L + + + +LA + D L
Sbjct: 34 DFWQDQQNAQRVMKKLAANKRTSELWRGLERRVND---LTELAVLSYEDPSLSNEIEHEI 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L+ E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 91 SGLTAELNSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D+ + GVKSAT++ + EYA+G+L E G H LI + + A V+++
Sbjct: 151 EILDQSPGEEAGVKSATLQIDGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEIM 210
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E S D+ I ED+ +F S G+ A I HIP+GI V S ER+
Sbjct: 211 PE-AEDSVDIDIKPEDIKIEMFRSSGPGGQNVQKVSTAVRITHIPSGIVVASQTERSQHQ 269
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L +KLL + + + +K E I W + R YV HPYK+V+D +T +
Sbjct: 270 NREIAMRILASKLLAVEIAKRAEERAKLKGERISAEWGNQIRSYVLHPYKMVKDHRTDYE 329
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + +VL+G + FI A++
Sbjct: 330 VGNAETVLEGELDGFINAYL 349
>gi|422555869|ref|ZP_16631631.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA2]
gi|314986213|gb|EFT30305.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA2]
Length = 371
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDASDFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 226 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 285 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 343 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 371
>gi|422438432|ref|ZP_16515276.1| peptide chain release factor 2 [Propionibacterium acnes HL092PA1]
gi|422493656|ref|ZP_16569956.1| peptide chain release factor 2 [Propionibacterium acnes HL086PA1]
gi|422516616|ref|ZP_16592725.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA2]
gi|422524027|ref|ZP_16600036.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA2]
gi|422531989|ref|ZP_16607935.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA1]
gi|422545058|ref|ZP_16620888.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA1]
gi|313792395|gb|EFS40490.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA1]
gi|313801469|gb|EFS42718.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA2]
gi|313838232|gb|EFS75946.1| peptide chain release factor 2 [Propionibacterium acnes HL086PA1]
gi|314963179|gb|EFT07279.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA1]
gi|315078242|gb|EFT50285.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA2]
gi|327453496|gb|EGF00151.1| peptide chain release factor 2 [Propionibacterium acnes HL092PA1]
Length = 371
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 226 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 285 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 343 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 371
>gi|406672993|ref|ZP_11080218.1| peptide chain release factor 2 [Bergeyella zoohelcum CCUG 30536]
gi|405587537|gb|EKB61265.1| peptide chain release factor 2 [Bergeyella zoohelcum CCUG 30536]
Length = 370
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 11/321 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP K+ VL +L K V + + E+ +++A A+ + +
Sbjct: 41 DFWDDPKKAESVLKQLRSKKKWVEDYQTIHSLFEDLQVLADFAKEDPDSETELDNEFPKL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L L+ E +L D A + I AG+ G WA L+ MY WADK GY+
Sbjct: 101 L---HLISDLEFKNMLSNEGDELSAVLQITAGAGGTESCDWASMLMRMYTMWADKNGYKI 157
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
R ++ GVK+ T+E + EYAFGYL GE G H L+ F + + H + V V
Sbjct: 158 RELNFQEGDVAGVKTVTLEIDGEYAFGYLKGENGVHRLVRISPFDSNAKRH-TSFVSVYV 216
Query: 183 VPLFLETSPDLQISDEDLLFSS---PSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
PL ++ + ++ I+ D+ F + G+ + + A ++H PTGI +++ R+
Sbjct: 217 YPL-VDDTIEININPADISFETMRASGAGGQNVNKVETAVRLRHAPTGIIIENSESRSQL 275
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK KAL LK++L I E+ + + I+ + W + R YV HPYKLV+DV++G
Sbjct: 276 QNKEKALQLLKSRLYEIELEERMKARNEIEANKMKIEWGSQIRNYVMHPYKLVKDVRSGH 335
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ D + V++G++ PF++A +
Sbjct: 336 ETSDVDGVMNGDLTPFLKAFL 356
>gi|30692917|ref|NP_198466.2| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
gi|332006669|gb|AED94052.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
Length = 391
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 147/260 (56%), Gaps = 18/260 (6%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 120 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 179
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 180 GIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 239
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 240 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 299
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAV------- 230
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AV
Sbjct: 300 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTDRVG 359
Query: 231 -----QSLGERNHFANKMKA 245
+S GE++ +++ K+
Sbjct: 360 CCRGEKSTGEQDESSDQTKS 379
>gi|406906745|gb|EKD47811.1| hypothetical protein ACD_65C00278G0002 [uncultured bacterium]
Length = 364
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 168/317 (52%), Gaps = 7/317 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD T + ++ + K++ + + + E+ +A++ + D+ F+ +++
Sbjct: 42 FWDDATHAKKISEEAGRIRKILEQWEGFQKEIEDTLELAEITD-PVTDHKTFRELEKSAE 100
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD+ + L G D A V+I +G+ G+ + WAE LL MY+R+A+K+ ++
Sbjct: 101 EFQKKLDKLSIQLYLGGRYDNSDAIVSIHSGTGGVDAQDWAEMLLRMYLRYAEKKEWQVE 160
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+V+K + G+KSA I + +A+G L E G H L+ N E + A V+V P
Sbjct: 161 LVEKTAAEEAGIKSAEISVKGPFAYGMLKEEHGVHRLVRMSPFNSGGTRETSFALVEVTP 220
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ ET D++I++ DL F S G+ + A + H PTG+ V+ ER+ N
Sbjct: 221 IIHETD-DVEINESDLEIDTFRSGGAGGQHVNKTDSAVRLTHKPTGLVVKCQNERSQLQN 279
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ LK+KL+ + + + +S +K E + + W + R YV HPYK+V+D +T +
Sbjct: 280 KQTAMRILKSKLIALREKHDLKEISDLKGEHVQHSWGNQIRSYVLHPYKMVKDHRTDYET 339
Query: 302 PDFNSVLDGNIKPFIEA 318
+ VLDG++ FIEA
Sbjct: 340 SQVDDVLDGDLDDFIEA 356
>gi|299535985|ref|ZP_07049304.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZC1]
gi|424739932|ref|ZP_18168347.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZB2]
gi|298728590|gb|EFI69146.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZC1]
gi|422946464|gb|EKU40873.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZB2]
Length = 328
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 162/330 (49%), Gaps = 11/330 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
M+ WDD + +V++ + LK +VN KDL E + +L E + +
Sbjct: 1 MMLEPGFWDD-QQGAQVIINEGNGLKAIVNEYKDLVETHENLDMTLELLREEPDEELQEE 59
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ K+ D +E+ LL GP D A + + G+ G + W LL MY RWA+
Sbjct: 60 LGKELAEFQQKMAD-FELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTRWAE 118
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
K G++ VD G+KS T+ + AFGYL E G H L+ F + H +
Sbjct: 119 KRGFKVETVDYLPGDEAGIKSVTLSIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRHTSF 178
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
++C DV+P F + + ++ I EDL + + G+ + A I HIPTG VQ
Sbjct: 179 VSC-DVMPEF-DDNIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTIVQCQ 236
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ N+ KA+ LK KL + ++ + + I+ E W + R YV HPY +V+
Sbjct: 237 AERSQIKNREKAMTMLKGKLYQLELDKQQAQLDEIRGEQKEIGWGSQIRSYVFHPYSMVK 296
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
D +T + + +V+DG++ PFI A++ S+
Sbjct: 297 DHRTNEETGNVGAVMDGDLDPFINAYLRSK 326
>gi|308271179|emb|CBX27788.1| Peptide chain release factor 2 [uncultured Desulfobacterium sp.]
Length = 344
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 168/333 (50%), Gaps = 13/333 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++ N W++ K+ +L + V + K L EE +++ LA I+ K
Sbjct: 17 LISKDNFWENHDKATPLLKERTFISGKVESFKSLLKDLEECEILYSLA----IEESDSKT 72
Query: 61 AYRASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
S+ + KL +++ + +L G +D+ A V+I AG+ G + W+E L MY RW
Sbjct: 73 IEEVSVQIQKLKEKINKLSLLLMLDGEDDINNAIVSINAGAGGTEAQDWSEILFRMYSRW 132
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
+K+G++ ++D G+KS TI E +YA+GYL E G H L+ N +
Sbjct: 133 IEKKGFKSTIIDFQPGDEAGIKSVTITVEGDYAYGYLKTEIGVHRLVRISPFNANGKRHT 192
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V V P L+ S ++ I ++DL +F S G+ + A I H+PTGI VQ
Sbjct: 193 SFASVFVYPE-LDNSIEIDIDEKDLRIDIFRSSGAGGQHVNKTSSAIRITHLPTGIVVQC 251
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A++ LK++L + ++ + I W + R YV HPY+L+
Sbjct: 252 QQERSQHKNKDMAMSVLKSRLYQLEKQKQDDKMQEIHDGKDEIAWGNQIRSYVLHPYQLI 311
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+D + ++ + +VLDG I PFIE + SR++
Sbjct: 312 KDHRINLETGNAAAVLDGAIDPFIEGVLLSRKA 344
>gi|418629644|ref|ZP_13192140.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU127]
gi|420195445|ref|ZP_14701237.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM021]
gi|374833175|gb|EHR96870.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU127]
gi|394263240|gb|EJE07979.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM021]
Length = 333
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 160/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +++D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMIKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA++ S
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYLRKEMDS 330
>gi|354807385|ref|ZP_09040854.1| peptide chain release factor 2 [Lactobacillus curvatus CRL 705]
gi|354514107|gb|EHE86085.1| peptide chain release factor 2 [Lactobacillus curvatus CRL 705]
Length = 332
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 11/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W D K+ + L+ +++K ++ L+ ++EE ++ +L + E + ++ A
Sbjct: 5 DFWSD-QKAAQQLIDQNNAIKEKYDSFMQLQAQSEELQVTLELLQEEPD--AELQTSFEA 61
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L V + QYE+ +LL G D A V + G+ G + W LL MY+RWAD G+
Sbjct: 62 DLTAVQAQMQQYELGQLLSGDYDSNNAIVELHPGAGGTESQDWGSMLLRMYLRWADAHGF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VD 181
D + G+KS T+ + A+G L E G H L+ P S T C VD
Sbjct: 122 TVETEDYQAGEEAGIKSVTLMIKGHNAYGMLRSEKGVHRLVRISPFDSAGRRHTSFCSVD 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ S D+++ EDL +F S G+ + A + H+PTGI V S +R+
Sbjct: 182 VMPE-LDDSIDIEVRTEDLRIDVFRSSGAGGQHINKTSSAVRLTHLPTGIVVSSQAQRSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+N LKAKL E+ + IK E + W + R YV HPY +V+D +T
Sbjct: 241 LQNRETAMNMLKAKLYQKEQEEQAKKAAAIKGEQLEIGWGSQIRSYVFHPYTMVKDHRTD 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHIN 321
+ + +V+DG++ PF+ A++
Sbjct: 301 YETGNGQAVMDGDLDPFMYAYLQ 323
>gi|384917335|ref|ZP_10017462.1| Peptide chain release factor 2 [Methylacidiphilum fumariolicum
SolV]
gi|384525243|emb|CCG93335.1| Peptide chain release factor 2 [Methylacidiphilum fumariolicum
SolV]
Length = 337
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 14/314 (4%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKL 71
+KS E+ KL+D ++N KDL + K E+ D L + R + S L
Sbjct: 18 SKSKELKAKLSDYYTILNRFKDLEALFDLLK--------ESGDVSLLEELEREIKNYSDL 69
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD E+ +L P D + A ++I AG+ G WA LL MY R+A++ GY+ +VD
Sbjct: 70 LDSVEVKLILSDPLDQKNAILSIHAGAGGTEACDWAAMLLRMYQRYAERHGYKVSLVDIL 129
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KSA+I YA+GYL E G H L+ N + + A VDVV ET
Sbjct: 130 PGEEAGIKSASILVSGNYAYGYLKAERGVHRLVRISPFNAQGKRQTSFASVDVVAEVDET 189
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
D++I + DL +F S G+ + A I H+PTG+ V ER+ N+ AL
Sbjct: 190 -IDIEIKESDLKIDVFRSSGHGGQGVNTTDSAVRITHLPTGLVVVCQNERSQLQNRATAL 248
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
L+++L + ++ + + I + W R+ R YV PYK+V+D++TG
Sbjct: 249 KILRSRLYELEKDKKRAEMERIYGQKGEIGWGRQIRSYVLQPYKMVKDLRTGESRSQVEE 308
Query: 307 VLDGNIKPFIEAHI 320
VLDG++ FI A++
Sbjct: 309 VLDGDLDSFIWAYL 322
>gi|335044896|ref|ZP_08537919.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 108
str. F0425]
gi|363896223|ref|ZP_09322777.1| peptide chain release factor 2 [Oribacterium sp. ACB7]
gi|333758682|gb|EGL36239.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 108
str. F0425]
gi|361961231|gb|EHL14449.1| peptide chain release factor 2 [Oribacterium sp. ACB7]
Length = 378
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 165/338 (48%), Gaps = 33/338 (9%)
Query: 1 MVRNYNLWDDPTKSN-------------EVLVKLADSLKVVNALKDLRYKAEEAKLIAQL 47
M+ + W D K N E +KL + + ++AL + + E+A +I ++
Sbjct: 40 MMEEPDFWADAEKGNKLSTEASHLKDEVEGFLKLKEDYEDIDALIQMGKEEEDASVIPEI 99
Query: 48 AEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWA 107
EM A S+ L+ + LL G D + + AG+ G WA
Sbjct: 100 KEMLA--------------RFSEELENMNTTLLLSGEYDSMNVILRLNAGAGGTEANDWA 145
Query: 108 EQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167
L MY RWA++ G+ +++D G+KS T+E +YA+GYL E+G H L+
Sbjct: 146 GILYRMYTRWAERHGFSVKILDYLDGDEAGIKSVTMEVVGQYAYGYLRSESGIHRLVRIS 205
Query: 168 --NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQ 222
N + + DV+P +ET D+++ +ED+ +F + G+ + A +
Sbjct: 206 PFNAQGKRQTSFVSCDVMP-DIETDIDIEVREEDIKMEVFRASGAGGQHINKTSSAVRLI 264
Query: 223 HIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETR 282
HIPTG V ER+ NK KA+ LK KL + E+ + ++ I+ E N W + R
Sbjct: 265 HIPTGFVVACQEERSQIQNKNKAMQMLKTKLYLKEKEEQEAKLAGIRGEVKDNGWGSQIR 324
Query: 283 RYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
YV PY++V+D++TG + + ++VLDG+I FI A++
Sbjct: 325 SYVLQPYRMVKDLRTGEETGNTDAVLDGDIDRFITAYL 362
>gi|325291337|ref|YP_004267518.1| peptide chain release factor 2 (bRF-2) [Syntrophobotulus glycolicus
DSM 8271]
gi|324966738|gb|ADY57517.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophobotulus
glycolicus DSM 8271]
Length = 371
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 164/329 (49%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + +++ +L + V +L+ + E+ +++ Q+A ME D L +
Sbjct: 43 DFWDDRSNAQKIMQELTGNKDKVALFGELKTETEDLEVLWQMA-MEEDDSSLEDEIVKDI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ D+ E+ LL G D A +T+ +G+ G + W + L MY+RW ++ Y+
Sbjct: 102 HRIRAQYDELELEILLSGEYDRNNAIITLHSGAGGTEAQDWVQMLYRMYLRWGERRRYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KS T E AFGY E G H L+ + S + A VDV+
Sbjct: 162 ETLDLLPGEEAGIKSVTFSLAGENAFGYAKCEKGVHRLVRISPFDSSGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQIS--DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
P E + D++I+ EDL + S G+ + A I HIP+GI VQ ER+
Sbjct: 222 P---EVNEDMEINIDSEDLKVDTYRSGGAGGQHVNKTDSAVRITHIPSGIIVQCQSERSQ 278
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ + L+AKLL + +Q + I+ E W + R YV HPY +V+D +T
Sbjct: 279 IQNRAYCMRILQAKLLELKRKQQEEELLEIRGELNDIAWGSQIRSYVFHPYSMVKDHRTN 338
Query: 299 IQLPDFNSVLDGNIKPFIEAHI--NSRRS 325
+ + NSV+DG I FI A++ N+R++
Sbjct: 339 TETGNVNSVMDGEIDLFISAYLKQNARKA 367
>gi|365826624|ref|ZP_09368533.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 849 str.
F0330]
gi|365265903|gb|EHM95631.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 849 str.
F0330]
Length = 396
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 173/333 (51%), Gaps = 15/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++ L + E+ + + +LA E D + A
Sbjct: 66 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGDDAAEILAEAET 125
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 126 DLAAISKDLSDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHDY 185
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 186 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 245
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V E++
Sbjct: 246 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSMQDEKSQ 304
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D+
Sbjct: 305 IQNRAAAMRVLQSRLLLLKQQEE----DAKKKELAGDVKASWGDQMRSYVLNPYQMVKDL 360
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+T ++ + +SV DG+I FI+A I R+ +T
Sbjct: 361 RTNFEVGNPDSVFDGDIDGFIDAGIRWRKQQET 393
>gi|239636633|ref|ZP_04677635.1| peptide chain release factor 2 [Staphylococcus warneri L37603]
gi|239597988|gb|EEQ80483.1| peptide chain release factor 2 [Staphylococcus warneri L37603]
Length = 330
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 158/325 (48%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WDD ++ +++ K +VN +L E+ +L + E D + +
Sbjct: 1 MMTEPNFWDDQNRAQDIIDKNNALKSMVNGYYELEESVEDMSATVELLQ-EEFDEDMKQE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ +D +E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LENNVVEFKAEIDHFELQLLLDGPYDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 SGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFDNDEIEIEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG+I PFIEA++
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIEAYL 324
>gi|445060263|ref|YP_007385667.1| peptide chain release factor 2 [Staphylococcus warneri SG1]
gi|443426320|gb|AGC91223.1| peptide chain release factor 2 [Staphylococcus warneri SG1]
Length = 329
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD ++ +++ K +VN +L E+ +L + E D + +
Sbjct: 5 NFWDDQNRAQDIIDKNNALKSMVNGYYELEETVEDMSATVELLQ-EEFDEDMKQELENNV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D +E+ LL GP D A + + G+ G + W LL MY R+ ++ G++
Sbjct: 64 IEFKSEIDHFELQLLLDGPYDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQSGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PDFDNDEIEIEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
++V+DG+I PFIEA++
Sbjct: 304 TGKVDAVMDGDIGPFIEAYL 323
>gi|392530220|ref|ZP_10277357.1| peptide chain release factor 2 [Carnobacterium maltaromaticum ATCC
35586]
Length = 330
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 162/323 (50%), Gaps = 9/323 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ V+ + + N + L EE L+ ++ + E + +
Sbjct: 6 FWDDGIKAQNVINEANIIKEKYNQFQQLAETKEELDLLLEMVKEEEDAELEKELEENLTT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ +LDQ+E+ LL P D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 66 FLA-VLDQFELDMLLSEPYDKNNAIIELHPGAGGTESQDWGSMLLRMYTRWAEKKGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D G+KS T+ + A+GYL E G H L+ F + H + +DV+
Sbjct: 125 YLDYQDGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSAGRRH-TSFVSIDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E + D+QI+ +DL + + G+ + A I H+PTG+ V S +R+
Sbjct: 184 PE-MEDNVDIQINTDDLRIDTYRASGAGGQHINKTDSAVRITHLPTGVVVASQAQRSQMK 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK +A+ LKAKL + E+ ++ I+ E W + R YV HPY +++D +T +
Sbjct: 243 NKDQAMGMLKAKLYQLELEEKEKQMAEIRGEQKEIGWGSQIRSYVFHPYSMIKDHRTNYE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ V+DG++ PFI+A++ S+
Sbjct: 303 TGNVQGVMDGDLDPFIDAYLKSK 325
>gi|206890892|ref|YP_002247867.1| peptide chain release factor 2 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742830|gb|ACI21887.1| peptide chain release factor 2 [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 287
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 146/279 (52%), Gaps = 6/279 (2%)
Query: 47 LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIW 106
+AE E Y L K ++ ++ E+ LL+G +D A V+I G+ G + W
Sbjct: 3 IAETEEDGYLLLKDLEEEVENIKSQIEHLEIKLLLKGEHDKNNAIVSIHPGAGGTESQDW 62
Query: 107 AEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF 166
AE L+ MY+RWA+K+G++ +VD + G+K T E +YA+GYL E+G H L+
Sbjct: 63 AEILMRMYLRWAEKKGFKVEIVDLQLGEEAGIKDVTFTVEGQYAYGYLKCESGVHRLVRV 122
Query: 167 P--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACI 221
+ + + A V V+P +E + ++I DED+ F + G+ + A I
Sbjct: 123 SPFDANKRRHTSFAAVSVLPE-IEDNIQVEIKDEDIRVDTFRASGAGGQHVNKVSSAVRI 181
Query: 222 QHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRET 281
HIPTGI V ER+ N+ A+ L++K+ ++ ++ + I W +
Sbjct: 182 VHIPTGIIVTCQTERSQHRNREIAMKILRSKIYALLQKEQEDKIKSITGNKKEIAWGSQI 241
Query: 282 RRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
R Y+ HPY+L++D +T I++ + VLDGNI FIE ++
Sbjct: 242 RSYILHPYRLIKDHRTDIEVYNVEDVLDGNIDIFIETYL 280
>gi|50842838|ref|YP_056065.1| peptide chain release factor 2 [Propionibacterium acnes KPA171202]
gi|289426937|ref|ZP_06428661.1| peptide chain release factor 2 [Propionibacterium acnes J165]
gi|295130890|ref|YP_003581553.1| peptide chain release factor 2 [Propionibacterium acnes SK137]
gi|335051297|ref|ZP_08544223.1| peptide chain release factor 2 [Propionibacterium sp. 409-HC1]
gi|335053701|ref|ZP_08546532.1| peptide chain release factor 2 [Propionibacterium sp. 434-HC2]
gi|342213500|ref|ZP_08706225.1| peptide chain release factor 2 [Propionibacterium sp. CC003-HC2]
gi|354607317|ref|ZP_09025287.1| peptide chain release factor 2 [Propionibacterium sp. 5_U_42AFAA]
gi|386024313|ref|YP_005942618.1| peptide chain release factor 2 [Propionibacterium acnes 266]
gi|387503733|ref|YP_005944962.1| peptide chain release factor 2 [Propionibacterium acnes 6609]
gi|407935764|ref|YP_006851406.1| peptide chain release factor 2 [Propionibacterium acnes C1]
gi|417929478|ref|ZP_12572862.1| peptide chain release factor 2 [Propionibacterium acnes SK182]
gi|81611548|sp|Q6A808.1|RF2_PROAC RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|50840440|gb|AAT83107.1| peptide chain release factor 2 [Propionibacterium acnes KPA171202]
gi|289159877|gb|EFD08057.1| peptide chain release factor 2 [Propionibacterium acnes J165]
gi|291375816|gb|ADD99670.1| peptide chain release factor 2 [Propionibacterium acnes SK137]
gi|332675771|gb|AEE72587.1| peptide chain release factor 2 [Propionibacterium acnes 266]
gi|333766370|gb|EGL43676.1| peptide chain release factor 2 [Propionibacterium sp. 434-HC2]
gi|333767186|gb|EGL44444.1| peptide chain release factor 2 [Propionibacterium sp. 409-HC1]
gi|335277778|gb|AEH29683.1| peptide chain release factor 2 [Propionibacterium acnes 6609]
gi|340769044|gb|EGR91569.1| peptide chain release factor 2 [Propionibacterium sp. CC003-HC2]
gi|340773601|gb|EGR96093.1| peptide chain release factor 2 [Propionibacterium acnes SK182]
gi|353557432|gb|EHC26801.1| peptide chain release factor 2 [Propionibacterium sp. 5_U_42AFAA]
gi|407904345|gb|AFU41175.1| peptide chain release factor 2 [Propionibacterium acnes C1]
gi|456738476|gb|EMF63043.1| peptide chain release factor 2 [Propionibacterium acnes FZ1/2/0]
Length = 368
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 223 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 282 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 340 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 368
>gi|357056769|ref|ZP_09117798.1| peptide chain release factor 2 [Clostridium clostridioforme
2_1_49FAA]
gi|355379608|gb|EHG26764.1| peptide chain release factor 2 [Clostridium clostridioforme
2_1_49FAA]
Length = 338
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP +S ++ + + V+ + L + E+ +++ Q+ E D L
Sbjct: 6 FWDDPEQSTRMVRESKNLKDEVDTYRALEQQYEDIQVMIQMG-YEENDSSLIPEIEEMLE 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L+ M LL G D A + + AG+ G W L MY RWA+ +G++
Sbjct: 65 QFKETLENMRMKLLLSGEYDSNNAILRLNAGAGGTESCDWCSILYRMYCRWAESKGFKAH 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KS T++ + E A+GYL E G H L+ N + + + DV+P
Sbjct: 125 VLDFLDGEEAGIKSVTVQIDGENAYGYLRSEHGVHRLVRISPFNSAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D++++ +D+ + S G+ + A I H PTGI V ER+ F N
Sbjct: 185 -NIEEDIDIEVNPDDIRVDTYRSSGAGGQHINKTSSAIRITHFPTGIVVTCQNERSQFQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKLL++ E+ + + I+ + W + R YV PY +V+D +TG +
Sbjct: 244 KEKAMQMLKAKLLMVKQEEQAAKAAGIRGDVKDIGWGSQIRSYVLQPYTMVKDHRTGEES 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDG I FI A++
Sbjct: 304 GNVDAVLDGAIDNFISAYL 322
>gi|282853672|ref|ZP_06263009.1| peptide chain release factor 2 [Propionibacterium acnes J139]
gi|386071135|ref|YP_005986031.1| peptide chain release factor 2 [Propionibacterium acnes ATCC 11828]
gi|422465572|ref|ZP_16542165.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA4]
gi|422468031|ref|ZP_16544570.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA3]
gi|282583125|gb|EFB88505.1| peptide chain release factor 2 [Propionibacterium acnes J139]
gi|314983205|gb|EFT27297.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA3]
gi|315092426|gb|EFT64402.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA4]
gi|353455501|gb|AER06020.1| peptide chain release factor 2 [Propionibacterium acnes ATCC 11828]
Length = 368
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 223 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 282 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 340 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 368
>gi|363899702|ref|ZP_09326210.1| peptide chain release factor 2 [Oribacterium sp. ACB1]
gi|395208290|ref|ZP_10397531.1| peptide chain release factor 2 [Oribacterium sp. ACB8]
gi|361958000|gb|EHL11303.1| peptide chain release factor 2 [Oribacterium sp. ACB1]
gi|394705871|gb|EJF13395.1| peptide chain release factor 2 [Oribacterium sp. ACB8]
Length = 378
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 160/325 (49%), Gaps = 7/325 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + W D K+N + ++ + L+ E+ + Q+ + E D +
Sbjct: 40 MMEEPDFWSDAEKANRLSTEVRHLKDEAESFYQLKTSYEDIDALIQMGKEEG-DESVIPE 98
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
S+ L+ + LL G D + + AG+ G WA L MY+RWA++
Sbjct: 99 IREMLSQFSEDLENMNTTLLLSGEYDSMNVILRLNAGAGGTEANDWAGILYRMYIRWAER 158
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G+ +++D G+KS T+E +YA+GYL E G H L+ N + +
Sbjct: 159 HGFSVKILDYLDGDEAGIKSVTMEVVGQYAYGYLRSEAGIHRLVRISPFNAQGKRQTSFV 218
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P +ET D+++ +ED+ +F + G+ + A + HIPTGI V E
Sbjct: 219 SCDVMP-DIETEIDIEVREEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGIVVACQEE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ NK KA+ LK KL + E+ + ++ I+ E N W + R YV PY++V+D+
Sbjct: 278 RSQLQNKNKAMQMLKTKLYLKEKEEQEAKLAGIRGEVKDNGWGSQIRSYVLQPYRMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+TG + + ++VLDG+I FI A++
Sbjct: 338 RTGEETGNTDAVLDGDIDRFITAYL 362
>gi|422390308|ref|ZP_16470403.1| peptide chain release factor 2 [Propionibacterium acnes HL103PA1]
gi|422459156|ref|ZP_16535804.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA2]
gi|422465250|ref|ZP_16541857.1| peptide chain release factor 2 [Propionibacterium acnes HL060PA1]
gi|422564398|ref|ZP_16640049.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA2]
gi|422575575|ref|ZP_16651113.1| peptide chain release factor 2 [Propionibacterium acnes HL001PA1]
gi|314923649|gb|EFS87480.1| peptide chain release factor 2 [Propionibacterium acnes HL001PA1]
gi|314967087|gb|EFT11186.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA2]
gi|315092708|gb|EFT64684.1| peptide chain release factor 2 [Propionibacterium acnes HL060PA1]
gi|315103819|gb|EFT75795.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA2]
gi|327327221|gb|EGE68997.1| peptide chain release factor 2 [Propionibacterium acnes HL103PA1]
Length = 371
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 226 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 285 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 343 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 371
>gi|253680935|ref|ZP_04861738.1| peptide chain release factor 2 [Clostridium botulinum D str. 1873]
gi|253562784|gb|EES92230.1| peptide chain release factor 2 [Clostridium botulinum D str. 1873]
Length = 327
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 169/319 (52%), Gaps = 13/319 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ K+ E+ + + + + + E+ K++ +++ +E D +
Sbjct: 5 NFWDNINKAQEITQEAKGLKDKIEKYYNTKNRLEDLKVLIEIS-IEEDDESSVEEILNEI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V ++D++++ LL G D A V++ AG+ G + W E LL MY RWA+ +GY+
Sbjct: 64 KEVKVIIDEFKVQILLSGEYDKNNAIVSLHAGAGGTDAQDWTEMLLRMYTRWAEAKGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KSA+++ E+A+GYL E G H L+ N + + + A ++V+
Sbjct: 124 EILDILPGDEAGIKSASLKIMGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E S D++I +DL + + G+ + A I HIPTGI VQS ER+ F
Sbjct: 184 PELTE-SQDIEIKSDDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQSERSQFQ 242
Query: 241 NKMKALNRLKAKLLVI---VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A++ LK+KL+ + ++ + ++S +E W + R YV PY +V+D +T
Sbjct: 243 NKDTAMSMLKSKLVELKERAHKEKIEDLSGDLKEI---GWGSQIRSYVFQPYTMVKDHRT 299
Query: 298 GIQLPDFNSVLDGNIKPFI 316
++ + ++V+DG+I FI
Sbjct: 300 NTEMTNVDAVMDGDIDIFI 318
>gi|377556378|ref|ZP_09786085.1| Peptide chain release factor 2 [Lactobacillus gastricus PS3]
gi|376168428|gb|EHS87197.1| Peptide chain release factor 2 [Lactobacillus gastricus PS3]
Length = 332
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 159/324 (49%), Gaps = 17/324 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKD----LRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
WDD N+ KL D + +D L+ + + L +EA D L K
Sbjct: 6 FWDD----NQQAQKLIDETNQLKGRRDTFLSLQTAVNDLIDLRDLLSLEA-DADLEKELE 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ +++Y++++LL GP D A + I G+ G + W E LL MY RWA++
Sbjct: 61 NNLRRTTSEVEKYQLNQLLDGPYDANNAILEIHPGAGGTEAQDWGEMLLRMYTRWAEQHQ 120
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y+ + + + G+KS T+ + A+G+L E G H L+ F + + H + A
Sbjct: 121 YQVEIANYEAGEEAGIKSVTLIIKGHNAYGFLHPEKGVHRLVRISPFDSANRRH-TSFAS 179
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
+DV+P ++ S ++ I+ DL F S G+ + A I H+PTGI S ER
Sbjct: 180 IDVMP-EMDDSIEIDINSADLRVDTFRSSGAGGQHINKTDSAIRITHLPTGIVTSSQAER 238
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ A+ LK+KL + E+ + + I E + N W + R YV HPY LV+D +
Sbjct: 239 SQLQNRETAMRMLKSKLYELEQEKQAAERAKIAGEQLENGWGSQIRSYVLHPYSLVKDTR 298
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI 320
TG + D VLDG++ PFI A +
Sbjct: 299 TGYETHDTQGVLDGDLDPFINAFL 322
>gi|404417308|ref|ZP_10999110.1| peptide chain release factor 2 [Staphylococcus arlettae CVD059]
gi|403490321|gb|EJY95864.1| peptide chain release factor 2 [Staphylococcus arlettae CVD059]
Length = 332
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 165/332 (49%), Gaps = 24/332 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA---Y 62
N WDD + V+ K NALK + E KL +QL +M+A L +
Sbjct: 5 NFWDDQNTAQSVIDK-------NNALKSV--VTEFRKLESQLEDMDATRELLAEEQDEDM 55
Query: 63 RASLDVSKL------LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+A L V+++ LDQ+E+ LL GP D A + + G+ G + W LL MY R
Sbjct: 56 QADL-VTQVQAFKGDLDQFELQLLLDGPYDANNAILELHPGAGGTESQDWTSMLLRMYQR 114
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHE 174
+ +++G++ D GVKS TI + A+GYL E G H L+ + S
Sbjct: 115 YCEQKGFKVETADYLPGDEAGVKSVTIVVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 174
Query: 175 ATLACVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQ 231
+ A DV+P F T ++ I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 175 TSFASCDVIPEFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 234
Query: 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKL 291
+ ER+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +
Sbjct: 235 NQNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAAIRGEQKEIGWGSQIRSYVFHPYSM 294
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
V+D +T + ++V+DG+I PFIEA++ S+
Sbjct: 295 VKDHRTNKETGKVDAVMDGDIGPFIEAYLRSQ 326
>gi|237786018|ref|YP_002906723.1| peptide chain release factor 2 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758930|gb|ACR18180.1| peptide chain release factor RF-2 [Corynebacterium kroppenstedtii
DSM 44385]
Length = 379
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 167/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE--MEAIDYGLFKRAYR 63
+LWDDP + +V KL+ + + LR + ++ ++ +LA+ EA D A
Sbjct: 43 SLWDDPDHAQQVTSKLSHVQAQIKKVTTLRQRVDDMPVMYELADDATEAGDTDAADEARE 102
Query: 64 ASLDVSKLL----DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ + L + E+ +L G D A V I++ + G+ WAE L+ MY RW +
Sbjct: 103 MADSERETLRHEIESLEVQTMLSGEYDEREAVVNIRSAAGGVDAADWAEMLMRMYTRWTE 162
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
+ G++ V D + G+KSAT +Y +G LS E G H L+ + + +
Sbjct: 163 QHGHKIDVFDISYAEEAGIKSATFIVHGDYMYGQLSVEQGTHRLVRISPFDNQGRRQTSF 222
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A V+V+P+ +E + + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 223 AEVEVLPV-VEKTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQN 281
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
E++ NK A+ L AKLL E+ + ++ +K + N W + R YV HPY++V+D
Sbjct: 282 EKSQIQNKASAMRVLAAKLLDRKREEEQAEMNALKGDG-SNSWGNQMRSYVLHPYQMVKD 340
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
++T ++ D + VLDG++ F+EA I R
Sbjct: 341 LRTNYEVNDPSKVLDGDLDGFLEAGIRWR 369
>gi|383825061|ref|ZP_09980212.1| peptide chain release factor 2 [Mycobacterium xenopi RIVM700367]
gi|383335463|gb|EID13893.1| peptide chain release factor 2 [Mycobacterium xenopi RIVM700367]
Length = 368
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 177/333 (53%), Gaps = 20/333 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK-----RA 61
LW+D T++ +V +L+ + + +++LR + ++ ++ +LAE E L + +A
Sbjct: 44 LWEDQTRAQQVTSELSHAQGELRRVEELRRRLDDLPVLYELAEEEGGADTLAEADAELKA 103
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RA ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 104 LRADIEA------MEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLAC 179
Y V D + G+KSAT YA+G LS E G H L+ H + + A
Sbjct: 158 NYPVEVFDTSYAEEAGIKSATFAIHAPYAYGTLSVEQGTHRLVRLSPFDNQHRRQTSFAE 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V E+
Sbjct: 218 VEVLPV-VETTDHIDIPEGDIRVDVYRSSGPGGQSVNTTDSAVRLTHLPTGIVVTCQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NKM AL L+AKLL + + + +K + + W + R YV HPY++V+D++
Sbjct: 277 SQLQNKMSALRVLQAKLLERKRLEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI--NSRRSSD 327
T ++ + +VLDG+I F+EA I +RR D
Sbjct: 336 TDYEVSNPAAVLDGDIDGFLEAGIRWRNRRGDD 368
>gi|422396770|ref|ZP_16476801.1| peptide chain release factor 2 [Propionibacterium acnes HL097PA1]
gi|327329965|gb|EGE71719.1| peptide chain release factor 2 [Propionibacterium acnes HL097PA1]
Length = 370
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+K+AT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKAATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 225 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 284 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 341
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 342 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 370
>gi|169826759|ref|YP_001696917.1| peptide chain release factor 2 [Lysinibacillus sphaericus C3-41]
gi|168991247|gb|ACA38787.1| Peptide chain release factor 2 (RF-2) [Lysinibacillus sphaericus
C3-41]
Length = 328
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 163/330 (49%), Gaps = 11/330 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
M+ WDD + +V++ + LK +VN K+L E + +L E + +
Sbjct: 1 MMLEPGFWDD-QQGAQVIINEGNGLKAIVNEYKELEETHENLDMTLELLREEPDEELQEE 59
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ ++ + + +E+ LL GP D A + + G+ G + W LL MY RWA+
Sbjct: 60 LG-KELVEFQQKMADFELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTRWAE 118
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
K G++ +D G+KS TI + AFGYL E G H L+ F + H +
Sbjct: 119 KRGFKVETMDYLPGDEAGIKSVTISIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRHTSF 178
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
++C DV+P F E + ++ I EDL + + G+ + A I HIPTG VQ
Sbjct: 179 VSC-DVMPEFDE-NIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTVVQCQ 236
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ N+ KA+ LK KL + E+ + + I+ E W + R YV HPY +V+
Sbjct: 237 AERSQIKNREKAMAMLKGKLYQLELEKQQAQLDEIRGEQKDIGWGSQIRSYVFHPYSMVK 296
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
D +T + + +V+DG++ PFI A++ S+
Sbjct: 297 DHRTNEETGNVGAVMDGDLDPFINAYLRSK 326
>gi|289425462|ref|ZP_06427239.1| peptide chain release factor 2 [Propionibacterium acnes SK187]
gi|422385819|ref|ZP_16465944.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA3]
gi|422387631|ref|ZP_16467743.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA2]
gi|422392361|ref|ZP_16472431.1| peptide chain release factor 2 [Propionibacterium acnes HL099PA1]
gi|422426188|ref|ZP_16503112.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA1]
gi|422431380|ref|ZP_16508258.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA2]
gi|422449438|ref|ZP_16526163.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA3]
gi|422457000|ref|ZP_16533662.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA1]
gi|422462215|ref|ZP_16538839.1| peptide chain release factor 2 [Propionibacterium acnes HL038PA1]
gi|422475512|ref|ZP_16551959.1| peptide chain release factor 2 [Propionibacterium acnes HL056PA1]
gi|422478600|ref|ZP_16555019.1| peptide chain release factor 2 [Propionibacterium acnes HL007PA1]
gi|422480977|ref|ZP_16557380.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA1]
gi|422483483|ref|ZP_16559872.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA1]
gi|422486233|ref|ZP_16562589.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA2]
gi|422488286|ref|ZP_16564615.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA2]
gi|422490387|ref|ZP_16566702.1| peptide chain release factor 2 [Propionibacterium acnes HL020PA1]
gi|422495434|ref|ZP_16571721.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA1]
gi|422498157|ref|ZP_16574429.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA3]
gi|422501961|ref|ZP_16578206.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA2]
gi|422505918|ref|ZP_16582141.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA2]
gi|422507292|ref|ZP_16583496.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA2]
gi|422513734|ref|ZP_16589857.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA2]
gi|422518949|ref|ZP_16595017.1| peptide chain release factor 2 [Propionibacterium acnes HL074PA1]
gi|422522207|ref|ZP_16598237.1| peptide chain release factor 2 [Propionibacterium acnes HL045PA1]
gi|422527592|ref|ZP_16603582.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA1]
gi|422530188|ref|ZP_16606152.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA1]
gi|422534695|ref|ZP_16610619.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA1]
gi|422537031|ref|ZP_16612919.1| peptide chain release factor 2 [Propionibacterium acnes HL078PA1]
gi|422551888|ref|ZP_16627679.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA3]
gi|422560639|ref|ZP_16636326.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA1]
gi|422568300|ref|ZP_16643918.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA2]
gi|289154440|gb|EFD03128.1| peptide chain release factor 2 [Propionibacterium acnes SK187]
gi|313771879|gb|EFS37845.1| peptide chain release factor 2 [Propionibacterium acnes HL074PA1]
gi|313807112|gb|EFS45607.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA2]
gi|313809604|gb|EFS47340.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA1]
gi|313813321|gb|EFS51035.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA1]
gi|313819308|gb|EFS57022.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA2]
gi|313819957|gb|EFS57671.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA1]
gi|313823250|gb|EFS60964.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA2]
gi|313824962|gb|EFS62676.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA1]
gi|313829923|gb|EFS67637.1| peptide chain release factor 2 [Propionibacterium acnes HL007PA1]
gi|313833072|gb|EFS70786.1| peptide chain release factor 2 [Propionibacterium acnes HL056PA1]
gi|314924796|gb|EFS88627.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA3]
gi|314960646|gb|EFT04748.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA2]
gi|314972908|gb|EFT17005.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA1]
gi|314975668|gb|EFT19763.1| peptide chain release factor 2 [Propionibacterium acnes HL045PA1]
gi|314978052|gb|EFT22146.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA2]
gi|314984148|gb|EFT28240.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA1]
gi|314989571|gb|EFT33662.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA3]
gi|315080944|gb|EFT52920.1| peptide chain release factor 2 [Propionibacterium acnes HL078PA1]
gi|315084867|gb|EFT56843.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA2]
gi|315086040|gb|EFT58016.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA3]
gi|315088241|gb|EFT60217.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA1]
gi|315095727|gb|EFT67703.1| peptide chain release factor 2 [Propionibacterium acnes HL038PA1]
gi|315105991|gb|EFT77967.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA1]
gi|327327935|gb|EGE69709.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA3]
gi|327330072|gb|EGE71825.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA2]
gi|327442693|gb|EGE89347.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA1]
gi|327443908|gb|EGE90562.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA2]
gi|327443976|gb|EGE90630.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA2]
gi|328754956|gb|EGF68572.1| peptide chain release factor 2 [Propionibacterium acnes HL020PA1]
gi|328761406|gb|EGF74932.1| peptide chain release factor 2 [Propionibacterium acnes HL099PA1]
Length = 371
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 226 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 285 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 343 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 371
>gi|39997376|ref|NP_953327.1| peptide chain release factor 2 [Geobacter sulfurreducens PCA]
gi|409912720|ref|YP_006891185.1| peptide chain release factor 2 [Geobacter sulfurreducens KN400]
gi|39984267|gb|AAR35654.1| peptide chain release factor 2 [Geobacter sulfurreducens PCA]
gi|307634992|gb|ADI85036.2| peptide chain release factor 2 [Geobacter sulfurreducens KN400]
Length = 372
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 167/320 (52%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ ++ +VL + K+++ L +A++ +++ +L E EA D +
Sbjct: 44 FWDNNEEAQKVLRERTRIEKLIDLWDRLNRQADDIRVLIELGE-EAQDEATLDEVRALND 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + ++ E ++L GP+D V+I AG+ G + WAE LL MY+R+ +++G++
Sbjct: 103 SLEREVEGAEFQRMLSGPHDKNSCFVSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKTE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D GVKSAT + EYA+GYL E G H L+ F + + H + A V V
Sbjct: 163 ITDFQAGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E +++I++ DL + S G+ + A + H+PTGI V ER+
Sbjct: 222 PE-IEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLTHLPTGIVVACQCERSQHL 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKL ++ S + E W + R YV HPYK+V+D++TG++
Sbjct: 281 NKATALRMLRAKLYEKELQEREVQASELAGEKKDIGWGSQIRSYVLHPYKMVKDLRTGVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++VLDG ++ F+ A +
Sbjct: 341 SGNPDAVLDGALEDFVVAFL 360
>gi|416124887|ref|ZP_11595682.1| peptide chain release factor 2 [Staphylococcus epidermidis FRI909]
gi|319401169|gb|EFV89384.1| peptide chain release factor 2 [Staphylococcus epidermidis FRI909]
Length = 332
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 157/320 (49%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +V+ L ++ +L + E D + K
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQ-EEYDEDMKKELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
++V+DG I PFIEA++
Sbjct: 304 TGKVDAVMDGEIGPFIEAYL 323
>gi|147679087|ref|YP_001213302.1| protein chain release factor B [Pelotomaculum thermopropionicum SI]
gi|146275184|dbj|BAF60933.1| protein chain release factor B [Pelotomaculum thermopropionicum SI]
Length = 336
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 6/258 (2%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
V++ + + E++ LL GP D A V + AG+ G + W E LL MY RWA++ G++ V
Sbjct: 71 VAQKVAEMELTVLLSGPYDRGNAIVALHAGAGGTEAQDWVEMLLRMYTRWAERRGFKVEV 130
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+D G KSATIE A+GYL E G H L+ + + + A VDV+P
Sbjct: 131 LDLLPGDEAGTKSATIEVIGPNAYGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDVLP- 189
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANK 242
++ D++I+ +DL F S G+ + A I H+PTGI V ER+ AN+
Sbjct: 190 EVDDEVDVKINPDDLKIDTFRSGGAGGQHVNKTDSAVRITHLPTGIVVTCQNERSQLANR 249
Query: 243 MKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLP 302
+ A+ LKA+L+ + + + ++ ++ E W + R YV HPY LV+D +TG +
Sbjct: 250 LAAMKMLKARLIDLELRKKEAELAALRGEQQEIAWGSQIRSYVFHPYSLVKDHRTGHETG 309
Query: 303 DFNSVLDGNIKPFIEAHI 320
+ +V+DG I FI A++
Sbjct: 310 NVGAVMDGEIDSFIAAYL 327
>gi|315658891|ref|ZP_07911758.1| peptide chain release factor RF2 [Staphylococcus lugdunensis
M23590]
gi|315496015|gb|EFU84343.1| peptide chain release factor RF2 [Staphylococcus lugdunensis
M23590]
Length = 334
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 168/334 (50%), Gaps = 18/334 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVN-ALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
M+ N WDD K+ +++ K ++LK + DL + E+ +L + E +
Sbjct: 1 MMTEPNFWDDQNKAQDIIDK-NNALKAITMGYHDLDNEVEDMFATTELLQEE------YD 53
Query: 60 RAYRASLDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
+A L+++ L LDQ+E+ LL GP+D A + + G+ G + WA LL MY
Sbjct: 54 EDMKAELEMNVLAFNDKLDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMY 113
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
R+ ++ G++ VD G+KS T+ + A+GYL E G H L+ + S
Sbjct: 114 QRYCEQNGFKVETVDYLPGDEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGR 173
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ A DV+P F +++I+ +D+ F + G+ + + A I H PTGI
Sbjct: 174 RHTSFASCDVIPDFNNNEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIV 233
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
V + ER+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY
Sbjct: 234 VNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAQEMAEIRGEQKEIGWGSQIRSYVFHPY 293
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+V+D +T + ++V+DG+I PFIEA++ +
Sbjct: 294 SMVKDHRTNEETGKVDAVMDGDIGPFIEAYLRQQ 327
>gi|414084914|ref|YP_006993625.1| peptide chain release factor 2 [Carnobacterium maltaromaticum
LMA28]
gi|412998501|emb|CCO12310.1| peptide chain release factor 2 [Carnobacterium maltaromaticum
LMA28]
Length = 353
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 162/323 (50%), Gaps = 9/323 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ V+ + + N + L EE L+ ++ + E + +
Sbjct: 29 FWDDGIKAQSVINEANIIKEKYNQFQQLAETKEELDLLLEMVKEEEDAELEKELEENLTT 88
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ +LDQ+E+ LL P D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 89 FLA-VLDQFELDMLLSEPYDKNNAIIELHPGAGGTESQDWGSMLLRMYTRWAEKKGFKVE 147
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D G+KS T+ + A+GYL E G H L+ F + H + +DV+
Sbjct: 148 YLDYQDGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSAGRRH-TSFVSIDVI 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E + D+QI+ +DL + + G+ + A I H+PTG+ V S +R+
Sbjct: 207 PE-MEDNVDIQINTDDLRIDTYRASGAGGQHINKTDSAVRITHLPTGVVVASQAQRSQMK 265
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK +A+ LKAKL + E+ ++ I+ E W + R YV HPY +++D +T +
Sbjct: 266 NKDQAMGMLKAKLYQLELEEKEKQMAEIRGEQKEIGWGSQIRSYVFHPYSMIKDHRTNYE 325
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ V+DG++ PFI+A++ S+
Sbjct: 326 TGNVQGVMDGDLDPFIDAYLKSK 348
>gi|323486370|ref|ZP_08091695.1| hypothetical protein HMPREF9474_03446 [Clostridium symbiosum
WAL-14163]
gi|323695006|ref|ZP_08109153.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673]
gi|355624996|ref|ZP_09047980.1| peptide chain release factor 2 [Clostridium sp. 7_3_54FAA]
gi|323400352|gb|EGA92725.1| hypothetical protein HMPREF9474_03446 [Clostridium symbiosum
WAL-14163]
gi|323500950|gb|EGB16865.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673]
gi|354821641|gb|EHF06026.1| peptide chain release factor 2 [Clostridium sp. 7_3_54FAA]
Length = 335
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 155/319 (48%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP +S + + + + V + L + E+ +++ ++ E D +
Sbjct: 6 FWDDPERSTKTVREAKNLKDTVETYRHLEQQYEDIQIMIEMG-YEENDPSMIPEIQEMLD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L+ LL G D A + + AG+ G W L MY RWADK+GY
Sbjct: 65 EFINSLEDIRTKTLLSGEYDNCNAILKLNAGAGGTEAMDWCSMLYRMYQRWADKKGYTTE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS T++ E AFGYL E G H L+ N + + + DV+P
Sbjct: 125 VLDFLDGDEAGIKSITVQINGENAFGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D++++ +DL + S G+ + A I HIPTGI VQ ER+ F N
Sbjct: 185 -DIEEDLDIEVNQDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGIVVQCQNERSQFQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKL ++ ++ +S I+ + + + R YV PY LV+D +T +
Sbjct: 244 KDKAMQMLKAKLYLLKQQENAEKLSDIRGDVKDINFGNQIRSYVMQPYTLVKDHRTNAEN 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ N+V+DG+I FI A++
Sbjct: 304 GNVNAVMDGDIDLFISAYL 322
>gi|419421503|ref|ZP_13961731.1| peptide chain release factor 2 [Propionibacterium acnes PRP-38]
gi|379977994|gb|EIA11319.1| peptide chain release factor 2 [Propionibacterium acnes PRP-38]
Length = 367
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 102 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+K+AT +A+G LS E G H L+ + + + A V+V+
Sbjct: 162 EILDTSYAEEAGIKAATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 222 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 281 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 339 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 367
>gi|222056175|ref|YP_002538537.1| hypothetical protein Geob_3093 [Geobacter daltonii FRC-32]
gi|221565464|gb|ACM21436.1| hypothetical protein Geob_3093 [Geobacter daltonii FRC-32]
Length = 370
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 159/320 (49%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + +VL + K + + L + E+ +++ +L EA D + +
Sbjct: 44 FWDDNEAAQKVLKERTVMEKTLASWDRLNRQVEDIRVLIELGS-EAEDEATLAEVHDLND 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K L E K+L GP+D +I +G+ G + WAE LL MY+R+ +++G++
Sbjct: 103 QLEKGLVDAEFQKMLSGPHDASSCFFSINSGAGGTESQDWAEMLLRMYLRYCERKGWKTE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D GVK T EYA+GYL E G H L+ F + + H + A V V
Sbjct: 163 ITDYQSGDEAGVKGVTFSVSGEYAYGYLKAEVGIHRLVRISPFDSNARRH-TSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E D++I + DL F S G+ + A I HIPTGI V ER+
Sbjct: 222 PE-IEDDIDVKIVETDLRVDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVACQTERSQHM 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+AKL ++ S + I E W + R YV HPYK+V+D++TG++
Sbjct: 281 NRATAMRVLRAKLYERELQERESQAAEIAGEKKEIGWGSQIRSYVLHPYKMVKDLRTGVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++VLDG ++ FI A +
Sbjct: 341 SGNPDAVLDGELEQFIIAFL 360
>gi|289551384|ref|YP_003472288.1| peptide chain release factor 2 [Staphylococcus lugdunensis
HKU09-01]
gi|385784987|ref|YP_005761160.1| peptide chain release factor 2 [Staphylococcus lugdunensis N920143]
gi|289180915|gb|ADC88160.1| peptide chain release factor 2 [Staphylococcus lugdunensis
HKU09-01]
gi|339895243|emb|CCB54566.1| peptide chain release factor 2 [Staphylococcus lugdunensis N920143]
Length = 334
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 167/334 (50%), Gaps = 18/334 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVN-ALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
M+ N WDD K+ +++ K ++LK + DL + E+ +L + E +
Sbjct: 1 MMTEPNFWDDQNKAQDIIDK-NNALKAITMGYHDLDNEVEDMFATTELLQEE------YD 53
Query: 60 RAYRASLDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
+A L++ L LDQ+E+ LL GP+D A + + G+ G + WA LL MY
Sbjct: 54 EDMKAELEMDVLAFNDKLDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMY 113
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
R+ ++ G++ VD G+KS T+ + A+GYL E G H L+ + S
Sbjct: 114 QRYCEQNGFKVETVDYLPGDEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGR 173
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ A DV+P F +++I+ +D+ F + G+ + + A I H PTGI
Sbjct: 174 RHTSFASCDVIPDFNNNEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIV 233
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
V + ER+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY
Sbjct: 234 VNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAQEMAEIRGEQKEIGWGSQIRSYVFHPY 293
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+V+D +T + ++V+DG+I PFIEA++ +
Sbjct: 294 SMVKDHRTNEETGKVDAVMDGDIGPFIEAYLRQQ 327
>gi|194468150|ref|ZP_03074136.1| peptide chain release factor 2 [Lactobacillus reuteri 100-23]
gi|194453003|gb|EDX41901.1| peptide chain release factor 2 [Lactobacillus reuteri 100-23]
Length = 332
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 163/326 (50%), Gaps = 9/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ +V+ + + + +LR + + + +L +E D +R + S
Sbjct: 5 DFWNDNEQAQKVIAENNILKEKRDTFVNLRDQIGDLETSIELLTVEPDDD--LQRDFEVS 62
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
K L+QY +++LL G D + A + I G+ G + W E LL MYVRW ++ G+
Sbjct: 63 FTKTQKALEQYRLTQLLDGEYDAKNAILEIHPGAGGTEAQDWGEMLLRMYVRWGEQHGFS 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
G+KS T+ + AFGYL E G H L+ + + + A VDV
Sbjct: 123 VETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ S ++ I DL F S G+ + + A I HIPTGI S ER+
Sbjct: 183 MPE-LDDSVEVDIDPSDLRVDTFRSSGAGGQHINKIESAVRITHIPTGIVTSSQAERSQL 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N++ A+N LK+KL + E+ + I+ E + W + R YV HPY LV+D +TG
Sbjct: 242 QNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWGSQIRSYVFHPYTLVKDNRTGY 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG++ PFI+A + + S
Sbjct: 302 ETHNGQAVMDGDLDPFIDAFLQWKLS 327
>gi|357421204|ref|YP_004928653.1| peptide chain release factor 2 [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803714|gb|AER40828.1| peptide chain release factor 2 [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 363
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 13/326 (3%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+ N N W + K ++ +K +S+K + +L+ EE ++I L++ E ++ K
Sbjct: 39 ISNPNFWKNSKKESKNFIKRFNSMKTCMQNFFELKNSLEELEIIFSLSKEENLE----KE 94
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ KLLD E+ L + D A + I +G+ G W L+ MY WA+K
Sbjct: 95 LKIQFIKTKKLLDDIELKNLFQDNEDYYNAILQISSGAGGTESCDWTSMLMRMYTMWAEK 154
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+ Y + + G+K+ T+EF YAFGYL GE G H LI F N S H +
Sbjct: 155 KKYSVKNIHLIHGDITGIKTVTLEFNGIYAFGYLKGENGVHRLIRISPFDNNSKRH-TSF 213
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
+ V V PL ++ ++++ D+ F S G+ + + ++HIPTGI +++
Sbjct: 214 SSVYVYPL-VDKKVEVEVKSSDIHWETFRSSGAGGQNVNKVETGVRLRHIPTGIVIENTE 272
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
R+ N+ KAL LK++L I ++ + I+ E W + R Y+ HPYKLV+D
Sbjct: 273 SRSQIQNRQKALQLLKSRLFEIELKKRNERKNKIESEKKKIEWGSQIRNYIMHPYKLVKD 332
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
++TG + + NSV++G I F++ +
Sbjct: 333 LRTGYETTNINSVMNGEIDIFLKKFL 358
>gi|373457567|ref|ZP_09549334.1| Peptide chain release factor 2 [Caldithrix abyssi DSM 13497]
gi|371719231|gb|EHO41002.1| Peptide chain release factor 2 [Caldithrix abyssi DSM 13497]
Length = 367
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 166/322 (51%), Gaps = 13/322 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAK-LIAQLAE--MEAIDYGLFKRAYR 63
W+D K+ +VL ++ + V+A + + EEAK LI LAE EA+ L +
Sbjct: 44 FWNDQEKAQKVLKQINRHKEWVDAWQSVNNLLEEAKILIEMLAEDESEALKDELVSHFKK 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++ L E ++L G +D + A +TI G+ G + WA L+ MY+R+A+++G+
Sbjct: 104 MEKEINAL----EFKRMLSGRDDPKNAILTIHPGAGGTESQDWASMLMRMYLRFAERQGF 159
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D + G+KS TIE + YA+GYL E G H L+ + + + A V
Sbjct: 160 ETEIMDYQPGEEAGIKSVTIEVKGNYAYGYLKAENGVHRLVRISPFDANKRRHTSFASVF 219
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P ++ + D++I+ DL + + G+ + A I H+PTGI VQ ER+
Sbjct: 220 VIPE-IDENIDVEINPSDLRIDTYRASGAGGQHVNKTDSAIRITHLPTGIVVQCQNERSQ 278
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK AL L A+L + E+ ++ + W + R YV HPY +V+D +T
Sbjct: 279 HKNKANALKILAARLYQLKLEEQLAKKKEYEESKRDIAWGSQIRSYVFHPYNMVKDHRTN 338
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
+ + V+DG+I PFIE ++
Sbjct: 339 YETSNVQQVMDGDIYPFIEKYL 360
>gi|300087667|ref|YP_003758189.1| peptide chain release factor 2 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527400|gb|ADJ25868.1| peptide chain release factor 2 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 327
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 167/330 (50%), Gaps = 14/330 (4%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-DYGLFK 59
M+ W+D S +V+ +L K V + L + + +LAE++A+ D + +
Sbjct: 1 MITIDGFWEDSDNSQKVMRRLTGLKKTVEQWRSLERR------LNELAELDALGDPEMAQ 54
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ VS LD+ E G D A ++I AG+ G+ + WAE LL MYV+W +
Sbjct: 55 DVDAETEAVSDELDRLEFELSYSGEYDERNALLSIHAGAGGVESQDWAEMLLAMYVKWGE 114
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
+ Y +++ G+KS T EF YA+G L E G H LI + +
Sbjct: 115 RRDYDVEILETSAGDEAGIKSVTAEFRGRYAYGNLRSEHGVHRLIRLSPFDSDHARHTSF 174
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A V+V+P +E +++I+ +D+ F + G+ A + H P+GI V +
Sbjct: 175 ALVEVMP-EVEEDAEVEINPDDIKLEAFRASGAGGQNVQKVSSAVRLTHTPSGIVVTAQT 233
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N+ A++ L+A+LL + + + +K E I N W + R YV HPYK+V+D
Sbjct: 234 ERSQHQNREVAMSLLRARLLQRKIAEQEAEKARLKGERISNEWGSQIRSYVLHPYKMVKD 293
Query: 295 VKTGIQLPDFNSVL-DGNIKPFIEAHINSR 323
+TG++ + +VL +GNI+ FIEA++ +
Sbjct: 294 HRTGMETGNTQAVLEEGNIEMFIEAYLKGQ 323
>gi|405979658|ref|ZP_11038001.1| peptide chain release factor 2 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392074|gb|EJZ87135.1| peptide chain release factor 2 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 374
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 173/339 (51%), Gaps = 34/339 (10%)
Query: 6 NLWDDPTKSNEVLVKLADS-------LKVVNALKDLR----YKAEEAKLIAQLAEMEAID 54
+LWDDP+ + EV L+ K+V+ + DL E+ + A++ E D
Sbjct: 43 DLWDDPSHAQEVTSALSHRQSELDRVTKMVDRIDDLEAMVEMAGEDPEESAEILEEADGD 102
Query: 55 YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
K D+S L E+ LL G D A +TI++G+ G+ +AE LL MY
Sbjct: 103 LVTLK------ADISDL----EIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMY 152
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
+RWA++ GY +V+D + G+KSAT E + YA+G LS E G H L+ +
Sbjct: 153 LRWAERHGYPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGR 212
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + A V+V+PL +E++ ++I + +L +F S G+ + A + HIPTGI
Sbjct: 213 RQTSFAAVEVIPL-IESTDHIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIV 271
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVS 286
V E++ N+ AL L+++LLV+ E+ + K+E ++ W + R YV
Sbjct: 272 VSMQDEKSQIQNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVL 327
Query: 287 HPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
PY +V+D++T + +V DG+I FI A I R++
Sbjct: 328 QPYTMVKDLRTQFESGSPQNVFDGDIDGFINAGIRWRKN 366
>gi|297618035|ref|YP_003703194.1| hypothetical protein Slip_1875 [Syntrophothermus lipocalidus DSM
12680]
gi|297145872|gb|ADI02629.1| hypothetical protein Slip_1875 [Syntrophothermus lipocalidus DSM
12680]
Length = 371
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 174/322 (54%), Gaps = 7/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ +V+ +++ + V++ + L + E+ + +LAE E + L++ A
Sbjct: 45 FWDDNQEAQKVVKEMSGLKERVDSYESLVREIEDISALLELAEAEEDEE-LYREAAAELA 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ +YE+S + +G +D A V++ AG+ G + W E LL MY RWA+ GY
Sbjct: 104 RLNRRFREYELSIMFKGEHDDSNAIVSLHAGAGGTDAQDWVEMLLRMYTRWAEDNGYEVD 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KS T+ + +YA+G + E G H LI + S + A V V+P
Sbjct: 164 IMDYLPGEEAGIKSVTLLIKGKYAYGKMRAEAGVHRLIRVSPFDASGRRHTSFALVSVLP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ ++ IS +DL F + G+ + A I H+P+GI VQ ER+ +AN
Sbjct: 224 -EIQDDVEVTISSDDLRIDTFRAGGAGGQHVNKTDSAVRITHLPSGIVVQCQNERSQYAN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K+ A+ L+AKL + + ++ +K E W + R YV +P+ LV+D +TG+++
Sbjct: 283 KLAAMKILRAKLYELKQREQEESLQKLKGEYKEIAWGNQIRTYVLNPFSLVKDHRTGLEV 342
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ N+VLDG+I FI A++ +
Sbjct: 343 GNVNAVLDGDINDFITAYLGQK 364
>gi|314933063|ref|ZP_07840429.1| peptide chain release factor 2 [Staphylococcus caprae C87]
gi|313654382|gb|EFS18138.1| peptide chain release factor 2 [Staphylococcus caprae C87]
Length = 333
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 161/325 (49%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D +K+ E++ K +VN +DL + ++ +L + E D + +
Sbjct: 1 MMADPDFWNDQSKAQEIIDKNNALKSIVNGYRDLANEVDDMSATRELLQ-EEYDEDMKEE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQ+E+ LL GP+D A + G+ G + WA LL MY R+ ++
Sbjct: 60 LESDVIQFKDKMDQFELQLLLDGPHDANNAIFELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G+ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFNVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL ++ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQQKLDEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG+I PFIEA++
Sbjct: 300 RTNEETGKVDAVMDGDIGPFIEAYL 324
>gi|449015961|dbj|BAM79363.1| chloroplast peptide chain release factor RF-2 [Cyanidioschyzon
merolae strain 10D]
Length = 526
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 134/256 (52%), Gaps = 16/256 (6%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW--------ADKEGY 123
L +E+ +L G D GA VT++AG+ G + WAE LL MY RW A + G
Sbjct: 234 LGSFELERLFSGQYDRFGARVTVQAGAGGTDAQDWAEILLRMYTRWCERKFGNAASESGG 293
Query: 124 RGRVV---DKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+VV D + G+KSA +E YA+GYL E G H L+ N + + A
Sbjct: 294 TSKVVRVSDLSPGETAGIKSAVLEVNAPYAYGYLRWEKGTHRLVRQSPFNADAKRQTSFA 353
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ + +LQI D DL S G+ + + A I HIPTG++V+ E
Sbjct: 354 GVEVLPILEDEEEELQIPDSDLEITTMRSGGSGGQNVNKVETAVRIVHIPTGVSVRCSSE 413
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ K + LKAKLLVI EQ S I+ EA+ W ++ R YV HPYKLV+D+
Sbjct: 414 RSQSQNRTKGMQILKAKLLVIREEQRSSRWEEIRGEAVEAAWGQQIRNYVLHPYKLVKDL 473
Query: 296 KTGIQLPDFNSVLDGN 311
+ G + + + LDG
Sbjct: 474 RNGWETGNVSDFLDGG 489
>gi|392963551|ref|ZP_10328977.1| Peptide chain release factor 2 [Pelosinus fermentans DSM 17108]
gi|421077424|ref|ZP_15538395.1| Peptide chain release factor 2 [Pelosinus fermentans JBW45]
gi|392451375|gb|EIW28369.1| Peptide chain release factor 2 [Pelosinus fermentans DSM 17108]
gi|392524812|gb|EIW47967.1| Peptide chain release factor 2 [Pelosinus fermentans JBW45]
Length = 327
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 165/321 (51%), Gaps = 11/321 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP K+ +V +L V + L E+ L+ Q+ ME D ++ A
Sbjct: 6 FWDDPDKAQKVAQELNVLKDGVAQFEQLSTAYEDLSLLWQMG-MEEKDESIYPEVLEAVD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++K +++ E++ +L G +D A +T+ AG+ G + WA+ LL MYVRWA+K GY+
Sbjct: 65 KMTKDIERLEVALMLSGEHDGSNAILTLHAGAGGTEAQDWAQMLLRMYVRWAEKNGYKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKSATI A+GYL E G H L+ + S + A VDV+P
Sbjct: 125 TMDFLAGDEAGVKSATILVSGLNAYGYLKSEKGVHRLVRISPFDASGRRHTSFAAVDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ + D+ I+ D+ + + G+ + A + H+PTG+ VQ +R+ N
Sbjct: 185 E-IDDNVDIDINMADVRVDTYRASGAGGQHINKTDSAVRMTHVPTGVVVQCQTQRSQIKN 243
Query: 242 KMKALNRLKAKL--LVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
+ + + L+AKL L ++ + N +AI W + R YV HPY +V+D +T
Sbjct: 244 REQCMKMLRAKLYELERQKQENIKNELGGDYQAIE--WGSQIRSYVFHPYNMVKDHRTNA 301
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ + ++ +DG++ FIEA++
Sbjct: 302 ETGNVHAAMDGDLGLFIEAYL 322
>gi|421052306|ref|ZP_15515297.1| peptide chain release factor 2 [Pelosinus fermentans B4]
gi|421069109|ref|ZP_15530281.1| Peptide chain release factor 2 [Pelosinus fermentans A11]
gi|392443409|gb|EIW20950.1| peptide chain release factor 2 [Pelosinus fermentans B4]
gi|392450129|gb|EIW27182.1| Peptide chain release factor 2 [Pelosinus fermentans A11]
Length = 327
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 165/321 (51%), Gaps = 11/321 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP K+ +V +L V + L E+ L+ Q+ ME D ++ A
Sbjct: 6 FWDDPDKAQKVAQELNVLKDGVAQFEQLSTAYEDLSLLWQMG-MEEKDESIYPEVLEAVD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++K +++ E++ +L G +D A +T+ AG+ G + WA+ LL MYVRWA+K GY+
Sbjct: 65 KMTKDIERLEVALMLSGEHDGSNAILTLHAGAGGTEAQDWAQMLLRMYVRWAEKNGYKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKSATI A+GYL E G H L+ + S + A VDV+P
Sbjct: 125 TMDFLAGDEAGVKSATILVSGINAYGYLKSEKGVHRLVRISPFDASGRRHTSFAAVDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ + D+ I+ D+ + + G+ + A + H+PTG+ VQ +R+ N
Sbjct: 185 E-IDDNVDIDINMADVRVDTYRASGAGGQHINKTDSAVRMTHVPTGVVVQCQTQRSQIKN 243
Query: 242 KMKALNRLKAKL--LVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
+ + + L+AKL L ++ + N +AI W + R YV HPY +V+D +T
Sbjct: 244 REQCMKMLRAKLYELERQKQENIKNELGGDYQAIE--WGSQIRSYVFHPYNMVKDHRTNA 301
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ + ++ +DG++ FIEA++
Sbjct: 302 ETGNVHAAMDGDLGLFIEAYL 322
>gi|442805591|ref|YP_007373740.1| peptide chain release factor 2 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741441|gb|AGC69130.1| peptide chain release factor 2 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 339
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 160/325 (49%), Gaps = 9/325 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD S ++L + + ++ L+ E+ + +LA +E D +F
Sbjct: 17 FWDDIENSQKILQRSKNLRDKLDGFNKLKTDCEDLLTLVELA-LEEKDESVFDEVESNFK 75
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++ ++ LL+G D A T+ AG+ G W + LL MY RWA+ Y R
Sbjct: 76 EIKSRFEKLKLQTLLKGEYDKNDAIFTLHAGAGGTEAMDWVQMLLRMYTRWAENNNYETR 135
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KS T+E + E A+G+L E G H L+ + S + A ++V+P
Sbjct: 136 ILDLLEGEEAGIKSVTVEVKGENAYGFLKSEKGVHRLVRISPFDASGRRHTSFASMEVLP 195
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ + S ++ I ED+ +F + G+ + A + HIPTGI V ER+ N
Sbjct: 196 V-MNDSDEIHIDPEDIKMDVFRASGAGGQHVNKTSSAVRLTHIPTGIVVTCQNERSQHQN 254
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ L AKLL + + ++ +K E + W + R Y+ PY LV+D +TG +
Sbjct: 255 RETAMKMLYAKLLELKEREKQQKINELKGEQMDIAWGSQIRSYIFCPYTLVKDHRTGYEE 314
Query: 302 PDFNSVLDGNIKPFIEAHI--NSRR 324
+ V+DG I FI A++ N+R+
Sbjct: 315 ANVQKVMDGEIDEFISAYLKWNARK 339
>gi|295109041|emb|CBL22994.1| bacterial peptide chain release factor 2 (bRF-2) [Ruminococcus
obeum A2-162]
Length = 334
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 164/331 (49%), Gaps = 29/331 (8%)
Query: 6 NLWDDPTKSNEVLVKLA---DSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRA 61
+ WDD S + + +L D +++ ++L+ +Q+ +ME I+ G +
Sbjct: 5 DFWDDAEVSQKKMKELKSMKDDMEIYHSLE------------SQMEDMETMIEMGYEEND 52
Query: 62 YRASLDVSKLLDQYE-------MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
++ ++LD++E + LL G D E A + + AG+ G W L MY
Sbjct: 53 PEIIPEIQEMLDEFEKNFDSIRVKTLLSGEYDSENAIIKLNAGAGGTEACDWCGMLYRMY 112
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
RW D++G+ V+D G+KS T + E A+GYL E G H L+ N +
Sbjct: 113 SRWVDRKGFTMEVLDYLDGDEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGK 172
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + DV+P ++ D++I+D+D+ + S G+ + A I H PTGI
Sbjct: 173 RQTSFVSCDVMP-DIKKDLDVEINDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIV 231
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
VQ ER+ NK KA+ LKAKL ++ ++ + +S I+ E W + R YV PY
Sbjct: 232 VQCQNERSQHMNKDKAMQMLKAKLFLLKQQEAEAKLSGIRGEVTDIGWGNQIRSYVMQPY 291
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+V+D +T + + ++VLDG I PFI A++
Sbjct: 292 TMVKDHRTSEETGNVDAVLDGEIDPFINAYL 322
>gi|118444993|ref|YP_878978.1| peptide chain release factor 2 [Clostridium novyi NT]
gi|118135449|gb|ABK62493.1| peptide chain release factor 2 [Clostridium novyi NT]
Length = 337
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 6/255 (2%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++D +++ LL G D A VT+ +G+ G + W E LL MY RWA+K GY+
Sbjct: 76 EIESIIDNFKVEILLSGEYDKNNAIVTLHSGAGGTDAQDWTEMLLRMYTRWAEKRGYKVD 135
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KSA ++ E+A+GYL E G H L+ N + + + A ++V+P
Sbjct: 136 VLDILPGDEAGIKSANLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVIP 195
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L+ + D++I +DL + + G+ + A I HIPTGI VQS ER+ F N
Sbjct: 196 E-LKENQDIEIKADDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQSERSQFQN 254
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A++ LK+KL+ + + + + W + R YV PY +V+D +T ++
Sbjct: 255 KDTAMSMLKSKLVELKERAHKEKIEDLSGDLKEIGWGSQIRSYVFQPYTMVKDHRTNTEM 314
Query: 302 PDFNSVLDGNIKPFI 316
+ ++V+DG+I FI
Sbjct: 315 GNVDAVMDGDIDIFI 329
>gi|418102471|ref|ZP_12739547.1| peptide chain release factor 2 [Streptococcus pneumoniae NP070]
gi|419475148|ref|ZP_14014989.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14688]
gi|419486258|ref|ZP_14026025.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44128]
gi|353776637|gb|EHD57112.1| peptide chain release factor 2 [Streptococcus pneumoniae NP070]
gi|379561486|gb|EHZ26503.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14688]
gi|379589167|gb|EHZ54007.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44128]
Length = 325
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 172/329 (52%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -AELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|307708908|ref|ZP_07645368.1| peptide chain release factor 2 [Streptococcus mitis SK564]
gi|307620244|gb|EFN99360.1| peptide chain release factor 2 [Streptococcus mitis SK564]
Length = 325
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|357112579|ref|XP_003558086.1| PREDICTED: peptide chain release factor 2-like [Brachypodium
distachyon]
Length = 465
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 164/318 (51%), Gaps = 10/318 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V + + + + ++ + E + +LA E D L + RA
Sbjct: 136 DLWEDPVFAGKVSREQGELMGKIKSVNQFEQELMEHIDMLRLAREEG-DNELETESMRAL 194
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ GI WA ++NMY WA + GY
Sbjct: 195 ADMRRNAKEKELNALLSGDNDSYPCFIEVQAGAGGIESMDWAAMVMNMYRSWAQRRGYAV 254
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + +YAFGY E G H L+ F +G H + A V V
Sbjct: 255 TVVEEMPGEVAGIKRATIKVDGDYAFGYAKSEIGVHRLVRISPFDSGKRRH-TSFAAVAV 313
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ + S QI+D DL F S G+ + + A I HIPTG ER+
Sbjct: 314 IPILGDASSRYQINDSDLRIERFRSGGPGGQHANTTESAVRIVHIPTGTTATCQNERSQH 373
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+++L + + Q N + + ++ W + R YV HPY++V+D++T
Sbjct: 374 MNKASAMAVLQSRLDQLEITRQAQMNAEHTQSLSEIS-WGNQIRSYVLHPYRMVKDLRTN 432
Query: 299 IQLPDFNSVLDGNIKPFI 316
++ D +SVL+G++ FI
Sbjct: 433 YEVSDPDSVLEGDLDDFI 450
>gi|420219569|ref|ZP_14724584.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04008]
gi|394288827|gb|EJE32727.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04008]
Length = 333
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLLGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +++D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMIKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA++ S
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYLRKEMDS 330
>gi|383938432|ref|ZP_09991643.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae
SK674]
gi|383714641|gb|EID70636.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae
SK674]
Length = 329
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 172/329 (52%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -AELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|417849938|ref|ZP_12495853.1| peptide chain release factor 2 [Streptococcus mitis SK1080]
gi|339455271|gb|EGP67878.1| peptide chain release factor 2 [Streptococcus mitis SK1080]
Length = 329
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELV--AQ 64
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 65 LAELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|115452569|ref|NP_001049885.1| Os03g0305700 [Oryza sativa Japonica Group]
gi|108707729|gb|ABF95524.1| peptide chain release factor 2 family protein, expressed [Oryza
sativa Japonica Group]
gi|113548356|dbj|BAF11799.1| Os03g0305700 [Oryza sativa Japonica Group]
gi|215707188|dbj|BAG93648.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 468
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 10/318 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V + + + + ++ + E + +LA E D L RA
Sbjct: 142 DLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLAR-EEDDNELETETMRAL 200
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 201 AEMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYSSWAQRRGYTV 260
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 261 SIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 319
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP+ + S QI D DL F S G+ + + A I HIPTGI ER+
Sbjct: 320 VPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGITATCQNERSQH 379
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+++L + + Q N + + ++ W + R YV HPY++V+D++T
Sbjct: 380 MNKASAMAVLQSRLDQLEIARQAQMNADHTQSLSEIS-WGNQIRSYVLHPYRMVKDLRTN 438
Query: 299 IQLPDFNSVLDGNIKPFI 316
++ D +SVL+G++ FI
Sbjct: 439 YEVSDPDSVLNGDLDDFI 456
>gi|242242124|ref|ZP_04796569.1| peptide chain release factor 2 [Staphylococcus epidermidis W23144]
gi|242234437|gb|EES36749.1| peptide chain release factor 2 [Staphylococcus epidermidis W23144]
Length = 332
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 157/320 (49%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +V+ L ++ +L + E D + K
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQ-EEYDEDMKKELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWAGMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
++V+DG I PFIEA++
Sbjct: 304 TGKVDAVMDGEIGPFIEAYL 323
>gi|242041179|ref|XP_002467984.1| hypothetical protein SORBIDRAFT_01g037550 [Sorghum bicolor]
gi|241921838|gb|EER94982.1| hypothetical protein SORBIDRAFT_01g037550 [Sorghum bicolor]
Length = 467
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 166/324 (51%), Gaps = 10/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ + E + +LA E D L + RA
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLAREEN-DNELEMESMRAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 197 ADMRRSAKEKELNALLSGDNDSCPCFIEVQAGAGGTESMDWAAMVMNMYRSWAQRRGYTV 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMPGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ + + QI D DL F S G+ + + A I HIPTGI+ ER+
Sbjct: 316 IPILGDAASRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGISATCQNERSQH 375
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+++L + + Q N + ++ W + R YV HPY++V+D++T
Sbjct: 376 MNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEIS-WGNQIRSYVLHPYRMVKDLRTN 434
Query: 299 IQLPDFNSVLDGNIKPFIEAHINS 322
++ D +SVL+G+I FI +++S
Sbjct: 435 YEVSDPDSVLEGDIDDFILNYLSS 458
>gi|256824891|ref|YP_003148851.1| peptide chain release factor 2 [Kytococcus sedentarius DSM 20547]
gi|256688284|gb|ACV06086.1| bacterial peptide chain release factor 2 (bRF-2) [Kytococcus
sedentarius DSM 20547]
Length = 370
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 170/330 (51%), Gaps = 14/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP +V ++ V ++ + + ++ +++ ++ E D A +
Sbjct: 43 DLWDDPENGQKVSAAMSRVRGEVERIESMDSRIDDLEVLVEMGTEEG-DAETLAEATKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +++ E+ LL G D A +TI+AG+ G+ +AE L+ MY+RWA++ Y
Sbjct: 102 AAIQAAVEKLEVRTLLSGEYDEREAVITIRAGAGGVDAADFAEMLMRMYLRWAERHEYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E YA+G L E G H L+ + + + A V+VV
Sbjct: 162 KVLDTSYAEEAGLKSVTFEVNVPYAYGNLVVEGGTHRLVRISPYDNQGRRQTSFAAVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + ++ +F S G+ + A + HIPTGI V E++
Sbjct: 222 PV-IEQTDSIEIPENEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL L+++LL+ Q + + ++E +I W + R YV HPY++V+D++T
Sbjct: 281 NRAAALRVLQSRLLL----QRKAEEAAERKELAGDIKASWGDQMRSYVLHPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + SV DG+I FIEA I +R +
Sbjct: 337 EHEVGNTQSVFDGDIDGFIEAGIRWKRGQE 366
>gi|418411279|ref|ZP_12984547.1| peptide chain release factor 2 [Staphylococcus epidermidis
BVS058A4]
gi|410892823|gb|EKS40614.1| peptide chain release factor 2 [Staphylococcus epidermidis
BVS058A4]
Length = 332
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
++V+DG I PFIEA++
Sbjct: 304 TGKVDAVMDGEIGPFIEAYL 323
>gi|359772386|ref|ZP_09275815.1| peptide chain release factor 2 [Gordonia effusa NBRC 100432]
gi|359310486|dbj|GAB18593.1| peptide chain release factor 2 [Gordonia effusa NBRC 100432]
Length = 371
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 171/327 (52%), Gaps = 13/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK----RA 61
+LW+D + +V +L+ + + + +LR + ++ + +LA+ E D A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLDDLPVHYELADAEEGDDRTAAIADADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RASL ++ E+ +L G D A V I++G+ GI WA+ L+ MY+RWA++
Sbjct: 103 ERASLRAD--IEAMEVKTMLAGEYDPRDALVNIRSGAGGIDAADWAQMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 161 GYGVEVYDTSYAEEAGIKSATFTVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ ++T+ + I++ DL ++ S G+ + A + HIPTGI V E+
Sbjct: 221 VEVLPV-VDTTDHIDINENDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 279
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++
Sbjct: 280 SQLQNKAAAMRVLQAKLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T ++ + +VLDG + FIEA I R
Sbjct: 339 TNVEDNNPTNVLDGALDKFIEAGIRWR 365
>gi|333991485|ref|YP_004524099.1| peptide chain release factor 2 [Mycobacterium sp. JDM601]
gi|333487453|gb|AEF36845.1| peptide chain release factor 2 PrfB [Mycobacterium sp. JDM601]
Length = 371
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 175/332 (52%), Gaps = 11/332 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ V +L+ + + ++ LR + ++ ++ +LA E +A +
Sbjct: 43 NLWDDQTRAQRVTSELSHAQGELRRVEGLRSRLDDLPVLYELAAEEEGQAAADAQAEADA 102
Query: 66 LDVSKLLD--QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
VS D E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELVSLRADIEAMEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHNY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT +A+G LS E G H L+ F N S + + A V
Sbjct: 163 GVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V E++
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVAAMRVLQAKLLERKRSEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ + +VLDG+I F+EA I R S D D
Sbjct: 340 EYEVGNPAAVLDGDIDGFLEAGIRWRNSPDGD 371
>gi|374709249|ref|ZP_09713683.1| peptide chain release factor 2 [Sporolactobacillus inulinus CASD]
Length = 324
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 167/320 (52%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +V+ + + V++L DL+ K E+ ++ +L + E D L +
Sbjct: 4 FWDDNEKAQKVIDESNELKGKVDSLTDLQNKFEDLQVAYELVKEEN-DADLKAELEESLG 62
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++YE LL P+D A + + G+ G + WA LL MY RWA+++G+
Sbjct: 63 EARDAFNRYETRLLLSAPHDRNNAILELHPGAGGTEAQDWASMLLRMYTRWAERKGFAVE 122
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D GVKS T+ + A+GYL E G H L+ F H + ++C +VV
Sbjct: 123 TLDYLPGDEAGVKSVTLLIKGTDAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EVV 181
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ ++++ EDL +F S G+ + A + H+PTGI V ER+ F
Sbjct: 182 PE-LDDDIEIEVRPEDLRVDVFRSSGAGGQHINKTSSAVRMTHLPTGIVVSCQSERSQFQ 240
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LK++L + E+ + ++ + E W + R YV HPY +V+D +T ++
Sbjct: 241 NRDQAMKMLKSRLFQLEEEKKEAEMAALHGEQKEIGWGSQIRSYVFHPYSMVKDHRTNVE 300
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + + V+DG+I PFI+A++
Sbjct: 301 IGNVDRVMDGDIDPFIDAYL 320
>gi|125543555|gb|EAY89694.1| hypothetical protein OsI_11230 [Oryza sativa Indica Group]
Length = 468
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 10/318 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V + + + + ++ + E + +LA E D L RA
Sbjct: 142 DLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLAR-EEDDNELETETMRAL 200
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 201 AEMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYSSWAQRRGYTV 260
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 261 SIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 319
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP+ + S QI D DL F S G+ + + A I HIPTGI ER+
Sbjct: 320 VPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGITATCQNERSQH 379
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+++L + + Q N + + ++ W + R YV HPY++V+D++T
Sbjct: 380 MNKASAMAVLQSRLDQLEIARQAQMNADHTQSLSEIS-WGNQIRSYVLHPYRMVKDLRTN 438
Query: 299 IQLPDFNSVLDGNIKPFI 316
++ D +SVL+G++ FI
Sbjct: 439 YEVSDPDSVLNGDLDDFI 456
>gi|33860740|ref|NP_892301.1| peptide chain release factor 2 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633682|emb|CAE18639.1| peptide chain release factor RF-2 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 373
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 139/250 (55%), Gaps = 6/250 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D E A V+I AG+ G + W E LL MY RW D G + D
Sbjct: 110 LDKWEFQRLLCGEYDKEAAIVSINAGAGGTDAQDWVEILLRMYSRWVDNNGMSLEITDLS 169
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 170 DGEEAGIKSVTFEVNGKYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDQ 228
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
S L I D+DL + S G+ + + A I H+P+GIAV+ ER+ NK KA+
Sbjct: 229 SISLDIPDKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGIAVRCTQERSQLQNKEKAM 288
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LKAKLLVI EQ S +S IK + + W + R YV HPY++V+D++T + D ++
Sbjct: 289 LLLKAKLLVIAKEQRASEISDIKGDIVEAAWGNQIRNYVFHPYQMVKDLRTMKETNDLDA 348
Query: 307 VLDGNIKPFI 316
VL+G + FI
Sbjct: 349 VLNGGLDQFI 358
>gi|363419407|ref|ZP_09307508.1| peptide chain release factor 2 [Rhodococcus pyridinivorans AK37]
gi|359737492|gb|EHK86424.1| peptide chain release factor 2 [Rhodococcus pyridinivorans AK37]
Length = 372
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 172/335 (51%), Gaps = 31/335 (9%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------------AQLAEMEAI 53
LW+D + +V +L+ + + ++ LR + E+ ++ A LA+ EA
Sbjct: 44 LWNDQDHAQKVTSELSHAQGELRRVEGLRQRLEDLPVLYELAEGEEGEARTAALADAEA- 102
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
+ + RA ++ E+ LL G D A V I+AG+ G+ WAE L+ M
Sbjct: 103 ----ERESLRADIEA------MEVRTLLSGEYDQRDALVNIRAGAGGVDAADWAEMLMRM 152
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y+RWADK GY V D + G+KSAT + Y +G LS E G H L+ +
Sbjct: 153 YIRWADKHGYGVEVYDTSYAEEAGIKSATFAVKAPYTYGTLSVEMGTHRLVRISPFDNQG 212
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+ + A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI
Sbjct: 213 RRQTSFAEVEVLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGI 271
Query: 229 AVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHP 288
V E++ NK+ A+ L+AKLL ++ + + +K + + W + R YV HP
Sbjct: 272 VVTCQNEKSQLQNKVAAMRVLQAKLLERKRQEERAEMDALKGDGGSS-WGNQMRSYVLHP 330
Query: 289 YKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
Y++V+D++T ++ + ++VLDG+I F+E+ I R
Sbjct: 331 YQMVKDLRTEYEVNNPSAVLDGDIDGFLESGIRWR 365
>gi|38233352|ref|NP_939119.1| peptide chain release factor 2 [Corynebacterium diphtheriae NCTC
13129]
gi|375292628|ref|YP_005127167.1| peptide chain release factor 2 [Corynebacterium diphtheriae INCA
402]
gi|376289900|ref|YP_005162147.1| peptide chain release factor 2 [Corynebacterium diphtheriae C7
(beta)]
gi|376292796|ref|YP_005164470.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC02]
gi|76363349|sp|Q6NIM2.1|RF2_CORDI RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|38199612|emb|CAE49268.1| peptide chain release factor 2 [Corynebacterium diphtheriae]
gi|371582299|gb|AEX45965.1| peptide chain release factor 2 [Corynebacterium diphtheriae INCA
402]
gi|372103296|gb|AEX66893.1| peptide chain release factor 2 [Corynebacterium diphtheriae C7
(beta)]
gi|372110119|gb|AEX76179.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC02]
Length = 369
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 164/325 (50%), Gaps = 13/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K +
Sbjct: 103 LTADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDH 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D + G+KSAT EY +G LS E GAH L+ + + + A ++
Sbjct: 159 KVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 VLPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 278 IQNKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTN 336
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D VLDG+I +EA I R
Sbjct: 337 YEVNDPQKVLDGDIDGLLEAGIRWR 361
>gi|418415769|ref|ZP_12988972.1| peptide chain release factor 2 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418636886|ref|ZP_13199224.1| peptide chain release factor 2 [Staphylococcus lugdunensis VCU139]
gi|374840447|gb|EHS03941.1| peptide chain release factor 2 [Staphylococcus lugdunensis VCU139]
gi|410873627|gb|EKS21561.1| peptide chain release factor 2 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 333
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 165/329 (50%), Gaps = 18/329 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVN-ALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
N WDD K+ +++ K ++LK + DL + E+ +L + E + +A
Sbjct: 5 NFWDDQNKAQDIIDK-NNALKAITMGYHDLDNEVEDMFATTELLQEE------YDEDMKA 57
Query: 65 SLDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
L++ L LDQ+E+ LL GP+D A + + G+ G + WA LL MY R+ +
Sbjct: 58 ELEMDVLAFNDKLDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCE 117
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
+ G++ VD G+KS T+ + A+GYL E G H L+ + S +
Sbjct: 118 QNGFKVETVDYLPGDEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSF 177
Query: 178 ACVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A DV+P F +++I+ +D+ F + G+ + + A I H PTGI V +
Sbjct: 178 ASCDVIPDFNNNEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQN 237
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 238 ERSQIKNREAAMKMLKSKLYQLKLEEQAQEMAEIRGEQKEIGWGSQIRSYVFHPYSMVKD 297
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T + ++V+DG+I PFIEA++ +
Sbjct: 298 HRTNEETGKVDAVMDGDIGPFIEAYLRQQ 326
>gi|312879986|ref|ZP_07739786.1| bacterial peptide chain release factor 2 (bRF-2) [Aminomonas
paucivorans DSM 12260]
gi|310783277|gb|EFQ23675.1| bacterial peptide chain release factor 2 (bRF-2) [Aminomonas
paucivorans DSM 12260]
Length = 374
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 150/279 (53%), Gaps = 8/279 (2%)
Query: 43 LIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGIC 102
L A LAE E +D L + YR + K L++ ++ LL D A VTI AG+ G+
Sbjct: 81 LAALLAEGEDVD--LEEEFYRRAGAFEKELERRQIFVLLDEEYDRSDAIVTIHAGAGGLD 138
Query: 103 PEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHC 162
+ W E L MY+RW +KEG++ R++D+ + G+KS T E +YA+GYL GE G H
Sbjct: 139 SQDWTEILSRMYLRWVEKEGFKSRILDQLADQEAGIKSITFEVLGDYAYGYLKGEKGVHR 198
Query: 163 LINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKP 217
L+ + + + A V+V+P+ E + D++I EDL F S G+ ++
Sbjct: 199 LVRISPFDAAKRRHTSFASVEVLPVLPEDA-DIEIRPEDLKMDTFRSSGAGGQYVNMTDS 257
Query: 218 AACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIW 277
A I HIPTGI V ER+ N+ AL LK+KL ++ ++ ++ E W
Sbjct: 258 AVRITHIPTGIIVSCQVERSQHMNRATALQVLKSKLFERQLQERQEHLESLQGEKRSIAW 317
Query: 278 QRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFI 316
+ R Y P++LV+D ++G ++ + +VLDG+++ I
Sbjct: 318 GSQIRSYTLQPFQLVKDHRSGCEVGNVAAVLDGDLEELI 356
>gi|227545120|ref|ZP_03975169.1| peptide chain release factor RF2 [Lactobacillus reuteri CF48-3A]
gi|338203931|ref|YP_004650076.1| peptide chain release factor RF2 [Lactobacillus reuteri SD2112]
gi|227184908|gb|EEI64979.1| peptide chain release factor RF2 [Lactobacillus reuteri CF48-3A]
gi|336449171|gb|AEI57786.1| peptide chain release factor RF2 [Lactobacillus reuteri SD2112]
Length = 332
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 9/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ +V+ + + + +LR + + + +L +E D ++ + AS
Sbjct: 5 DFWNDNEQAQKVIAENNILKEKRDTFVNLRDQISDLETSLELLAVEPDDD--LQKDFEAS 62
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K L+QY +++LL G D + A + I G+ G + W E LL MY+RW ++ +
Sbjct: 63 FTNTQKALEQYRLTQLLDGEYDAKNAILEIHPGAGGTEAQDWGEMLLRMYIRWGEQHAFS 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
G+KS T+ + AFGYL E G H L+ + + + A VDV
Sbjct: 123 VETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ S ++ I DL F S G+ + + A I HIPTGI S ER+
Sbjct: 183 MPE-LDDSVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHIPTGIVTSSQAERSQL 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N++ A+N LK+KL + E+ + I+ E + W + R YV HPY LV+D +TG
Sbjct: 242 QNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWGSQIRSYVFHPYTLVKDNRTGY 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG++ PFI+A + + S
Sbjct: 302 ETHNGQAVMDGDLDPFIDAFLQWKLS 327
>gi|376253852|ref|YP_005142311.1| peptide chain release factor 2 [Corynebacterium diphtheriae PW8]
gi|372116936|gb|AEX69406.1| peptide chain release factor 2 [Corynebacterium diphtheriae PW8]
Length = 369
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 164/325 (50%), Gaps = 13/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K +
Sbjct: 103 LTADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDH 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D + G+KSAT EY +G LS E GAH L+ + + + A ++
Sbjct: 159 KVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 VLPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 278 IQNKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTN 336
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D VLDG+I +EA I R
Sbjct: 337 YEVNDPQKVLDGDIDGLLEAGIRWR 361
>gi|375290410|ref|YP_005124950.1| peptide chain release factor 2 [Corynebacterium diphtheriae 241]
gi|376245243|ref|YP_005135482.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC01]
gi|371580081|gb|AEX43748.1| peptide chain release factor 2 [Corynebacterium diphtheriae 241]
gi|372107873|gb|AEX73934.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC01]
Length = 369
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 163/323 (50%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D + A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALVLADEELAE 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 103 LTAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 161 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 221 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 280 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 339 VNDPQKVLDGDIDGLLEAGIRWR 361
>gi|170755895|ref|YP_001779801.1| peptide chain release factor 2 [Clostridium botulinum B1 str. Okra]
gi|429243946|ref|ZP_19207428.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001628]
gi|169121107|gb|ACA44943.1| peptide chain release factor 2 [Clostridium botulinum B1 str. Okra]
gi|428758866|gb|EKX81257.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001628]
Length = 325
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 165/328 (50%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLIKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + +D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEEIDKFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++++P E +++I EDL + + G+ + + A I HIPTGI VQ
Sbjct: 175 SFASIEILPELTE-DQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYL 321
>gi|52082063|ref|YP_080854.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319647929|ref|ZP_08002147.1| peptide chain release factor 2 [Bacillus sp. BT1B_CT2]
gi|404490944|ref|YP_006715050.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423684069|ref|ZP_17658908.1| peptide chain release factor 2 [Bacillus licheniformis WX-02]
gi|52005274|gb|AAU25216.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52349954|gb|AAU42588.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317390270|gb|EFV71079.1| peptide chain release factor 2 [Bacillus sp. BT1B_CT2]
gi|383440843|gb|EID48618.1| peptide chain release factor 2 [Bacillus licheniformis WX-02]
Length = 327
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 164/327 (50%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W D K+ + ++ A++LK VN K L EE ++ L + E D L
Sbjct: 5 DFWGDQQKA-QTIINEANALKDYVNTYKSLSESHEELQMTHDLLK-EDPDQDLQNELVNE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKSLTKQFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F E D++I ED+ + + G+ + A I H+PTG+ V ER+
Sbjct: 182 VMPEFNE-EIDIEIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTGVIVTCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+ LK+KL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 241 IKNRERAMKMLKSKLYQRRIEEQQAQLDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + +V+DG+I FI+A++ S+ S
Sbjct: 301 TEMGNVQAVMDGDIDSFIDAYLRSKLS 327
>gi|358053704|ref|ZP_09147428.1| peptide chain release factor 2 [Staphylococcus simiae CCM 7213]
gi|357256809|gb|EHJ07133.1| peptide chain release factor 2 [Staphylococcus simiae CCM 7213]
Length = 331
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 168/337 (49%), Gaps = 16/337 (4%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME-----AIDY 55
M+ N WDD K+ +++ K VV+ + L+ ++ + +L + E ID
Sbjct: 1 MMSEPNFWDDQNKAQDIIDKNNAIKSVVSGYEQLQNDVDDMEATWELLQEEFDEDMKIDL 60
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
++A +D ++E+ LL GP+D A + + G+ G + WA LL MY
Sbjct: 61 EQKVNQFKAQVD------KFELQLLLDGPHDSNNAILELHPGAGGTESQDWANMLLRMYQ 114
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
R+ +++G++ VVD G+KS T+ + A+GYL E G H L+ + S
Sbjct: 115 RYCEQKGFKVEVVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRR 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 175 HTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
+ ER+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY
Sbjct: 235 NNQNERSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYS 294
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+V+D +T + ++V+DG+I PFIEA++ S++
Sbjct: 295 MVKDHRTNEETGKVDAVMDGDIGPFIEAYLRQEMSTN 331
>gi|395773704|ref|ZP_10454219.1| peptide chain release factor 2 [Streptomyces acidiscabies 84-104]
Length = 368
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V LR + ++ ++ ++A+ E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKADTLRGRIDDLSVLFEMAD-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K L + E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TAVRKALAEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELIETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTDFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA + R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGVRWRKQQE 367
>gi|452973508|gb|EME73330.1| peptide chain release factor 2 [Bacillus sonorensis L12]
Length = 327
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 165/327 (50%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W D K+ + ++ A++LK VN K+L EE ++ L + E D L
Sbjct: 5 DFWGDQQKA-QTIINEANALKEYVNTYKELSESHEELQMTHDLLK-EDPDEDLQNELENE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKSLTKKFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F E D++I ED+ + + G+ + A I H+PTG+ V ER+
Sbjct: 182 VMPEFNE-EIDIEIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTGVIVTCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+ LK+KL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 241 IKNRERAMKMLKSKLYQRRIEEQQAQLDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + +V+DG+I FI+A++ S+ S
Sbjct: 301 TEMGNVQAVMDGDIDSFIDAYLRSKLS 327
>gi|261420549|ref|YP_003254231.1| hypothetical protein GYMC61_3194 [Geobacillus sp. Y412MC61]
gi|297531361|ref|YP_003672636.1| hypothetical protein GC56T3_3133 [Geobacillus sp. C56-T3]
gi|319768218|ref|YP_004133719.1| hypothetical protein [Geobacillus sp. Y412MC52]
gi|261377006|gb|ACX79749.1| hypothetical protein GYMC61_3194 [Geobacillus sp. Y412MC61]
gi|297254613|gb|ADI28059.1| hypothetical protein GC56T3_3133 [Geobacillus sp. C56-T3]
gi|317113084|gb|ADU95576.1| hypothetical protein GYMC52_3223 [Geobacillus sp. Y412MC52]
Length = 367
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA---- 61
N WDD + V+ + VNALKDL EE + + + + Y L K
Sbjct: 45 NFWDDQKAAQAVISE-------VNALKDL---VEEFSSLEERFDNLEVTYELLKEEPDDE 94
Query: 62 YRASL--DVSKLL---DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+A L + KL+ ++E+ LL P D A + + G+ G + WA LL MY R
Sbjct: 95 LQAELVEEAKKLMKDFSEFELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTR 154
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPH 173
WA+K+G++ +D + G+KS T+ + A+GYL E G H L+ F H
Sbjct: 155 WAEKKGFKVETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRH 214
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ ++C +VVP L+ + +++I E+L + S G+ + A I H+PTGI V
Sbjct: 215 TSFVSC-EVVP-ELDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVV 272
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ N+ KA+N LKAKL E+ + ++ ++ E W + R YV HPY
Sbjct: 273 TCQSERSQIKNREKAMNMLKAKLYQKKLEEQQAELAELRGEQKEIGWGNQIRSYVFHPYS 332
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
LV+D +T +++ + +V+DG I FI+A++ ++
Sbjct: 333 LVKDHRTNVEVGNVQAVMDGEIDVFIDAYLRAK 365
>gi|374587319|ref|ZP_09660411.1| bacterial peptide chain release factor 2 (bRF-2) [Leptonema illini
DSM 21528]
gi|373876180|gb|EHQ08174.1| bacterial peptide chain release factor 2 (bRF-2) [Leptonema illini
DSM 21528]
Length = 391
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 167/333 (50%), Gaps = 28/333 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEE-----AKLIAQLAEMEAIDYGLFKR 60
+ WDD ++ E+ + + K +LR + ++ A I +L E E
Sbjct: 56 DFWDDADQAREISRQKSALEKKTEPWVELRREVDDFGDLIALTIDELGEEEGF------- 108
Query: 61 AYRASL--DVSKLLDQY---EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
ASL D +++ +Q+ ++S+ L G +D A VTI +G+ G + WA+ L MY
Sbjct: 109 ---ASLSKDFARMKEQFDGLQLSEALLGEDDGRNALVTISSGAGGTESQDWAQMLYRMYT 165
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFP 172
RW +K GY +D G+KSA++ + E AFGYL GE G H L+ F +
Sbjct: 166 RWFEKRGYDVETLDFQEADEAGIKSASLLVKGENAFGYLKGENGVHRLVRISPFDSNKRR 225
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
H + A V + P L+ S ++ I ++DL + + G+ + A I HIPTGI
Sbjct: 226 H-TSFASVHISPE-LDDSVNVLIEEKDLRVDTYRASGAGGQHVNKTDSAIRITHIPTGIV 283
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
VQ ER+ N+ +A+ LKA+L + + + E W + R YV HPY
Sbjct: 284 VQCQNERSQHKNRDRAMKMLKARLYEVEKAKKEAEAESKAGEKKDVAWGSQIRSYVMHPY 343
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
K+V+D++TG Q D SV++G++ PF+ +++ +
Sbjct: 344 KMVKDLRTGEQTSDVESVMNGDLDPFVISYLKN 376
>gi|387138177|ref|YP_005694156.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|389849923|ref|YP_006352158.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 258]
gi|349734655|gb|AEQ06133.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|388247229|gb|AFK16220.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 258]
Length = 366
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEQTDHIDIPDSEVRMDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG++ F+EA I R
Sbjct: 338 VNDPQKVLDGDLDGFLEAGIRWR 360
>gi|145225030|ref|YP_001135708.1| peptide chain release factor 2 [Mycobacterium gilvum PYR-GCK]
gi|189040001|sp|A4TDE5.1|RF2_MYCGI RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|145217516|gb|ABP46920.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
gilvum PYR-GCK]
Length = 372
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 13/326 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD ++ +V L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 44 LWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYELAAEEE-GAGSSEAFAEADA 102
Query: 67 DVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++KL + E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELAKLREDIAGMEVRTLLSGEYDEREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT YA+G LS E G H L+ F N S + + A V
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQS-RRQTSFADV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVSAMRVLQAKLLERKRLEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +VLDG+I F+EA I R
Sbjct: 340 EYEVGNPAAVLDGDIDGFLEAGIRWR 365
>gi|386739917|ref|YP_006213097.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 31]
gi|384476611|gb|AFH90407.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 31]
Length = 366
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG++ F+EA I R
Sbjct: 338 VNDPQKVLDGDLDGFLEAGIRWR 360
>gi|373471242|ref|ZP_09562304.1| peptide chain release factor 2 [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371760786|gb|EHO49457.1| peptide chain release factor 2 [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 337
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 159/324 (49%), Gaps = 17/324 (5%)
Query: 7 LWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRA 61
WDDP +S +++ +L D+++ N LK E + I L EM E D L
Sbjct: 6 FWDDPKESTKIVREAKQLKDTVEKYNKLK------SEYEDIGVLIEMGYEENDESLIPEI 59
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
+K +D+ +++ LL G D A + + AG+ G W L MY RWA E
Sbjct: 60 EGMLEAFTKEIDELKIATLLTGEYDSSNAIMKLNAGAGGTESCDWCSMLYRMYTRWAAAE 119
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY ++D G+KS T++ A+GYL E G H L+ N + + +
Sbjct: 120 GYSVEILDMLEGDEAGIKSVTLQINGLNAYGYLRSEHGVHRLVRISPFNAAGKRQTSFVS 179
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
D++P +E D+ I+ +DL + S G+ + A I HIPTG+ VQ ER
Sbjct: 180 CDIMP-DIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGVVVQCQNER 238
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ F NK KA+ LKAKL ++ + V +S I+ + W + R YV PY +V+D
Sbjct: 239 SQFQNKDKAMQMLKAKLFLLKQQANVEKLSDIRGDVKDIGWGNQIRSYVMQPYTMVKDHG 298
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI 320
TG + + ++VLDG+I FI A++
Sbjct: 299 TGAESGNVSAVLDGDIDKFIIAYL 322
>gi|282875665|ref|ZP_06284536.1| peptide chain release factor 2 [Staphylococcus epidermidis SK135]
gi|417647622|ref|ZP_12297456.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU144]
gi|417656376|ref|ZP_12306063.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU028]
gi|417658298|ref|ZP_12307932.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU045]
gi|417910255|ref|ZP_12553982.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU037]
gi|417911683|ref|ZP_12555383.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU105]
gi|417914181|ref|ZP_12557834.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU109]
gi|418605505|ref|ZP_13168828.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU041]
gi|418608459|ref|ZP_13171654.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU057]
gi|418608727|ref|ZP_13171909.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU065]
gi|418611194|ref|ZP_13174289.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU117]
gi|418617972|ref|ZP_13180856.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU120]
gi|418625674|ref|ZP_13188316.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU126]
gi|418665846|ref|ZP_13227283.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU081]
gi|419768181|ref|ZP_14294313.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-250]
gi|419771088|ref|ZP_14297148.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-K]
gi|420166738|ref|ZP_14673419.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM088]
gi|420171417|ref|ZP_14677959.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM070]
gi|420172084|ref|ZP_14678599.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM067]
gi|420182478|ref|ZP_14688614.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM049]
gi|420187927|ref|ZP_14693942.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM039]
gi|420197770|ref|ZP_14703491.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM020]
gi|420201248|ref|ZP_14706873.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM018]
gi|420208222|ref|ZP_14713692.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM003]
gi|420212399|ref|ZP_14717750.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM001]
gi|420213593|ref|ZP_14718899.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05005]
gi|420216605|ref|ZP_14721809.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05001]
gi|281295692|gb|EFA88215.1| peptide chain release factor 2 [Staphylococcus epidermidis SK135]
gi|329723235|gb|EGG59765.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU144]
gi|329736827|gb|EGG73092.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU028]
gi|329737925|gb|EGG74149.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU045]
gi|341651092|gb|EGS74899.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU037]
gi|341652194|gb|EGS75983.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU105]
gi|341653265|gb|EGS77036.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU109]
gi|374401358|gb|EHQ72432.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU057]
gi|374402269|gb|EHQ73302.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU041]
gi|374407963|gb|EHQ78807.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU081]
gi|374409906|gb|EHQ80675.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU065]
gi|374817035|gb|EHR81225.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU120]
gi|374824089|gb|EHR88071.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU117]
gi|374835191|gb|EHR98814.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU126]
gi|383360392|gb|EID37788.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-250]
gi|383362059|gb|EID39416.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-K]
gi|394233111|gb|EJD78721.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM088]
gi|394238063|gb|EJD83547.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM070]
gi|394243555|gb|EJD88917.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM067]
gi|394250023|gb|EJD95225.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM049]
gi|394255569|gb|EJE00518.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM039]
gi|394265356|gb|EJE10013.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM020]
gi|394273154|gb|EJE17589.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM018]
gi|394279833|gb|EJE24130.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM001]
gi|394282096|gb|EJE26308.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM003]
gi|394285169|gb|EJE29253.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05005]
gi|394291632|gb|EJE35427.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05001]
Length = 333
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +++D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMIKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA++ S
Sbjct: 300 RTNEETGKVDAVMDGEIGPFIEAYLRKEMDS 330
>gi|400535590|ref|ZP_10799126.1| peptide chain release factor 2 [Mycobacterium colombiense CECT
3035]
gi|400330633|gb|EJO88130.1| peptide chain release factor 2 [Mycobacterium colombiense CECT
3035]
Length = 370
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 173/335 (51%), Gaps = 22/335 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-------IDYGLF 58
LWDD ++ V +L+ + + +++LR + ++ ++ +LA E +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRVEELRGRLDDLPVLYELAAEEGEGAADALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGDYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTC 274
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK+ A+ L+AKLL + + + +K E + W + R YV PY++V
Sbjct: 275 QNEKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLQPYQMV 333
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D++T ++ + +VLDG+I F+EA I R D
Sbjct: 334 KDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 368
>gi|242066770|ref|XP_002454674.1| hypothetical protein SORBIDRAFT_04g035390 [Sorghum bicolor]
gi|241934505|gb|EES07650.1| hypothetical protein SORBIDRAFT_04g035390 [Sorghum bicolor]
Length = 467
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 166/324 (51%), Gaps = 10/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ L + E + +LA E D L + RA
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQLEQELIEHIEMLRLAREEN-DNELEMESMRAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + E++ LL ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 197 ADMRISAKEKELNALLSRDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYKSWAQRRGYTV 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMPGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ + S QI D DL F S G+ + + A I HIPTGI+ S ER+
Sbjct: 316 IPILGDASSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGISATSQNERSQH 375
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+++L + + Q N + ++ W + R YV HPY++V+D++T
Sbjct: 376 MNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEIS-WGNQIRSYVLHPYRMVKDLRTN 434
Query: 299 IQLPDFNSVLDGNIKPFIEAHINS 322
++ D +SVL+G++ FI +++S
Sbjct: 435 YEVSDPDSVLEGDLDDFILNYLSS 458
>gi|315445399|ref|YP_004078278.1| peptide chain release factor 2 (bRF-2) [Mycobacterium gilvum Spyr1]
gi|315263702|gb|ADU00444.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
gilvum Spyr1]
Length = 372
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 13/326 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD ++ +V L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 44 LWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYELAAEEE-GAGSSEAFAEADA 102
Query: 67 DVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++KL + E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELAKLREDIAGMEVRTLLSGEYDEREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT YA+G LS E G H L+ F N S + + A V
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQSR-RQTSFADV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVSAMRVLQAKLLERKRLEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +VLDG+I F+EA I R
Sbjct: 340 EYEVGNPAAVLDGDIDGFLEAGIRWR 365
>gi|291531340|emb|CBK96925.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
siraeum 70/3]
Length = 370
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 165/327 (50%), Gaps = 17/327 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL-----FKR 60
+ W+D S ++ K+ + +V + + LR ++ + +LA+ E + L +
Sbjct: 45 DFWNDVENSQKISQKIGEDKNIVQSYEKLRESYDDVMTMLELAQEEDDESMLPEIQELAK 104
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+R L+ KL + LL G D A +T AG+ G + W E L MY WA++
Sbjct: 105 HFRTELESQKL------ATLLSGEFDHNNAILTFHAGAGGTEAQDWVEMLYRMYNHWAEQ 158
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G + V+D + G+KSA+I E A+GYL E G H L+ + S + A
Sbjct: 159 HGMKVTVLDYLDGEEAGIKSASILVEGRNAYGYLKSENGVHRLVRVSPFDSSGRRHTSFA 218
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P E D++IS++++ ++ + G++ + A I HIPTGI E
Sbjct: 219 SVEVMPEINE-DIDIEISEDEIKMDVYRASGAGGQKVNKTSSAVRITHIPTGIVCACQTE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KLL I + + +S IK E + W + R YV PY +V+D
Sbjct: 278 RSQHQNREYAMRMLKSKLLEIKEREHLDKISDIKGEQLQIAWGAQIRSYVFMPYTMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINS 322
+TG ++ + +V+DG++ FI A++ +
Sbjct: 338 RTGYEMGNIGAVMDGDLDGFINAYLKA 364
>gi|418143566|ref|ZP_12780366.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13494]
gi|353809307|gb|EHD89567.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13494]
Length = 325
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIEAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|313888002|ref|ZP_07821680.1| peptide chain release factor 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845957|gb|EFR33340.1| peptide chain release factor 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 371
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 169/331 (51%), Gaps = 15/331 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNA---LKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD + +V+ + + ++ L DL AE+ LIA L E+E DY +
Sbjct: 47 FWDDNESAQKVIRETNSYQRKIDQYDKLIDLITDAED--LIA-LMEIEE-DYSSYSDFQE 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ K +++++ LL G D A ++I AG+ G + WA LL MY R+A+ +G+
Sbjct: 103 LVDEIEKDTAEFKLNTLLNGEYDSHDAILSIHAGAGGTEAQDWASMLLRMYTRYAENKGF 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T++ + A+GYL GE G H L+ F + H + + V
Sbjct: 163 KVETLDLLKEDEAGIKSVTLKISGDNAYGYLKGEKGVHRLVRISPFDSNKRRH-TSFSSV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
DV P ++ +++I DE+L + S G+ + A I HIPTGI VQ ER+
Sbjct: 222 DVFPE-IDDDTEVEIKDEELKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQNERS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ KA+N LKAKL+ + E+ + ++ W + R YV PY +V+D +T
Sbjct: 281 QIQNREKAMNMLKAKLVALAEEEKKEKIEDLQGNYSQIAWGSQIRSYVFQPYTMVKDHRT 340
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ + D V+DG++ FI A++ + + ++
Sbjct: 341 NVDVGDVEKVMDGDLDIFINAYLQDKATGES 371
>gi|429317614|emb|CCP37402.1| peptide chain release factor 2 [Streptococcus pneumoniae SPN034156]
gi|429318507|emb|CBW32341.2| peptide chain release factor 2 [Streptococcus pneumoniae OXC141]
gi|429319156|emb|CCP32395.1| peptide chain release factor 2 [Streptococcus pneumoniae SPN034183]
gi|429320971|emb|CCP34369.1| peptide chain release factor 2 [Streptococcus pneumoniae SPN994039]
gi|429322791|emb|CCP30410.1| peptide chain release factor 2 [Streptococcus pneumoniae SPN994038]
Length = 364
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 44 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 99
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 100 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 157
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 158 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 216
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 217 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 275
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 276 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 336 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 364
>gi|184200580|ref|YP_001854787.1| peptide chain release factor 2 [Kocuria rhizophila DC2201]
gi|183580810|dbj|BAG29281.1| peptide chain release factor 2 [Kocuria rhizophila DC2201]
Length = 372
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 177/327 (54%), Gaps = 16/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ +V +L+ V+ L+ + + ++ +++ +LAE E D + A
Sbjct: 44 DLWDNPDEAQKVTSQLSHKQSKVDRLRKIESRIDDLEVMVELAEDE--DDQETRDASATE 101
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + K L + E+ LL G D A VTI++G+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 LTSIQKALSELEIQTLLAGEYDEREAVVTIRSGAGGVDAADFAEILMRMYLRWAERHGYP 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V
Sbjct: 162 TKVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E+ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 222 IPL-IESDDTVEIPETELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQNEKSQI 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ AL L+++LL++ E+ K+E ++ W + R YV +PY++V+D++
Sbjct: 281 QNRAAALRVLQSRLLLLRQEEA----DAKKKEMAGDVKASWGDQMRSYVLNPYQMVKDLR 336
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T + + +SV DG I FI+ I R
Sbjct: 337 TNYEEGNPSSVFDGGIDSFIDEGIRWR 363
>gi|379714854|ref|YP_005303191.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 316]
gi|377653560|gb|AFB71909.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 316]
Length = 366
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEQTDHIDIPDSEVRMDVYRSSRPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG++ F+EA I R
Sbjct: 338 VNDPQKVLDGDLDGFLEAGIRWR 360
>gi|167750196|ref|ZP_02422323.1| hypothetical protein EUBSIR_01170 [Eubacterium siraeum DSM 15702]
gi|167656758|gb|EDS00888.1| peptide chain release factor 2 [Eubacterium siraeum DSM 15702]
gi|291556130|emb|CBL33247.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
siraeum V10Sc8a]
Length = 370
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 165/327 (50%), Gaps = 17/327 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL-----FKR 60
+ W+D S ++ K+ + +V + + LR ++ + +LA+ E + L +
Sbjct: 45 DFWNDVENSQKISQKIGEDKNIVQSYEKLRESYDDVMTMLELAQEEDDESMLPEIQELAK 104
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+R L+ KL + LL G D A +T AG+ G + W E L MY WA++
Sbjct: 105 HFRTELESQKL------ATLLSGEFDHNNAILTFHAGAGGTEAQDWVEMLYRMYNHWAEQ 158
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G + V+D + G+KSA+I E A+GYL E G H L+ + S + A
Sbjct: 159 HGMKVTVLDYLDGEEAGIKSASILVEGRNAYGYLKSENGVHRLVRVSPFDSSGRRHTSFA 218
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P E D++IS++++ ++ + G++ + A I HIPTGI E
Sbjct: 219 SVEVMPEINE-DIDIEISEDEIKMDVYRASGAGGQKVNKTSSAVRITHIPTGIVCACQTE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KLL I + + +S IK E + W + R YV PY +V+D
Sbjct: 278 RSQHQNREYAMRMLKSKLLEIKEREHLDKISDIKGEQLQIAWGAQIRSYVFMPYTMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINS 322
+TG ++ + +V+DG++ FI A++ +
Sbjct: 338 RTGYEMGNIGAVMDGDLDGFINAYLKA 364
>gi|160941606|ref|ZP_02088937.1| hypothetical protein CLOBOL_06506 [Clostridium bolteae ATCC
BAA-613]
gi|158435500|gb|EDP13267.1| hypothetical protein CLOBOL_06506 [Clostridium bolteae ATCC
BAA-613]
Length = 339
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 158/319 (49%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P +S ++ + + V+ + L + E+ +++ Q+ E D L
Sbjct: 6 FWDEPEQSTRMVRESKNLKDEVDTYRALEQQYEDIQVMIQMG-YEENDSSLIPEIEEMLE 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L+ M LL G D A + + AG+ G W L MY RWA+ +G++
Sbjct: 65 QFKETLENMRMKLLLSGEYDSNNAILRLNAGAGGTESCDWCSILYRMYCRWAESKGFKAH 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KS T++ + E A+GYL E G H L+ N + + + DV+P
Sbjct: 125 VLDFLDGEEAGIKSVTVQIDGENAYGYLRSEHGVHRLVRISPFNSAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D++++ +D+ + S G+ + A I H PTGI V ER+ F N
Sbjct: 185 -NIEEDIDIEVNPDDIRVDTYRSSGAGGQHINKTSSAIRITHFPTGIVVTCQNERSQFQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKLL++ E+ + + I+ + W + R YV PY +V+D +TG +
Sbjct: 244 KEKAMQMLKAKLLMVKQEEQAAKAAGIRGDVKDIGWGSQIRSYVLQPYTMVKDHRTGEES 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDG I FI A++
Sbjct: 304 GNVDAVLDGAIDNFISAYL 322
>gi|392400126|ref|YP_006436726.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis Cp162]
gi|390531204|gb|AFM06933.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis Cp162]
Length = 366
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKAMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG++ F+EA I R
Sbjct: 338 VNDPQKVLDGDLDGFLEAGIRWR 360
>gi|402311418|ref|ZP_10830363.1| peptide chain release factor 2 [Lachnospiraceae bacterium ICM7]
gi|400372700|gb|EJP25640.1| peptide chain release factor 2 [Lachnospiraceae bacterium ICM7]
Length = 337
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 160/324 (49%), Gaps = 17/324 (5%)
Query: 7 LWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRA 61
WDDP +S +++ +L D+++ N LK E + I L EM E D L
Sbjct: 6 FWDDPKESTKIVREAKQLKDTVEKYNKLK------SEYEDIGVLIEMGYEENDESLIPEI 59
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
+K +D+ +++ LL G D A + + AG+ G W L MY RWA E
Sbjct: 60 EGMLEAFTKEIDELKIATLLTGEYDSSNAIMKLNAGAGGTESCDWCSMLYRMYTRWAAAE 119
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY ++D G+KS T++ A+GYL E G H L+ N + + +
Sbjct: 120 GYSVEILDMLEGDEAGIKSVTLQINGLNAYGYLRSEHGVHRLVRISPFNAAGKRQTSFVS 179
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
D++P +E D+ I+ +DL + S G+ + A I HIPTG+ VQ ER
Sbjct: 180 CDIMP-DIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGVVVQCQNER 238
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ F NK +A+ LKAKL ++ + V +S I+ + W + R YV PY +V+D +
Sbjct: 239 SQFQNKDRAMQMLKAKLFMLKQQANVEKLSDIRGDVKDIGWGNQIRSYVMQPYTMVKDHR 298
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI 320
TG + + ++V+DG+I FI A++
Sbjct: 299 TGAESGNVSAVMDGDIDKFIIAYL 322
>gi|385678972|ref|ZP_10052900.1| peptide chain release factor RF-2 [Amycolatopsis sp. ATCC 39116]
Length = 367
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 170/332 (51%), Gaps = 15/332 (4%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N NLWDDP + +V +L+ + + DLR + ++ +++ +LAE E D A
Sbjct: 41 NPNLWDDPEAAQKVTSQLSHRQAELRRVTDLRQRLDDLEVLHELAEAEG-DNASKAEAEG 99
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++K +D E+ LL G D A VTI+A + G+ WAE LL MY+RWA++ GY
Sbjct: 100 ELTRLAKEVDALEVRTLLSGEYDDRNAVVTIRAEAGGVDAADWAEMLLRMYLRWAERHGY 159
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEA 175
V D + G+KSAT + Y +G LS E G H L+ F N SF H
Sbjct: 160 PTDVYDISYAEEAGIKSATFKVAAPYIYGTLSVEQGTHRLVRISPFDNQGRRQTSFAHVE 219
Query: 176 TLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
L V+ V D+++ +F S G+ + A I H+PTGI V E
Sbjct: 220 VLPEVEEVDHVEIPEKDIRVD----VFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNE 275
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK AL L+AKLL+ E+ + + +K + W + R YV HPY++V+D+
Sbjct: 276 KSQLQNKAAALKVLQAKLLLKKKEEERAELDALKDSG--SSWGNQMRNYVLHPYQMVKDL 333
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T ++ + +SVLDG I F+EA I R+ ++
Sbjct: 334 RTEHEVGNPSSVLDGEIDDFLEAGIRWRKQAN 365
>gi|392955454|ref|ZP_10320985.1| peptide chain release factor 2 [Bacillus macauensis ZFHKF-1]
gi|391878381|gb|EIT86970.1| peptide chain release factor 2 [Bacillus macauensis ZFHKF-1]
Length = 326
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 169/327 (51%), Gaps = 11/327 (3%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
N WDD + V+ + A+ LK VN + L + ++ ++ ++ + EA D + K
Sbjct: 3 NPTFWDDQNAAQTVISE-ANGLKDQVNQFETLSNQYDDLEVAHEMLKEEA-DPDMQKELE 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
R +S+ L+ +E+S LL P D A + + G+ G + WA LL MY R+A+++G
Sbjct: 61 RDLKALSEALNSFELSLLLNQPYDQNNAILELHPGAGGTESQDWASMLLRMYTRYAERKG 120
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y+ +D + GVKS T+ + A+GYL E G H L+ F + H + ++C
Sbjct: 121 YKVETLDYLPGEEAGVKSVTLSIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC 180
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
DVVP + ++ + EDL + + G+ + A I HIPT V ER
Sbjct: 181 -DVVP-EINDDTEIDVRTEDLKVDTYRASGAGGQHVNTTDSAVRITHIPTNTVVSCQTER 238
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ LKAKLL E+ + ++ I+ E W + R YV HPY L +D +
Sbjct: 239 SQIKNRDRAMKMLKAKLLQRKIEEQQAELAEIRGEQKEIGWGSQIRSYVFHPYSLAKDHR 298
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T ++ + +V+DG+I+ FI+A++ S+
Sbjct: 299 TNTEMGNVQAVMDGDIESFIDAYLRSK 325
>gi|326491925|dbj|BAJ98187.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 465
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 165/318 (51%), Gaps = 10/318 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V + + + + ++ + E + +LA E D L + RA
Sbjct: 136 DLWEDPVFAGKVSREQGELMGKIKSVNQFEQQLMEHIDMLRLARDEG-DNELETESMRAL 194
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G+ WA ++NMY WA + GYR
Sbjct: 195 ADMRREAKEKELNALLSGDNDPYPCFIEVQAGAGGVESMDWAAMVMNMYKSWAQRRGYRV 254
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 255 TVIEEMPGELAGIKRATIKVDGEYAFGYAKSEIGVHRLVRISPFDSGKRRH-TSFAAVAV 313
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ E+S QI++ DL F S G+ + + A I HIPTG ER+
Sbjct: 314 IPILGESSSRYQINESDLRIERFRSGGPGGQHANTTESAVRIVHIPTGTTATCQNERSQH 373
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ L+++L + + Q N + + ++ W + R YV PY++V+D++T
Sbjct: 374 MNRASAMAVLQSRLDQLEITRQAQMNAEHTQSLSEIS-WGNQIRSYVLQPYRMVKDLRTN 432
Query: 299 IQLPDFNSVLDGNIKPFI 316
++ D +SVL+G++ FI
Sbjct: 433 YEVSDPDSVLEGDLDDFI 450
>gi|377574295|ref|ZP_09803326.1| peptide chain release factor 2 [Mobilicoccus pelagius NBRC 104925]
gi|377537098|dbj|GAB48491.1| peptide chain release factor 2 [Mobilicoccus pelagius NBRC 104925]
Length = 356
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 166/323 (51%), Gaps = 13/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V L+ + + ++ + + ++ + + ++ + D A
Sbjct: 28 DLWDDQENAQHVTSSLSRANAELERIEGMDSRIDDLEALVEMGTEDGGDAETLAEAETEL 87
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K + + E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ Y
Sbjct: 88 AAVKKAVGELEVRTLLSGEYDQREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHEYPT 147
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YA+G +S E G H L+ + + + A V+VV
Sbjct: 148 KVMDTSYAEEAGIKSATFEINVPYAYGNMSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 207
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I + +L +F S G+ + A + HIPTG V E++
Sbjct: 208 PL-IEQTDHIDIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGTVVSMQNEKSQIQ 266
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ AL ++++LL++ + + + +E ++ W + R YV HPY++V+D++T
Sbjct: 267 NRAAALRVMQSRLLLL----KRAEEAALNKELAGDVKASWGDQMRSYVLHPYQMVKDLRT 322
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
++ + ++V DG+I F+EA I
Sbjct: 323 EYEVGNTSAVFDGDIDGFMEAGI 345
>gi|169832431|ref|YP_001694217.1| peptide chain release factor 2 [Streptococcus pneumoniae
Hungary19A-6]
gi|172079637|ref|ZP_02709786.2| peptide chain release factor 2 [Streptococcus pneumoniae
CDC1873-00]
gi|183603431|ref|ZP_02717047.2| peptide chain release factor 2 [Streptococcus pneumoniae
CDC3059-06]
gi|183603478|ref|ZP_02714985.2| peptide chain release factor 2 [Streptococcus pneumoniae
CDC0288-04]
gi|225854263|ref|YP_002735775.1| peptide chain release factor 2 [Streptococcus pneumoniae JJA]
gi|237650402|ref|ZP_04524654.1| peptide chain release factor 2 [Streptococcus pneumoniae CCRI 1974]
gi|237822484|ref|ZP_04598329.1| peptide chain release factor 2 [Streptococcus pneumoniae CCRI
1974M2]
gi|303260019|ref|ZP_07345993.1| peptide chain release factor 2 [Streptococcus pneumoniae SP-BS293]
gi|303261425|ref|ZP_07347373.1| peptide chain release factor 2 [Streptococcus pneumoniae
SP14-BS292]
gi|303264092|ref|ZP_07350013.1| peptide chain release factor 2 [Streptococcus pneumoniae BS397]
gi|303266295|ref|ZP_07352186.1| peptide chain release factor 2 [Streptococcus pneumoniae BS457]
gi|303269536|ref|ZP_07355300.1| peptide chain release factor 2 [Streptococcus pneumoniae BS458]
gi|307127694|ref|YP_003879725.1| peptide chain release factor 2 [Streptococcus pneumoniae 670-6B]
gi|168994933|gb|ACA35545.1| peptide chain release factor 2 [Streptococcus pneumoniae
Hungary19A-6]
gi|172041988|gb|EDT50034.1| peptide chain release factor 2 [Streptococcus pneumoniae
CDC1873-00]
gi|183574752|gb|EDT95280.1| peptide chain release factor 2 [Streptococcus pneumoniae
CDC0288-04]
gi|183576822|gb|EDT97350.1| peptide chain release factor 2 [Streptococcus pneumoniae
CDC3059-06]
gi|225722944|gb|ACO18797.1| peptide chain release factor 2 [Streptococcus pneumoniae JJA]
gi|302637559|gb|EFL68046.1| peptide chain release factor 2 [Streptococcus pneumoniae
SP14-BS292]
gi|302638938|gb|EFL69399.1| peptide chain release factor 2 [Streptococcus pneumoniae SP-BS293]
gi|302640921|gb|EFL71304.1| peptide chain release factor 2 [Streptococcus pneumoniae BS458]
gi|302644225|gb|EFL74481.1| peptide chain release factor 2 [Streptococcus pneumoniae BS457]
gi|302646497|gb|EFL76723.1| peptide chain release factor 2 [Streptococcus pneumoniae BS397]
gi|306484756|gb|ADM91625.1| peptide chain release factor 2 [Streptococcus pneumoniae 670-6B]
Length = 329
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 64
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 65 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|168182216|ref|ZP_02616880.1| peptide chain release factor 2 [Clostridium botulinum Bf]
gi|237793493|ref|YP_002861045.1| peptide chain release factor 2 [Clostridium botulinum Ba4 str. 657]
gi|182674541|gb|EDT86502.1| peptide chain release factor 2 [Clostridium botulinum Bf]
gi|229262967|gb|ACQ54000.1| peptide chain release factor 2 [Clostridium botulinum Ba4 str. 657]
Length = 325
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 164/328 (50%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFTVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++V+P L +++I EDL + + G+ + + A I HIPTGI VQ
Sbjct: 175 SFASIEVLPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYL 321
>gi|57866389|ref|YP_188014.1| peptide chain release factor 2 [Staphylococcus epidermidis RP62A]
gi|71153101|sp|Q8CPZ1.2|RF2_STAES RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|71153102|sp|Q5HQX5.1|RF2_STAEQ RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|57637047|gb|AAW53835.1| peptide chain release factor 2 [Staphylococcus epidermidis RP62A]
Length = 371
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 39 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 98 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +++D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMIKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA++ S
Sbjct: 338 RTNEETGKVDAVMDGEIGPFIEAYLRKEMDS 368
>gi|253701853|ref|YP_003023042.1| hypothetical protein GM21_3258 [Geobacter sp. M21]
gi|251776703|gb|ACT19284.1| conserved hypothetical protein [Geobacter sp. M21]
Length = 371
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 160/330 (48%), Gaps = 8/330 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK-RAYRA 64
+ W+D + +VL K V + L +A + + + +L E + L + A A
Sbjct: 43 DFWNDAENAQKVLRSRTAMEKDVTIWESLDKQARDIQELIELGSEEQDEATLAEVAAMNA 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + Q E ++L GP+D GA V+I +G+ G + WAE LL MY+R+ +K+G++
Sbjct: 103 QLETG--VSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDWAEMLLRMYLRYCEKKGWK 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D GVK T E+A+GYL E G H L+ + S + A V
Sbjct: 161 TEITDYQEGDGAGVKGVTFAVTGEFAYGYLKAEAGIHRLVRISPFDSSARRHTSFASAFV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P+ E +++I++ DL + S G+ + A I HIPTG V ER+
Sbjct: 221 FPVIEEDDIEIKIAESDLRIDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVACQSERSQH 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L++KL + + + S I E W + R YV HPYK+V+D++TG+
Sbjct: 281 MNKATAMKVLRSKLYEMELREREAKASDIAGEKKEIGWGSQIRSYVLHPYKMVKDLRTGV 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ ++VLDG + F+ ++ R D
Sbjct: 341 ESGKPDAVLDGALDDFVVPYLMGVRRETKD 370
>gi|355681869|ref|ZP_09062157.1| peptide chain release factor 2 [Clostridium citroniae WAL-17108]
gi|354811280|gb|EHE95913.1| peptide chain release factor 2 [Clostridium citroniae WAL-17108]
Length = 338
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 158/319 (49%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P KS +V+ A +LK V ++L + ++ +++ Q+ E D L
Sbjct: 6 FWDNPEKSTR-MVREAKNLKDEVETFRELEQEYDDIQVMIQMG-YEENDASLIPEIEEML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L++ M LL G D A + + AG+ G W L MY RWA+K+G++
Sbjct: 64 SHFAETLEKMRMKLLLSGEYDANNAILRLNAGAGGTESCDWCSMLYRMYCRWAEKKGFKT 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T++ E A+GYL E G H L+ N + + + D++
Sbjct: 124 EVLDFLDGDEAGIKSVTVQINGENAYGYLRSEHGVHRLVRISPFNAAGKRQTSFVSCDIM 183
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQ--HIPTGIAVQSLGERNHFAN 241
P E D+ + + S Q I K ++ I+ H PTG V ER+ F N
Sbjct: 184 PDIEEDIDIEINPDDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGTVVTCQNERSQFQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LK+KL ++ E+ + + I+ + N W + R YV PY +V+D +TG +
Sbjct: 244 KDKAMQMLKSKLFMLKQEEQAAKAAGIRGDVKENGWGSQIRSYVLQPYTMVKDHRTGEES 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDG + PFI A++
Sbjct: 304 GNVDAVLDGGLDPFISAYL 322
>gi|375099193|ref|ZP_09745456.1| peptide chain release factor 2 [Saccharomonospora cyanea NA-134]
gi|374659925|gb|EHR59803.1| peptide chain release factor 2 [Saccharomonospora cyanea NA-134]
Length = 368
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 165/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDPEVAQKVTSQLSHKQASLRRVTELRQRVDDLAVLHELAEAEG-DAASRSEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+++ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 TDITRDVDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHDYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
+V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 162 QVYDISYAEEAGIRSATFKVSGPYLYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 221
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+ V D+++ ++ S G+ + A I H+PTGI V E++
Sbjct: 222 PEVEEVDHVEVPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+AKLL E+ + ++ + W + R YV HPY+LV+D++T
Sbjct: 278 QLQNKASAMKVLQAKLLQRKKEEERKELDALRDSG--SSWGNQMRSYVLHPYQLVKDLRT 335
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++VLDG + F++A I R+
Sbjct: 336 EYEVGNPSAVLDGELDGFLDAGIRWRK 362
>gi|288817909|ref|YP_003432256.1| peptide chain release factor RF-2 [Hydrogenobacter thermophilus
TK-6]
gi|384128671|ref|YP_005511284.1| peptide chain release factor 2 [Hydrogenobacter thermophilus TK-6]
gi|288787308|dbj|BAI69055.1| peptide chain release factor RF-2 [Hydrogenobacter thermophilus
TK-6]
gi|308751508|gb|ADO44991.1| peptide chain release factor 2 [Hydrogenobacter thermophilus TK-6]
Length = 369
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 140/258 (54%), Gaps = 6/258 (2%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
V K + E+ L D A +T++AG+ G WA LL MY RWA+K GY V
Sbjct: 103 VEKPIRDLEIKTFLSEEMDKNNAYLTVQAGAGGTEACDWASMLLRMYRRWAEKHGYEVEV 162
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+D G+KSAT+ + YA+GYL GE+G H L+ + + + A V VVP
Sbjct: 163 IDINPDDVAGIKSATLLIKGPYAYGYLKGESGVHRLVRISPFDANARRHTSFASVSVVPQ 222
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANK 242
++ +++I +ED+ F + G+ + A I+HIPTGI V ER+ F N+
Sbjct: 223 -IDEKINIEIREEDIQMETFRASGAGGQYVNKTDTAVRIRHIPTGITVSCQQERSQFQNR 281
Query: 243 MKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLP 302
+KAL LKAKL + ++ ++ E W + R YV PY++V+D++TG+++
Sbjct: 282 LKALELLKAKLYQLELQKLEEKKKALEGEKTDIGWGYQIRSYVFQPYQMVKDLRTGLEVG 341
Query: 303 DFNSVLDGNIKPFIEAHI 320
+ ++V+DG+I FIE ++
Sbjct: 342 NVDAVMDGDIDSFIEEYL 359
>gi|148985895|ref|ZP_01818989.1| peptide chain release factor 2 [Streptococcus pneumoniae SP3-BS71]
gi|148989834|ref|ZP_01821128.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
gi|149007634|ref|ZP_01831251.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
gi|149020396|ref|ZP_01835288.1| peptide chain release factor 2 [Streptococcus pneumoniae SP23-BS72]
gi|387757183|ref|YP_006064162.1| peptide chain release factor 2 [Streptococcus pneumoniae OXC141]
gi|405760923|ref|YP_006701519.1| peptide chain release factor 2 [Streptococcus pneumoniae SPNA45]
gi|417676506|ref|ZP_12325919.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17545]
gi|417695912|ref|ZP_12345092.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47368]
gi|418074094|ref|ZP_12711350.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11184]
gi|418078245|ref|ZP_12715468.1| peptide chain release factor 2 [Streptococcus pneumoniae 4027-06]
gi|418080197|ref|ZP_12717412.1| peptide chain release factor 2 [Streptococcus pneumoniae 6735-05]
gi|418086493|ref|ZP_12723664.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47033]
gi|418089146|ref|ZP_12726304.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43265]
gi|418091369|ref|ZP_12728514.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44452]
gi|418095857|ref|ZP_12732972.1| peptide chain release factor 2 [Streptococcus pneumoniae GA16531]
gi|418098120|ref|ZP_12735220.1| peptide chain release factor 2 [Streptococcus pneumoniae 6901-05]
gi|418107134|ref|ZP_12744174.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41410]
gi|418109716|ref|ZP_12746745.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49447]
gi|418114240|ref|ZP_12751231.1| peptide chain release factor 2 [Streptococcus pneumoniae 5787-06]
gi|418116478|ref|ZP_12753452.1| peptide chain release factor 2 [Streptococcus pneumoniae 6963-05]
gi|418125360|ref|ZP_12762276.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44511]
gi|418132596|ref|ZP_12769469.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11304]
gi|418134486|ref|ZP_12771344.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11426]
gi|418139069|ref|ZP_12775900.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13338]
gi|418145976|ref|ZP_12782760.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13637]
gi|418154787|ref|ZP_12791518.1| peptide chain release factor 2 [Streptococcus pneumoniae GA16242]
gi|418159397|ref|ZP_12796099.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17227]
gi|418161791|ref|ZP_12798482.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17328]
gi|418168847|ref|ZP_12805493.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19077]
gi|418173115|ref|ZP_12809729.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41277]
gi|418180111|ref|ZP_12816683.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41688]
gi|418182350|ref|ZP_12818911.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43380]
gi|418191303|ref|ZP_12827807.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47388]
gi|418202031|ref|ZP_12838461.1| peptide chain release factor 2 [Streptococcus pneumoniae GA52306]
gi|418213925|ref|ZP_12840660.1| peptide chain release factor 2 [Streptococcus pneumoniae GA54644]
gi|418216203|ref|ZP_12842927.1| peptide chain release factor 2 [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218494|ref|ZP_12845162.1| peptide chain release factor 2 [Streptococcus pneumoniae NP127]
gi|418220676|ref|ZP_12847332.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47751]
gi|418225179|ref|ZP_12851808.1| peptide chain release factor 2 [Streptococcus pneumoniae NP112]
gi|418231822|ref|ZP_12858410.1| peptide chain release factor 2 [Streptococcus pneumoniae GA07228]
gi|418236121|ref|ZP_12862690.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19690]
gi|418238326|ref|ZP_12864882.1| peptide chain release factor 2 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422635|ref|ZP_13962854.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43264]
gi|419431153|ref|ZP_13971299.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP05]
gi|419433412|ref|ZP_13973531.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40183]
gi|419439964|ref|ZP_13980018.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40410]
gi|419455160|ref|ZP_13995120.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP04]
gi|419457127|ref|ZP_13997073.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02254]
gi|419459600|ref|ZP_13999536.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02270]
gi|419461880|ref|ZP_14001796.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02714]
gi|419464125|ref|ZP_14004018.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04175]
gi|419466724|ref|ZP_14006607.1| peptide chain release factor 2 [Streptococcus pneumoniae GA05248]
gi|419468626|ref|ZP_14008497.1| peptide chain release factor 2 [Streptococcus pneumoniae GA06083]
gi|419479591|ref|ZP_14019399.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19101]
gi|419484380|ref|ZP_14024156.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43257]
gi|419488227|ref|ZP_14027980.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44386]
gi|419496935|ref|ZP_14036646.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47522]
gi|419499284|ref|ZP_14038983.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47597]
gi|419512151|ref|ZP_14051785.1| peptide chain release factor 2 [Streptococcus pneumoniae GA05578]
gi|419516435|ref|ZP_14056053.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02506]
gi|419525498|ref|ZP_14065063.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14373]
gi|419534195|ref|ZP_14073701.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17457]
gi|421240319|ref|ZP_15696867.1| peptide chain release factor 2 [Streptococcus pneumoniae 2080913]
gi|421272397|ref|ZP_15723244.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR55]
gi|421280736|ref|ZP_15731535.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04672]
gi|421282942|ref|ZP_15733731.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04216]
gi|421285414|ref|ZP_15736191.1| peptide chain release factor 2 [Streptococcus pneumoniae GA60190]
gi|421297360|ref|ZP_15748063.1| peptide chain release factor 2 [Streptococcus pneumoniae GA58581]
gi|421300608|ref|ZP_15751279.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19998]
gi|421306939|ref|ZP_15757585.1| peptide chain release factor 2 [Streptococcus pneumoniae GA60132]
gi|421309183|ref|ZP_15759812.1| peptide chain release factor 2 [Streptococcus pneumoniae GA62681]
gi|147760789|gb|EDK67760.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
gi|147922041|gb|EDK73165.1| peptide chain release factor 2 [Streptococcus pneumoniae SP3-BS71]
gi|147924776|gb|EDK75860.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
gi|147930698|gb|EDK81680.1| peptide chain release factor 2 [Streptococcus pneumoniae SP23-BS72]
gi|332077171|gb|EGI87633.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17545]
gi|332203909|gb|EGJ17976.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47368]
gi|353747436|gb|EHD28092.1| peptide chain release factor 2 [Streptococcus pneumoniae 4027-06]
gi|353749594|gb|EHD30238.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11184]
gi|353753808|gb|EHD34424.1| peptide chain release factor 2 [Streptococcus pneumoniae 6735-05]
gi|353759756|gb|EHD40339.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47033]
gi|353762833|gb|EHD43391.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43265]
gi|353766742|gb|EHD47282.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44452]
gi|353770485|gb|EHD50998.1| peptide chain release factor 2 [Streptococcus pneumoniae 6901-05]
gi|353770844|gb|EHD51355.1| peptide chain release factor 2 [Streptococcus pneumoniae GA16531]
gi|353780611|gb|EHD61068.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41410]
gi|353785009|gb|EHD65429.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49447]
gi|353787538|gb|EHD67940.1| peptide chain release factor 2 [Streptococcus pneumoniae 5787-06]
gi|353790316|gb|EHD70699.1| peptide chain release factor 2 [Streptococcus pneumoniae 6963-05]
gi|353799404|gb|EHD79723.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44511]
gi|353806552|gb|EHD86825.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11304]
gi|353815544|gb|EHD95760.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13637]
gi|353823079|gb|EHE03254.1| peptide chain release factor 2 [Streptococcus pneumoniae GA16242]
gi|353824749|gb|EHE04917.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17227]
gi|353831381|gb|EHE11510.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17328]
gi|353836766|gb|EHE16854.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19077]
gi|353839814|gb|EHE19888.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41277]
gi|353846077|gb|EHE26112.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41688]
gi|353850587|gb|EHE30591.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43380]
gi|353857204|gb|EHE37167.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47388]
gi|353867834|gb|EHE47724.1| peptide chain release factor 2 [Streptococcus pneumoniae GA52306]
gi|353871208|gb|EHE51079.1| peptide chain release factor 2 [Streptococcus pneumoniae GA54644]
gi|353873254|gb|EHE53115.1| peptide chain release factor 2 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353876691|gb|EHE56540.1| peptide chain release factor 2 [Streptococcus pneumoniae NP127]
gi|353877545|gb|EHE57388.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47751]
gi|353882487|gb|EHE62298.1| peptide chain release factor 2 [Streptococcus pneumoniae NP112]
gi|353888128|gb|EHE67904.1| peptide chain release factor 2 [Streptococcus pneumoniae GA07228]
gi|353894050|gb|EHE73795.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19690]
gi|353894749|gb|EHE74490.1| peptide chain release factor 2 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353903076|gb|EHE78602.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11426]
gi|353905906|gb|EHE81322.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13338]
gi|379532613|gb|EHY97838.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02254]
gi|379534472|gb|EHY99684.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02270]
gi|379534771|gb|EHY99981.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02714]
gi|379539344|gb|EHZ04523.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04175]
gi|379544847|gb|EHZ09991.1| peptide chain release factor 2 [Streptococcus pneumoniae GA05248]
gi|379546729|gb|EHZ11867.1| peptide chain release factor 2 [Streptococcus pneumoniae GA06083]
gi|379559889|gb|EHZ24916.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14373]
gi|379567239|gb|EHZ32225.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17457]
gi|379573245|gb|EHZ38201.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19101]
gi|379577542|gb|EHZ42461.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40183]
gi|379580575|gb|EHZ45465.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40410]
gi|379583891|gb|EHZ48768.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43257]
gi|379589966|gb|EHZ54805.1| peptide chain release factor 2 [Streptococcus pneumoniae GA43264]
gi|379590342|gb|EHZ55180.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44386]
gi|379601449|gb|EHZ66222.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47522]
gi|379602338|gb|EHZ67109.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47597]
gi|379629617|gb|EHZ94211.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP04]
gi|379632397|gb|EHZ96973.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP05]
gi|379636621|gb|EIA01179.1| peptide chain release factor 2 [Streptococcus pneumoniae GA05578]
gi|379640438|gb|EIA04977.1| peptide chain release factor 2 [Streptococcus pneumoniae GA02506]
gi|395609256|gb|EJG69344.1| peptide chain release factor 2 [Streptococcus pneumoniae 2080913]
gi|395877956|gb|EJG89025.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR55]
gi|395882808|gb|EJG93852.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04216]
gi|395884093|gb|EJG95135.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04672]
gi|395887393|gb|EJG98408.1| peptide chain release factor 2 [Streptococcus pneumoniae GA60190]
gi|395892934|gb|EJH03924.1| peptide chain release factor 2 [Streptococcus pneumoniae GA58581]
gi|395900032|gb|EJH10971.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19998]
gi|395908902|gb|EJH19779.1| peptide chain release factor 2 [Streptococcus pneumoniae GA60132]
gi|395911927|gb|EJH22791.1| peptide chain release factor 2 [Streptococcus pneumoniae GA62681]
gi|404277812|emb|CCM08367.1| peptide chain release factor 2 [Streptococcus pneumoniae SPNA45]
Length = 325
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|376284273|ref|YP_005157483.1| peptide chain release factor 2 [Corynebacterium diphtheriae 31A]
gi|371577788|gb|AEX41456.1| peptide chain release factor 2 [Corynebacterium diphtheriae 31A]
Length = 369
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 13/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K +
Sbjct: 103 LTADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDH 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D + G+KSAT EY +G LS E GAH L+ + + + A ++
Sbjct: 159 KVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 VLPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+AKLL + + + + + W + R YV HPY++V+D++T
Sbjct: 278 IQNKASAMRVLQAKLLERKRQDERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTN 336
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D VLDG+I +EA I R
Sbjct: 337 YEVNDPQKVLDGDIDGLLEAGIRWR 361
>gi|229916623|ref|YP_002885269.1| peptide chain release factor 2 [Exiguobacterium sp. AT1b]
gi|259585245|sp|C4L5K9.1|RF2_EXISA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|229468052|gb|ACQ69824.1| peptide chain release factor 2 [Exiguobacterium sp. AT1b]
Length = 366
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 9/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ K+ +V+ + +V+ +DL + E+ ++ +L + E D + + +
Sbjct: 44 DFWDNQEKAQKVIDESNGLKAMVDKYQDLANQHEDGEVTLELIKEEP-DAEMQEELGESI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K D +E+ LL GP D A + + G+ G + WA LL MY R+ADK+G++
Sbjct: 103 QALKKEFDDFELEILLNGPYDANNAILELHPGAGGTESQDWASMLLRMYQRFADKQGWKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD + GVKS T+ A+GYL E G H L+ F + H + ++C DV
Sbjct: 163 ETVDYLPGEEAGVKSVTLRIVGHNAYGYLKAEKGIHRLVRISPFDSSGRRHTSFVSC-DV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P F + ++++ EDL + + G+ + A I H+PTG+ V ER+
Sbjct: 222 MPEF-DDDIEIEVRTEDLRIDTYRASGAGGQHINTTDSAVRITHVPTGVVVSCQTERSQI 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LKAKL ++ + I+ E W + R YV HPY +V+D +T
Sbjct: 281 KNRESAMKMLKAKLYQRELDEQQRKLDEIRGEKTDIGWGSQIRSYVFHPYSMVKDHRTNY 340
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
++ + + V+DG++ PFI+A++
Sbjct: 341 EVGNTSGVMDGDVMPFIDAYL 361
>gi|433646380|ref|YP_007291382.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
smegmatis JS623]
gi|433296157|gb|AGB21977.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
smegmatis JS623]
Length = 368
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 172/330 (52%), Gaps = 14/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V +L+ + + +++LR + ++ ++ +LA E + A
Sbjct: 43 NLWDDQTRAQKVTSELSHTQGELRRVEELRQRLDDLPVMYELAAEEGG----AEEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL ++ E+ LL G D A V I++G+ G+ WAE L+ MY+RWA+
Sbjct: 99 AELRKLREDIEAMEVRTLLSGEYDAREALVNIRSGAGGVDAADWAEMLMRMYIRWAEAHK 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 159 YSVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ ET+ + I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 EVLPV-TETTDHIDIPESDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 278 QLQNKVSAMRVLQAKLLERKRLEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +VLDG+I F+EA I R D
Sbjct: 337 DYEVGNPAAVLDGDIDGFLEAGIRWRNRRD 366
>gi|225387178|ref|ZP_03756942.1| hypothetical protein CLOSTASPAR_00930 [Clostridium asparagiforme
DSM 15981]
gi|225046726|gb|EEG56972.1| hypothetical protein CLOSTASPAR_00930 [Clostridium asparagiforme
DSM 15981]
Length = 338
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 159/319 (49%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP KS ++ ++ + V ++L + ++ +++ Q+ E D +
Sbjct: 6 FWDDPEKSTRMVREVKNLKDDVETYRELEQEYDDIQVMIQMG-YEENDASVIPDIQEMLD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K L+ + LL G D A + + AG+ G W L MY RWA+++G++
Sbjct: 65 HFIKTLEDMRLKLLLSGEYDKNNAILRLNAGAGGTESCDWCSMLYRMYCRWAERKGFKYE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS TI+ E A+GYL E G H L+ N + + + DV+P
Sbjct: 125 VLDFLDGDEAGIKSVTIQVNGENAYGYLRSEHGVHRLVRISPFNAAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D++++ +D+ + S G+ + A I H+PTGI V ER+ F N
Sbjct: 185 -DIEADLDVEVNPDDIRVDTYRSSGAGGQHINKTSSAIRITHMPTGIVVTCQNERSQFQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KA+ LKAKL ++ ++ + + I+ E W + R YV PY +V+D +TG +
Sbjct: 244 KDKAMQMLKAKLYMLKQQESAAKAAGIRGEVKDIGWGNQIRSYVLQPYTMVKDHRTGEES 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDG+I FI A++
Sbjct: 304 GNVDAVLDGSIDSFISAYL 322
>gi|376242385|ref|YP_005133237.1| peptide chain release factor 2 [Corynebacterium diphtheriae CDCE
8392]
gi|372105627|gb|AEX71689.1| peptide chain release factor 2 [Corynebacterium diphtheriae CDCE
8392]
Length = 369
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 103 LTAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 161 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 221 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 280 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 339 VNDPQKVLDGDIDGLLEAGIRWR 361
>gi|422558585|ref|ZP_16634325.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA2]
gi|328752610|gb|EGF66226.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA2]
Length = 370
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 173/329 (52%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLW D + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWGDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 225 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 283
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 284 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 341
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 342 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 370
>gi|399023710|ref|ZP_10725764.1| peptide chain release factor 2 [Chryseobacterium sp. CF314]
gi|398082239|gb|EJL72997.1| peptide chain release factor 2 [Chryseobacterium sp. CF314]
Length = 370
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 167/320 (52%), Gaps = 11/320 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD P ++ L +L K V +D+ + E+ +++ + A+ + A+
Sbjct: 42 FWDTPKEAEAFLKQLRSKKKWVEDYEDINTQFEDLQVLMEFAKEDPDSEKELDEAFPKL- 100
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
V K+ D E +L D A + I AG+ G WA L+ MY WA+K+GY+ R
Sbjct: 101 -VEKIED-LEFKNMLSNEGDELSAVLQITAGAGGTESCDWASMLMRMYTMWAEKQGYKIR 158
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++ + GVK+ T+E + EYAFGYL GE G H L+ F + + H + V V
Sbjct: 159 ELNFQEGEVAGVKTVTLEIDGEYAFGYLKGENGVHRLVRISPFDSNAKRH-TSFVSVYVY 217
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL ++ + ++ I+ D+ F S G+ + + A ++H PTGI +++ R+
Sbjct: 218 PL-VDDTIEININPADISFETMRSSGAGGQNVNKVETAVRLRHAPTGIIIENSESRSQLQ 276
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L+++L + E+ + + I+ + W + R YV HPYKLV+DV++G +
Sbjct: 277 NKEKAMQLLRSRLYEMELEERMRARNEIEANKMKIEWGSQIRNYVMHPYKLVKDVRSGHE 336
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D +SV++GN+ PF++A +
Sbjct: 337 TSDVDSVMNGNLTPFLKAFL 356
>gi|307706955|ref|ZP_07643754.1| peptide chain release factor 2 [Streptococcus mitis SK321]
gi|307617669|gb|EFN96837.1| peptide chain release factor 2 [Streptococcus mitis SK321]
Length = 325
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 172/329 (52%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHEELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|418977881|ref|ZP_13525688.1| peptide chain release factor 2 [Streptococcus mitis SK575]
gi|383349082|gb|EID27032.1| peptide chain release factor 2 [Streptococcus mitis SK575]
Length = 329
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 172/329 (52%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHEELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNTKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|390457185|ref|ZP_10242713.1| peptide chain release factor 2 [Paenibacillus peoriae KCTC 3763]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 172/326 (52%), Gaps = 13/326 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID--YGLFKRAYR 63
+ WDD K+ +V+ ++ V++ + LR + E+A ++A+LA+ E + G + + R
Sbjct: 5 DFWDDNEKAQDVIAEMNAVKSSVDSYEQLRQEYEDAGMMAELADEEGDETLVGEIENSVR 64
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ L SKL ++E+ LL P D A + + G+ G + W + LL MY RWA+K G+
Sbjct: 65 SLL--SKLQ-EFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRMYTRWAEKRGF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T+ + A+GYL E G H L+ F + H + ++C
Sbjct: 122 KVETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC- 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
DVVP + D++I EDL + + G+ + A I H+PTGI V ER+
Sbjct: 181 DVVPEIAD-DVDIEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGIVVTCQNERS 239
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ +A+ L++KL E+ ++ I+ E W + R YV HPY +V+D +T
Sbjct: 240 QIKNRERAMTMLRSKLYERKIEEQRQHLDEIRGEQSDIAWGSQIRSYVFHPYSMVKDHRT 299
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG++ PFI+ ++ S+
Sbjct: 300 SVETGNVGAVMDGDLDPFIDGYLRSQ 325
>gi|376250835|ref|YP_005137716.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC03]
gi|372112339|gb|AEX78398.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC03]
Length = 369
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 13/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L DV L E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K +
Sbjct: 103 LTADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDH 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D + G+KSAT EY +G LS E GAH L+ + + + A ++
Sbjct: 159 KVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 VLPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 278 IQNKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTN 336
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D VLDG+I +EA I R
Sbjct: 337 YEVNDPQKVLDGDIDGLLEAGIRWR 361
>gi|406659286|ref|ZP_11067424.1| peptide chain release factor RF2 [Streptococcus iniae 9117]
gi|405577395|gb|EKB51543.1| peptide chain release factor RF2 [Streptococcus iniae 9117]
Length = 338
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 165/330 (50%), Gaps = 15/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL-IAQLAEMEAIDYGLFKRAYRA 64
+ W+D + + +L D N ++ +EE +L + L E E++ K A
Sbjct: 16 DFWNDNIAAQKTSQELNDLKVTYNTFHQMQDLSEETELYLEMLDEDESV-----KEELEA 70
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
SL+ + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +GY
Sbjct: 71 SLEKLDQILASYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYSRFGNAKGY 130
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T+ FE A+G+L E G H L+ F + H + V
Sbjct: 131 KVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTSV 189
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P L+ + ++ I D+++ F S G+ + + HIPTGI V S +R
Sbjct: 190 EVMPE-LDDTIEVDIRDDEIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRT 248
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +T
Sbjct: 249 QYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRT 308
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I FI+A++ R + D
Sbjct: 309 NFEVSQVDKVMDGDIDGFIDAYLKWRMNDD 338
>gi|254491393|ref|ZP_05104572.1| peptide chain release factor 2 [Methylophaga thiooxidans DMS010]
gi|224462871|gb|EEF79141.1| peptide chain release factor 2 [Methylophaga thiooxydans DMS010]
Length = 348
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 173/325 (53%), Gaps = 14/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDDP ++ ++ + A K+V L R E+AK + +LA +E D F A A
Sbjct: 28 SVWDDPDRAQKLGQERASLEKIVTTLSSHRDTLEDAKDLLELA-VEENDQETFD-AITAD 85
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K L++ E ++ G D A + I++GS G + WA LL MY+RW + + Y+
Sbjct: 86 LDELEKGLEKLEFQRMFSGKLDKNSAYIDIQSGSGGTEAQDWANILLRMYLRWGESQDYK 145
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ + G+KSATI E EYAFG L ETG H L+ F +G+ H + A +
Sbjct: 146 VELMEVSAGEVAGIKSATIRMEGEYAFGMLRTETGVHRLVRKSPFDSGARRH-TSFASIF 204
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V P ++ + ++ I+ DL + + G+ + A I H PT I VQ ER+
Sbjct: 205 VYP-EVDDTIEIDINPADLRVDTYRASGAGGQHVNTTDSAIRITHEPTNIVVQCQNERSQ 263
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQDVKT 297
NK +A+N+L+AKL + Q + V E+ +I W + R YV + ++D++T
Sbjct: 264 HKNKDQAMNQLRAKLYELE-LQKQNEVKQAAEESKSDIGWGSQIRSYVLDQSR-IKDLRT 321
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINS 322
G++ + +VLDG++ FIEA + S
Sbjct: 322 GVETGNTQAVLDGDLDQFIEASLKS 346
>gi|88856358|ref|ZP_01131017.1| peptide chain release factor 2 [marine actinobacterium PHSC20C1]
gi|88814442|gb|EAR24305.1| peptide chain release factor 2 [marine actinobacterium PHSC20C1]
Length = 368
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 173/327 (52%), Gaps = 14/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V L+ + + + + ++ +++ QLA E+ D A
Sbjct: 44 DLWDDTDKAQKVTSDLSHRQAELAKINSISNRLDDLEIMVQLANEES-DAQAGADARAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A +TI+AG+ G+ +AE LL MY+R+A++ Y
Sbjct: 103 TGIKKTLGDLEVQTLLNGEFDQRPAVITIRAGAGGVDAADFAEMLLRMYLRYAEQHSYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
RV+D + G+KSAT E + +AFG LS E G H L+ N + + + A V+VV
Sbjct: 163 RVLDTSYAEEAGIKSATFEVDAPFAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +ET+ +++ + D+ +F S G+ + A I H+PTGI V E++
Sbjct: 223 PL-IETTDVVEVPENDIRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKRE---AIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LL++ EQ + K+E I W + R YV PY++V+D++T
Sbjct: 282 NRAAAMRVLQSRLLLLQREQE----AATKKEIAGVITASWGDQMRSYVLAPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++V DG++ FI A I R+
Sbjct: 338 EFEVNNPSNVFDGDLDGFISAGIKWRK 364
>gi|409358684|ref|ZP_11237043.1| peptide chain release factor 2 [Dietzia alimentaria 72]
Length = 369
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 173/334 (51%), Gaps = 9/334 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M + +LW+D ++ +V +L+ + + LR + E+ L+ +LAE E D
Sbjct: 38 MAADPDLWNDQERAQKVTSELSYVQADLRRCRALRQRVEDLPLMYELAEEEGEDAVAEAD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
RA+L + ++ E+ +L G D A V I+AG+ GI +A+ L+ MY+RWA+K
Sbjct: 98 LERANL--REDVEAMEVKTMLSGEYDQREAVVNIRAGAGGIDAADFADMLMRMYIRWAEK 155
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSAT Y +G LS E G H L+ + + + A
Sbjct: 156 AGHKVEVYDTSYAEEAGIKSATFVVRDPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 215
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET + I + D+ ++ S G+ + A + H+PTGI V E
Sbjct: 216 EVEVLPV-VETVDSIDIPENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTCQNE 274
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + + + W + R YV HPY++V+D+
Sbjct: 275 KSQLQNKVAAMKVLQAKLLERKRQEERAAMDALGAGGNAS-WGNQMRSYVLHPYQMVKDL 333
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+T ++ + ++VLDG+I FIEA I R D
Sbjct: 334 RTDYEVNNPSAVLDGDISGFIEAGIRWRMREGAD 367
>gi|344344357|ref|ZP_08775220.1| peptide chain release factor 2 [Marichromatium purpuratum 984]
gi|343804027|gb|EGV21930.1| peptide chain release factor 2 [Marichromatium purpuratum 984]
Length = 365
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 144/255 (56%), Gaps = 9/255 (3%)
Query: 74 QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCC 133
+ E ++ G D A V I+AGS G + W+E LL MY+RW ++ G++ +++
Sbjct: 112 ELEFRRMFSGEMDANNAFVDIQAGSGGTEAQDWSEMLLRMYLRWGERRGFKTELMEASAG 171
Query: 134 KNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETS 190
+ G+KSATI+FE EYAFG+L ETG H L+ F +G+ H + A V V P ++ +
Sbjct: 172 EVAGIKSATIKFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVFVSP-EIDDT 229
Query: 191 PDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALN 247
D++I+ DL ++ + G+ + + A I H PTGI Q +R+ NK +A+
Sbjct: 230 VDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHNPTGIVTQCQNDRSQHKNKDQAMK 289
Query: 248 RLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSV 307
+L+AKL + ++ ++ ++ W + R YV + ++D++TG+++ + SV
Sbjct: 290 QLRAKLYELEMQKRQADQQALEESKSDIGWGSQIRSYVLDQSR-IKDLRTGVEIGNTQSV 348
Query: 308 LDGNIKPFIEAHINS 322
LDGN+ PFIEA + S
Sbjct: 349 LDGNLDPFIEASLKS 363
>gi|339499853|ref|YP_004697888.1| peptide chain release factor 2 [Spirochaeta caldaria DSM 7334]
gi|338834202|gb|AEJ19380.1| Peptide chain release factor 2 [Spirochaeta caldaria DSM 7334]
Length = 369
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 28/330 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAK-LIAQLAEMEAIDYGLFKRAYRA 64
+ W+DP+K+ KV+N +K L+ + E K L+A++ ++E + Y L +
Sbjct: 44 DFWNDPSKAE----------KVMNEIKALKTRYEPWKALVAEIEDLEVL-YQLASAEHDE 92
Query: 65 SL---------DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
S D+ K ++ + +L+ G D +T+ AG+ G WA+ L MY+
Sbjct: 93 SHAPEIEATFKDIQKRFEKQNLVELMSGEVDQSSCFLTVHAGAGGTEACDWAQMLYRMYL 152
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA++ G+ VD + GG+KS T++ E +YA+GYL GETG H L+ + +
Sbjct: 153 RWAERRGFSIEEVDMLEAE-GGIKSVTVKIEGDYAYGYLKGETGVHRLVRISPFDANARR 211
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V V P+ L+ S +++I EDL + S G+ + A + H+PTGI V
Sbjct: 212 HTSFASVYVFPV-LDDSIEVEIRPEDLRIDTYRSGGAGGQHVNKTDSAVRLTHLPTGIVV 270
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ NK A++ LKA+L + +E W + R YV PY
Sbjct: 271 ACQNERSQIKNKATAMSMLKARLYEYYRAEKEKENERFAQEKKDISWGNQIRSYVFQPYT 330
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
LV+D +T +++ + +V+DG+I FIE ++
Sbjct: 331 LVKDARTKVEVGNIQAVMDGDIDVFIEEYL 360
>gi|421206200|ref|ZP_15663264.1| peptide chain release factor 2 [Streptococcus pneumoniae 2090008]
gi|421210707|ref|ZP_15667695.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070035]
gi|421231521|ref|ZP_15688168.1| peptide chain release factor 2 [Streptococcus pneumoniae 2080076]
gi|421291559|ref|ZP_15742299.1| peptide chain release factor 2 [Streptococcus pneumoniae GA56348]
gi|421311502|ref|ZP_15762109.1| peptide chain release factor 2 [Streptococcus pneumoniae GA58981]
gi|395574580|gb|EJG35157.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070035]
gi|395577280|gb|EJG37825.1| peptide chain release factor 2 [Streptococcus pneumoniae 2090008]
gi|395596620|gb|EJG56836.1| peptide chain release factor 2 [Streptococcus pneumoniae 2080076]
gi|395894861|gb|EJH05838.1| peptide chain release factor 2 [Streptococcus pneumoniae GA56348]
gi|395912080|gb|EJH22943.1| peptide chain release factor 2 [Streptococcus pneumoniae GA58981]
Length = 325
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSYEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|376287261|ref|YP_005159827.1| peptide chain release factor 2 [Corynebacterium diphtheriae BH8]
gi|371584595|gb|AEX48260.1| peptide chain release factor 2 [Corynebacterium diphtheriae BH8]
Length = 369
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 103 LTAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 161 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 221 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 280 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 339 VNDPQKVLDGDIDGLLEAGIRWR 361
>gi|300174043|ref|YP_003773209.1| peptide chain release factor 2 [Leuconostoc gasicomitatum LMG
18811]
gi|299888422|emb|CBL92390.1| Peptide chain release factor 2 [Leuconostoc gasicomitatum LMG
18811]
Length = 372
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 154/320 (48%), Gaps = 8/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +++ + ++ +L +AEE L+ ++ + D + + +
Sbjct: 45 FWDDNVKAQKIIEENNVLKNRRDSFLNLTSQAEEIDLLIEMLSEDVTDSEMMSELEESIV 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K ++ Y + +LL P D A + + GS G W L MY RWA + G++
Sbjct: 105 KAQKDIETYNLEQLLTEPYDANNAILEVHPGSGGTESTDWGANLYRMYTRWAQQHGFQVD 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D G+ SATI+ AFG+L E G H + F + H + VDV+
Sbjct: 165 VLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVRISPFDSAGRRH-TSFVSVDVM 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ + D++I D+D+ +F S G+ + + H PTGI V S ER +
Sbjct: 224 PE-LDDTIDIEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSSTVERTQYG 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK KL + E+ + + + + + N W + R YV HPY++V+D +T +
Sbjct: 283 NRDYAMRLLKGKLYQLELEKQEAERAALTGDKLENGWGSQIRSYVLHPYQMVKDHRTDYE 342
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
VLDG++ PFI A++
Sbjct: 343 TNQPQQVLDGDLDPFINAYL 362
>gi|295398527|ref|ZP_06808561.1| peptide chain release factor RF2 [Aerococcus viridans ATCC 11563]
gi|294973250|gb|EFG49043.1| peptide chain release factor RF2 [Aerococcus viridans ATCC 11563]
Length = 353
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 163/328 (49%), Gaps = 9/328 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ V+ KV + +L + EE L+ ++ + E D L K
Sbjct: 29 FWDDSEKAQSVIDANNALKKVYDEFNNLADEYEELTLLNEMVKEEP-DPDLSKELVNRIQ 87
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ YE + LL G D A + I G+ G + WA LL MY RWAD+ Y+
Sbjct: 88 AFQAKISAYERNILLSGEYDHNDALLEIHPGAGGTESQDWASMLLRMYQRWADQHDYQVT 147
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D G+KS T+E + A+G+L E G H L+ F + H + A V+++
Sbjct: 148 TLDFQNGDEAGIKSVTLEIKGLNAYGFLKSEDGIHRLVRISPFDSNKRRH-TSFASVEIM 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ L+ + +++I + D+ +F + G+ + A + H+PTGI V S G+R+ F
Sbjct: 207 PV-LDQNTEIEIDESDIEMDVFRASGAGGQHINKTSSAVRLTHVPTGIVVASQGQRSQFQ 265
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+AKL ++ E+ + I+ E W + R YV HPY +V+D +T +
Sbjct: 266 NRDTAMKMLQAKLAHLLAEKNAKELDEIRGEKSEIAWGSQIRSYVFHPYNMVKDHRTDYE 325
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ V+DG++ FI+A++ ++ S +
Sbjct: 326 TANVQGVMDGDLDGFIDAYLKNQLSDEN 353
>gi|222150753|ref|YP_002559906.1| peptide chain release factor RF-2 [Macrococcus caseolyticus
JCSC5402]
gi|222119875|dbj|BAH17210.1| peptide chain release factor RF-2 [Macrococcus caseolyticus
JCSC5402]
Length = 350
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 167/329 (50%), Gaps = 8/329 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D K+ +++ K VV L E ++++ ++ + E+ D +
Sbjct: 23 MMADPDFWNDGDKAQDIINKNNALKSVVQEFSTLEEGLENSEVLFEMYKEES-DEDTHQE 81
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ + +E+ LL G D A + + G+ G + W E LL MY R+ADK
Sbjct: 82 LIEQLNTLQQIANDFELKMLLSGEFDANNAILELHPGAGGTESQDWGEMLLRMYQRFADK 141
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+G++ VD G+KS T+ + A+GYL E G H L+ F + H + +
Sbjct: 142 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 201
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
+C +V P F + +++I+ ED+ + + G+ + A I H PTGI V
Sbjct: 202 SC-EVTPEFDNDNIEIEINSEDIKIDTYRASGAGGQHVNTTDSAVRITHQPTGIVVTCQN 260
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ N+ +A+ LKAKL E+ + ++ I+ E W + R YV HPY +V+D
Sbjct: 261 ERSQIKNREQAMKMLKAKLYQKKIEEQEAELAAIRGEQKEIGWGSQIRSYVFHPYSMVKD 320
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T ++ + N+V+DG+I FI+A++ S+
Sbjct: 321 HRTNVETGNTNAVMDGDIDLFIDAYLKSQ 349
>gi|291299376|ref|YP_003510654.1| peptide chain release factor 2 [Stackebrandtia nassauensis DSM
44728]
gi|290568596|gb|ADD41561.1| peptide chain release factor 2 [Stackebrandtia nassauensis DSM
44728]
Length = 376
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 171/326 (52%), Gaps = 6/326 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD T + +V +L+ +N ++DLR + ++A+++ LA+ E D + A +
Sbjct: 44 DLWDDTTHAQKVTSRLSYVQSELNRIEDLRRRLDDAEVLWDLAQSEE-DPAAVEEASKEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK +++ E+ LL G D A ++I++G+ G +AEQL+ MY+RWA++ GY
Sbjct: 103 AALSKAIEELEVRTLLSGEYDSREALISIRSGAGGADSADFAEQLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H ++ + + A V+VV
Sbjct: 163 EVYDVSYAEEAGIKSATFAVKAPYAYGTLSVEQGTHRVVRISKYDNQGRRQTAFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL--LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
P+ +T DE ++ S G+ + A I H+ TGI V ER+ N
Sbjct: 223 PVVEQTDDIDIPDDEIRVDVYRSSGPGGQGVNTTDSAVRITHLETGIVVSCQNERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LKAKLL E+ + + + R ++ W + R YV HPY++V+D++TG +
Sbjct: 283 RATAMAVLKAKLLARRREEENAKIDEL-RGSVQASWGEQMRSYVQHPYQMVKDLRTGWET 341
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSSD 327
+ +V DG I IEA I R+ +
Sbjct: 342 ANVMAVYDGEIDGLIEAGIRWRKQQE 367
>gi|258517064|ref|YP_003193286.1| peptide chain release factor 2 [Desulfotomaculum acetoxidans DSM
771]
gi|257780769|gb|ACV64663.1| bacterial peptide chain release factor 2 (bRF- 2) [Desulfotomaculum
acetoxidans DSM 771]
Length = 366
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 163/324 (50%), Gaps = 15/324 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
WDD ++ ++ + A V+ +LR E+ +++A+LA+ E D L + A
Sbjct: 43 GFWDDQAQAQKISRQQAVLKDSVSLYGELRQSLEDLEVLAELAQEEDDDIALRETAKDLK 102
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ L VS+L E+ LL G D A +++ AG+ G + W E LL M+ RWA+
Sbjct: 103 QLELRVSEL----ELDVLLSGEYDRGNAIISLHAGAGGTEAQDWVEMLLRMFTRWAEDHR 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
YR V+D G+KS T+E AFGYL E G H L+ F H + A
Sbjct: 159 YRVIVLDMLSGDEAGIKSVTVEIVGPNAFGYLKSEKGVHRLVRISPFDTAGRRH-TSFAS 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P ++ D++I EDL F + G+ + A I H+PTGI V ER
Sbjct: 218 VEVLP-EVDEDVDIEIKTEDLKIDTFRAGGAGGQHVNKTDSAVRITHLPTGIVVSCQNER 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ +N+ A+ LKAKL + ++ + ++ ++ + W + R YV HPY LV+D +
Sbjct: 277 SQLSNRNSAMKLLKAKLAELELQKKEAEMASLRGDHQEIAWGSQIRSYVFHPYSLVKDHR 336
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI 320
TG + + +V++G + F+ A +
Sbjct: 337 TGAETGNIEAVMNGELDKFMAAFL 360
>gi|342163427|ref|YP_004768066.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae
IS7493]
gi|341933309|gb|AEL10206.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae
IS7493]
Length = 325
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L +
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELVTQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|226947396|ref|YP_002802487.1| peptide chain release factor 2 [Clostridium botulinum A2 str.
Kyoto]
gi|226842678|gb|ACO85344.1| peptide chain release factor 2 [Clostridium botulinum A2 str.
Kyoto]
Length = 325
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++++P L +++I EDL + + G+ + + A I HIPTGI VQ
Sbjct: 175 SFASIEILPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYL 321
>gi|381180503|ref|ZP_09889342.1| bacterial peptide chain release factor 2 (bRF-2) [Treponema
saccharophilum DSM 2985]
gi|380767491|gb|EIC01491.1| bacterial peptide chain release factor 2 (bRF-2) [Treponema
saccharophilum DSM 2985]
Length = 380
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 8/323 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ +V+ L + +DL +A++ + +LA + D G + R +L
Sbjct: 44 FWNDTEKAQKVMNDLKLLKGRIEPWRDLISQADDISTLYELAIEDGDDDGSLEAEVRTNL 103
Query: 67 DVS-KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K ++ + LL G D G +TI AG+ G WA L MY+RWA++ GY+
Sbjct: 104 EAAQKRFEELSILNLLSGEADKNGCFLTIHAGAGGTEACDWAYMLSRMYIRWAERHGYKL 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GG+KS TI+ E +Y +G+L GE G H L+ + + + + V +
Sbjct: 164 ETVD-LQEDEGGIKSTTIQIEGDYVYGHLKGEAGVHRLVRISPFDANARRHTSFSSVFIF 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ L+ + ++ I EDL + S G+ + A H+PTGI VQ ER+
Sbjct: 223 PI-LDDTIEVNIRPEDLRVDTYRSGGKGGQHVNKTDSAVRFTHLPTGIVVQCDSERSQIM 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +N L+AKL EQ + E W + R YV PY +V+D +T
Sbjct: 282 NRQTCMNLLRAKLYAYYEEQRQKETAKFGAEKKDISWGNQIRSYVFQPYTMVKDNRTKFS 341
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D +V+DG+I FI++ + ++
Sbjct: 342 VGDIQAVMDGDIDQFIDSFLQAQ 364
>gi|334139368|ref|ZP_08512760.1| peptide chain release factor 2 [Paenibacillus sp. HGF7]
gi|333602181|gb|EGL13612.1| peptide chain release factor 2 [Paenibacillus sp. HGF7]
Length = 333
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 9/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +++ +L VV+ + L + E+ ++AQLA+ E D +
Sbjct: 7 DFWDDNEKAQKIIGELNAIKSVVDQFQALNNEYEDLDVMAQLADEEN-DEDMAAELADGL 65
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V + L+ +++ LL P D A + + G+ G + WAE LL MY RWA+K ++
Sbjct: 66 KGVLRKLEDFQLQLLLNQPYDRLNAILELHPGAGGTESQDWAEMLLRMYRRWAEKRDFKV 125
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D GVKS T+ + A+GYL E G H L+ F H + ++C DV
Sbjct: 126 EVLDYLPGDEAGVKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-DV 184
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP +E ++ I EDL + + G+ + A I H+PTG+ V ER+
Sbjct: 185 VPE-IEDDVEVDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGVVVTCQTERSQI 243
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L++KL E+ +++ I+ E W + R YV HPY +V+D +T
Sbjct: 244 KNRERAMKHLRSKLYEKKIEEQEKHLAEIRGEQSDIAWGSQIRSYVFHPYSMVKDHRTTE 303
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ + +V+DG++ PFI+A++
Sbjct: 304 ETGNVGAVMDGDLDPFIDAYL 324
>gi|312142853|ref|YP_003994299.1| peptide chain release factor 2 [Halanaerobium hydrogeniformans]
gi|311903504|gb|ADQ13945.1| peptide chain release factor 2 [Halanaerobium hydrogeniformans]
Length = 346
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 159/322 (49%), Gaps = 14/322 (4%)
Query: 7 LWDDPTKS---NEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD + ++ L KL LKV++ L++ K +E ++ QLA E + L + +
Sbjct: 25 FWDDKENARHKSQRLDKLKKRLKVISELEE---KFDEIEIYQQLAAEEGEN--LREELEQ 79
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + K LD E+ L P D A ++I G+ G + WAE LL MY RWA+ GY
Sbjct: 80 SFSQLEKKLDNLELKLRLNEPYDDHNAILSIHPGAGGTESQDWAEMLLRMYRRWAESSGY 139
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ ++ GVKS T+ +YAFGYL GE G H L+ + S + A VD
Sbjct: 140 QLETLEFSAGDEAGVKSVTLLISGDYAFGYLKGERGVHRLVRISPFDSSGRRHTSFASVD 199
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ ++ I + DL + + G+ + A I H PTG+ VQ +R+
Sbjct: 200 VLPE-LDDELEVDIDENDLRIETYRASGAGGQHVNKTDSAVRITHQPTGVVVQCQSQRSQ 258
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L +KLL + E + ++ E W + R YV HPY +++D +T
Sbjct: 259 HKNKNVAMKILSSKLLELKEEAQAEKIEDLRGEHKEIAWGSQIRSYVLHPYNMIKDHRTD 318
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
+ + + VLDG + FIE ++
Sbjct: 319 FEEGNVDKVLDGYLDEFIEEYL 340
>gi|262203335|ref|YP_003274543.1| peptide chain release factor 2 [Gordonia bronchialis DSM 43247]
gi|262086682|gb|ACY22650.1| peptide chain release factor 2 [Gordonia bronchialis DSM 43247]
Length = 371
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 170/326 (52%), Gaps = 11/326 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID--YGLFKRAYR 63
+LW+D + +V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDQEHAQKVTSELSHAQSEFRKVSELRQRLDDLPVLYELAEAEEGDDRVSALADADA 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ E+ +L G D A V I++G+ G+ WA L+ MY+RWA++ GY
Sbjct: 103 DRAALRADIEAMEVKTMLAGEYDQRDALVNIRSGAGGVDAADWALMLMRMYIRWAEQHGY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT + Y +G LS E G H L+ F N S + + A V
Sbjct: 163 GVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ ++T+ + I + D+ ++ S G+ + A + H+PTGI V E++
Sbjct: 222 EVLPV-VQTTDHIDIDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHLPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKASAMRVLQAKLLERKRQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
G++ + ++VLDG + FIEA I R
Sbjct: 340 GVEDNNPSAVLDGELDKFIEAGIRWR 365
>gi|422012230|ref|ZP_16358943.1| peptide chain release factor 2 [Actinomyces georgiae F0490]
gi|394759088|gb|EJF41890.1| peptide chain release factor 2 [Actinomyces georgiae F0490]
Length = 372
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 173/329 (52%), Gaps = 14/329 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRA 64
+LWDDP ++ EV L+ ++ + + + ++ + + ++A E + A
Sbjct: 43 DLWDDPARAQEVTSALSHRQSELDRVVRMGERIDDLEAMVEMAGEDPDEAEEILAEAAAD 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K + E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LEALKKDVSDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHGYP 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+PL +E++ ++I + +L +F S G+ + A + HIPTGI V E++
Sbjct: 223 IPL-IESTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKSQI 281
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVK 296
N+ AL L+++LLV+ E+ + K+E ++ W + R YV PY++V+D++
Sbjct: 282 QNRAAALRVLQSRLLVLRHEEEQAK----KKELAGDVKASWGDQMRSYVLQPYQMVKDLR 337
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T + + +V DG+I FI A I R++
Sbjct: 338 TEFESGNPQAVFDGDIDGFINAGIRWRKN 366
>gi|307705242|ref|ZP_07642109.1| peptide chain release factor 2 [Streptococcus mitis SK597]
gi|307621191|gb|EFO00261.1| peptide chain release factor 2 [Streptococcus mitis SK597]
Length = 325
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFQKMEELQDEVE--ILLDFLAEDESVHEELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|158321505|ref|YP_001514012.1| peptide chain release factor 2 [Alkaliphilus oremlandii OhILAs]
gi|158141704|gb|ABW20016.1| peptide chain release factor 2 [Alkaliphilus oremlandii OhILAs]
Length = 340
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 159/320 (49%), Gaps = 8/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP + VL K + L E+ +++ ++ +E D K +
Sbjct: 16 DFWNDPENAQSVLKKAKGYRDTIEEYNQLHVDHEDLEMM--ISFIEDGDESFQKDLLKGL 73
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +++ LL+G D A ++I AG+ G+ + WA+ LL MY RWA+ +GY
Sbjct: 74 EALENRVREIKIATLLKGEYDKNNAIISIHAGTGGLDAQDWAKMLLRMYTRWAEDKGYGV 133
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ +D G+KS T+ E A+GYL E G H L+ + S + A VDV+
Sbjct: 134 KTLDILTDTEAGIKSVTLLIEGMNAYGYLKAEKGVHRLVRISPFDSSGKRHTSFASVDVM 193
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ S D+QI+ DL + + G+ + A I HIPTGI VQ ER+ +
Sbjct: 194 P-EIDDSVDIQINPNDLRIDTYRASGSGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHS 252
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L +KL+ + + + ++ E W + R YV +PY LV+D +T ++
Sbjct: 253 NRETAMKMLISKLIEVKETEQKEKIEDLQGEYNQIAWGSQIRSYVFNPYNLVKDHRTNVE 312
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ + +V+DG I FI ++
Sbjct: 313 MGNIQAVMDGEIDEFINGYL 332
>gi|338814372|ref|ZP_08626393.1| peptide chain release factor 2 [Acetonema longum DSM 6540]
gi|337273694|gb|EGO62310.1| peptide chain release factor 2 [Acetonema longum DSM 6540]
Length = 335
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 7/324 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + +V+ +L +R + E+ + + +L M+ D ++ A
Sbjct: 10 FWDEPVGAQKVMQELTGLKDTAADYYAMRRRYEDMETLWRLG-MDEKDESVYSDVTEAMQ 68
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++ E++ +L G D A VT+ AG+ G + WA+ LL MYVRWA+K+G+
Sbjct: 69 QLQAEIEHLELTLMLSGEYDANNAIVTLHAGAGGTEAQDWAQMLLRMYVRWAEKQGFTVD 128
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKSAT+ A+GYL E G H L+ + S + A VD++P
Sbjct: 129 TLDFLAGDEAGVKSATLLISGRNAYGYLRSEKGVHRLVRISPFDASGRRHTSFAAVDIMP 188
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ + ++ I+ DL + + G+ + A + HIPTGI VQ ER+ N
Sbjct: 189 E-IDENVEIAINPADLKVDTYRASGAGGQHINKTDSAVRMTHIPTGIIVQCQNERSQIQN 247
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ + + L+A+L + + + I E W + R YV HPY L +D +T +
Sbjct: 248 REQCMKLLRARLFELEQRKQAEKKAEIGGEYQAIEWGSQIRSYVFHPYSLAKDHRTNCET 307
Query: 302 PDFNSVLDGNIKPFIEAHINSRRS 325
+ +V+DG ++ FIEA++ ++
Sbjct: 308 GNIQAVMDGELEAFIEAYLKGLKT 331
>gi|408401329|ref|YP_006859292.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|417753647|ref|ZP_12401752.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417928881|ref|ZP_12572269.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|333769251|gb|EGL46388.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|340766755|gb|EGR89281.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|407967557|dbj|BAM60795.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 331
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 166/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + ++ KL + +++ ++E +L ++ E + K AS
Sbjct: 9 DFWNDNIAAQKISQKLNELKSTYETFHNMQELSDETELYLEMLEED----DSVKDDLEAS 64
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 65 LETLGQILASYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 124
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ FE A+G+L E G H L+ F + H + V+
Sbjct: 125 VETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFVSVE 183
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 184 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQ 242
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + E+ + V+ +K + W + R YV PY +V+D +T
Sbjct: 243 YGNRDRAIKMLQAKLYQLEQEKKAAEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 302
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I+ FI+A++ R S D
Sbjct: 303 YEVAQVDKVMDGDIEGFIDAYLKWRMSDD 331
>gi|384564721|ref|ZP_10011825.1| peptide chain release factor 2 [Saccharomonospora glauca K62]
gi|384520575|gb|EIE97770.1| peptide chain release factor 2 [Saccharomonospora glauca K62]
Length = 368
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + L +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDPEAAQKVTSQLSHKQASLRRLTELRQRVDDLAVLHELAEAEG-DAASRSEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+VS+ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AEVSREVDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 162 EVYDISYAEEAGIRSATFKVSGPYLYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 221
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+ V D+++ ++ S G+ + A I H+PTGI V E++
Sbjct: 222 PEVEEVDHVEIPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+AKLL E+ + ++ + W + R YV HPY+LV+D++T
Sbjct: 278 QLQNKASAMKVLQAKLLQRKKEEERKELDALRDSG--SSWGNQMRSYVLHPYQLVKDLRT 335
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++VLDG + F++A I R+
Sbjct: 336 DYEVGNPSAVLDGELDGFLDAGIRWRK 362
>gi|386316650|ref|YP_006012814.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494413|ref|YP_006904259.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|323126937|gb|ADX24234.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410439573|emb|CCI62201.1| Peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 327
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 166/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + ++ KL + +++ ++E +L ++ E + K AS
Sbjct: 5 DFWNDNIAAQKISQKLNELKSTYETFHNMQELSDETELYLEMLEED----DSVKDDLEAS 60
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 61 LETLGQILASYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 120
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ FE A+G+L E G H L+ F + H + V+
Sbjct: 121 VETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFVSVE 179
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 180 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQ 238
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + E+ + V+ +K + W + R YV PY +V+D +T
Sbjct: 239 YGNRDRAIKMLQAKLYQLEQEKKAAEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 298
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I+ FI+A++ R S D
Sbjct: 299 YEVAQVDKVMDGDIEGFIDAYLKWRMSDD 327
>gi|419860362|ref|ZP_14383006.1| peptide chain release factor 2 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387983171|gb|EIK56662.1| peptide chain release factor 2 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 369
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 103 LAAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 161 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 221 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 280 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 339 VNDPQKVLDGDIDGLLEAGIRWR 361
>gi|425737695|ref|ZP_18855966.1| peptide chain release factor RF-2, major part [Staphylococcus
massiliensis S46]
gi|425481352|gb|EKU48512.1| peptide chain release factor RF-2, major part [Staphylococcus
massiliensis S46]
Length = 339
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 160/328 (48%), Gaps = 6/328 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ E++ K VVNA DL + E+ +L + E D +
Sbjct: 1 MMAEPDFWDNQQKAQEIIDKNNALKSVVNAYHDLNNEIEDLDATYELLQ-EEYDEDMKDD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + + +D +E+ LL G +D A + + G+ G + W LL MY R+A+
Sbjct: 60 LEESVVALDDKIDDFELQLLLNGEHDANNAILELHPGAGGTESQDWTSMLLRMYQRYAED 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 AGFKVEVTDYLPGDEAGVKSVTMIIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F ++ I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 180 SCDVIPEFNNDEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL E+ S ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQQEIERQESELAAIRGEQKEIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T + + + V+DG+I PFI A++ S+
Sbjct: 300 RTNEETGNTSKVMDGDIGPFINAYLRSQ 327
>gi|376248040|ref|YP_005139984.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC04]
gi|372114608|gb|AEX80666.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC04]
Length = 405
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 63 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 122
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 123 LAAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 180
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 181 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 240
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 241 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 299
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 300 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 358
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 359 VNDPQKVLDGDIDGLLEAGIRWR 381
>gi|55821157|ref|YP_139599.1| peptide chain release factor 2 [Streptococcus thermophilus LMG
18311]
gi|55823068|ref|YP_141509.1| peptide chain release factor 2 [Streptococcus thermophilus
CNRZ1066]
gi|116627872|ref|YP_820491.1| peptide chain release factor 2 [Streptococcus thermophilus LMD-9]
gi|55737142|gb|AAV60784.1| peptide chain release factor 2 [Streptococcus thermophilus LMG
18311]
gi|55739053|gb|AAV62694.1| peptide chain release factor 2 [Streptococcus thermophilus
CNRZ1066]
gi|116101149|gb|ABJ66295.1| bacterial peptide chain release factor 2 (bRF-2) [Streptococcus
thermophilus LMD-9]
Length = 337
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 167/327 (51%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +K+L ++E +L ++ E D + +
Sbjct: 16 DFWNDNIAAQKTSQELNELKMKYETFNNMKEL---SDETELYLEMLEE---DDSVQEELE 69
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WAE LL MY R+ + +G
Sbjct: 70 ETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWAEMLLRMYQRYGNAKG 129
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 130 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 188
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 189 VEVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 247
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 248 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 307
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I+ FI+A++ R
Sbjct: 308 TGYEVAQVDKVMDGDIEGFIDAYLKWR 334
>gi|182419781|ref|ZP_02951021.1| peptide chain release factor 2 [Clostridium butyricum 5521]
gi|237666525|ref|ZP_04526510.1| peptide chain release factor 2 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182376329|gb|EDT73911.1| peptide chain release factor 2 [Clostridium butyricum 5521]
gi|237657724|gb|EEP55279.1| peptide chain release factor 2 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 347
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 148/319 (46%), Gaps = 8/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV K + L+ + ++ ++ + E + I+ +
Sbjct: 28 FWDDSKKAEEVTKKSKLIKDKIENYDKLKSQLDDIDVLKDIMEEDDIESA--NEIIQTIK 85
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++ Y M LL G D A VT+ G G W E LL MY RW + +GY
Sbjct: 86 SIEHEIEDYNMKILLSGEYDKNNAIVTLHVGVGGTDANDWTEMLLRMYTRWCENKGYSVE 145
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EY +GYL E G H L+ N + + + A ++V+P
Sbjct: 146 TIDLIAGDEAGIKSVTLKVTGEYVYGYLKAEKGIHRLVRISPYNANGKRQTSFASMEVLP 205
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L D+ I +DL + S G+ + A I HIPTGI VQ ER+ F+N
Sbjct: 206 -ELTKEQDITIRPDDLKVDTYRSSGSGGQHINKTDSAVRITHIPTGIVVQCQNERSQFSN 264
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 265 RETAMEMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 324
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ N V+DG+I FI A +
Sbjct: 325 SNVNGVMDGDIDLFINAFL 343
>gi|56421641|ref|YP_148959.1| peptide chain release factor 2 [Geobacillus kaustophilus HTA426]
gi|56381483|dbj|BAD77391.1| peptide chain release factor 2 in translation [Geobacillus
kaustophilus HTA426]
Length = 327
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 168/325 (51%), Gaps = 11/325 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
N WDD KS + ++ A++LK +V L + + ++ +L + E D L
Sbjct: 5 NFWDD-QKSAQAVISEANALKDLVEEFSSLEERFDNLEVTYELLKEEPDD-ELQAELVEE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ + K ++E+ LL P D A + + G+ G + WA LL MY RWA+K+G++
Sbjct: 63 AKKLMKDFSEFELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
VVP L+ + +++I E+L + S G+ + A I H+PTGI V ER+
Sbjct: 182 VVPE-LDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQSERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ KA+N LKAKL E+ + ++ ++ E W + R YV HPY LV+D +T
Sbjct: 241 IKNREKAMNMLKAKLYQKKLEEQQAELAELRGEQKEIGWGNQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
+++ + +V+DG I FI+A++ ++
Sbjct: 301 VEVGNVQAVMDGEIDVFIDAYLRAK 325
>gi|366086467|ref|ZP_09452952.1| peptide chain release factor 2 [Lactobacillus zeae KCTC 3804]
Length = 332
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 155/326 (47%), Gaps = 21/326 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDL--RYKAEEAKLIAQLAEMEAI----DYGLFKR 60
WDD + +V+ NALK+ R+ A E +L A +E + D L
Sbjct: 6 FWDDSEAAQKVI-------DANNALKEKHDRFYALENELEDLEAGLELLQDEPDVDLQHE 58
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D+ LD YEM LL GP D A + I G+ G + W L+ MY RWAD+
Sbjct: 59 EETKIKDLQDKLDHYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQ 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G++ V D G+KS T+ E A+G L E G H L+ F + H +
Sbjct: 119 NGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRH-TSF 177
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A VDV+P L+ S + I ED+ +F S G+ + A + HIPTGI S
Sbjct: 178 ASVDVMPE-LDNSIQVDIRPEDVKMEVFRSSGAGGQHINKTSSAVRLIHIPTGIVTSSQA 236
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
+R+ F NK A+ LKAKL E + I+ E + + R YV HPY +V+D
Sbjct: 237 QRSQFQNKATAMAMLKAKLYQREEEAKRAKAKAIQGEQKDVAFGSQIRSYVFHPYTMVKD 296
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + + N+V+DG++ PFI A++
Sbjct: 297 HRTNYETGNGNAVMDGDLNPFINAYL 322
>gi|222152785|ref|YP_002561962.1| peptide chain release factor 2 [Streptococcus uberis 0140J]
gi|254790921|sp|B9DRN6.1|RF2_STRU0 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|222113598|emb|CAR41450.1| peptide chain release factor 2 [Streptococcus uberis 0140J]
Length = 366
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL-IAQLAEMEAIDYGLFKRAYRA 64
+ W+D + + +L D+ ++E +L + LAE E+I L A
Sbjct: 44 DFWNDNIAAQKTSQELNTLKSTFETFHDMLELSDETELYLEMLAEDESIKEEL----EEA 99
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ + ++L QYEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 100 LVKLEQILSQYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ FE A+G+L E G H L+ F + H + V+
Sbjct: 160 VETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTSVE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 219 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +T
Sbjct: 278 YGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 337
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG I FI+A++ R D
Sbjct: 338 FEVAQVDKVMDGEIDGFIDAYLKWRMGDD 366
>gi|255987637|ref|YP_001884728.2| peptide chain release factor 2 [Clostridium botulinum B str. Eklund
17B]
gi|255961470|gb|ACD21926.2| peptide chain release factor 2 [Clostridium botulinum B str. Eklund
17B]
Length = 325
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 161/324 (49%), Gaps = 14/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D ++ E+ + + ++ +R K ++ +++ ++ +D + AY
Sbjct: 6 FWNDTKRAEEITKESKRIKDKIQRVESVRSKLDDIEVLKEI-----MDDDDEESAYEIIN 60
Query: 67 DVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ ++ +D Y M LL G D A +T+ G G W E LL MY RW +K+ Y
Sbjct: 61 NIKEIEEEIDNYNMEILLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKKNY 120
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ ++D G+KS T++ EYA+GYL E G H L+ N + + + A ++
Sbjct: 121 KVEMIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFASME 180
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L D+ I ED+ + + G+ + A I H+PTG+ VQ ER+
Sbjct: 181 VLP-ELTKEQDIDIRSEDIKIDTYRASGAGGQHINKTDSAVRITHLPTGVVVQCQNERSQ 239
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
F+NK A+ LKAKL+ + + + E W + R YV HPY LV+D +T
Sbjct: 240 FSNKDTAMGMLKAKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHRTN 299
Query: 299 IQLPDFNSVLDGNIKPFIEAHINS 322
+++ + +V+DG++ F+ +++ S
Sbjct: 300 VEVSNVTAVMDGDLDLFVNSYLKS 323
>gi|375010251|ref|YP_004983884.1| peptide chain release factor 2 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359289100|gb|AEV20784.1| Peptide chain release factor 2 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 327
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA---- 61
N WDD + V+ + VNALKDL EE + + + + Y L K
Sbjct: 5 NFWDDQKAAQAVISE-------VNALKDL---VEEFSSLEERFDNLEVTYELLKEEPDDE 54
Query: 62 YRASL--DVSKLL---DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+A L + KL+ ++E+ LL P D A + + G+ G + WA LL MY R
Sbjct: 55 LQAELVEEAKKLMKDFSEFELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTR 114
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPH 173
WA+K+G++ +D + G+KS T+ + A+GYL E G H L+ F H
Sbjct: 115 WAEKKGFKVETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRH 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ ++C +VVP ++ + +++I E+L + S G+ + A I H+PTGI V
Sbjct: 175 TSFVSC-EVVPE-MDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVV 232
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ N+ KA+N LKAKL E+ + ++ ++ E W + R YV HPY
Sbjct: 233 TCQSERSQIKNREKAMNMLKAKLYQKKLEEQQAELAELRGEQKEIGWGNQIRSYVFHPYS 292
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
LV+D +T +++ + +V+DG I FI+A++ ++
Sbjct: 293 LVKDHRTNVEVGNVQAVMDGEIDVFIDAYLRAK 325
>gi|422324518|ref|ZP_16405555.1| peptide chain release factor 2 [Rothia mucilaginosa M508]
gi|353344040|gb|EHB88353.1| peptide chain release factor 2 [Rothia mucilaginosa M508]
Length = 375
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 177/330 (53%), Gaps = 15/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDD + +V L+ +N L+ L + ++ +++ +LAE E + L A R
Sbjct: 44 DLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVELAEAEDEETAAELLADAER 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 104 ECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+
Sbjct: 164 PTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E + ++I + ++ +F S G+ + A + H+PTGI V E++
Sbjct: 224 VIPL-IEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQ 282
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ AL L+++LL++ EQ K+E +I W + R YV HPY++V+D+
Sbjct: 283 LQNRAAALRVLQSRLLLLRKEQE----DAKKKELAGDIKASWGDQMRSYVLHPYQMVKDL 338
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+TG + + ++VLDG + FI+A I R S
Sbjct: 339 RTGYEEGNTSNVLDGGLNAFIDAGIRWRAS 368
>gi|257066737|ref|YP_003152993.1| peptide chain release factor 2 [Anaerococcus prevotii DSM 20548]
gi|256798617|gb|ACV29272.1| bacterial peptide chain release factor 2 (bRF- 2) [Anaerococcus
prevotii DSM 20548]
Length = 367
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 160/322 (49%), Gaps = 9/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGLFKRAYRA 64
+ W+D K+ +++ LA ++ K L + + L EM E + + +
Sbjct: 45 DFWNDSDKAQKIMADLASKKDELSDYKKLENGLVDNTDMLDLVEMSEEKETDTIEEVEDS 104
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++KL Q ++ L G D A ++I AG+ G+ WA+ L MY R+ D G++
Sbjct: 105 LKNLAKLATQMKLRTQLDGEYDKNNAYISINAGAGGLEATDWADMLFRMYKRYFDSIGFK 164
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+ D + GG+KSAT+ YA+GYL E G H L+ F + S H + A VD
Sbjct: 165 YEIKDLNNEEAGGIKSATMHVTGPYAYGYLKAEKGVHRLVRISPFDSQSRRH-TSFASVD 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V P L+ + +L I DL + + G+ + A I HIPTG+ S ER+
Sbjct: 224 VFPE-LDENIELDIDPSDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGVVATSQAERSQ 282
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+N LK+KL+ I E+ + I+ W + R YV PY LV+D +TG
Sbjct: 283 IQNRQTAMNLLKSKLVQIKEEEQREKIEDIQGSYSQIAWGSQIRSYVFQPYTLVKDHRTG 342
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
++ + +V+DG+I+ FI+A +
Sbjct: 343 FEMGNVEAVMDGDIQGFIDAFL 364
>gi|158425248|ref|YP_001526540.1| peptide chain release factor 2 [Azorhizobium caulinodans ORS 571]
gi|158332137|dbj|BAF89622.1| peptide chain release factor 2 [Azorhizobium caulinodans ORS 571]
Length = 376
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 166/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVL---VKLADSLKVVNAL-KDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
LWDDP ++ +++ L D+L ++ + +DL E + +L E E D + A
Sbjct: 43 TLWDDPERAQKIMQERTSLEDALNAIDRITRDLTDNIE----LIELGEAEG-DESVITEA 97
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A + L + E+ LL G D + + AG+ G + WAE LL MY RW ++
Sbjct: 98 AGALDALKAELARRELDALLSGEADSNDTYLEVHAGAGGTDSQDWAEMLLRMYRRWCERH 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
G++ +VD+ + G+KSATI + A+G+L E G H L+ + + + + A
Sbjct: 158 GFKVELVDESAGEQAGLKSATIIVKGHNAYGWLKTEAGVHRLVRISPFDSNARRQTSFAS 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
+DV P+ ++ ++I++ D+ S G+ + + A + HIPTGIAV S G+R
Sbjct: 218 IDVYPV-IDDRIVVEINESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGIAVVSQGDR 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ A N L+AKL + ++ + + W + R YV PY+LV+D++
Sbjct: 277 SQHKNRATAWNMLRAKLFEMELKKREEAAAAEQAARTDIGWGHQIRSYVLQPYQLVKDLR 336
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG+ VLDG++ PF+EA + R
Sbjct: 337 TGVTSGTPQEVLDGDLDPFMEAALAQR 363
>gi|317133128|ref|YP_004092442.1| peptide chain release factor 2 [Ethanoligenens harbinense YUAN-3]
gi|315471107|gb|ADU27711.1| peptide chain release factor 2 [Ethanoligenens harbinense YUAN-3]
Length = 377
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 159/322 (49%), Gaps = 7/322 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D S VL K + + + LR K ++ + +LA+ E D + A A
Sbjct: 48 DFWNDIENSQSVLQKTRQLKDKIASYEALRRKTDDTLALIELADEEE-DLSVLAEAAEAV 106
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V +D ++ LL G D + A +T AG+ G + WAE L MY RWA++ G+
Sbjct: 107 DSVRAQIDTMRLATLLTGEYDAKNAILTFHAGAGGTEAQDWAEMLYRMYTRWAERHGFNV 166
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSA++ E A+GYL E G H L+ + S + A V+V+
Sbjct: 167 QVLDYLDGEEAGLKSASVLIEGLNAYGYLKSEIGVHRLVRVSPFDSSGRRHTSFASVEVM 226
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ S ++ I ED+ +F S G+ + A + H+PTGI V ER+
Sbjct: 227 P-EIDDSIEVDIRPEDIKMDVFRSSGAGGQHINKTSSAVRLTHLPTGIVVSCQNERSQHQ 285
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL+ I + + IK W + R YV PY LV+D +T +
Sbjct: 286 NREMAMRMLKSKLVEIKEREHYDKIEDIKGVQKEIAWGSQIRSYVFMPYTLVKDHRTSFE 345
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
+ +V+DG++ FI A++ +
Sbjct: 346 SGNIGAVMDGDLDGFINAYLKA 367
>gi|27467454|ref|NP_764091.1| peptide chain release factor 2 [Staphylococcus epidermidis ATCC
12228]
gi|251810188|ref|ZP_04824661.1| peptide chain release factor 2 [Staphylococcus epidermidis
BCM-HMP0060]
gi|293368216|ref|ZP_06614845.1| peptide chain release factor RF2 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|420222336|ref|ZP_14727257.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH08001]
gi|420225262|ref|ZP_14730096.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH06004]
gi|420226664|ref|ZP_14731443.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05003]
gi|420228984|ref|ZP_14733695.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04003]
gi|420231341|ref|ZP_14735993.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051668]
gi|420233980|ref|ZP_14738554.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051475]
gi|421607645|ref|ZP_16048883.1| peptide chain release factor 2 [Staphylococcus epidermidis AU12-03]
gi|27314997|gb|AAO04133.1|AE016745_232 peptide chain release factor RF-2 [Staphylococcus epidermidis ATCC
12228]
gi|251806240|gb|EES58897.1| peptide chain release factor 2 [Staphylococcus epidermidis
BCM-HMP0060]
gi|291317639|gb|EFE58056.1| peptide chain release factor RF2 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|394289388|gb|EJE33272.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH08001]
gi|394293817|gb|EJE37519.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH06004]
gi|394298280|gb|EJE41857.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05003]
gi|394299667|gb|EJE43202.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04003]
gi|394302907|gb|EJE46341.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051668]
gi|394304673|gb|EJE48069.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051475]
gi|406656696|gb|EKC83097.1| peptide chain release factor 2 [Staphylococcus epidermidis AU12-03]
Length = 332
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 6/326 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F +++I+ +D+ F + G+ + + A I H PTGI V + ER+
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIK 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +++D +T +
Sbjct: 244 NREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMIKDHRTNEE 303
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSS 326
++V+DG I PFIEA++ S
Sbjct: 304 TGKVDAVMDGEIGPFIEAYLRKEMDS 329
>gi|157693929|ref|YP_001488391.1| peptide chain release factor RF2 [Bacillus pumilus SAFR-032]
gi|157682687|gb|ABV63831.1| peptide chain release factor RF2 [Bacillus pumilus SAFR-032]
Length = 327
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 165/327 (50%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D K+ V + A++LK VNA +L EE ++ L + E D L +
Sbjct: 5 DFWNDQQKAQGV-INEANALKDNVNAYHELSESHEELQMTHDLLK-EDYDEELHVELEKE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKNLTKQFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F E D+ I ED+ + + G+ + A I HIPT + V ER+
Sbjct: 182 VMPEFNE-EIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHIPTNVVVTCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+ LK+KL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 241 IKNRERAMKMLKSKLYQRRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + +V+DG++ FI+A++ S+ S
Sbjct: 301 TEMGNVQAVMDGDLDSFIDAYLRSKLS 327
>gi|255327042|ref|ZP_05368118.1| peptide chain release factor 2 [Rothia mucilaginosa ATCC 25296]
gi|255296259|gb|EET75600.1| peptide chain release factor 2 [Rothia mucilaginosa ATCC 25296]
Length = 375
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 177/330 (53%), Gaps = 15/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDD + +V L+ +N L+ L + ++ +++ +LAE E + L A R
Sbjct: 44 DLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVELAEAEDEETAAELLADAER 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 104 ECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+
Sbjct: 164 PTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E + ++I + ++ +F S G+ + A + H+PTGI V E++
Sbjct: 224 VIPL-IEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQ 282
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ AL L+++LL++ EQ K+E +I W + R YV HPY++V+D+
Sbjct: 283 LQNRAAALRVLQSRLLLLRKEQE----DAKKKELAGDIKASWGDQMRSYVLHPYQMVKDL 338
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+TG + + ++VLDG + FI+A I R S
Sbjct: 339 RTGYEEGNTSNVLDGGLNAFIDAGIRWRAS 368
>gi|386344808|ref|YP_006040972.1| peptide chain release factor 2 [Streptococcus thermophilus JIM
8232]
gi|339278269|emb|CCC20017.1| peptide chain release factor 2 [Streptococcus thermophilus JIM
8232]
Length = 337
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 167/327 (51%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +K+L ++E +L ++ E D + +
Sbjct: 16 DFWNDNIAAQKTSQELNELKMKYETFNNMKEL---SDETELYLEMLEE---DDSVQEELE 69
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WAE LL MY R+ + +G
Sbjct: 70 ETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWAEMLLRMYQRYGNAKG 129
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 130 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 188
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 189 VEVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 247
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 248 TQYGNRDRAMKMLQAKLYQMDQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 307
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I+ FI+A++ R
Sbjct: 308 TGYEVAQVDKVMDGDIEGFIDAYLKWR 334
>gi|315641246|ref|ZP_07896323.1| peptide chain release factor RF2 [Enterococcus italicus DSM 15952]
gi|315483013|gb|EFU73532.1| peptide chain release factor RF2 [Enterococcus italicus DSM 15952]
Length = 340
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 166/322 (51%), Gaps = 7/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + +V+ + + + + +L + EE +++ ++ + E D + A RAS
Sbjct: 17 FWDDTQSAQKVINENNSNKEAFDQFHELADELEELEVLLEMIQEEPDDEMEQELATRASE 76
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K+ YE++ LL GP D A + + G+ G + W LL MY RWADK G++
Sbjct: 77 LLGKM-SAYELAMLLDGPYDHNNAIIELHPGAGGTESQDWGSMLLRMYQRWADKRGFQVE 135
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVVP 184
+D G+KS T+ + AFGYL E G H L+ P S T C VDV+P
Sbjct: 136 TLDYLPGDEAGIKSVTLLIKGRNAFGYLKSEKGVHRLVRISPFDSANRRHTSFCSVDVMP 195
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L+ + D++I+ +DL + + G+ + + A I HIPTG V S +R+ N
Sbjct: 196 E-LDDTIDIEINSDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKN 254
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ +A+ LKAKL + E+ + ++ E + W + R YV HPY +V+D +T +
Sbjct: 255 REQAMGMLKAKLYQLEVEKQEQEAAALRGEQMEIGWGSQIRSYVFHPYSMVKDHRTNFET 314
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ +V+DG+I FI+A++ +
Sbjct: 315 GNVQAVMDGDIDGFIDAYLKQK 336
>gi|445378412|ref|ZP_21426764.1| peptide chain release factor 2 [Streptococcus thermophilus MTCC
5460]
gi|445392626|ref|ZP_21428488.1| peptide chain release factor 2 [Streptococcus thermophilus MTCC
5461]
gi|444749549|gb|ELW74442.1| peptide chain release factor 2 [Streptococcus thermophilus MTCC
5461]
gi|444749743|gb|ELW74627.1| peptide chain release factor 2 [Streptococcus thermophilus MTCC
5460]
Length = 326
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 167/327 (51%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +K+L ++E +L ++ E D + +
Sbjct: 5 DFWNDNIAAQKTSQELNELKMKYETFNNMKEL---SDETELYLEMLEE---DDSVQEELE 58
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WAE LL MY R+ + +G
Sbjct: 59 ETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWAEMLLRMYQRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 119 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 178 VEVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I+ FI+A++ R
Sbjct: 297 TGYEVAQVDKVMDGDIEGFIDAYLKWR 323
>gi|427414371|ref|ZP_18904561.1| peptide chain release factor 2 [Veillonella ratti ACS-216-V-Col6b]
gi|425714747|gb|EKU77750.1| peptide chain release factor 2 [Veillonella ratti ACS-216-V-Col6b]
Length = 330
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 161/319 (50%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+DP + E+ + V K L + E+ KL+ ++A ++ D + +
Sbjct: 6 FWNDPDSAKEISQEATQLKDAVEGYKALVSEIEDLKLMLEMA-IDEQDVSMESELKTSVE 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ +++ E+ LL G D A +T AG+ G + W L+ MY+RWA++ G+
Sbjct: 65 HITEEVERREVLLLLSGEYDTNNAILTFHAGAGGTEAQDWVSMLIRMYLRWAEQHGFAIT 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D+ G+KSAT + E AFGYL E G H L+ + + + A VDV+P
Sbjct: 125 MMDEQPGDEAGIKSATFLIKGENAFGYLKSEKGVHRLVRISPFDANARRHTSFAAVDVMP 184
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVQSLGERNHFAN 241
++ + D+ + +D+ + G Q I K + I+ HIPTG+ VQ ER+ N
Sbjct: 185 E-IDDTVDIHLDMKDVRVDTYRASGAGGQHINKTDSAIRMTHIPTGVVVQCQSERSQIQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ +AL L+AKL + E+ I W + R YV HPY LV+D +TG++
Sbjct: 244 REQALKLLRAKLFELELEKQAELKEKIGGTYQAIEWGSQIRSYVFHPYNLVKDHRTGVET 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ SV+DGN+ F+E ++
Sbjct: 304 GNIQSVMDGNLDAFMEGYL 322
>gi|118090032|ref|YP_873927.1| peptide chain release factor 2 [Streptococcus pneumoniae TIGR4]
gi|123517990|sp|Q2MGI2.1|RF2_STRPN RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|85720582|gb|ABC75805.1| peptide chain release factor 2, programmed frameshift
[Streptococcus pneumoniae TIGR4]
Length = 364
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 44 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 99
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 100 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 157
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 158 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 216
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 217 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 275
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + ++ + V +K E W + R YV PY +V+D +
Sbjct: 276 TQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 336 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 364
>gi|418193392|ref|ZP_12829885.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47439]
gi|353860115|gb|EHE40062.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47439]
Length = 325
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ Y+M+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYDMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|111658353|ref|ZP_01409041.1| hypothetical protein SpneT_02000493 [Streptococcus pneumoniae
TIGR4]
gi|148997169|ref|ZP_01824823.1| peptide chain release factor 2 [Streptococcus pneumoniae SP11-BS70]
gi|149010619|ref|ZP_01831990.1| peptide chain release factor 2 [Streptococcus pneumoniae SP19-BS75]
gi|221231551|ref|YP_002510703.1| peptide chain release factor 2 [Streptococcus pneumoniae ATCC
700669]
gi|298502540|ref|YP_003724480.1| peptide chain release factor RF2 [Streptococcus pneumoniae
TCH8431/19A]
gi|387626132|ref|YP_006062304.1| peptide chain release factor 2 [Streptococcus pneumoniae INV104]
gi|410476198|ref|YP_006742957.1| peptide chain release factor 2 [Streptococcus pneumoniae
gamPNI0373]
gi|417312326|ref|ZP_12099040.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04375]
gi|417686197|ref|ZP_12335475.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41301]
gi|417693681|ref|ZP_12342870.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47901]
gi|417698178|ref|ZP_12347351.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41317]
gi|418082631|ref|ZP_12719833.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44288]
gi|418084827|ref|ZP_12722013.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47281]
gi|418093595|ref|ZP_12730724.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49138]
gi|418100485|ref|ZP_12737573.1| peptide chain release factor 2 [Streptococcus pneumoniae 7286-06]
gi|418118691|ref|ZP_12755649.1| peptide chain release factor 2 [Streptococcus pneumoniae GA18523]
gi|418120832|ref|ZP_12757778.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44194]
gi|418123019|ref|ZP_12759954.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44378]
gi|418127606|ref|ZP_12764502.1| peptide chain release factor 2 [Streptococcus pneumoniae NP170]
gi|418129922|ref|ZP_12766806.1| peptide chain release factor 2 [Streptococcus pneumoniae GA07643]
gi|418136776|ref|ZP_12773619.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11663]
gi|418141353|ref|ZP_12778166.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13455]
gi|418148186|ref|ZP_12784951.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13856]
gi|418150916|ref|ZP_12787663.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14798]
gi|418152492|ref|ZP_12789232.1| peptide chain release factor 2 [Streptococcus pneumoniae GA16121]
gi|418164093|ref|ZP_12800767.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17371]
gi|418166368|ref|ZP_12803024.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17971]
gi|418170967|ref|ZP_12807594.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19451]
gi|418177777|ref|ZP_12814361.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41565]
gi|418184521|ref|ZP_12821069.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47283]
gi|418186762|ref|ZP_12823292.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47360]
gi|418188981|ref|ZP_12825496.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47373]
gi|418195662|ref|ZP_12832142.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47688]
gi|418198264|ref|ZP_12834724.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47778]
gi|418223025|ref|ZP_12849670.1| peptide chain release factor 2 [Streptococcus pneumoniae 5185-06]
gi|418227344|ref|ZP_12853963.1| peptide chain release factor 2 [Streptococcus pneumoniae 3063-00]
gi|418229494|ref|ZP_12856101.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP01]
gi|419424786|ref|ZP_13964986.1| peptide chain release factor 2 [Streptococcus pneumoniae 7533-05]
gi|419426911|ref|ZP_13967094.1| peptide chain release factor 2 [Streptococcus pneumoniae 5652-06]
gi|419429012|ref|ZP_13969181.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11856]
gi|419435630|ref|ZP_13975725.1| peptide chain release factor 2 [Streptococcus pneumoniae 8190-05]
gi|419437712|ref|ZP_13977784.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13499]
gi|419442245|ref|ZP_13982276.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13224]
gi|419444366|ref|ZP_13984381.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19923]
gi|419446494|ref|ZP_13986499.1| peptide chain release factor 2 [Streptococcus pneumoniae 7879-04]
gi|419449057|ref|ZP_13989054.1| peptide chain release factor 2 [Streptococcus pneumoniae 4075-00]
gi|419450729|ref|ZP_13990716.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP02]
gi|419452827|ref|ZP_13992801.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP03]
gi|419470717|ref|ZP_14010576.1| peptide chain release factor 2 [Streptococcus pneumoniae GA07914]
gi|419472809|ref|ZP_14012660.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13430]
gi|419477420|ref|ZP_14017245.1| peptide chain release factor 2 [Streptococcus pneumoniae GA18068]
gi|419481778|ref|ZP_14021572.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40563]
gi|419490684|ref|ZP_14030424.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47179]
gi|419492902|ref|ZP_14032629.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47210]
gi|419501494|ref|ZP_14041180.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47628]
gi|419503566|ref|ZP_14043237.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47760]
gi|419505698|ref|ZP_14045359.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49194]
gi|419510084|ref|ZP_14049728.1| peptide chain release factor 2 [Streptococcus pneumoniae NP141]
gi|419518559|ref|ZP_14058166.1| peptide chain release factor 2 [Streptococcus pneumoniae GA08825]
gi|419520694|ref|ZP_14060291.1| peptide chain release factor 2 [Streptococcus pneumoniae GA05245]
gi|419527591|ref|ZP_14067135.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17719]
gi|419529791|ref|ZP_14069322.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40028]
gi|419531992|ref|ZP_14071510.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47794]
gi|421208585|ref|ZP_15665610.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070005]
gi|421212755|ref|ZP_15669717.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070108]
gi|421214943|ref|ZP_15671874.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070109]
gi|421224608|ref|ZP_15681354.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070768]
gi|421233754|ref|ZP_15690376.1| peptide chain release factor 2 [Streptococcus pneumoniae 2061617]
gi|421238390|ref|ZP_15694959.1| peptide chain release factor 2 [Streptococcus pneumoniae 2071247]
gi|421242747|ref|ZP_15699269.1| peptide chain release factor 2 [Streptococcus pneumoniae 2081074]
gi|421244584|ref|ZP_15701087.1| peptide chain release factor 2 [Streptococcus pneumoniae 2081685]
gi|421247010|ref|ZP_15703497.1| peptide chain release factor 2 [Streptococcus pneumoniae 2082170]
gi|421249058|ref|ZP_15705521.1| peptide chain release factor 2 [Streptococcus pneumoniae 2082239]
gi|421270178|ref|ZP_15721035.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR48]
gi|421274666|ref|ZP_15725498.1| peptide chain release factor 2 [Streptococcus pneumoniae GA52612]
gi|421287242|ref|ZP_15738008.1| peptide chain release factor 2 [Streptococcus pneumoniae GA58771]
gi|421289397|ref|ZP_15740149.1| peptide chain release factor 2 [Streptococcus pneumoniae GA54354]
gi|421304717|ref|ZP_15755373.1| peptide chain release factor 2 [Streptococcus pneumoniae GA62331]
gi|421313930|ref|ZP_15764520.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47562]
gi|444383948|ref|ZP_21182121.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS8106]
gi|444385510|ref|ZP_21183583.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS8203]
gi|444387425|ref|ZP_21185447.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS125219]
gi|444390125|ref|ZP_21188040.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS70012]
gi|444393053|ref|ZP_21190713.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS81218]
gi|444394242|ref|ZP_21191795.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0002]
gi|444397193|ref|ZP_21194680.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0006]
gi|444400046|ref|ZP_21197469.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0007]
gi|444401586|ref|ZP_21198770.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0008]
gi|444405284|ref|ZP_21202197.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0009]
gi|444408868|ref|ZP_21205498.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0010]
gi|444410182|ref|ZP_21206730.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0076]
gi|444411908|ref|ZP_21208234.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0153]
gi|444415014|ref|ZP_21211261.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0199]
gi|444416749|ref|ZP_21212828.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0360]
gi|444419286|ref|ZP_21215159.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0427]
gi|444422599|ref|ZP_21218248.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0446]
gi|147756869|gb|EDK63909.1| peptide chain release factor 2 [Streptococcus pneumoniae SP11-BS70]
gi|147765100|gb|EDK72029.1| peptide chain release factor 2 [Streptococcus pneumoniae SP19-BS75]
gi|220674011|emb|CAR68524.1| peptide chain release factor 2 [Streptococcus pneumoniae ATCC
700669]
gi|298238135|gb|ADI69266.1| peptide chain release factor RF2 [Streptococcus pneumoniae
TCH8431/19A]
gi|301793914|emb|CBW36310.1| peptide chain release factor 2 [Streptococcus pneumoniae INV104]
gi|327390112|gb|EGE88455.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04375]
gi|332076034|gb|EGI86500.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41301]
gi|332202619|gb|EGJ16688.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41317]
gi|332204764|gb|EGJ18829.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47901]
gi|353758068|gb|EHD38661.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44288]
gi|353760062|gb|EHD40644.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47281]
gi|353765471|gb|EHD46013.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49138]
gi|353773194|gb|EHD53693.1| peptide chain release factor 2 [Streptococcus pneumoniae 7286-06]
gi|353791392|gb|EHD71770.1| peptide chain release factor 2 [Streptococcus pneumoniae GA18523]
gi|353793659|gb|EHD74018.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44194]
gi|353798492|gb|EHD78822.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44378]
gi|353800067|gb|EHD80381.1| peptide chain release factor 2 [Streptococcus pneumoniae NP170]
gi|353803214|gb|EHD83506.1| peptide chain release factor 2 [Streptococcus pneumoniae GA07643]
gi|353805604|gb|EHD85878.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13455]
gi|353812861|gb|EHD93094.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13856]
gi|353814799|gb|EHD95022.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14798]
gi|353819137|gb|EHD99335.1| peptide chain release factor 2 [Streptococcus pneumoniae GA16121]
gi|353829964|gb|EHE10094.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17971]
gi|353832420|gb|EHE12538.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17371]
gi|353837137|gb|EHE17223.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19451]
gi|353844551|gb|EHE24594.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41565]
gi|353852119|gb|EHE32109.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47283]
gi|353853348|gb|EHE33331.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47360]
gi|353856123|gb|EHE36092.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47373]
gi|353862189|gb|EHE42122.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47688]
gi|353862902|gb|EHE42832.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47778]
gi|353880297|gb|EHE60113.1| peptide chain release factor 2 [Streptococcus pneumoniae 5185-06]
gi|353882945|gb|EHE62754.1| peptide chain release factor 2 [Streptococcus pneumoniae 3063-00]
gi|353889680|gb|EHE69448.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP01]
gi|353902704|gb|EHE78232.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11663]
gi|379540166|gb|EHZ05340.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13499]
gi|379540597|gb|EHZ05769.1| peptide chain release factor 2 [Streptococcus pneumoniae GA05245]
gi|379545433|gb|EHZ10572.1| peptide chain release factor 2 [Streptococcus pneumoniae GA07914]
gi|379552272|gb|EHZ17362.1| peptide chain release factor 2 [Streptococcus pneumoniae GA11856]
gi|379552316|gb|EHZ17405.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13430]
gi|379554212|gb|EHZ19292.1| peptide chain release factor 2 [Streptococcus pneumoniae GA13224]
gi|379566536|gb|EHZ31524.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17719]
gi|379566802|gb|EHZ31789.1| peptide chain release factor 2 [Streptococcus pneumoniae GA18068]
gi|379572059|gb|EHZ37016.1| peptide chain release factor 2 [Streptococcus pneumoniae GA19923]
gi|379574531|gb|EHZ39469.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40028]
gi|379581457|gb|EHZ46342.1| peptide chain release factor 2 [Streptococcus pneumoniae GA40563]
gi|379594263|gb|EHZ59073.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47179]
gi|379594940|gb|EHZ59749.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47210]
gi|379601855|gb|EHZ66627.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47628]
gi|379607612|gb|EHZ72358.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49194]
gi|379608748|gb|EHZ73493.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47794]
gi|379609164|gb|EHZ73905.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47760]
gi|379614034|gb|EHZ78744.1| peptide chain release factor 2 [Streptococcus pneumoniae 7879-04]
gi|379616407|gb|EHZ81103.1| peptide chain release factor 2 [Streptococcus pneumoniae 8190-05]
gi|379618364|gb|EHZ83039.1| peptide chain release factor 2 [Streptococcus pneumoniae 5652-06]
gi|379620441|gb|EHZ85097.1| peptide chain release factor 2 [Streptococcus pneumoniae 7533-05]
gi|379624115|gb|EHZ88748.1| peptide chain release factor 2 [Streptococcus pneumoniae 4075-00]
gi|379624628|gb|EHZ89259.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP02]
gi|379627411|gb|EHZ92023.1| peptide chain release factor 2 [Streptococcus pneumoniae EU-NP03]
gi|379633277|gb|EHZ97846.1| peptide chain release factor 2 [Streptococcus pneumoniae NP141]
gi|379641538|gb|EIA06073.1| peptide chain release factor 2 [Streptococcus pneumoniae GA08825]
gi|395577055|gb|EJG37609.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070005]
gi|395581162|gb|EJG41635.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070108]
gi|395582502|gb|EJG42964.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070109]
gi|395591944|gb|EJG52239.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070768]
gi|395602651|gb|EJG62793.1| peptide chain release factor 2 [Streptococcus pneumoniae 2061617]
gi|395602977|gb|EJG63118.1| peptide chain release factor 2 [Streptococcus pneumoniae 2071247]
gi|395610067|gb|EJG70148.1| peptide chain release factor 2 [Streptococcus pneumoniae 2081074]
gi|395610242|gb|EJG70321.1| peptide chain release factor 2 [Streptococcus pneumoniae 2081685]
gi|395614646|gb|EJG74664.1| peptide chain release factor 2 [Streptococcus pneumoniae 2082170]
gi|395615687|gb|EJG75703.1| peptide chain release factor 2 [Streptococcus pneumoniae 2082239]
gi|395870830|gb|EJG81943.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR48]
gi|395875394|gb|EJG86475.1| peptide chain release factor 2 [Streptococcus pneumoniae GA52612]
gi|395889651|gb|EJH00658.1| peptide chain release factor 2 [Streptococcus pneumoniae GA58771]
gi|395890657|gb|EJH01663.1| peptide chain release factor 2 [Streptococcus pneumoniae GA54354]
gi|395905379|gb|EJH16284.1| peptide chain release factor 2 [Streptococcus pneumoniae GA62331]
gi|395914430|gb|EJH25274.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47562]
gi|406369143|gb|AFS42833.1| peptide chain release factor 2 [Streptococcus pneumoniae
gamPNI0373]
gi|444247868|gb|ELU54395.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS8106]
gi|444250112|gb|ELU56596.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS8203]
gi|444253299|gb|ELU59757.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS125219]
gi|444256588|gb|ELU62926.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS70012]
gi|444261309|gb|ELU67613.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0002]
gi|444262424|gb|ELU68722.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0006]
gi|444262499|gb|ELU68795.1| peptide chain release factor 2 [Streptococcus pneumoniae PCS81218]
gi|444267432|gb|ELU73335.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0007]
gi|444267910|gb|ELU73793.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0008]
gi|444269162|gb|ELU74977.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0010]
gi|444274647|gb|ELU80292.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0009]
gi|444275240|gb|ELU80867.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0153]
gi|444278113|gb|ELU83589.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0076]
gi|444280814|gb|ELU86165.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0199]
gi|444285218|gb|ELU90299.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0360]
gi|444287129|gb|ELU92070.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0427]
gi|444288027|gb|ELU92930.1| peptide chain release factor 2 [Streptococcus pneumoniae PNI0446]
Length = 325
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + ++ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|406998514|gb|EKE16445.1| hypothetical protein ACD_11C00017G0035 [uncultured bacterium]
Length = 331
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 161/320 (50%), Gaps = 12/320 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + E + +L V ++L +E + LAE + K+A
Sbjct: 12 FWNDAQSAGETMKELEALKSKVLKFENLEKNIKELGELVDLAESAKDKKDIEKQA----- 66
Query: 67 DV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K +++ E L G D ++I +G+ G+ + WAE LL MY+R+A+K ++
Sbjct: 67 DVLQKEIEELEFQALFSGEYDRNDVILSIHSGAGGVDAQDWAEMLLRMYLRFAEKNNFKT 126
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D+ + G+KSAT+E + YA+G L GE G H L+ N + + A V+++
Sbjct: 127 NVIDQSRGQEAGIKSATVEIKGNYAYGNLKGEAGVHRLVRLSPFNSDNLRQTSFALVEIL 186
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ E S +++I ++DL ++ S G+ + A + HIPTG V ER+
Sbjct: 187 PIISEIS-EVKIEEKDLRVDVYRSSGAGGQSVNTTDSAVRVTHIPTGTVVTCQNERSQLQ 245
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ LKAKL E+ ++ E W + R YV HPYK+V+D +T +
Sbjct: 246 NKESAMKILKAKLHQKYLEEKEKEKQKLRGEYQSAEWGSQVRSYVIHPYKMVKDHRTKYE 305
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ VL+G+I FIE+++
Sbjct: 306 TSEAEKVLEGDIAEFIESYL 325
>gi|387909591|ref|YP_006339897.1| peptide chain release factor 2 [Streptococcus thermophilus
MN-ZLW-002]
gi|387574526|gb|AFJ83232.1| peptide chain release factor 2 [Streptococcus thermophilus
MN-ZLW-002]
Length = 337
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 167/327 (51%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +K+L ++E +L ++ E D + +
Sbjct: 16 DFWNDNIAAQKTSQELNELKIKYETFNNMKEL---SDETELYLEMLEE---DDSVQEELE 69
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WAE LL MY R+ + +G
Sbjct: 70 ETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWAEMLLRMYQRYGNAKG 129
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 130 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 188
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 189 VEVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 247
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 248 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 307
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I+ FI+A++ R
Sbjct: 308 TGYEVAQVDKVIDGDIEGFIDAYLKWR 334
>gi|418075863|ref|ZP_12713102.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47502]
gi|353749652|gb|EHD30295.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47502]
Length = 325
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQGEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + ++ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|336118944|ref|YP_004573716.1| peptide chain release factor 2 [Microlunatus phosphovorus NM-1]
gi|334686728|dbj|BAK36313.1| peptide chain release factor 2 [Microlunatus phosphovorus NM-1]
Length = 368
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 164/323 (50%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + + +L+ ++ + DLR + ++ ++ +LA E+ D A
Sbjct: 44 DLWDDVDNAQRITSRLSALQSEIDRVADLRSRLDDLSVLIELATEES-DAASLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++ E+ LL G D A VTI++ + G+ +A LL MY+RWA++ GY
Sbjct: 103 SSLQHAVESLEVRTLLSGEYDPREALVTIRSEAGGVDAADFAAMLLRMYLRWAERHGYPA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYDTSYAEEAGIKSATFQVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ E + + I + D+ +F S G+ + A I H+PTGI V E++
Sbjct: 223 PV-TEEADHIDIPEADIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKAAALRVLQARLLEKARRDREAEMNALKGDG-GNSWGSQMRSYVLHPYQMVKDLRTDFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ ++V DG + FIE+ I R
Sbjct: 341 VSSPDAVFDGELDGFIESGIRWR 363
>gi|183603302|ref|ZP_02711260.2| peptide chain release factor 2 [Streptococcus pneumoniae
CDC1087-00]
gi|183603790|ref|ZP_02721350.2| peptide chain release factor 2 [Streptococcus pneumoniae MLV-016]
gi|194397508|ref|YP_002037401.1| peptide chain release factor 2 [Streptococcus pneumoniae G54]
gi|225856431|ref|YP_002737942.1| peptide chain release factor 2 [Streptococcus pneumoniae P1031]
gi|225858565|ref|YP_002740075.1| peptide chain release factor 2 [Streptococcus pneumoniae 70585]
gi|225860729|ref|YP_002742238.1| peptide chain release factor 2 [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229611|ref|ZP_06963292.1| peptide chain release factor 2 [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255815|ref|ZP_06979401.1| peptide chain release factor 2 [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|307067358|ref|YP_003876324.1| protein chain release factor B [Streptococcus pneumoniae AP200]
gi|387787917|ref|YP_006252985.1| peptide chain release factor RF-2 [Streptococcus pneumoniae ST556]
gi|415697646|ref|ZP_11456876.1| peptide chain release factor 2 [Streptococcus pneumoniae 459-5]
gi|415749161|ref|ZP_11477105.1| peptide chain release factor 2 [Streptococcus pneumoniae SV35]
gi|415751843|ref|ZP_11478954.1| peptide chain release factor 2 [Streptococcus pneumoniae SV36]
gi|183570249|gb|EDT90777.1| peptide chain release factor 2 [Streptococcus pneumoniae
CDC1087-00]
gi|183578420|gb|EDT98948.1| peptide chain release factor 2 [Streptococcus pneumoniae MLV-016]
gi|194357175|gb|ACF55623.1| peptide chain release factor 2 [Streptococcus pneumoniae G54]
gi|225721230|gb|ACO17084.1| peptide chain release factor 2 [Streptococcus pneumoniae 70585]
gi|225726237|gb|ACO22089.1| peptide chain release factor 2 [Streptococcus pneumoniae P1031]
gi|225727373|gb|ACO23224.1| peptide chain release factor 2 [Streptococcus pneumoniae
Taiwan19F-14]
gi|306408895|gb|ADM84322.1| Protein chain release factor B [Streptococcus pneumoniae AP200]
gi|379137659|gb|AFC94450.1| peptide chain release factor RF-2 [Streptococcus pneumoniae ST556]
gi|381309539|gb|EIC50372.1| peptide chain release factor 2 [Streptococcus pneumoniae SV36]
gi|381317455|gb|EIC58180.1| peptide chain release factor 2 [Streptococcus pneumoniae SV35]
gi|381319244|gb|EIC59960.1| peptide chain release factor 2 [Streptococcus pneumoniae 459-5]
Length = 329
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 64
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 65 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + ++ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|418326027|ref|ZP_12937223.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU071]
gi|420162884|ref|ZP_14669639.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM095]
gi|420167326|ref|ZP_14673987.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM087]
gi|420185951|ref|ZP_14692027.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM040]
gi|365226938|gb|EHM68149.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU071]
gi|394235881|gb|EJD81431.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM095]
gi|394238955|gb|EJD84412.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM087]
gi|394253043|gb|EJD98059.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM040]
Length = 333
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 158/325 (48%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG I FIEA++
Sbjct: 300 RTNEETGKVDAVMDGEIGQFIEAYL 324
>gi|424828125|ref|ZP_18252866.1| peptide chain release factor 2 [Clostridium sporogenes PA 3679]
gi|365979608|gb|EHN15661.1| peptide chain release factor 2 [Clostridium sporogenes PA 3679]
Length = 327
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 14/327 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
++N N WDD ++ ++ + L D L N DL+ E+ + ++ + D G
Sbjct: 1 MQNPNFWDDIKEAQKITSEEKYLKDKLIKYN---DLKSTIEDIISLCEMLSDDDDDMG-- 55
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K ++ + +D++++ LL G D +T+ +G G + W + L MY RWA
Sbjct: 56 KEILSEYKNIKEEIDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRWA 115
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + + +
Sbjct: 116 EKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQTS 175
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A ++V+P L +++I EDL + + G+ + + A I HIPTGI VQ
Sbjct: 176 FASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQCQ 234
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV+
Sbjct: 235 NERSQHTNKETAMKVLKSKLVELKERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVK 294
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHI 320
D +TG + + ++V++G+I FI ++
Sbjct: 295 DHRTGAETSNVDAVMNGDINIFITEYL 321
>gi|210620542|ref|ZP_03292090.1| hypothetical protein CLOHIR_00033 [Clostridium hiranonis DSM 13275]
gi|210155256|gb|EEA86262.1| hypothetical protein CLOHIR_00033 [Clostridium hiranonis DSM 13275]
Length = 349
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 168/328 (51%), Gaps = 10/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D +++VL + + V + L+ E+ +++ +L E + K +
Sbjct: 24 DFWEDNENAHKVLQENKKLCETVEKFEQLQKNLEDIEVLIELGLEEDDSEDIEKEVSDSI 83
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++D+ + LL G D A V+I AG+ G+ + WA+ LL MY+RWA+ Y+
Sbjct: 84 NQLKDVIDEMTIQTLLSGEYDKNNAIVSINAGTGGLDAQDWAQMLLRMYIRWAEGRDYKV 143
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLACVD 181
+++D G+K+A + + + A+GYL GE G H ++ P+G + A VD
Sbjct: 144 KLLDLISDPEAGIKTAVMLIQGDNAYGYLKGEKGVHRIVRISPFDPSG--KRHTSFASVD 201
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + +++I+ DL + + G+ + A I H+PTGI VQ ER+
Sbjct: 202 VIP-ELDENIEVEINQSDLKIDTYRASGAGGQHVNTTDSAVRITHLPTGITVQCQNERSQ 260
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ A+ L AKL+ I + + ++ + W + R YV PYK+V+D +T
Sbjct: 261 HLNREVAMRMLMAKLIDIKEMEQKEKIEDLQGKYTQITWGSQIRSYVFQPYKMVKDHRTN 320
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+ + ++V++GNI FI +++ ++ S
Sbjct: 321 TETGNVDAVMNGNIDIFINSYLTRKKLS 348
>gi|337290240|ref|YP_004629261.1| peptide chain release factor RF-2 [Corynebacterium ulcerans
BR-AD22]
gi|397653481|ref|YP_006494164.1| peptide chain release factor 2 [Corynebacterium ulcerans 0102]
gi|334698546|gb|AEG83342.1| peptide chain release factor RF-2 [Corynebacterium ulcerans
BR-AD22]
gi|393402437|dbj|BAM26929.1| peptide chain release factor 2 [Corynebacterium ulcerans 0102]
Length = 367
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 163/323 (50%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTGLRQRIDDIPVMYELAEEEGDGTELADEELAA- 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 102 --LTAEIESLEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 338 VNDPQKVLDGDIDGLLEAGIRWR 360
>gi|421874828|ref|ZP_16306428.1| peptide chain release factor 2 [Brevibacillus laterosporus GI-9]
gi|372456172|emb|CCF15977.1| peptide chain release factor 2 [Brevibacillus laterosporus GI-9]
Length = 327
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 162/324 (50%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + + L ++ +++ +L +E D L Y+++
Sbjct: 5 DFWDDNDAAQKTIGELNGIKSLTDTMGRLDASYDDLQMMLELV-IEEGDSSLISDLYQST 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K + +E+ LL D A + + G+ G + W LL MY RWA+++G++
Sbjct: 64 QDLKKNFEDFELELLLSDQYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D G+KS T+ + A+GYL E G H L+ F H + ++C +V
Sbjct: 124 ETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-NV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P +E ++ I EDL + S G+ + A I H+PTGI V ER+
Sbjct: 183 LP-EIENDKEVDIRTEDLKIDTYRSSGAGGQHINTTDSAVRITHLPTGIVVTCQTERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L KL + ++ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 242 KNRDRAMKMLLGKLFELQKQEQEKTLASIQGEQKDIAWGSQIRSYVFHPYSMVKDHRTNM 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG + PFI+A++ S+
Sbjct: 302 EVGNVQAVMDGELDPFIDAYLRSQ 325
>gi|348027317|ref|YP_004767122.1| peptide chain release factor 2 [Megasphaera elsdenii DSM 20460]
gi|341823371|emb|CCC74295.1| peptide chain release factor 2 [Megasphaera elsdenii DSM 20460]
Length = 337
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 162/324 (50%), Gaps = 9/324 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+DP K+ ++ + A LK V ++L KA++ ++A ME D + +
Sbjct: 8 FWNDPDKAKKI-SQEATLLKTEVEGHEELVRKADDLSEYLEMA-MEDGDASFAEDIEKQY 65
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K +++ E+ LL G D A +T AG+ G + WA+ L+ MY RWA++ GY+
Sbjct: 66 HDLLKDIEKREVRLLLSGEYDKCNALITFHAGAGGTEAQDWAQMLIRMYTRWAERNGYKL 125
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KSA E EYA+GYL E G H L+ + + + VDV+
Sbjct: 126 TILDMQPGDEAGIKSAAFRVEGEYAYGYLKSEKGVHRLVRISPFDAAARRHTSFTAVDVM 185
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L D++I+ +D+ F + G+ + A + H+PTGI VQ ER+
Sbjct: 186 PE-LPDDVDVEINMDDVRVDYFRASGAGGQHVNKTSSAVRMTHMPTGIVVQCQNERSQLQ 244
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK L L+AKL + E+ + I W + R YV HPY LV+D +T ++
Sbjct: 245 NKEMCLKYLRAKLFELEQEKQEKLKAEIGGVHQAIEWGSQIRSYVFHPYNLVKDHRTNVE 304
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+ +V+DG++ FIE ++ +
Sbjct: 305 TGNIQAVMDGDLDIFIEGYLQQEK 328
>gi|312865919|ref|ZP_07726140.1| peptide chain release factor 2 [Streptococcus downei F0415]
gi|311098323|gb|EFQ56546.1| peptide chain release factor 2 [Streptococcus downei F0415]
Length = 326
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 165/324 (50%), Gaps = 11/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + +L + + + + +EE++L ++ E +A G + A
Sbjct: 5 DFWDDNITAQKTSQELNELKQTYDTFNQMEELSEESELYLEMLEEDASVQGDLEETL-AK 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G++
Sbjct: 64 LD--KMMTSYEMTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYQRYGNAKGFKV 121
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D G+KS T+ FE +A+G L E G H L+ F + H + ++V
Sbjct: 122 EVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTSIEV 180
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ + +++I D+DL F S G+ + + HIPTGI V S +R +
Sbjct: 181 MPE-LDDTIEVEIRDDDLKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQY 239
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L+AKL + E+ VS +K + W + R YV PY +V+D +TG
Sbjct: 240 GNRDRAMKMLQAKLYQLEQEKKAQEVSALKGDKKEITWGSQIRSYVFTPYTMVKDHRTGY 299
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + V+DG+I FI+A++ R
Sbjct: 300 EVAQVDKVMDGDIDGFIDAYLKWR 323
>gi|138896684|ref|YP_001127137.1| peptide chain release factor 2 [Geobacillus thermodenitrificans
NG80-2]
gi|134268197|gb|ABO68392.1| Bacterial peptide chain release factor 2, RF-2 [Geobacillus
thermodenitrificans NG80-2]
Length = 327
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 169/324 (52%), Gaps = 11/324 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD K+ + ++ A++LK +V + L + + ++ +L + E D L +
Sbjct: 6 FWDD-QKAAQAIISEANALKELVGEFESLAERFDNLEVTYELLKEEPDDE-LQAELVEEA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K Q+E+ LL P D A + + G+ G + WA LL MY RWA+K+G++
Sbjct: 64 KKLTKDFSQFELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D + GVKS T+ + A+GYL E G H L+ F H + ++C +V
Sbjct: 124 ETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP ++ + +++I E+L + S G+ + A I H+PTGI V ER+
Sbjct: 183 VPE-MDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ KA+N LKAKL E+ + ++ ++ E W + R YV HPY LV+D +T +
Sbjct: 242 KNREKAMNMLKAKLYQKKMEEQQAELAELRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNV 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I FI+A++ ++
Sbjct: 302 EVGNVQAVMDGEIDVFIDAYLRAK 325
>gi|359410417|ref|ZP_09202882.1| peptide chain release factor 2 [Clostridium sp. DL-VIII]
gi|357169301|gb|EHI97475.1| peptide chain release factor 2 [Clostridium sp. DL-VIII]
Length = 364
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 150/319 (47%), Gaps = 8/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ EV K + L+ E+ +++ ++ ME D +
Sbjct: 47 FWDDSKRAEEVTKKSKLIKDKIENFDKLKSDIEDIEVLKEI--MEEDDEESASEIIQTIK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +D Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 GIEDKIDDYNMKVLLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 165 TLDLLPGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPYNANGKRQTSFASMEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L D+ I +DL + S G+ + A I H+PTGI VQ ER+ FAN
Sbjct: 225 -ELTKEQDINIKPDDLRIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQCQNERSQFAN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 284 KDTAMEMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 343
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ +V+DG I FI A++
Sbjct: 344 SNVTAVMDGEIDMFINAYL 362
>gi|227529549|ref|ZP_03959598.1| peptide chain release factor RF2 [Lactobacillus vaginalis ATCC
49540]
gi|227350508|gb|EEJ40799.1| peptide chain release factor RF2 [Lactobacillus vaginalis ATCC
49540]
Length = 356
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 162/333 (48%), Gaps = 25/333 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKD-------LRYKAEEAKLIAQLAEMEAID--YGL 57
WDD + +V+ N LKD LR + +L E+E D
Sbjct: 30 FWDDNVAAQKVI-------NANNELKDKRDTFVKLRDNIGNLQTSIELLELEPDDELQSE 82
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
F++++ + K L+QY +++LL G D + A + I G+ G + W LL MYVRW
Sbjct: 83 FEKSFG---ETQKELEQYRLNQLLDGEYDAKNAILEIHPGAGGTEAQDWGAMLLRMYVRW 139
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
++ G+ + G+KS T+ + AFGYL E G H L+ + +
Sbjct: 140 GEQHGFNVETASYEAGEEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHT 199
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A VDV+P L+ S ++ I DL F S G+ + + A I HIPTGI S
Sbjct: 200 SFASVDVMPE-LDESVNIDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHIPTGIVTSS 258
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ N++ A+N LK+KL + E+ + I+ E + W + R YV HPY LV
Sbjct: 259 QAERSQLQNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLEIGWGSQIRSYVFHPYTLV 318
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+D ++G + + +V+DG++ PFI A++ + S
Sbjct: 319 KDNRSGHETHNGQAVMDGDLDPFINAYLQWKLS 351
>gi|297544050|ref|YP_003676352.1| hypothetical protein Tmath_0587 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841825|gb|ADH60341.1| hypothetical protein Tmath_0587 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 368
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 164/323 (50%), Gaps = 7/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D KS E+ + + +++ L K E+ + +L +E D + + +
Sbjct: 43 DFWNDIKKSQELAKRQKELKELLEEYNSLVRKWEDLTTLIELG-LEEGDESITEEVDKEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K L+ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 102 KELKKKLEDLKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFDV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KS T+ + +A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE +++I EDL + + G+ + + A I H+PTGI V ER+
Sbjct: 222 P-ELEDDIEVEIRPEDLRIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQNERSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKAKLL ++ ++ + +K E W + R YV PY LV+D +T +
Sbjct: 281 NRETAMKMLKAKLLDLMMKEKKEKIEDLKGEHKEAAWGNQIRSYVFQPYTLVKDHRTNFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + +V+DG I FI A++ +
Sbjct: 341 VGNVQAVMDGEIDDFINAYLKQK 363
>gi|218779410|ref|YP_002430728.1| peptide chain release factor 2 [Desulfatibacillum alkenivorans
AK-01]
gi|218760794|gb|ACL03260.1| peptide chain release factor 2 [Desulfatibacillum alkenivorans
AK-01]
Length = 327
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 163/318 (51%), Gaps = 9/318 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD P K+ +L + +V + L + EA+++ +L +E D + A + +
Sbjct: 6 FWDSPDKNTAILKERTSITSLVEGWEKLAEELSEAEVLLELG-VEEEDGQTIEEARQHLV 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K +D+ +S++L G +D A V I AG+ G + WAE LL MY+RW +++G+
Sbjct: 65 KIEKGIDKLSLSRMLDGEDDARNAIVAINAGAGGTDAQDWAEMLLRMYLRWVEQKGFSYS 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D GVK T +YA+GYL E G H L+ N + + + A V V P
Sbjct: 125 IIDYQPGDEAGVKGVTFTVTGDYAYGYLKTEEGVHRLVRISPFNSNGKRQTSFASVAVYP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ + ++++DL +F + G+ + A I HIPTGI VQ E++ N
Sbjct: 185 E-IDQEIVVDVNEKDLRIDVFRASGAGGQHVNKTSSAVRILHIPTGIVVQCQQEKSQHRN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQDVKTGIQ 300
+ A+ LKA+L + ++ EA I + + R YV HPY++V+D + +
Sbjct: 244 RDLAMKVLKARLYQVE-QEQQQKQMQDNYEAKEEIGFGNQIRSYVLHPYQMVKDHRINMD 302
Query: 301 LPDFNSVLDGNIKPFIEA 318
+ + N+VLDG+I PFIEA
Sbjct: 303 VGNVNAVLDGDIDPFIEA 320
>gi|319891756|ref|YP_004148631.1| peptide chain release factor 2 [Staphylococcus pseudintermedius
HKU10-03]
gi|386319904|ref|YP_006016067.1| peptide chain release factor 2 [Staphylococcus pseudintermedius
ED99]
gi|317161452|gb|ADV04995.1| Peptide chain release factor 2 [Staphylococcus pseudintermedius
HKU10-03]
gi|323465075|gb|ADX77228.1| peptide chain release factor 2 [Staphylococcus pseudintermedius
ED99]
Length = 329
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 159/325 (48%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ ++ ++ + VVN ++ EE +L + E D +
Sbjct: 1 MMADPQFWDNQERAQTIIDQNNAIKSVVNNYYEVAETLEEMIATYELLQ-EEYDDEMKDD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + +DQ+E+ LL G +D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEQEVIGFQTKVDQFELQLLLDGEHDANNAILELHPGAGGTESQDWTNMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ +VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 QGFKVEIVDYQAGDEAGVKSVTMLVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 180 SCDVIPEFNNEKIEVEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 239
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LKAKL + EQ ++ I+ E W + R YV HPY +V+D
Sbjct: 240 RSQIKNREAAMKMLKAKLYQLELEQKEQELAAIRGEQKDIGWGSQIRSYVFHPYSMVKDH 299
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + + N+V+DG I PFIEA++
Sbjct: 300 RTNEETGNVNAVMDGEIGPFIEAYL 324
>gi|420152309|ref|ZP_14659363.1| peptide chain release factor 2 [Actinomyces massiliensis F0489]
gi|394764981|gb|EJF46604.1| peptide chain release factor 2 [Actinomyces massiliensis F0489]
Length = 371
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 175/333 (52%), Gaps = 15/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + +++L + ++ + + ++A E+ + L A
Sbjct: 43 DLWDDPEAAQAVTSALSHAQADLGRVEELGARIDDLEAMVEMAGEESGEDADELLAEADS 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLEAISKDLSDLEIRTLLSGEYDQRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 SVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E++ + + + D+ +F S G+ + A I HIPTG+ V E++
Sbjct: 223 VIPL-IESTDHIDVPETDIRIDVFRSSGPGGQSVNTTDSAVRITHIPTGLVVSMQDEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D+
Sbjct: 282 IQNRAAAMRVLQSRLLLLKQQEE----DAKKKELAGDVKASWGDQMRSYVLNPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+T ++ + +SV DG+I FI++ I R+ ++
Sbjct: 338 RTNHEVGNPDSVFDGDIDGFIDSGIRWRKQQES 370
>gi|379710390|ref|YP_005265595.1| Peptide chain release factor 2 (RF-2) [Nocardia cyriacigeorgica
GUH-2]
gi|374847889|emb|CCF64961.1| Peptide chain release factor 2 (RF-2) [Nocardia cyriacigeorgica
GUH-2]
Length = 374
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 173/336 (51%), Gaps = 31/336 (9%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEE-------------AKLIAQLAEMEA 52
+LW+D + +V +L+ + + +++LR + E+ + A LAE +A
Sbjct: 46 DLWNDQDHAQQVTSELSHAQGELRRVEELRQRLEDLPVLYELAEGEEGEAMTAALAEADA 105
Query: 53 IDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
RA+L ++ E+ LL G D A V I++G+ G+ WAE L+
Sbjct: 106 ---------ERAALHAD--VEAMEVRTLLSGEYDKREALVNIRSGAGGVDAADWAEMLMR 154
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY+RWAD+ Y V D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 155 MYIRWADRHKYPVEVYDTSYAEEAGIKSATFAVKSPYAYGTLSVEMGTHRLVRISPFDNQ 214
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+ + A V+V+P+ +ET+ ++I + ++ ++ S G+ + A + HIPTG
Sbjct: 215 GRRQTSFAEVEVLPV-VETTDHIEIPEGEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTG 273
Query: 228 IAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSH 287
I V E++ NK+ A+ L+AKLL ++ + + +K + W + R YV H
Sbjct: 274 IVVTCQNEKSQLQNKISAMRVLQAKLLERKRQEERAEMDALKTNEGAS-WGNQMRSYVLH 332
Query: 288 PYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
PY++V+D++T ++ + ++VLDG+I FIE+ I R
Sbjct: 333 PYQMVKDLRTNHEVNNPSAVLDGDIDGFIESGIRWR 368
>gi|283457761|ref|YP_003362349.1| protein chain release factor B [Rothia mucilaginosa DY-18]
gi|283133764|dbj|BAI64529.1| protein chain release factor B [Rothia mucilaginosa DY-18]
Length = 421
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 177/330 (53%), Gaps = 15/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDD + +V L+ +N L+ L + ++ +++ +LAE E + L A R
Sbjct: 90 DLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVELAEAEDEETAAELLADAER 149
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 150 ECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 209
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+
Sbjct: 210 PTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 269
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E + ++I + ++ +F S G+ + A + H+PTGI V E++
Sbjct: 270 VIPL-IEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQ 328
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ AL L+++LL++ EQ K+E +I W + R YV HPY++V+D+
Sbjct: 329 LQNRAAALRVLQSRLLLLRKEQE----DAKKKELAGDIKASWGDQMRSYVLHPYQMVKDL 384
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+TG + + ++VLDG + FI+A I R S
Sbjct: 385 RTGYEEGNTSNVLDGGLNAFIDAGIRWRAS 414
>gi|400289919|ref|ZP_10791946.1| peptide chain release factor 2 [Streptococcus ratti FA-1 = DSM
20564]
gi|399920710|gb|EJN93527.1| peptide chain release factor 2 [Streptococcus ratti FA-1 = DSM
20564]
Length = 336
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 162/329 (49%), Gaps = 21/329 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + +L D + ++ ++EA+++ +LA+ E + +A
Sbjct: 16 DFWDDNLSAQKTSQELNDLKLKYDTFHNMESLSDEAEILYELADEEP--------SMQAD 67
Query: 66 LDVS-----KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
L+ S K++ YEM+ LL P D A + I GS G + W + LL MY R+
Sbjct: 68 LEDSLEKLDKMMSSYEMTLLLSEPYDANNAILEIHPGSGGTEAQDWGDMLLRMYTRFGSS 127
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+ ++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 128 KHFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSF 186
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A V+V+P L+ + ++ I DED+ F S G+ + + H+PTGI V S
Sbjct: 187 ASVEVMPE-LDDTIEVDIRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHVPTGIVVASTV 245
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
+R + N+ +A+ L+AKL + E+ V +K + W + R YV PY +V+D
Sbjct: 246 DRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYTMVKD 305
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+TG ++ + V+DG++ FI+A + R
Sbjct: 306 HRTGYEVAQVDKVMDGDLDGFIDAFLKWR 334
>gi|300778963|ref|ZP_07088821.1| peptide chain release factor RF2 [Chryseobacterium gleum ATCC
35910]
gi|300504473|gb|EFK35613.1| peptide chain release factor RF2 [Chryseobacterium gleum ATCC
35910]
Length = 376
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 165/320 (51%), Gaps = 11/320 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + L +L K V + ++ + E+ +++A A+ + +
Sbjct: 48 FWDNPKTAEAFLKQLRSKKKWVESYDEIHTQFEDLQVLADFAKEDPDSEKELDETFPQL- 106
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
V K+ D E +L D A + I AG+ G WA L+ MY WA+K+GY+ R
Sbjct: 107 -VEKIED-LEFKNMLSNEGDELSAVLQITAGAGGTESCDWASMLMRMYTMWAEKQGYKIR 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++ GVK+ T+E E EYAFGYL GE G H L+ F + + H + V V
Sbjct: 165 ELNFQEGDVAGVKTVTLEIEGEYAFGYLKGENGVHRLVRISPFDSNAKRH-TSFVSVYVY 223
Query: 184 PLFLETSPDLQISDEDLLFSS---PSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL ++ + ++ I+ D+ F + G+ + + A ++H PTGI +++ R+
Sbjct: 224 PL-VDDTIEININPADISFETMRASGAGGQNVNKVETAVRLRHAPTGIIIENSESRSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ L+++L + E+ + + I+ + W + R YV HPYKLV+DV++G +
Sbjct: 283 NKEKAMQLLRSRLYEMELEERMKARNEIEANKMKIEWGSQIRNYVMHPYKLVKDVRSGHE 342
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D ++V++GNI PF++A +
Sbjct: 343 TSDVDAVMNGNITPFLKAFL 362
>gi|359420531|ref|ZP_09212466.1| peptide chain release factor 2 [Gordonia araii NBRC 100433]
gi|358243528|dbj|GAB10535.1| peptide chain release factor 2 [Gordonia araii NBRC 100433]
Length = 374
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 168/332 (50%), Gaps = 13/332 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA----Y 62
LW+D + +V +L+ + + + +LR + ++ + +LAE E D A
Sbjct: 44 LWNDQDHAQKVTSELSHAQAEMRRVSELRQRLDDLPVHYELAEAEEGDDRASALADADTE 103
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RASL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY RWA+ G
Sbjct: 104 RASLRAD--IEAMEVKTMLAGEYDQRDALVNIRSGAGGVDAADWAQMLMRMYTRWAEAHG 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT + Y +G LS E G H L+ + + + A V
Sbjct: 162 YGVEVYDTSYAEEAGIKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +ET+ + I + DL ++ S G+ + A + H+PTGI V E++
Sbjct: 222 EVLPV-VETTDHIDIDENDLKVDVYRSSGPGGQSVNTTDSAVRLTHLPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKASAMRVLQAKLLERKRAEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++ + +VLDG + FIEA I R + D
Sbjct: 340 NVENNNPGAVLDGELDDFIEAGIRWRMADGDD 371
>gi|376256646|ref|YP_005144537.1| peptide chain release factor 2 [Corynebacterium diphtheriae VA01]
gi|372119163|gb|AEX82897.1| peptide chain release factor 2 [Corynebacterium diphtheriae VA01]
Length = 369
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 13/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L DV L E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K +
Sbjct: 103 LTADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDH 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D + G+KSAT EY +G LS E GAH L+ + + + A ++
Sbjct: 159 KVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 VLPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 278 IQNKASAMCVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTN 336
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D VLDG+I +EA I R
Sbjct: 337 YEVNDPQKVLDGDIDGLLEAGIRWR 361
>gi|289577756|ref|YP_003476383.1| hypothetical protein Thit_0519 [Thermoanaerobacter italicus Ab9]
gi|289527469|gb|ADD01821.1| hypothetical protein Thit_0519 [Thermoanaerobacter italicus Ab9]
Length = 368
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 164/323 (50%), Gaps = 7/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D KS E+ + + +++ L K E+ + +L +E D + + +
Sbjct: 43 DFWNDIKKSQELAKRQKELKELLEEYNSLVRKWEDLTTLIELG-LEEGDESITEEVDKEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K L+ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 102 KELKKKLEDLKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFDV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KS T+ + +A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE +++I EDL + + G+ + + A I H+PTGI V ER+
Sbjct: 222 P-ELEDDIEVEIRPEDLRIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQNERSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKAKLL ++ ++ + +K E W + R YV PY LV+D +T +
Sbjct: 281 NRETAMKMLKAKLLDLMMKEKKEKIEDLKGEHKEAAWGNQIRSYVFQPYTLVKDHRTNFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + +V+DG I FI A++ +
Sbjct: 341 VGNVQAVMDGEIDDFINAYLKQK 363
>gi|196249386|ref|ZP_03148084.1| peptide chain release factor 2 [Geobacillus sp. G11MC16]
gi|196211143|gb|EDY05904.1| peptide chain release factor 2 [Geobacillus sp. G11MC16]
Length = 327
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 169/324 (52%), Gaps = 11/324 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD K+ + ++ A++LK +V + L + + ++ +L + E D L +
Sbjct: 6 FWDD-QKAAQAIISEANALKELVGEFESLAERFDNLEVTYELLKEEPDDE-LQAELVEEA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K Q+E+ LL P D A + + G+ G + WA LL MY RWA+K+G++
Sbjct: 64 KKLTKDFSQFELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D + GVKS T+ + A+GYL E G H L+ F H + ++C +V
Sbjct: 124 ETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP ++ + +++I E+L + S G+ + A I H+PTGI V ER+
Sbjct: 183 VPE-MDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ KA+N LKAKL E+ + ++ ++ E W + R YV HPY LV+D +T +
Sbjct: 242 KNREKAINMLKAKLYQKKMEEQQAELAELRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNV 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I FI+A++ ++
Sbjct: 302 EVGNVQAVMDGEIDVFIDAYLRAK 325
>gi|385840722|ref|YP_005864046.1| Bacterial Peptide Chain Release Factor 2 [Lactobacillus salivarius
CECT 5713]
gi|300214843|gb|ADJ79259.1| Bacterial Peptide Chain Release Factor 2 [Lactobacillus salivarius
CECT 5713]
Length = 355
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 22/327 (6%)
Query: 7 LWDDPTKSNEVLV-------KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
WDD K+ EV+ K ++ ++ DL E L+ ++ + E + L +
Sbjct: 28 FWDDQEKAQEVIAENNDLKAKFETFHELAESISDLEVSLE---LLQEIPDDEELQADLEE 84
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
A KLL Y+++ LL D A + I G+ G + W LL MY RWA
Sbjct: 85 NYQHAE----KLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTESQDWGSMLLRMYTRWAS 140
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
+ ++ VD + G+KS T+ E + A+GYL E G H L+ F + H +
Sbjct: 141 QHDFKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHRLVRISPFDSAGRRH-TS 199
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V+V+P L+ S ++++ ED+ +F + G+ + A + HIPTGI V S
Sbjct: 200 FASVNVMPE-LDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGIVVSSQ 258
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
+R+ F N+ A N L+AKL + E+ + I+ E + W + R YV HPY +V+
Sbjct: 259 AQRSQFQNRATAENMLRAKLYQLEMEEKEKQRAAIQGEQLDIGWGSQIRSYVFHPYSMVK 318
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHI 320
D +T + + +V+DG++ PFI A++
Sbjct: 319 DHRTDYETGNIQAVMDGDLDPFINAYL 345
>gi|296089769|emb|CBI39588.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 173/330 (52%), Gaps = 12/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + ++ + + + +K+L + E + +LA E D L + +A
Sbjct: 141 DLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREEN-DPELESESLKAL 199
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + + E+ LL G +D + ++AG+ G WA ++ MY WA + GY
Sbjct: 200 LGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGV 259
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ + EY+FGY E G H L+ F +G H + A V V
Sbjct: 260 TVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 318
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ + S +QI++ DL F + G+ + + A I HIPTG+ ER+
Sbjct: 319 IPILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQH 378
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQDVKT 297
NK A+ L+++L + + Q + ++ +++ +I W + R YV HPY++V+D++T
Sbjct: 379 QNKASAMAVLQSRLDQLEISRQ--AQINAQHTQSLTDISWGNQIRTYVLHPYRMVKDLRT 436
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ D +SVL+G++ FI +++++ D
Sbjct: 437 NYEVSDPDSVLEGDLDGFILSYLSASLDKD 466
>gi|383807635|ref|ZP_09963195.1| chain release factor 2 [Candidatus Aquiluna sp. IMCC13023]
gi|383298989|gb|EIC91604.1| chain release factor 2 [Candidatus Aquiluna sp. IMCC13023]
Length = 367
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 164/328 (50%), Gaps = 18/328 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N+WDD + V +L+ + + L+ L ++ K + EM D
Sbjct: 44 NIWDDQVNAQAVTTELSRTKAQLTQLEAL---GQDIKDLEAFKEMALEDKSAADEFALEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V+ LDQ E LL G D GA +++++G+ G +AE L+ MY+R+A+K G++
Sbjct: 101 ARVTSELDQLETQTLLNGEYDPRGAILSVRSGAGGDDATDFAEMLMRMYLRYAEKNGHKA 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V++ + G+KSAT+E +F YA+G LS E+G H L+ N + + + A ++VV
Sbjct: 161 KVLEISHSEGAGIKSATVEMDFPYAYGQLSIESGTHRLVRMSPFNAAGKRQTSFAAIEVV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ + + ++I D D+ +F S G+ + A I H PTGI V E++
Sbjct: 221 PV-MAVTESVEIPDSDIRIDVFRSSGPGGQSVNTTDSAVRITHTPTGIVVSCQNEKSQLQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN----IWQRETRRYVSHPYKLVQDVK 296
NK A+ L++KLL KR+ + W + R YV PY++V+D++
Sbjct: 280 NKASAMRVLQSKLL-----DAQRRADNEKRKELAGDVKASWGEQMRSYVLAPYQMVKDLR 334
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRR 324
T + + + V DG ++ FI + I R+
Sbjct: 335 TNYEENNPDDVFDGKLEGFIASGIRWRK 362
>gi|384515159|ref|YP_005710251.1| peptide chain release factor RF-2 [Corynebacterium ulcerans 809]
gi|334696360|gb|AEG81157.1| peptide chain release factor RF-2 [Corynebacterium ulcerans 809]
Length = 367
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 164/323 (50%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTGLRQRIDDIPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTAEIESLEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLEKKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 338 VNDPQKVLDGDIDGLLEAGIRWR 360
>gi|153810056|ref|ZP_01962724.1| hypothetical protein RUMOBE_00437 [Ruminococcus obeum ATCC 29174]
gi|149834234|gb|EDM89314.1| peptide chain release factor 2 [Ruminococcus obeum ATCC 29174]
Length = 335
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 164/331 (49%), Gaps = 29/331 (8%)
Query: 6 NLWDDPTKSNEVLVKLA---DSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRA 61
+ WD+ S + + +L D +++ ++L+ Q+ +ME I+ G +
Sbjct: 5 DFWDNAEVSQQKMKELKSMKDDMEIYHSLE------------TQMEDMETMIEMGYEEND 52
Query: 62 YRASLDVSKLLDQYE-------MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
++ ++LD+++ + LL G D E A + + AG+ G W L MY
Sbjct: 53 PEIIPEIQEMLDEFQKNFDSIRVKTLLSGEYDSENAIIKLNAGAGGTEACDWCGMLYRMY 112
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
RW D++G+ V+D GVKS T + E A+GYL E G H L+ N +
Sbjct: 113 SRWVDRKGFTMEVLDYLDGDEAGVKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGK 172
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + DV+P ++ D++I+D+D+ + S G+ + A I H PTGI
Sbjct: 173 RQTSFVSCDVMP-DIKKDLDVEINDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIV 231
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
VQ ER+ NK KA+ LKAKL ++ ++ + +S I+ E W + R YV PY
Sbjct: 232 VQCQNERSQHMNKDKAMQMLKAKLYLLKQQEAEAKLSGIRGEVTDIGWGNQIRSYVMQPY 291
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+V+D +T + + ++VLDG+I PFI A++
Sbjct: 292 TMVKDHRTSEETGNVDAVLDGDIDPFINAYL 322
>gi|227510661|ref|ZP_03940710.1| peptide chain release factor 2 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190313|gb|EEI70380.1| peptide chain release factor 2 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 354
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 164/335 (48%), Gaps = 25/335 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLK--------VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
WDD ++ + L+ + LK + N L DL+ E LI+ E D G+
Sbjct: 28 FWDD-QQAAQKLIDETNQLKTKRDRFDTLTNELDDLKVTLE---LIS-----EDPDSGMQ 78
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ + K LD+Y++ LL G D A + I G+ G + W LL MY RWA
Sbjct: 79 DEFIGEADKLKKQLDRYQLGLLLNGKYDHNNAILEIHPGAGGTEAQDWGSMLLRMYTRWA 138
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
+ ++ V+D + G+ S +I E A+GYL E G H L+ F + H
Sbjct: 139 ETHDFKVDVLDYQVGEVAGINSVSILINGENAYGYLRSEKGVHRLVRISPFDSAGRRH-T 197
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A VDV+P L+ ++IS ++L ++ + G+ + A I HIPTGI V S
Sbjct: 198 SFASVDVMPE-LDDDVSIKISPDELKVDVYRASGAGGQHVNKTSSAVRITHIPTGIVVAS 256
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
+R+ N+ ALN LK+KL + ++ + I+ E + W + R YV HPY +V
Sbjct: 257 QAQRSQLQNRQTALNMLKSKLYELEEQKKAEEKAKIEGEQLDIGWGSQIRSYVFHPYSMV 316
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D +T + + N V+DG++ PFI A++ + S D
Sbjct: 317 KDHRTNYETANVNGVMDGDLDPFINAYLQWQLSKD 351
>gi|333445914|ref|ZP_08480856.1| peptide chain release factor 2 [Leuconostoc inhae KCTC 3774]
Length = 380
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 154/320 (48%), Gaps = 8/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +++ + ++ +L +AEE L+ ++ + D + + +
Sbjct: 45 FWDDNVKAQKIIEENNVLKNRRDSFLNLTSQAEEIDLLIEMLSEDVTDSEMMSELEESIV 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K ++ Y + +LL P D A + + GS G W L MY RWA + G++
Sbjct: 105 KALKDIETYNLEQLLTEPYDANNAILEVHPGSGGTESTDWGANLYRMYTRWAQQHGFQVD 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D G+ SATI+ AFG+L E G H + F + H + VDV+
Sbjct: 165 VLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVRISPFDSAGRRH-TSFVSVDVM 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ + D++I D+D+ +F S G+ + + H PTGI V S ER +
Sbjct: 224 PE-LDDTIDIEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSSTVERTQYG 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK KL + E+ + + + + + N W + R YV HPY++V+D +T +
Sbjct: 283 NRDYAMRLLKGKLYQLELEKQEAERAALTGDKLENGWGSQIRSYVLHPYQMVKDHRTDYE 342
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
VLDG++ PFI A++
Sbjct: 343 TNQPQQVLDGDLDPFINAYL 362
>gi|160914511|ref|ZP_02076726.1| hypothetical protein EUBDOL_00517 [Eubacterium dolichum DSM 3991]
gi|158433669|gb|EDP11958.1| peptide chain release factor 2 [Eubacterium dolichum DSM 3991]
Length = 346
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 25/331 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA--------IDYGL 57
+ W DP + ++ +L N LKD+ E +L LA ME D +
Sbjct: 24 SFWSDPQHAQTLIQQL-------NGLKDVVESYE--QLDHALAGMEETLTLLKDDFDTEI 74
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
F+ ++ + +Q+E+ LL D A + + G+ G WA+ L MY RW
Sbjct: 75 FELLEMEYHEMEERFEQFELKMLLSHEYDHSNAILELHPGAGGTESCDWADMLYRMYSRW 134
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHE 174
A+K+GY+ V+D G+KS T E + A+GYL E G H L+ F +G H
Sbjct: 135 AEKKGYKVSVLDYLAGDEAGIKSITFLVEGDMAYGYLKAEKGVHRLVRISPFDSGGRRH- 193
Query: 175 ATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQ 231
+ A +DV+P F +++I EDL+ + G Q I K + I+ H PTG+
Sbjct: 194 TSFASLDVMPQF-NDEIEIEIRPEDLIVETKRASGAGGQHINKTDSAIRMVHKPTGLVAT 252
Query: 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKL 291
R+ N+ +AL LK+++ + E+ + ++ IK E N W + R YV HPY +
Sbjct: 253 CQNGRSQHENREEALRILKSRIYQKMIEEQEAKIAEIKGEQKANEWGSQIRSYVFHPYSM 312
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 322
V+D +TG + D SV+DGN+ FI A++ +
Sbjct: 313 VKDHRTGYETSDTQSVMDGNLDAFIFAYLKT 343
>gi|345016985|ref|YP_004819338.1| peptide chain release factor 2 [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032328|gb|AEM78054.1| peptide chain release factor 2 [Thermoanaerobacter wiegelii Rt8.B1]
Length = 368
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 160/322 (49%), Gaps = 7/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D KS E+ K +++ L K E+ + +L +E D + +
Sbjct: 44 FWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLNTLIELG-LEEGDESITDEVDKEYK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K L+ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 103 ELKKKLEDLKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFEVE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KS T+ + +A+GYL E G H L+ + + + A V+V+P
Sbjct: 163 TIDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
LE +++I EDL + + G+ + + A I H+PTGI V ER+ N
Sbjct: 223 -ELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQSERSQIQN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LKAKLL ++ ++ + +K E W + R YV PY LV+D +T +
Sbjct: 282 RETAMKMLKAKLLDLMMKEKKEKIEDLKGEHREAAWGNQIRSYVFQPYTLVKDHRTNYEE 341
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ N+V+DG I FI A++ +
Sbjct: 342 GNVNAVMDGEIDGFINAYLKQK 363
>gi|147834602|emb|CAN69654.1| hypothetical protein VITISV_010541 [Vitis vinifera]
Length = 426
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 173/330 (52%), Gaps = 12/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + ++ + + + +K+L + E + +LA E D L + +A
Sbjct: 95 DLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREEN-DPELESESLKAL 153
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + + E+ LL G +D + ++AG+ G WA ++ MY WA + GY
Sbjct: 154 LGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGV 213
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ + EY+FGY E G H L+ F +G H + A V V
Sbjct: 214 TVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 272
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ + S +QI++ DL F + G+ + + A I HIPTG+ ER+
Sbjct: 273 IPILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQH 332
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQDVKT 297
NK A+ L+++L + + Q + ++ +++ +I W + R YV HPY++V+D++T
Sbjct: 333 QNKASAMAVLQSRLDQLEISRQ--AQINAQHTQSLTDISWGNQIRTYVLHPYRMVKDLRT 390
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ D +SVL+G++ FI +++++ D
Sbjct: 391 NYEVSDPDSVLEGDLDGFILSYLSASLDKD 420
>gi|298244286|ref|ZP_06968092.1| peptide chain release factor 2 [Ktedonobacter racemifer DSM 44963]
gi|297551767|gb|EFH85632.1| peptide chain release factor 2 [Ktedonobacter racemifer DSM 44963]
Length = 337
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 168/325 (51%), Gaps = 7/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D K+ + +L + V + L + ++ + +A + E E D + ++
Sbjct: 4 DFWSDNRKAQAHMQQLNALREEVTTWEQLATQLKDLQELALMLEEEPDD-DMQAEVAQSI 62
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++ E + +L G +D + A ++I AGS G+ + WAE LL MY+RWAD+ +R
Sbjct: 63 HPIEEQIEKLEFALMLSGEHDEKNAILSIHAGSGGVDAQDWAEMLLRMYLRWADQHRFRT 122
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++ D + G+KSAT+E E +A+GYL E G H LI + + + + A V+++
Sbjct: 123 QIYDYSEGEEAGIKSATVEIEGRFAYGYLRSEAGTHRLIRLSPFDAAHRRQTSFAKVELM 182
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P +E + ++ I ED+ + S G+ + A ++H+P+GI V ER+
Sbjct: 183 P-DIENTIEISIRPEDIEVDTYRSTGAGGQHVNKTDSAVRMRHVPSGIVVTCQNERSQLQ 241
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL LKA+L + ++ + +K E + + + R + HPY + +D +T +
Sbjct: 242 NREVALKILKARLFELEQKKHDEEAARLKGEHVQADFGTQIRSVIVHPYNIAKDHRTNHE 301
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
D + L GN+ PFI A++ + S
Sbjct: 302 TSDTTAYLAGNVDPFIHAYLQEQAS 326
>gi|375093798|ref|ZP_09740063.1| peptide chain release factor 2 [Saccharomonospora marina XMU15]
gi|374654531|gb|EHR49364.1| peptide chain release factor 2 [Saccharomonospora marina XMU15]
Length = 384
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V +L+ + + DLR + ++ ++ +LA E D A
Sbjct: 59 NLWDDPEAAQKVTSQLSYRQAELRRVTDLRQRVDDLGVLYELAVAEG-DEASRSEAETEL 117
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ +D E+ LL G DV A VTI++ + G+ WAE LL MY+RWA++ GY
Sbjct: 118 SQLTRDVDALEVRTLLSGEYDVRNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHGYPT 177
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 178 EVYDISYAEEAGIRSATFKVSGPYIYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 237
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+ V D+++ ++ S G+ + A I H+PTGI V E++
Sbjct: 238 PEVEEVDHVDVPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKS 293
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+AKLL + + + ++ + W + R YV HPY+LV+D++T
Sbjct: 294 QLQNKAAAMKVLQAKLLQRKKAEERAELDALRDGG--SSWGNQMRSYVLHPYQLVKDLRT 351
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++VLDG + F++A I R+
Sbjct: 352 DYEVGNPSAVLDGELDGFLDAGIRWRK 378
>gi|410594195|ref|YP_006950922.1| peptide chain release factor [Streptococcus agalactiae SA20-06]
gi|421531563|ref|ZP_15977944.1| peptide chain release factor 2 [Streptococcus agalactiae
STIR-CD-17]
gi|403643237|gb|EJZ04022.1| peptide chain release factor 2 [Streptococcus agalactiae
STIR-CD-17]
gi|410517834|gb|AFV71978.1| Peptide chain release factor [Streptococcus agalactiae SA20-06]
Length = 337
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 11/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + +L + + +++ ++E +L L EM D L +
Sbjct: 16 DFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETEL---LLEMLDEDDSLKEELEENL 72
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K++D YEM+ LL P D A + I GS G + W + LL MY R+ + G++
Sbjct: 73 MQLDKIMDAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNANGFKV 132
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D G+KS T+ FE A+G L E G H L+ F + H + A V+V
Sbjct: 133 EVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFASVEV 191
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ + ++++ D+D+ F S G+ + + HIPTGI V S +R +
Sbjct: 192 MPE-LDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDRTQY 250
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L+AKL + E+ V +K + W + R YV PY +V+D +T
Sbjct: 251 GNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYTMVKDHRTNF 310
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+L + V+DG I FI+A++ R
Sbjct: 311 ELAQVDKVMDGEINGFIDAYLKWR 334
>gi|339007037|ref|ZP_08639612.1| peptide chain release factor 2 [Brevibacillus laterosporus LMG
15441]
gi|338776246|gb|EGP35774.1| peptide chain release factor 2 [Brevibacillus laterosporus LMG
15441]
Length = 327
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 162/324 (50%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + + L ++ +++ +L +E D L Y+++
Sbjct: 5 DFWDDNDVAQKTIGELNGIKSLTDTMGRLDASYDDLQMMLELV-IEEGDSSLISDLYQST 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K + +E+ LL D A + + G+ G + W LL MY RWA+++G++
Sbjct: 64 QDLKKNFEDFELELLLSDQYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D G+KS T+ + A+GYL E G H L+ F H + ++C +V
Sbjct: 124 ETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-NV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P +E ++ I EDL + S G+ + A I H+PTGI V ER+
Sbjct: 183 LP-EIENDKEVDIRTEDLKIDTYRSSGAGGQHINTTDSAVRITHLPTGIVVTCQTERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L KL + ++ ++ I+ E W + R YV HPY +V+D +T +
Sbjct: 242 KNRDRAMKMLLGKLFELQKQEQEKTLASIQGEQKDIAWGSQIRSYVFHPYSMVKDHRTNM 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG + PFI+A++ S+
Sbjct: 302 EVGNVQAVMDGELDPFIDAYLRSQ 325
>gi|333398790|ref|ZP_08480603.1| peptide chain release factor 2 [Leuconostoc gelidum KCTC 3527]
Length = 372
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 153/320 (47%), Gaps = 8/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +++ + ++ +L +AEE L+ ++ + D + +
Sbjct: 45 FWDDNVKAQKIIEENNVLKNRRDSFLNLTNQAEEIDLLIEMLSEDVTDSEMMTELEESIA 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K ++ Y + +LL P D A + + GS G W L MY RWA + G++
Sbjct: 105 KAQKDIETYNLEQLLTEPYDANNAILEVHPGSGGTESTDWGANLYRMYTRWAQQHGFQVD 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D G+ SATI+ AFG+L E G H + F + H + VDV+
Sbjct: 165 VLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVRISPFDSAGRRH-TSFVSVDVM 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ + D++I D+D+ +F S G+ + + H PTGI V S ER +
Sbjct: 224 PE-LDDTIDVEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSSTVERTQYG 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK KL + E+ + + + + + N W + R YV HPY++V+D +T +
Sbjct: 283 NRDYAMRLLKGKLYQLELEKQEAERAALTGDKLENGWGSQIRSYVLHPYQMVKDHRTDYE 342
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
VLDG++ PFI A++
Sbjct: 343 TNQPQQVLDGDLDPFINAYL 362
>gi|191637822|ref|YP_001986988.1| peptide chain release factor 2 (RF-2) [Lactobacillus casei BL23]
gi|190712124|emb|CAQ66130.1| Peptide chain release factor 2 (RF-2) [Lactobacillus casei BL23]
Length = 332
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 134/260 (51%), Gaps = 8/260 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LD+YEM LL GP D A + I G+ G + W L+ MY RWAD+ G++
Sbjct: 65 DLQEKLDKYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQNGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V D G+KS T+ E A+G L E G H L+ F + H + A VDV+
Sbjct: 125 VADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRH-TSFASVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ S ++ + ED+ +F S G+ + A + H+PTGI S +R+ F
Sbjct: 184 PE-LDNSIEVDLRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQAQRSQFQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ LKAKL E + I+ E + + R YV HPY +V+D +T +
Sbjct: 243 NKATAMAMLKAKLYQREEEAKRAKAKAIQGEQKDVAFGSQIRSYVFHPYTMVKDHRTNYE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ N+V+DG++ PFI A++
Sbjct: 303 TGNGNAVMDGDLNPFINAYL 322
>gi|294102045|ref|YP_003553903.1| hypothetical protein [Aminobacterium colombiense DSM 12261]
gi|293617025|gb|ADE57179.1| hypothetical protein Amico_1055 [Aminobacterium colombiense DSM
12261]
Length = 368
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 14/327 (4%)
Query: 6 NLW--DDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
+ W D+ K + L + D L ++ K + E+ ++I ++ + E D L K +
Sbjct: 44 DFWGSDEARKVTQELARYQDKL---DSWKKIAEDYEDLEIIEEMLKEEE-DRELQKDFEQ 99
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + K +++ ++ +LL D A V++ AGS G+ + WAE L MY RW ++ +
Sbjct: 100 KAFSLKKEIERQQLIELLSEDYDQGNAIVSVHAGSGGLDSQDWAEMLYRMYARWMEQNDF 159
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
R +V+D GG+ + T+ E YA+GYL E G H L+ F + H + A V
Sbjct: 160 RVKVLDLIKDSEGGISNVTLLVEGSYAYGYLKSEKGVHRLVRISPFDSAGRRH-TSFASV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
D+VP E D++I EDL + S G+ ++ A I H P+GI V ER+
Sbjct: 219 DIVPELPE-DEDIEIRTEDLRIDTYRSSGAGGQHVNMTDSAVRITHFPSGIVVSCQNERS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ LK+KL E+ + + I E W + R YV HPY LV+D +T
Sbjct: 278 QHMNKAVAMQVLKSKLYERAIEERRNEMDTIIGEKKEISWGSQIRSYVLHPYTLVKDHRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
G + + +VLDG+I FI A++ ++
Sbjct: 338 GEETGNVQAVLDGDIDDFIMAYLRWKK 364
>gi|431795281|ref|YP_007222186.1| peptide chain release factor 2 (bRF-2) [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785507|gb|AGA70790.1| bacterial peptide chain release factor 2 (bRF-2)
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 368
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 159/321 (49%), Gaps = 6/321 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD P + +V+ +++ + + LR + ++ + QLA +E D L
Sbjct: 43 DFWDHPESAQKVMQEISYHQEKLKTYTSLRQQLDDLLTLYQLA-VEENDESLEPEIEEGV 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++L+ E+ LL GP D A +T+ AG+ G + W L MYVR+ ++ GY+
Sbjct: 102 KALQQVLEGLELEILLSGPYDRNNAILTLHAGAGGTEAQDWVSMLYRMYVRYGERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ E A+GYL E G H L+ + S + A +DV+
Sbjct: 162 ETMDLLPGDEAGIKSATLSISGENAYGYLKSEKGVHRLVRISPFDASGRRHTSFASMDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ ++ I EDL + + G+ + A I H+PTGI VQS ER+
Sbjct: 222 PEVMDDGEEVPIPTEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQSERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ + L+AKLL + +Q +S I+ E W + R YV HPY +V+D +T +
Sbjct: 282 NRAYCMRILQAKLLELKRKQQEDEISEIRGEQQEIAWGSQIRSYVFHPYNMVKDHRTNEE 341
Query: 301 LPDFNSVLDGNIKPFIEAHIN 321
+ +V+DG I FI +++
Sbjct: 342 TSNTGAVMDGEIDQFIASYLQ 362
>gi|406600644|ref|YP_006745990.1| peptide chain release factor 2 [Leuconostoc gelidum JB7]
gi|406372179|gb|AFS41104.1| peptide chain release factor 2 [Leuconostoc gelidum JB7]
Length = 333
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 153/320 (47%), Gaps = 8/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +++ + ++ +L +AEE L+ ++ + D + +
Sbjct: 6 FWDDNVKAQKIIEENNVLKNRRDSFLNLTNQAEEIDLLIEMLSEDVTDSEMMTELEESIA 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K ++ Y + +LL P D A + + GS G W L MY RWA + G++
Sbjct: 66 KAQKDIETYNLEQLLTEPYDANNAILEVHPGSGGTESTDWGANLYRMYTRWAQQHGFQVD 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D G+ SATI+ AFG+L E G H + F + H + VDV+
Sbjct: 126 VLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVRISPFDSAGRRH-TSFVSVDVM 184
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ + D++I D+D+ +F S G+ + + H PTGI V S ER +
Sbjct: 185 PE-LDDTIDVEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSSTVERTQYG 243
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK KL + E+ + + + + + N W + R YV HPY++V+D +T +
Sbjct: 244 NRDYAMRLLKGKLYQLELEKQEAERAALTGDKLENGWGSQIRSYVLHPYQMVKDHRTDYE 303
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
VLDG++ PFI A++
Sbjct: 304 TNQPQQVLDGDLDPFINAYL 323
>gi|407980384|ref|ZP_11161173.1| peptide chain release factor RF2 [Bacillus sp. HYC-10]
gi|407412865|gb|EKF34620.1| peptide chain release factor RF2 [Bacillus sp. HYC-10]
Length = 327
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 163/327 (49%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D K+ V + A++LK VN +L EE ++ L + E D L +
Sbjct: 5 DFWNDQQKAQGV-INEANALKDYVNTYHELSESHEELQMTHDLLK-EDYDEELHAELEKE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKSLTKQFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F E D+ I ED+ + + G+ + A I HIPT + V ER+
Sbjct: 182 VMPEFNE-EIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHIPTNVVVTCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+ LK+KL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 241 IKNRERAMKMLKSKLYQKRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + +V+DG++ FI+A++ S+ S
Sbjct: 301 TEMGNVQAVMDGDLDSFIDAYLRSKLS 327
>gi|389574968|ref|ZP_10165019.1| peptide chain release factor RF2 [Bacillus sp. M 2-6]
gi|388425392|gb|EIL83226.1| peptide chain release factor RF2 [Bacillus sp. M 2-6]
Length = 327
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 164/327 (50%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D K+ V + A++LK VN +L +E ++ L + E D L +
Sbjct: 5 DFWNDQQKAQGV-INEANALKDYVNTYHELSESHDELQMTHDLLK-EDYDEDLHAELEKE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKNLTKQFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P F E D+ I ED+ + + G+ + A I HIPT + V ER+
Sbjct: 182 VMPEFNE-EIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHIPTNVVVTCQTERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
N+ +A+ LK+KL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 241 IKNRERAMKMLKSKLYQKRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTN 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + +V+DG++ FI+A++ S+ S
Sbjct: 301 TEMGNVQAVMDGDLDSFIDAYLRSKLS 327
>gi|225450605|ref|XP_002277995.1| PREDICTED: peptide chain release factor 2-like [Vitis vinifera]
Length = 434
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 173/330 (52%), Gaps = 12/330 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + ++ + + + +K+L + E + +LA E D L + +A
Sbjct: 103 DLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREEN-DPELESESLKAL 161
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + + E+ LL G +D + ++AG+ G WA ++ MY WA + GY
Sbjct: 162 LGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGV 221
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ + EY+FGY E G H L+ F +G H + A V V
Sbjct: 222 TVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 280
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ + S +QI++ DL F + G+ + + A I HIPTG+ ER+
Sbjct: 281 IPILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQH 340
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQDVKT 297
NK A+ L+++L + + Q + ++ +++ +I W + R YV HPY++V+D++T
Sbjct: 341 QNKASAMAVLQSRLDQLEISRQ--AQINAQHTQSLTDISWGNQIRTYVLHPYRMVKDLRT 398
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ D +SVL+G++ FI +++++ D
Sbjct: 399 NYEVSDPDSVLEGDLDGFILSYLSASLDKD 428
>gi|254776429|ref|ZP_05217945.1| peptide chain release factor 2 [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 370
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 172/335 (51%), Gaps = 22/335 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------AQLAEMEAIDYGLF 58
LWDD ++ V +L+ + + +++LR + ++ ++ + A +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEEGEGAAEALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTC 274
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK+ A+ L+AKLL + + + +K E + W + R YV HPY++V
Sbjct: 275 QNEKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLHPYQMV 333
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D++T ++ + +VLDG+I F+EA I R D
Sbjct: 334 KDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 368
>gi|118467007|ref|YP_883159.1| peptide chain release factor 2 [Mycobacterium avium 104]
gi|166225107|sp|A0QJS1.1|RF2_MYCA1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|118168294|gb|ABK69191.1| peptide chain release factor 2 [Mycobacterium avium 104]
Length = 370
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 172/335 (51%), Gaps = 22/335 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------AQLAEMEAIDYGLF 58
LWDD ++ V +L+ + + +++LR + ++ ++ + A +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEEGEGAAEALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTC 274
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK+ A+ L+AKLL + + + +K E + W + R YV HPY++V
Sbjct: 275 QNEKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLHPYQMV 333
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D++T ++ + +VLDG+I F+EA I R D
Sbjct: 334 KDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 368
>gi|307702035|ref|ZP_07639043.1| peptide chain release factor 2 [Streptococcus mitis NCTC 12261]
gi|307616680|gb|EFN95869.1| peptide chain release factor 2 [Streptococcus mitis NCTC 12261]
Length = 329
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHEELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TNFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|217077931|ref|YP_002335649.1| peptide chain release factor 2 [Thermosipho africanus TCF52B]
gi|419760522|ref|ZP_14286797.1| peptide chain release factor 2 [Thermosipho africanus H17ap60334]
gi|226739131|sp|B7IE81.1|RF2_THEAB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|217037786|gb|ACJ76308.1| peptide chain release factor 2 [Thermosipho africanus TCF52B]
gi|407514360|gb|EKF49187.1| peptide chain release factor 2 [Thermosipho africanus H17ap60334]
Length = 369
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 15/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D K+ E+ K K+++ +KD+ K E+ +L++ D +
Sbjct: 44 DFWSDQRKAREISQKAQRIRKIIDDMKDIEAKFEDLDAAIELSDE---DQSFVETIKEMV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K + +E+ +L G D A +TI G+ G + WA LL MY+RWA+++G+
Sbjct: 101 EEIEKKVKTFELELILNGKFDASNAYLTIHPGAGGTESQDWASMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++VD + G+KSA I + +YA+GYL E G H L+ + + + A V+V+
Sbjct: 161 QIVDYQPGEEAGIKSAMIYIKGDYAYGYLKYERGVHRLVRISPFDANKRRHTSFASVNVI 220
Query: 184 PLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
P + DL+I + + G+ + + A I HIPTGI V ER+
Sbjct: 221 PEIDDDIDIEINPEDLRID----TYRASGAGGQYVNKTESAVRITHIPTGIVVTCQTERS 276
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK AL LKA+L + E+ + I+ E W + R YV PY +V+D +T
Sbjct: 277 QLQNKETALKVLKARLYQLELEKRQKQLEEIQGELKDISWGNQIRSYVFQPYTMVKDHRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
++ + ++V+DG I FIE+ +
Sbjct: 337 NVETGNIDAVMDGEIDIFIESEL 359
>gi|196231602|ref|ZP_03130460.1| peptide chain release factor 2 [Chthoniobacter flavus Ellin428]
gi|196224455|gb|EDY18967.1| peptide chain release factor 2 [Chthoniobacter flavus Ellin428]
Length = 350
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 166/320 (51%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W + ++ + + +++ + L L + E+ ++ +LA EA D K +
Sbjct: 5 DFWANKERAQKNVEEVSTLRNKIGPLLTLDRQIEDLPVLIELAR-EANDETSVKEVEKEY 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L ++E+ LL GPND A +TI +G+ G WA+ LL MY RW ++ G++
Sbjct: 64 GVIQNGLAEFELKMLLNGPNDRYNAFLTINSGAGGTESCDWADMLLRMYQRWIERHGFKS 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T++ EYAFGYL+ E G H L+ + + + A VDVV
Sbjct: 124 EVMDIQLGEEAGIKSCTLKVAGEYAFGYLATERGVHRLVRISPFDANKRRHTSFAGVDVV 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P E++P ++I++ D+ + S G+ + + A I+HIPTGI ER+
Sbjct: 184 PELPESAP-IEINEADIEVDTYRSGGKGGQNVNKVETAVRIRHIPTGIVAACQNERSQQK 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK+ A+ L+AKL I ++ + + E + + R YV PY+ V D++TG+
Sbjct: 243 NKVTAMRMLQAKLQQIEVDKMAAETAAAYGEKADVSFGSQIRSYVFQPYQKVLDLRTGVD 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++V+DG+I FI+ +
Sbjct: 303 TSNISAVMDGDIDAFIQGKL 322
>gi|387816401|ref|YP_005676745.1| peptide chain release factor 2 [Clostridium botulinum H04402 065]
gi|322804442|emb|CBZ01992.1| peptide chain release factor 2 [Clostridium botulinum H04402 065]
Length = 325
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D A +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNAIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++V+P L +++I EDL + + G+ + + A I H+PTGI VQ
Sbjct: 175 SFASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKERIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYL 321
>gi|168185950|ref|ZP_02620585.1| peptide chain release factor 2 [Clostridium botulinum C str.
Eklund]
gi|169295927|gb|EDS78060.1| peptide chain release factor 2 [Clostridium botulinum C str.
Eklund]
Length = 326
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 6/249 (2%)
Query: 73 DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCC 132
D +++ LL G D A V++ +G+ G + W E LL MY RWA+K+GY+ +D
Sbjct: 71 DDFKVQILLSGEYDKNNAIVSLHSGAGGTDAQDWTEMLLRMYTRWAEKKGYKVDTIDILP 130
Query: 133 CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETS 190
G+KSA+++ E+A+GYL E G H L+ N + + + A ++V+P E +
Sbjct: 131 GDEAGIKSASLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVIPELRE-N 189
Query: 191 PDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALN 247
D++I +DL + + G+ + A I HIPTGI VQS ER+ F NK A++
Sbjct: 190 QDIEIKADDLRVDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQSERSQFQNKDTAMS 249
Query: 248 RLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSV 307
LK+KL+ + + + + W + R YV PY +V+D +T ++ + ++V
Sbjct: 250 MLKSKLIELKERAHKEKIEDLSGDLKEIGWGSQIRSYVFQPYTMVKDHRTNTEMGNVDAV 309
Query: 308 LDGNIKPFI 316
+DG+I FI
Sbjct: 310 MDGDIDNFI 318
>gi|210615399|ref|ZP_03290526.1| hypothetical protein CLONEX_02742 [Clostridium nexile DSM 1787]
gi|210150248|gb|EEA81257.1| hypothetical protein CLONEX_02742 [Clostridium nexile DSM 1787]
Length = 313
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 161/314 (51%), Gaps = 22/314 (7%)
Query: 16 EVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRASLDVSKLLDQ 74
E + +L S + + L ++ Y + L+ ++ +E+ A F++ Y ++
Sbjct: 12 EKVSQLTTSYEDIGVLIEMAYDENDESLLPEIESELTA-----FQQGY----------EE 56
Query: 75 YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK 134
+ LL G D + A VT+ AG+ G WA L MY RWA+++G+ V+D
Sbjct: 57 IRIQTLLSGEYDKDNAIVTLHAGAGGTESCDWANMLYRMYTRWAERKGFSVEVLDFLDGD 116
Query: 135 NGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPD 192
G+K+ T + E A+GYL E G H L+ N + + + A DVVP +E D
Sbjct: 117 VAGLKAVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFASCDVVP-DIEDDID 175
Query: 193 LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRL 249
++++D+DL + + G+ + A I HIPTGI VQ ER+ NK KA+ L
Sbjct: 176 IELNDDDLKIDTYRASGAGGQHVNKTSSAIRITHIPTGIVVQCQNERSQHNNKEKAMQML 235
Query: 250 KAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLD 309
KAKL ++ ++ VS I+ E + + R YV PY LV+D +T ++ + +SVLD
Sbjct: 236 KAKLYLLKEQEQAEKVSDIRGEIKEIGFGNQIRSYVMQPYTLVKDHRTNVESGNVSSVLD 295
Query: 310 GNIKPFIEAHINSR 323
GNI F+ A++ ++
Sbjct: 296 GNIDLFMNAYLKAQ 309
>gi|121996859|ref|YP_001001646.1| peptide chain release factor 2 [Halorhodospira halophila SL1]
gi|121588264|gb|ABM60844.1| bacterial peptide chain release factor 2 (bRF-2) [Halorhodospira
halophila SL1]
Length = 291
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 141/261 (54%), Gaps = 8/261 (3%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
V+ ++ E ++ G D A + I+AGS G + WAE LL MY+RWA+ G+ V
Sbjct: 31 VAGQVETLEFRRMFSGEMDTSNAFLDIQAGSGGTEAQDWAEMLLRMYLRWAEARGFETEV 90
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVP 184
++ + GVKSATI+ EYAFG+L ETG H L+ F +G H + + V V P
Sbjct: 91 IEVTAGQEAGVKSATIKVSGEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSVFVSP 149
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
E + D++I DL +F + G+ + + A I H PTGI VQS +R+ N
Sbjct: 150 EIDEENVDIEIDPSDLRVDVFRASGAGGQHVNTTESAVRITHEPTGIVVQSQNDRSQHKN 209
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+++L+AKL + ++ + + W + R YV + ++D++TG+++
Sbjct: 210 RATAMSQLRAKLYELEMQRRRAEAEAQEDTKSDIGWGNQIRSYVLDQSR-IKDLRTGVEI 268
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ +VLDG++ PFI+A + +
Sbjct: 269 GNTQAVLDGHLDPFIQASLKA 289
>gi|448824121|ref|YP_007417290.1| peptide chain release factor RF-2 [Corynebacterium urealyticum DSM
7111]
gi|448277618|gb|AGE37042.1| peptide chain release factor RF-2 [Corynebacterium urealyticum DSM
7111]
Length = 378
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 171/330 (51%), Gaps = 16/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-------DYGLF 58
+LWDDP + +V +L+ + +++LR + E+ ++ +AE EA D
Sbjct: 43 SLWDDPDHAQQVTSELSRVQAKLKKIRELRQRLEDLPVLYNMAEEEAAEDPAASEDAVAM 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
R++L + ++ E++ +L G D A V I++G+ G+ WAE LL MY RWA
Sbjct: 103 AEEERSALRAA--IESLEITTMLSGEYDQREALVNIRSGAGGVDAADWAEMLLRMYTRWA 160
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ G++ + D + G+KSAT +Y +G LS E GAH L+ + + +
Sbjct: 161 EQHGHKVDIYDISYAEEAGIKSATFVIHGDYMYGTLSVEQGAHRLVRISPFDNQGRRQTS 220
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V+V+P+ +E + +++ D D+ ++ S G+ + A + HIPTGI V
Sbjct: 221 FAEVEVLPV-VEQTDSIEVPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQ 279
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
E++ NK A+ L+AKLL ++ + + + + W + R YV HPY++V+
Sbjct: 280 NEKSQIQNKASAMRVLQAKLLEKKRQEEKAEMDALGAGGNAS-WGNQMRSYVLHPYQMVK 338
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
D++T ++ D VLDG++ IEA I R
Sbjct: 339 DLRTEYEVGDPQKVLDGDLDGLIEAGIRWR 368
>gi|383828737|ref|ZP_09983826.1| peptide chain release factor 2 [Saccharomonospora xinjiangensis
XJ-54]
gi|383461390|gb|EID53480.1| peptide chain release factor 2 [Saccharomonospora xinjiangensis
XJ-54]
Length = 368
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 163/327 (49%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + + +LR + ++ ++ +LAE E D
Sbjct: 43 DLWNDPETAQKVTSQLSHKQASLRKVTELRQRVDDLTVLHELAEAEG-DAASRSEVETEF 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+S+ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AGLSRDIDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHDYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
+V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 162 QVYDISYAEEAGIRSATFKVSGPYLYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 221
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+ V D+++ ++ S G+ + A I H+PTGI V E++
Sbjct: 222 PEVEEVDHVEVPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L+AKLL E+ + ++ + W + R YV HPY+LV+D++T
Sbjct: 278 QLQNKASAMKVLQAKLLQRKKEEERKELDALRDSG--SSWGNQMRSYVLHPYQLVKDLRT 335
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++VLDG + F+EA I R+
Sbjct: 336 EHEVGNPSAVLDGELDGFLEAGIRWRK 362
>gi|417848117|ref|ZP_12494069.1| peptide chain release factor 2 [Streptococcus mitis SK1073]
gi|339455142|gb|EGP67750.1| peptide chain release factor 2 [Streptococcus mitis SK1073]
Length = 329
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHEELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|317121051|ref|YP_004101054.1| peptide chain release factor 2 (bRF-2) [Thermaerobacter marianensis
DSM 12885]
gi|315591031|gb|ADU50327.1| bacterial peptide chain release factor 2 (bRF-2) [Thermaerobacter
marianensis DSM 12885]
Length = 416
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 164/321 (51%), Gaps = 7/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+P ++ + + +L V + L + ++ +++A+LA EA D +
Sbjct: 43 SFWDEPDRAQQQVRQLKVLKGPVEHYEALERQLDDLQVLAELAAEEA-DVSVIPELEEGI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L Q E+ LL GP D A V++ G+ G + WA+ L MY RWA+ GY+
Sbjct: 102 AKAEEGLRQLELDLLLNGPYDGYDAIVSLHPGAGGTESQDWAQMLWRMYTRWAEDHGYQV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T A+GYL E G H L+ + + + A VDV+
Sbjct: 162 EVLDLLEGEEAGIKSVTFAVRGPNAYGYLRSEHGVHRLVRISPFDAAGRRHTSFASVDVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L SP+++I EDL +F + G+ + + A I H+PTGI ER+ A
Sbjct: 222 P-DLGDSPEIEIRPEDLRIDVFRAGGHGGQHVNKTESAVRIVHLPTGIVATCQNERSQHA 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKA+L EQ + ++ ++ + W + R YV PY LV+D +TG++
Sbjct: 281 NRETAMKILKARLARYYEEQRLKEIAALRGDVGEIAWGNQIRSYVFQPYTLVKDHRTGVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHIN 321
+ + +V+DG++ PFI A++
Sbjct: 341 VGNVQAVMDGHLDPFINAYLR 361
>gi|356571075|ref|XP_003553706.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 466
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 18/335 (5%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDP ++ ++ + L +K VNA + + E +I +LA E D L +
Sbjct: 138 DLWDDPVRAGKISREHGSLLGKMKEVNAFE--QELLEHIDMI-KLAREEN-DADLESESL 193
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+A L++ + + E+ LL G D + ++AG+ G WA ++ MY WA + G
Sbjct: 194 KALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQQRG 253
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y+ VVD+ + G+K ATI+ + E+AFGY E G H L+ F + H + A
Sbjct: 254 YKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRH-TSFAA 312
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V V+P+ + S +QI++ DL F + G+ + + A I HIPTG+ ER
Sbjct: 313 VAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNER 372
Query: 237 NHFANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNI-WQRETRRYVSHPYKLVQD 294
+ NK A+ L+++L + + Q N +++ +I W + R YV HPY++V+D
Sbjct: 373 SQHQNKASAMAVLQSRLDQLEMARQAQFNAQHT--QSLTDITWGSQIRSYVLHPYRMVKD 430
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
++T ++ D +SVL+G++ FI +++++ D D
Sbjct: 431 LRTNYEVSDPDSVLEGDLDSFILSYLSASLDKDDD 465
>gi|172041186|ref|YP_001800900.1| peptide chain release factor 2 [Corynebacterium urealyticum DSM
7109]
gi|171852490|emb|CAQ05466.1| peptide chain release factor RF-2 [Corynebacterium urealyticum DSM
7109]
Length = 377
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 171/330 (51%), Gaps = 16/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-------DYGLF 58
+LWDDP + +V +L+ + +++LR + E+ ++ +AE EA D
Sbjct: 43 SLWDDPDHAQQVTSELSRVQAKLKKIRELRQRLEDLPVLYNMAEEEAAEDPAASEDAVAM 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
R++L + ++ E++ +L G D A V I++G+ G+ WAE LL MY RWA
Sbjct: 103 AEEERSALRAA--IESLEITTMLSGEYDQREALVNIRSGAGGVDAADWAEMLLRMYTRWA 160
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ G++ + D + G+KSAT +Y +G LS E GAH L+ + + +
Sbjct: 161 EQHGHKVDIYDISYAEEAGIKSATFVIHGDYMYGTLSVEQGAHRLVRISPFDNQGRRQTS 220
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V+V+P+ +E + +++ D D+ ++ S G+ + A + HIPTGI V
Sbjct: 221 FAEVEVLPV-VEQTDSIEVPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQ 279
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
E++ NK A+ L+AKLL ++ + + + + W + R YV HPY++V+
Sbjct: 280 NEKSQIQNKASAMRVLQAKLLEKKRQEEKAEMDALGAGGNAS-WGNQMRSYVLHPYQMVK 338
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
D++T ++ D VLDG++ IEA I R
Sbjct: 339 DLRTEYEVGDPQKVLDGDLDGLIEAGIRWR 368
>gi|239828320|ref|YP_002950944.1| hypothetical protein GWCH70_3007 [Geobacillus sp. WCH70]
gi|239808613|gb|ACS25678.1| hypothetical protein GWCH70_3007 [Geobacillus sp. WCH70]
Length = 367
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 166/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
N WDD K+ + ++ A++LK +V + L + E ++ +L + E D L +
Sbjct: 45 NFWDD-QKAAQTVINEANALKDLVGEFQSLEERFENLEVTYELIKEEP-DEDLQQELVAE 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ ++K ++E+ LL P D A + + G+ G + WA LL MY RWA+K+G++
Sbjct: 103 AKKLTKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGFK 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + GVKS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 163 VETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 221
Query: 182 VVPLFLETSPDLQISDEDL-----LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+P E D++I + S G+ + A I HIPTGI V ER
Sbjct: 222 VMP---EMDDDIEIEIRPEEIKVDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQSER 278
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ KA+N LKAKL E+ + ++ I+ E W + R YV HPY LV+D +
Sbjct: 279 SQIKNREKAMNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWGNQIRSYVFHPYSLVKDHR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T +++ + +V+DG I FI+A++ S+
Sbjct: 339 TNVEVGNVQAVMDGEIDIFIDAYLRSK 365
>gi|365851223|ref|ZP_09391663.1| peptide chain release factor 2 [Lactobacillus parafarraginis F0439]
gi|363717255|gb|EHM00635.1| peptide chain release factor 2 [Lactobacillus parafarraginis F0439]
Length = 368
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 160/332 (48%), Gaps = 17/332 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKD----LRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
WD+ E KL D + KD L + E+ K+ +L E + D G+
Sbjct: 42 FWDN----QEAAQKLIDETNQMKTKKDNFTKLASELEDLKVTFELIEDDP-DAGMQNDFV 96
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ + K LDQY++ LL G D A + I G+ G + W LL MY RWA+
Sbjct: 97 TEAEKLKKQLDQYQLGLLLNGRYDHNNAILEIHPGAGGTEAQDWGSMLLRMYTRWAEAHH 156
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+ S ++ E A+GYL E G H L+ F + H + A
Sbjct: 157 FKVDVLDYQVGDVAGINSVSVLISGENAYGYLRSEKGVHRLVRISPFDSAGRRH-TSFAS 215
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
VDV+P L ++ I+ +DL ++ S G+ + A I HIPTGI V S +R
Sbjct: 216 VDVMPE-LNDDVEININPDDLRVDVYRSSGAGGQHINKTSSAVRITHIPTGIVVASQAQR 274
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ A+N LK+KL + ++ + I+ E + W + R YV HPY +V+D +
Sbjct: 275 SQLQNRQTAMNMLKSKLYELEQQKKAEEKAKIEGEQLDIGWGSQIRSYVFHPYSMVKDHR 334
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
T + + + V+DG++ PFI A++ + S D
Sbjct: 335 TNYETSNVDGVMDGDLDPFINAYLQWQLSQDN 366
>gi|269792424|ref|YP_003317328.1| peptide chain release factor 2 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100059|gb|ACZ19046.1| bacterial peptide chain release factor 2 (bRF- 2)
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 374
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 161/313 (51%), Gaps = 7/313 (2%)
Query: 14 SNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLD 73
S EV +L+ + + L + E+ + +A+L + D L + Y + ++ + L+
Sbjct: 51 STEVARELSQLQQRRESFSALEREMEDLETLAELLQA-GEDEDLSREFYDRAAEMERRLE 109
Query: 74 QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCC 133
+ ++ LL D A V I AG+ G+ + WAE L MYVRWA++ G++ RV+D+
Sbjct: 110 RTQVLTLLDEEYDRSDAIVGIHAGAGGLDSQDWAEMLYRMYVRWAERNGFKVRVLDELPD 169
Query: 134 KNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSP 191
+ G+KS T + EYA+GYL GE G H L+ + + + A V+V+P+ L
Sbjct: 170 QEAGIKSVTFQVSGEYAYGYLKGERGVHRLVRISPFDAAKRRHTSFASVEVMPV-LPDDV 228
Query: 192 DLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNR 248
+++I ED+ F + G+ ++ A I HIPTGI V ER+ N+ AL
Sbjct: 229 EIEIRPEDIKMDTFRASGAGGQYVNMTDSAVRITHIPTGIVVSCQVERSQHMNRATALQM 288
Query: 249 LKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVL 308
LK+KL + + I+ E W + R Y P++LV+D ++G ++ + +VL
Sbjct: 289 LKSKLFERQLRERQEQLEAIQGEKRAISWGSQIRSYTLQPFQLVKDHRSGCEIGNVQAVL 348
Query: 309 DGNIKPFIEAHIN 321
DG++ + A++
Sbjct: 349 DGDLDDLMMAYLK 361
>gi|251782076|ref|YP_002996378.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390705|dbj|BAH81164.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 331
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 165/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + ++ KL + +++ ++E +L ++ E + K AS
Sbjct: 9 DFWNDNIAAQKISQKLNELKSTYETFHNMQELSDETELYLEMLEED----DSVKDDLEAS 64
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 65 LETLGQILASYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 124
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ FE A+G L E G H L+ F + H + V+
Sbjct: 125 VETLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFVSVE 183
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 184 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQ 242
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + E+ + V+ +K + W + R YV PY +V+D +T
Sbjct: 243 YGNRDRAIKMLQAKLYQLEQEKKAAEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 302
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I+ FI+A++ R S D
Sbjct: 303 YEVAQVDKVMDGDIEGFIDAYLKWRMSDD 331
>gi|294791755|ref|ZP_06756903.1| peptide chain release factor 2 [Veillonella sp. 6_1_27]
gi|294793616|ref|ZP_06758753.1| peptide chain release factor 2 [Veillonella sp. 3_1_44]
gi|416999056|ref|ZP_11939725.1| peptide chain release factor 2 [Veillonella parvula
ACS-068-V-Sch12]
gi|294455186|gb|EFG23558.1| peptide chain release factor 2 [Veillonella sp. 3_1_44]
gi|294456985|gb|EFG25347.1| peptide chain release factor 2 [Veillonella sp. 6_1_27]
gi|333977209|gb|EGL78068.1| peptide chain release factor 2 [Veillonella parvula
ACS-068-V-Sch12]
Length = 330
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 157/320 (49%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P K+ E+ + V + K L E+A ++ ++A ++ D +
Sbjct: 5 TFWDNPDKAREISQEATQLKNAVESYKQLVSDIEDANMMLEMA-IDEDDLSMESEIKEYV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L++ E+ LL G D A +T AG+ G + W L+ MY+RWA+K G+
Sbjct: 64 KQIEETLEKQEVLLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWAEKSGFSI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D+ G+KSAT + E AFGYL E G H L+ + + + A VDV+
Sbjct: 124 ELMDEQPGDEAGIKSATFLVKGENAFGYLKSEKGVHRLVRISPFDAAARRHTSFAAVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ + ++ I +D+ + + G+ + A + H PTGI VQ +R+
Sbjct: 184 PE-IDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHKPTGIVVQCQTQRSQMQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +AL L+AKL + E+ I W + R YV HPY LV+D +T ++
Sbjct: 243 NREQALRLLRAKLFELELEKQAELKEQIGGTYQAIEWGSQIRSYVFHPYNLVKDHRTSVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DGN+ PFIE +
Sbjct: 303 TGNVQAVMDGNLDPFIEGFL 322
>gi|340793648|ref|YP_004759111.1| peptide chain release factor RF-2 [Corynebacterium variabile DSM
44702]
gi|340533558|gb|AEK36038.1| peptide chain release factor RF-2 [Corynebacterium variabile DSM
44702]
Length = 377
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 168/328 (51%), Gaps = 12/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + ++ LR + ++ ++ ++A+ A++ +
Sbjct: 43 SLWDDPDHAQQVTSQLSHVQSRLKKVRGLRSRLDDLPVMYEMADEAAVEDAAEGAEAKEL 102
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E++ +L G D A V I++ + G+ WAE L+ MY RWA+K
Sbjct: 103 ADAELADLRADIESLEVTTMLSGEYDDREAVVNIRSAAGGVDAADWAEMLMRMYTRWAEK 162
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSAT +Y +G LS E G H L+ + + + A
Sbjct: 163 NGHKVEVYDISYAEEAGIKSATFVVHGDYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 222
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ETS + I + D+ ++ S G+ + A + HIPTGI V E
Sbjct: 223 EVEVLPV-VETSDHVDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 281
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK A+ L AKLL ++ + + ++ + N W + R YV HPY++V+D+
Sbjct: 282 KSQIQNKASAMRVLAAKLLERKRQEEAAEMDALRGDG-SNSWGNQMRSYVLHPYQMVKDL 340
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T ++ D + VLDG I +EA I R
Sbjct: 341 RTNYEVNDPSKVLDGGIDGLLEAGIRWR 368
>gi|86739504|ref|YP_479904.1| peptide chain release factor 2 [Frankia sp. CcI3]
gi|123751448|sp|Q2JEW7.1|RF2_FRASC RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|86566366|gb|ABD10175.1| bacterial peptide chain release factor 2 (bRF-2) [Frankia sp. CcI3]
Length = 366
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 161/342 (47%), Gaps = 45/342 (13%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
+LW D ++ V +L+ + + ++ LR + ++ A L D L A
Sbjct: 43 DLWSDQDRAQAVTRRLSSTRGDIARVEGLRRRLDDIAAAADLG-----DEDLLAEAAADL 97
Query: 63 -RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R S D++ L E+ LL G D A V + AG+ G+ W LL MY+RWA++
Sbjct: 98 PRLSSDIAGL----EVRTLLSGEYDERDAIVQLSAGAGGVDAADWTAMLLRMYLRWAERH 153
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + + YA+G L E G H L+ + + + A
Sbjct: 154 GYATEVFDTSEAEEAGLKSATFQVKAPYAYGTLRSEHGVHRLVRISPFDNQNRRQTSFAG 213
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V P+ +E S + I D+DL +F S G+ + A I H+PTGI V ER
Sbjct: 214 VEVTPV-VELSDHVDIDDKDLRIDIFRSSGPGGQGVNTTDSAVRITHLPTGIVVTCQNER 272
Query: 237 NHFANKMKALNRLKAKLL-------------VIVGEQGVSNVSCIKREAIVNIWQRETRR 283
+ NK A+ L+AKLL + G Q VS S I R
Sbjct: 273 SQLQNKAAAMIVLQAKLLERRRAEEAAEKQRITGGPQDVSFGSQI-------------RN 319
Query: 284 YVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
YV HPY++V+D++T + + + VLDG + FI+A I RRS
Sbjct: 320 YVLHPYQMVKDLRTDTETSNTSGVLDGELDDFIDAEIRWRRS 361
>gi|326771885|ref|ZP_08231170.1| peptide chain release factor 2 [Actinomyces viscosus C505]
gi|326638018|gb|EGE38919.1| peptide chain release factor 2 [Actinomyces viscosus C505]
Length = 373
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 175/334 (52%), Gaps = 17/334 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V L+ + + ++ L + E+ + + +LA E + A A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGEDAAEILA-EAE 101
Query: 66 LD---VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+D +SK L E+ LL G D A +TI++G+ G+ +AE LL MY RWA++
Sbjct: 102 MDLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADFAEMLLRMYTRWAERHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V++ + G+KS T E YA+G LS E G H L+ + + + A V
Sbjct: 162 YPVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V E++
Sbjct: 222 EVIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSMQDEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D
Sbjct: 281 QIQNRAAAMRVLQSRLLLLKQQEE----DAKKKELAGDVKASWGDQMRSYVLNPYQMVKD 336
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++T ++ + +SV DG+I FI+A I R+ +T
Sbjct: 337 LRTNFEVGNPDSVFDGDIDGFIDAGIRWRKQQET 370
>gi|238916331|ref|YP_002929848.1| peptide chain release factor RF-2 [Eubacterium eligens ATCC 27750]
gi|238871691|gb|ACR71401.1| peptide chain release factor RF-2 [Eubacterium eligens ATCC 27750]
Length = 372
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 153/318 (48%), Gaps = 5/318 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P KS + +L +L ++ K + ++AE E+ D L
Sbjct: 46 FWDNPDKSQNAMKELKGLKDAFERYNELETGLDDVKTLIEMAE-ESNDQSLIPEIEEEIT 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++ + LL G +D A +T+ AG+ G W + L MY RWA+ GY
Sbjct: 105 NLEDKMESLRIETLLSGEHDACDAILTLHAGAGGTESCDWCQMLFRMYTRWAESHGYTTE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KS TIE E A+G+L E G H L+ N + + + DV+P
Sbjct: 165 TLDYLEGEEAGIKSVTIEIRGENAYGHLKSEHGVHRLVRISPFNAAGKRQTSFVSCDVMP 224
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQ--HIPTGIAVQSLGERNHFANK 242
+ D+ + + S Q I K ++ I+ H+PTGI VQ ER+ NK
Sbjct: 225 DINQDIDIEINDDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQHQNK 284
Query: 243 MKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLP 302
KA+ LKAKL ++ + N+S I+ + + + R YV PY +V+D +T ++
Sbjct: 285 DKAMQMLKAKLYLLKEAENAENLSGIRGDVKDINFGSQIRSYVLQPYTMVKDNRTNKEVA 344
Query: 303 DFNSVLDGNIKPFIEAHI 320
+ SVLDGNI PFI A++
Sbjct: 345 NAGSVLDGNIDPFINAYL 362
>gi|399047321|ref|ZP_10739380.1| peptide chain release factor 2 [Brevibacillus sp. CF112]
gi|433543813|ref|ZP_20500211.1| peptide chain release factor 2 [Brevibacillus agri BAB-2500]
gi|398054758|gb|EJL46868.1| peptide chain release factor 2 [Brevibacillus sp. CF112]
gi|432184900|gb|ELK42403.1| peptide chain release factor 2 [Brevibacillus agri BAB-2500]
Length = 328
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 161/324 (49%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L +V + L + E+ +L+ +L +E D L + Y ++
Sbjct: 5 DFWDDNEAAQKTISELNAIKSLVETMSKLDSQYEDLQLMLELV-IEEGDSSLIQDLYDST 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K +++E+ LL D A + + G+ G + WA LL MY RW D +G++
Sbjct: 64 QELKKSFERFELELLLSDQYDKNNAILELHPGAGGTESQDWASMLLRMYTRWGDAKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D GVKS T+ + A+GYL E G H L+ F H + ++C +V
Sbjct: 124 ETLDYLPGDEAGVKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDASGRRHTSFVSC-NV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P +E + I EDL + S G+ + A I H+PTGI V ER+
Sbjct: 183 LPE-IEDDNAVDIRTEDLKIDTYRSSGAGGQHINTTDSAVRITHLPTGIVVTCQTERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L A+L E+ ++ I+ E W + R YV HPY LV+D +T +
Sbjct: 242 KNRERAMKMLTARLFEKKREEQEKTLAAIQGEQKDIAWGSQIRSYVFHPYSLVKDHRTNM 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I FI+A++ ++
Sbjct: 302 EVGNVQAVMDGEIDVFIDAYLRAQ 325
>gi|358068069|ref|ZP_09154539.1| peptide chain release factor 2 [Johnsonella ignava ATCC 51276]
gi|356693613|gb|EHI55284.1| peptide chain release factor 2 [Johnsonella ignava ATCC 51276]
Length = 339
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 155/319 (48%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++ S + L +L + + K+L EE +++ +L E D +
Sbjct: 6 FWENSESSTKTLRELKNLKAGIEEYKNLENLYEEIEVLIELG-YEEEDRTVLGEIENLIN 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ + LD+ + LL GP D A + + AG G W L MY RWA + Y
Sbjct: 65 ELGEKLDEVKTKTLLSGPYDSCSAIIKLNAGVGGTEACDWCSILYRMYTRWAQSKSYSIE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KS T++ E A+GYL GE G H L+ N + + + DV+P
Sbjct: 125 VLDFLDGEEAGIKSVTVQVNGENAYGYLKGEHGIHRLVRISPFNAAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+E D+ ++ +D+ F + G+ + A + HIPTG+ VQ ER+ N
Sbjct: 185 -DIEEDIDIDLNPDDIKIDTFRASGAGGQHVNKTSSAVRMTHIPTGVVVQCQNERSQLRN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K KAL LKAKLL+I + V +S I+ + W + R YV PY +V+D +T +
Sbjct: 244 KEKALQILKAKLLIIKQQANVEKLSDIRGDVKEIGWSSQIRSYVMQPYTMVKDHRTACES 303
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ ++VLDG I FI A++
Sbjct: 304 SNVSAVLDGGIDDFISAYL 322
>gi|386086741|ref|YP_006002615.1| Bacterial peptide chain release factor 2 (BRF-2) [Streptococcus
thermophilus ND03]
gi|312278454|gb|ADQ63111.1| Bacterial peptide chain release factor 2 (BRF-2) [Streptococcus
thermophilus ND03]
Length = 326
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 166/327 (50%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +K+L ++E +L ++ E D + +
Sbjct: 5 DFWNDNIAAQKTSQELNELKIKYETFNNMKEL---SDETELYLEMLEE---DDSVQEELE 58
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WAE LL MY R+ + +G
Sbjct: 59 ETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWAEMLLRMYQRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 119 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 178 VEVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG + + V+DG+I+ FI+A++ R
Sbjct: 297 TGYGVAQVDKVIDGDIEGFIDAYLKWR 323
>gi|392331070|ref|ZP_10275685.1| peptide chain release factor 2 [Streptococcus canis FSL Z3-227]
gi|391418749|gb|EIQ81561.1| peptide chain release factor 2 [Streptococcus canis FSL Z3-227]
Length = 327
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + +L + +++ ++E +L ++ E + K AS
Sbjct: 5 DFWNDNMAAQKTSQELNNLKSTYETFHNMQELSDETELYLEMLEED----DSVKDDLEAS 60
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 61 LEKLGQILTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 120
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ FE A+G+L E G H L+ F + H + V+
Sbjct: 121 VETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFVSVE 179
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 180 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQ 238
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + E+ + V+ +K + W + R YV PY +V+D +T
Sbjct: 239 YGNRDRAMKMLQAKLYQLEQEKKAAEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 298
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I+ FI+A++ R S D
Sbjct: 299 YEVAQVDKVMDGDIEGFIDAYLKWRMSDD 327
>gi|322376937|ref|ZP_08051430.1| peptide chain release factor 2 [Streptococcus sp. M334]
gi|417924151|ref|ZP_12567603.1| peptide chain release factor 2 [Streptococcus mitis SK569]
gi|418967528|ref|ZP_13519191.1| peptide chain release factor 2 [Streptococcus mitis SK616]
gi|419766390|ref|ZP_14292594.1| peptide chain release factor 2 [Streptococcus mitis SK579]
gi|321282744|gb|EFX59751.1| peptide chain release factor 2 [Streptococcus sp. M334]
gi|342836205|gb|EGU70421.1| peptide chain release factor 2 [Streptococcus mitis SK569]
gi|383344141|gb|EID22311.1| peptide chain release factor 2 [Streptococcus mitis SK616]
gi|383354126|gb|EID31702.1| peptide chain release factor 2 [Streptococcus mitis SK579]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 170/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L +
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELVTQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|170759975|ref|YP_001785502.1| peptide chain release factor 2 [Clostridium botulinum A3 str. Loch
Maree]
gi|169406964|gb|ACA55375.1| peptide chain release factor 2 [Clostridium botulinum A3 str. Loch
Maree]
Length = 327
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W++ ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNNIKEAQKITSEEKYLKDKLIKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFSIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++V+P L +++I EDL + + G+ + + A I HIPTGI VQ
Sbjct: 175 SFASIEVLPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYL 321
>gi|414158170|ref|ZP_11414464.1| peptide chain release factor 2 [Streptococcus sp. F0441]
gi|410870715|gb|EKS18672.1| peptide chain release factor 2 [Streptococcus sp. F0441]
Length = 325
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 ---TELDKMMTNYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVSQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|401684570|ref|ZP_10816446.1| peptide chain release factor 2 [Streptococcus sp. BS35b]
gi|400184840|gb|EJO19076.1| peptide chain release factor 2 [Streptococcus sp. BS35b]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 ---TELDKMMTNYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQERKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVSQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|315612838|ref|ZP_07887749.1| peptide chain release factor RF2 [Streptococcus sanguinis ATCC
49296]
gi|417916375|ref|ZP_12559957.1| peptide chain release factor 2 [Streptococcus mitis bv. 2 str.
SK95]
gi|417935343|ref|ZP_12578662.1| peptide chain release factor 2 [Streptococcus mitis bv. 2 str.
F0392]
gi|418975231|ref|ZP_13523140.1| peptide chain release factor 2 [Streptococcus oralis SK1074]
gi|419779656|ref|ZP_14305526.1| peptide chain release factor 2 [Streptococcus oralis SK10]
gi|419781250|ref|ZP_14307082.1| peptide chain release factor 2 [Streptococcus oralis SK100]
gi|419783212|ref|ZP_14309003.1| peptide chain release factor 2 [Streptococcus oralis SK610]
gi|315314948|gb|EFU62989.1| peptide chain release factor RF2 [Streptococcus sanguinis ATCC
49296]
gi|340769836|gb|EGR92354.1| peptide chain release factor 2 [Streptococcus mitis bv. 2 str.
F0392]
gi|342829817|gb|EGU64159.1| peptide chain release factor 2 [Streptococcus mitis bv. 2 str.
SK95]
gi|383182366|gb|EIC74921.1| peptide chain release factor 2 [Streptococcus oralis SK610]
gi|383184642|gb|EIC77156.1| peptide chain release factor 2 [Streptococcus oralis SK100]
gi|383186044|gb|EIC78520.1| peptide chain release factor 2 [Streptococcus oralis SK10]
gi|383348602|gb|EID26561.1| peptide chain release factor 2 [Streptococcus oralis SK1074]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|90962160|ref|YP_536076.1| peptide chain release factor 2 [Lactobacillus salivarius UCC118]
gi|301301257|ref|ZP_07207412.1| peptide chain release factor 2 [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|90821354|gb|ABD99993.1| Bacterial Peptide Chain Release Factor 2 [Lactobacillus salivarius
UCC118]
gi|300851133|gb|EFK78862.1| peptide chain release factor 2 [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 355
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 22/327 (6%)
Query: 7 LWDDPTKSNEVLV-------KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
WDD K+ EV+ K ++ ++ DL E L+ ++ + E + L +
Sbjct: 28 FWDDQEKAQEVIAENNDLKAKFETFHELAESISDLGVSLE---LLQEIPDDEELQADLEE 84
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
A KLL Y+++ LL D A + I G+ G + W LL MY RWA
Sbjct: 85 NYQHAE----KLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTESQDWGSMLLRMYTRWAS 140
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
+ ++ VD + G+KS T+ E + A+GYL E G H L+ F + H +
Sbjct: 141 QHDFKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHRLVRISPFDSAGRRH-TS 199
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V+V+P L+ S ++++ ED+ +F + G+ + A + HIPTGI V S
Sbjct: 200 FASVNVMPE-LDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGIVVSSQ 258
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
+R+ F N+ A N L+AKL + E+ + I+ E + W + R YV HPY +V+
Sbjct: 259 AQRSQFQNRATAENMLRAKLYQLEMEEKEKQRAAIQGEQLDIGWGSQIRSYVFHPYSMVK 318
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHI 320
D +T + + +V+DG++ PFI A++
Sbjct: 319 DHRTDYETGNIQAVMDGDLDPFINAYL 345
>gi|417793933|ref|ZP_12441199.1| peptide chain release factor 2 [Streptococcus oralis SK255]
gi|334271653|gb|EGL90038.1| peptide chain release factor 2 [Streptococcus oralis SK255]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVSQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|331266735|ref|YP_004326365.1| peptide chain release factor 2 [Streptococcus oralis Uo5]
gi|326683407|emb|CBZ01025.1| peptide chain release factor 2 [Streptococcus oralis Uo5]
Length = 325
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|418968754|ref|ZP_13520157.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383352544|gb|EID30236.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae ATCC
BAA-960]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 171/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -AELD--KMMTSYEMTLLLSELYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|419814432|ref|ZP_14339220.1| peptide chain release factor 2 [Streptococcus sp. GMD2S]
gi|419817362|ref|ZP_14341526.1| peptide chain release factor 2 [Streptococcus sp. GMD4S]
gi|404466086|gb|EKA11445.1| peptide chain release factor 2 [Streptococcus sp. GMD4S]
gi|404471827|gb|EKA16298.1| peptide chain release factor 2 [Streptococcus sp. GMD2S]
Length = 325
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQTGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|385263221|ref|ZP_10041313.1| peptide chain release factor 2 [Streptococcus sp. SK643]
gi|385188535|gb|EIF36020.1| peptide chain release factor 2 [Streptococcus sp. SK643]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 168/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ L E E+++ L +
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLVEDESVEEELVNQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + G
Sbjct: 66 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNANG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ ++D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEILDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + ++ I ++D+ F S G+ + + HIPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVDIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|338707960|ref|YP_004662161.1| peptide chain release factor 2 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294764|gb|AEI37871.1| peptide chain release factor 2 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 375
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 171/339 (50%), Gaps = 21/339 (6%)
Query: 2 VRNYNLWDDPTKSNEVLV---KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
V + +LWDD + EV+ +L +S+ A++ R E LI E D +
Sbjct: 39 VEDPHLWDDARAAQEVMRERGRLDESIAATRAIE--RELQENIDLIEMAEAEEEED--MV 94
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K A A +++ ++ ++ LL G D + + AG+ G + WAE L MY RWA
Sbjct: 95 KDAIAALAHLAERANRDKVKALLSGEADSNDTYIEVNAGAGGTESQDWAEMLSRMYQRWA 154
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++EG+R +VD + G+KSAT+ + E A+GY E G H L+ F + + H
Sbjct: 155 EREGFRVELVDYHAGEQAGIKSATLLIKGESAYGYAKTENGVHRLVRISPFDSNARRH-T 213
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V V P+ ++ D+++ D+DL + S G+ + A I H+PTGI V
Sbjct: 214 SFASVAVYPV-VDDDIDIEVLDKDLKIDTYRSSGAGGQHVNTTDSAVRITHMPTGIVVAC 272
Query: 233 LGERNHFANKMKALNRLKAKLL---VIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
+R+ N+ +A+ +LKA+L + + E S K E W + R YV PY
Sbjct: 273 QNQRSQHKNRAEAMKQLKARLYERELQIREAEASAGYAAKSEI---GWGHQIRSYVLQPY 329
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+LV+D++TGI + VLDGN++ FI A + R + +T
Sbjct: 330 QLVKDLRTGITSTAPSDVLDGNLEDFIAAALAQRITGET 368
>gi|332288942|ref|YP_004419794.1| peptide chain release factor 2 [Gallibacterium anatis UMN179]
gi|330431838|gb|AEC16897.1| peptide chain release factor 2 [Gallibacterium anatis UMN179]
Length = 351
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 175/325 (53%), Gaps = 14/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W+DP K+ + L K SL+ VVN +K L+ ++ + +LA +EA D F A A
Sbjct: 31 DVWNDPEKA-QALGKERSSLEAVVNTIKSLQQGLDDVDGLLELA-IEADDQATFDEAV-A 87
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L + E ++ G ND V ++AGS G + W E LL MY+RWA+ +G+
Sbjct: 88 ELDQLEQSLAKLEFRRMFSGANDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGF 147
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +++ G+KSATI EYAFG+L ETG H L+ F + + H + + V
Sbjct: 148 KAELMEVSDGDVAGIKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFSAV 206
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V P + D++I+ DL ++ + G+ + + A I H+PTGI VQ +R+
Sbjct: 207 FVYPE-INDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHMPTGIVVQCQNDRS 265
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK +A+ +LKAKL + ++ + ++ W + R YV + ++D++T
Sbjct: 266 QHKNKDQAMKQLKAKLYELELKKKNAEKQALEESKSDIGWGSQIRSYVLDDAR-IKDLRT 324
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINS 322
G++ + +VLDG++ FIEA + +
Sbjct: 325 GVENRNTQAVLDGDLDRFIEASLKA 349
>gi|340359594|ref|ZP_08682074.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 448
str. F0400]
gi|339884348|gb|EGQ74144.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 448
str. F0400]
Length = 373
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 174/332 (52%), Gaps = 15/332 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V L+ + + ++D+ + ++ + + ++A E+ + A A
Sbjct: 43 DLWDDPDAAQAVTSALSHAQADLKRVEDMGGRIDDLEAMVEMAGEESGEDAEELLAEAAL 102
Query: 66 LDVS--KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
VS + L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLVSICEDLGDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E++ + + + D+ +F S G+ + A I HIPTG+ V E++
Sbjct: 223 VIPL-IESTDHIDVPETDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGLVVSMQDEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D+
Sbjct: 282 IQNRAAAMRVLQSRLLLLKQQE----EDAKKKELAGDVKASWGDQMRSYVLNPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+TG ++ + +SV DG I FI+A I R+ +
Sbjct: 338 RTGYEVGNPDSVFDGGIDGFIDAGIRWRKQQE 369
>gi|333904674|ref|YP_004478545.1| peptide chain release factor 2 [Streptococcus parauberis KCTC
11537]
gi|333119939|gb|AEF24873.1| peptide chain release factor 2 [Streptococcus parauberis KCTC
11537]
gi|456370558|gb|EMF49454.1| Peptide chain release factor 2 [Streptococcus parauberis KRS-02109]
gi|457095857|gb|EMG26328.1| Peptide chain release factor 2 [Streptococcus parauberis KRS-02083]
Length = 327
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 167/330 (50%), Gaps = 15/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D + + +L + LKV + D++ +EE +L ++ + + + A
Sbjct: 5 DFWNDNIAAQKTSQEL-NELKVKFDTYHDMQNLSEETELYLEMLDED----DSLQEELEA 59
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
SL+ + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G+
Sbjct: 60 SLEKLDQILSSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGF 119
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T+ FE A+G+L E G H L+ F + H + V
Sbjct: 120 KVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTSV 178
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 179 EVMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRT 237
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +T
Sbjct: 238 QYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRT 297
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I FI+A++ R + D
Sbjct: 298 SFEVAQVDKVMDGDIDGFIDAYLKWRMNDD 327
>gi|289168241|ref|YP_003446510.1| peptide chain release factor 2 [Streptococcus mitis B6]
gi|288907808|emb|CBJ22648.1| peptide chain release factor 2 [Streptococcus mitis B6]
Length = 325
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 170/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L +
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHEELVTQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -SELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|406964051|gb|EKD89981.1| hypothetical protein ACD_32C00109G0023 [uncultured bacterium]
Length = 358
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 165/325 (50%), Gaps = 14/325 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++P +S + +L+D K + L +L + + + I++ M+ K R
Sbjct: 43 FWNNPQESQVLSRQLSDKQKTLQTLDELESRIQNSLEISEEPSMQED----LKTEIR--- 95
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LD+ E+ L P+D A ++I +G+ G+ WA L MY R+ +K ++
Sbjct: 96 EIEKALDKLELKLFLSNPHDESEAIISIHSGTGGVEAMDWAAMLTRMYQRYLEKAEWKYE 155
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D+ + G+K+ ++ +AFGYL GE G H L+ N + + A V+V+P
Sbjct: 156 ITDEDPGEEAGIKTVSMIVHEAFAFGYLKGEAGTHRLVRQSPFNADKLRQTSFALVEVLP 215
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +++I++ D+ F S G+ + A ++HIPTGI V + ER+ N
Sbjct: 216 VI--NPSEVEINESDIEFDAFRSGGAGGQNVNKVSTAVRLKHIPTGITVTAQTERSQLQN 273
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ L AKL + QG +K E W + R YV HPY +V+D++T ++
Sbjct: 274 RENAMKLLLAKLWALTQAQGKKEQEKLKGEIRQASWGTQIRSYVLHPYHMVKDLRTEVET 333
Query: 302 PDFNSVLDGNIKPFIEAHINSRRSS 326
D ++VLDG++ PFIEA + SS
Sbjct: 334 SDTDAVLDGDLTPFIEAELKLSTSS 358
>gi|385834799|ref|YP_005872573.1| peptide chain release factor 2 [Lactobacillus rhamnosus ATCC 8530]
gi|355394290|gb|AER63720.1| peptide chain release factor 2 [Lactobacillus rhamnosus ATCC 8530]
Length = 332
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 134/260 (51%), Gaps = 8/260 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LDQYEM LL GP D A + I G+ G + W L+ MY RWAD+ G++
Sbjct: 65 DLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQNGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V D G+KS T+ E A+G L E GAH L+ F + H + A VDV+
Sbjct: 125 VADYQPGDEAGIKSVTLLINGENAYGLLKSEKGAHRLVRISPFDSAGRRH-TSFASVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ S ++ I ED+ +F S G+ + A + H+PTGI S +R+ F
Sbjct: 184 PE-LDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQAQRSQFQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ LKAKL E + I+ E + + R YV HPY +V+D +T +
Sbjct: 243 NKATAMAMLKAKLYQREEEAKKAKAKAIQGEQKDVAFGSQIRSYVFHPYTMVKDHRTNYE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DG++ PFI A++
Sbjct: 303 TGNGQAVMDGDLNPFINAYL 322
>gi|357237810|ref|ZP_09125150.1| peptide chain release factor 2 [Streptococcus ictaluri 707-05]
gi|356753559|gb|EHI70669.1| peptide chain release factor 2 [Streptococcus ictaluri 707-05]
Length = 327
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 169/332 (50%), Gaps = 19/332 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + + +++L ++E +L ++ E + K
Sbjct: 5 DFWNDNIAAQKTSQELNELKLKYETFHNMQEL---SDETELYLEMLEED----DSVKEEL 57
Query: 63 RASL-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
ASL + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +
Sbjct: 58 EASLTKLGQILASYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAK 117
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
G++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 118 GFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFV 176
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +
Sbjct: 177 SVEVMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVD 235
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R + N+ +A+ L+AKL + E+ + VS +K + W + R YV PY +V+D
Sbjct: 236 RTQYGNRDRAMKMLQAKLYQLEQEKKAAEVSALKGDKKEITWGSQIRSYVFTPYTMVKDH 295
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T ++ + V+DG+I+ FI+A++ R S D
Sbjct: 296 RTNFEVAQVDKVMDGDIEGFIDAYLKWRMSDD 327
>gi|332297634|ref|YP_004439556.1| Peptide chain release factor 2 [Treponema brennaborense DSM 12168]
gi|332180737|gb|AEE16425.1| Peptide chain release factor 2 [Treponema brennaborense DSM 12168]
Length = 378
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 160/324 (49%), Gaps = 10/324 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W++P K+ +V+ + + +DL ++A+ + +L ME+ D L A
Sbjct: 43 GFWENPAKAEKVMTDIKQLKNRIEPWRDLIAAVDDAEALYELG-MESGDESLEAELKAAY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + LL G D GA +TI AG+ G WA+ L MYVRWA++ G++
Sbjct: 102 DQAQAEYDRLSILNLLSGEVDRNGAFLTIHAGAGGTEACDWAQMLCRMYVRWAERRGFKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD + GG+KS T++ EYA+GYL E G H L+ F + + H + + V V
Sbjct: 162 ETVDMLEAE-GGIKSVTLQISGEYAYGYLKSEAGIHRLVRISPFDSNARRH-TSFSSVYV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P+ L+ + ++ I EDL + + G+ + A H+PTGI V ER+
Sbjct: 220 FPV-LDDTIEVDIRPEDLRVDTYRAGGAGGQHVNKTDSAVRFTHLPTGIVVACQTERSQT 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A++ L+A+L EQ + E W + R YV PY +V+D +T
Sbjct: 279 MNRATAMSMLRARLYEYYREQKEKENAKFASEKKDISWGNQIRSYVFQPYTMVKDHRTKH 338
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + SV+DG I PFIEA + ++
Sbjct: 339 EIGNIQSVMDGAIDPFIEAFLAAQ 362
>gi|238019424|ref|ZP_04599850.1| hypothetical protein VEIDISOL_01293 [Veillonella dispar ATCC 17748]
gi|237864123|gb|EEP65413.1| hypothetical protein VEIDISOL_01293 [Veillonella dispar ATCC 17748]
Length = 330
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 156/320 (48%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDDP K+ E+ + V + K L E+A ++ ++A +E D L
Sbjct: 5 TFWDDPDKAREISQEATQLKNAVESYKQLVSDIEDANVMLEMA-IEEDDRSLEGEIKDYV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++ E+ LL G D A +T AG+ G + W L+ MY+RWA+K G+
Sbjct: 64 QQIEETVEKQEVLLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWAEKAGFSI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D+ G KSAT + E AFGYL E G H L+ + + + A VDV+
Sbjct: 124 ELMDEQPGDEAGTKSATFLIKGENAFGYLKSEKGVHRLVRISPFDAAARRHTSFAAVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ + ++ I +D+ + + G+ + A + H PTGI VQ +R+
Sbjct: 184 PE-IDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHRPTGIVVQCQTQRSQMQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +AL L+AKL + E+ I W + R YV HPY LV+D +TG++
Sbjct: 243 NREQALRLLRAKLFELELEKQAELKEQIGGTYQAIEWGSQIRSYVFHPYNLVKDHRTGVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ SV+DGN+ F+E +
Sbjct: 303 TGNVQSVMDGNLDQFMEGFL 322
>gi|282848898|ref|ZP_06258288.1| peptide chain release factor 2 [Veillonella parvula ATCC 17745]
gi|282581403|gb|EFB86796.1| peptide chain release factor 2 [Veillonella parvula ATCC 17745]
Length = 330
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P K+ E+ + V + K L E+A ++ ++A ++ D +
Sbjct: 5 TFWDNPDKAREISQEATQLKNAVESYKQLVSDIEDANMMLEMA-IDEDDLSMESEIKEYV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L++ E+ LL G D A +T AG+ G + W L+ MY+RWA+K G+
Sbjct: 64 KQIEETLEKQEVLLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWAEKSGFSI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D+ G+KSAT + E AFGYL E G H L+ + + + A VDV+
Sbjct: 124 ELMDEQPGDEAGIKSATFLVKGENAFGYLKSEKGVHRLVRISPFDAAARRHTSFAAVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ + ++ I +D+ + + G+ + A + H PTGI VQ +R+
Sbjct: 184 PE-IDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHKPTGIVVQCQTQRSQMQ 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +AL L+AKL + E+ I W + R YV HPY LV+D +T ++
Sbjct: 243 NREQALRLLRAKLFELELEKQAELKEQIGGTYQAIEWGSQIRSYVFHPYNLVKDHRTSVE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DGN+ PF+E +
Sbjct: 303 TGNVQAVMDGNLDPFVEGFL 322
>gi|374320752|ref|YP_005073881.1| peptide chain release factor 2 [Paenibacillus terrae HPL-003]
gi|357199761|gb|AET57658.1| peptide chain release factor 2 [Paenibacillus terrae HPL-003]
Length = 339
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 171/326 (52%), Gaps = 13/326 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDY--GLFKRAYR 63
+ WDD K+ V+ ++ V++ + LR + E+A ++A+LA+ E + G + + R
Sbjct: 13 DFWDDNDKAQAVIAEMNAVKSSVDSYEQLRQEYEDAGMMAELADEEGDETLAGEIENSIR 72
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ L SKL ++E+ LL P D A + + G+ G + W + LL MY RWA+K G+
Sbjct: 73 SLL--SKLQ-EFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRMYTRWAEKRGF 129
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T+ + A+GYL E G H L+ F + H + ++C
Sbjct: 130 KVETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC- 188
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
DVVP ++ D++I EDL + + G+ + A I H+P+GI V ER+
Sbjct: 189 DVVPEIVD-DVDVEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPSGIVVTCQNERS 247
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ +A+ L++KL E+ + I+ E W + R YV HPY +V+D +T
Sbjct: 248 QIKNREQAMTMLRSKLYERKIEEQRQQLDEIRGEQSDIAWGSQIRSYVFHPYSMVKDHRT 307
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG++ PFI+ ++ S+
Sbjct: 308 SVETGNVGAVMDGDLDPFIDGYLRSQ 333
>gi|374852036|dbj|BAL54979.1| peptide chain release factor RF-2 [uncultured Chloroflexi
bacterium]
Length = 311
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 154/308 (50%), Gaps = 10/308 (3%)
Query: 18 LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM 77
+ +LAD + V + + + +A + QL E E++ L K + + + +Q
Sbjct: 1 MRRLADLRETVETWQAFQQRLHDALELCQL-EDESLREELEKEVH----SLEEEFEQKSF 55
Query: 78 SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGG 137
+ +L GP D A + I AG+ G + WA L+ MY+RWA++ GY ++D + G
Sbjct: 56 AAMLSGPYDAGDALLAIHAGAGGTDSQDWAAMLMRMYLRWAERRGYETEILDMTEGEEAG 115
Query: 138 VKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQI 195
+KS TI +YA+GYL E G H L+ + + + A V+V+P P + I
Sbjct: 116 IKSVTIAVNGKYAYGYLRSEKGVHRLVRLSPFDAAHRRHTSFAMVEVLPQIAMDDPVVVI 175
Query: 196 SDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAK 252
+DL ++ + S G+ A I HIPTGI V ER+ NK A+ L+A+
Sbjct: 176 DPKDLKIDVYRASSAGGQNVQKNATAVRITHIPTGIVVTCENERSQTQNKETAMRILRAR 235
Query: 253 LLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNI 312
L + + ++ ++ E + W + R YV HPY++V+D +T + + +VLDG I
Sbjct: 236 LFELKRAEKEEEIALLRGEYVKAEWGNQIRSYVLHPYQMVKDHRTDYETGNTQAVLDGEI 295
Query: 313 KPFIEAHI 320
F+ A++
Sbjct: 296 DDFMIAYL 303
>gi|258507895|ref|YP_003170646.1| peptide chain release factor 2 [Lactobacillus rhamnosus GG]
gi|385827576|ref|YP_005865348.1| protein chain release factor B [Lactobacillus rhamnosus GG]
gi|257147822|emb|CAR86795.1| Peptide chain release factor 2 [Lactobacillus rhamnosus GG]
gi|259649221|dbj|BAI41383.1| protein chain release factor B [Lactobacillus rhamnosus GG]
Length = 332
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 158/331 (47%), Gaps = 31/331 (9%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL--------- 57
WDD + KV++A L+ K + + A E+E ++ GL
Sbjct: 6 FWDDSEAAQ----------KVIDANNKLKEKHD--RFYALENELEDLEAGLELLQDEPDP 53
Query: 58 -FKRAYRASL-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+R L D+ + LDQYEM LL GP D A + I G+ G + W L+ MY
Sbjct: 54 DLQREEETKLKDLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQ 113
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFP 172
RWAD+ G++ V D G+KS T+ E A+G L E G H L+ F +
Sbjct: 114 RWADQNGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRR 173
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
H + A VDV+P L+ S ++ I ED+ +F S G+ + A + H+PTGI
Sbjct: 174 H-TSFASVDVMPE-LDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIV 231
Query: 230 VQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPY 289
S +R+ F NK A+ LKAKL E + I+ E + + R YV HPY
Sbjct: 232 TSSQAQRSQFQNKATAMAMLKAKLYQREEEAKKAKAKAIQGEQKDVAFGSQIRSYVFHPY 291
Query: 290 KLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+V+D +T + + +V+DG++ PFI A++
Sbjct: 292 TMVKDHRTNYETGNGQAVMDGDLNPFINAYL 322
>gi|227499885|ref|ZP_03929978.1| peptide chain release factor RF2 [Anaerococcus tetradius ATCC
35098]
gi|227217994|gb|EEI83267.1| peptide chain release factor RF2 [Anaerococcus tetradius ATCC
35098]
Length = 333
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 164/325 (50%), Gaps = 9/325 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K+++++ L+ + +N K L + + L E+ A S
Sbjct: 9 DFWNDSDKASQIMADLSLKKEDLNEYKKLEEGIRDNVDLLDLVELSDNKEEDTVNAVEES 68
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + KL D+ ++ L G D ++I AG+ G+ WA+ L MY R+ D GY+
Sbjct: 69 LEALYKLADKMKLKTQLSGEYDKNNCYISINAGAGGLEATDWADMLFRMYKRYFDNVGYK 128
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+ D + GG+KSAT+ + YA+GYL GE G H L+ F + S H + A VD
Sbjct: 129 YELKDLNNEEAGGIKSATLHVKGPYAYGYLKGEKGVHRLVRISPFDSQSRRH-TSFASVD 187
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V P L+ + ++ I DL + + G+ + A I HIPTG+ S ER+
Sbjct: 188 VFPE-LDDNLEIDIDPSDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGVVATSQAERSQ 246
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+N L +KL+ I E+ + I+ + W + R YV PY +V+D +T
Sbjct: 247 IQNKQTAMNLLMSKLVQIKEEEQREKIEDIQGKYSQIAWGSQIRSYVFQPYTMVKDHRTN 306
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG+++ FI+A++ S+
Sbjct: 307 YEMGNVEAVMDGDLQGFIDAYLASK 331
>gi|325066934|ref|ZP_08125607.1| peptide chain release factor 2 [Actinomyces oris K20]
Length = 373
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 173/333 (51%), Gaps = 15/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++ L + E+ + + +LA E + + A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGEDAAEILAEAET 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A +TI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADFAEMLLRMYTRWAERHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V E++
Sbjct: 223 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSMQDEKSQ 281
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDV 295
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D+
Sbjct: 282 IQNRAAAMRVLQSRLLLLKQQEE----DAKKKELAGDVKASWGDQMRSYVLNPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+T ++ + +SV DG+I FI+A I R+ +T
Sbjct: 338 RTNFEVGNPDSVFDGDIDGFIDAGIRWRKQQET 370
>gi|269797862|ref|YP_003311762.1| peptide chain release factor 2 [Veillonella parvula DSM 2008]
gi|269094491|gb|ACZ24482.1| bacterial peptide chain release factor 2 (bRF- 2) [Veillonella
parvula DSM 2008]
Length = 368
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 157/320 (49%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+P K+ E+ + V + K L E+A ++ ++A ++ D +
Sbjct: 43 TFWDNPDKAREISQEATQLKNAVESYKQLVSDIEDANVMLEMA-IDEDDLSMESEIKEYV 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L++ E+ LL G D A +T AG+ G + W L+ MY+RWA+K G+
Sbjct: 102 KQIEETLEKQEVLLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWAEKSGFSI 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D+ G+KSAT + E AFGYL E G H L+ + + + A VDV+
Sbjct: 162 ELMDEQPGDEAGIKSATFLVKGENAFGYLKSEKGVHRLVRISPFDAAARRHTSFAAVDVM 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ + ++ I +D+ + + G+ + A + H PTGI VQ +R+
Sbjct: 222 PE-IDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHKPTGIVVQCQTQRSQMQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +AL L+AKL + E+ I W + R YV HPY LV+D +T ++
Sbjct: 281 NREQALRLLRAKLFELELEKQAELKEQIGGTYQAIEWGSQIRSYVFHPYNLVKDHRTSVE 340
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ +V+DGN+ PFIE +
Sbjct: 341 TGNVQAVMDGNLDPFIEGFL 360
>gi|400977221|ref|ZP_10804452.1| chain release factor 2 [Salinibacterium sp. PAMC 21357]
Length = 368
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 174/327 (53%), Gaps = 14/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ ++ L+ + + + + ++ +++ +LA E+ D +
Sbjct: 44 DLWDDTDKAQKITSDLSHRQAELAKINSISNRLDDLEIMVELANEESDDQAAADARAELA 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K L E+ LL G D A +TI+AG+ G+ +AE LL MY+R+A++ Y
Sbjct: 104 A-ITKTLGNLEVQTLLNGEFDQRPAVITIRAGAGGVDAADFAEMLLRMYLRYAEQHSYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
RV+D + G+KSAT E + +AFG LS E G H L+ N + + + A V+VV
Sbjct: 163 RVLDTSYAEEAGIKSATFEVDAPFAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +ET+ +++ + D+ +F S G+ + A I H+PTGI V E++
Sbjct: 223 PL-IETTDVVEVPENDIRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKRE---AIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LL++ EQ + K+E I W + R YV PY++V+D++T
Sbjct: 282 NRAAAMRVLQSRLLLLQREQE----AATKKEIAGVITASWGDQMRSYVLAPYQMVKDLRT 337
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRR 324
++ + ++V DG++ FI A I R+
Sbjct: 338 EFEVNNPSNVFDGDLDGFISAGIKWRK 364
>gi|417982994|ref|ZP_12623638.1| peptide chain release factor 2 [Lactobacillus casei 21/1]
gi|417995714|ref|ZP_12636002.1| peptide chain release factor 2 [Lactobacillus casei M36]
gi|418013307|ref|ZP_12652951.1| peptide chain release factor 2 [Lactobacillus casei Lpc-37]
gi|410529007|gb|EKQ03839.1| peptide chain release factor 2 [Lactobacillus casei 21/1]
gi|410536871|gb|EKQ11459.1| peptide chain release factor 2 [Lactobacillus casei M36]
gi|410555833|gb|EKQ29764.1| peptide chain release factor 2 [Lactobacillus casei Lpc-37]
Length = 368
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 134/260 (51%), Gaps = 8/260 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LD+YEM LL GP D A + I G+ G + W L+ MY RWAD+ G++
Sbjct: 101 DLQEKLDKYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQNGFKVE 160
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V D G+KS T+ E A+G L E G H L+ F + H + A VDV+
Sbjct: 161 VADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRH-TSFASVDVM 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ S ++ + ED+ +F S G+ + A + H+PTGI S +R+ F
Sbjct: 220 PE-LDNSIEVDLRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQAQRSQFQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ LKAKL E + I+ E + + R YV HPY +V+D +T +
Sbjct: 279 NKATAMAMLKAKLYQREEEAKRAKAKAIQGEQKDVAFGSQIRSYVFHPYTMVKDHRTNYE 338
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ N+V+DG++ PFI A++
Sbjct: 339 TGNGNAVMDGDLNPFINAYL 358
>gi|421487867|ref|ZP_15935265.1| peptide chain release factor 2 [Streptococcus oralis SK304]
gi|400369829|gb|EJP22826.1| peptide chain release factor 2 [Streptococcus oralis SK304]
Length = 329
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 ---TELDKMMANYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVSQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|422758592|ref|ZP_16812354.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411427|gb|EFY02335.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 327
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + KL + +++ ++E +L ++ E + K AS
Sbjct: 5 DFWNDNIAAQKTSQKLNELKSTYETFHNMQELSDETELYLEMLEED----DSVKDDLEAS 60
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 61 LETLGQILASYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 120
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ FE A+G+L E G H L+ F + H + V+
Sbjct: 121 VETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFVSVE 179
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 180 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQ 238
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + E+ + V+ +K + W + R YV PY +V+D +T
Sbjct: 239 YGNRDRAMKMLQAKLYQLEQEKKAAEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 298
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I+ FI+A++ R S +
Sbjct: 299 YEVAQVDKVMDGDIEGFIDAYLKWRMSDN 327
>gi|270292341|ref|ZP_06198552.1| peptide chain release factor 2, programmed [Streptococcus sp. M143]
gi|270278320|gb|EFA24166.1| peptide chain release factor 2, programmed [Streptococcus sp. M143]
Length = 329
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVRDELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|228942321|ref|ZP_04104860.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228975250|ref|ZP_04135808.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981888|ref|ZP_04142183.1| Peptide chain release factor 2 [Bacillus thuringiensis Bt407]
gi|410677595|ref|YP_006929966.1| peptide chain release factor 2 [Bacillus thuringiensis Bt407]
gi|423386667|ref|ZP_17363922.1| peptide chain release factor 2 [Bacillus cereus BAG1X1-2]
gi|423527006|ref|ZP_17503451.1| peptide chain release factor 2 [Bacillus cereus HuB1-1]
gi|452201675|ref|YP_007481756.1| Peptide chain release factor 2; programmed frameshift-containing
[Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|228778000|gb|EEM26272.1| Peptide chain release factor 2 [Bacillus thuringiensis Bt407]
gi|228784529|gb|EEM32550.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228817365|gb|EEM63451.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|401632088|gb|EJS49878.1| peptide chain release factor 2 [Bacillus cereus BAG1X1-2]
gi|402454169|gb|EJV85962.1| peptide chain release factor 2 [Bacillus cereus HuB1-1]
gi|409176724|gb|AFV21029.1| peptide chain release factor 2 [Bacillus thuringiensis Bt407]
gi|452107068|gb|AGG04008.1| Peptide chain release factor 2; programmed frameshift-containing
[Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 326
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 160/324 (49%), Gaps = 11/324 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + +V++ A++LK +V + + L E ++ +L + E D L +
Sbjct: 6 FWDDQ-QGAQVVINEANALKDMVGSFRQLDETFENLEVTHELLK-EEYDEDLHEELESEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++YE+ LL P D A + + G+ G + W LL MY RWA+K G++
Sbjct: 64 KGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP F ++++ EDL + + G+ + A I H PT V ER+
Sbjct: 183 VPEF-NDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LKAKL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 242 KNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNT 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I PFI+A++ SR
Sbjct: 302 EVGNVQAVMDGEIDPFIDAYLRSR 325
>gi|227513676|ref|ZP_03943725.1| peptide chain release factor 2 [Lactobacillus buchneri ATCC 11577]
gi|227524821|ref|ZP_03954870.1| peptide chain release factor 2 [Lactobacillus hilgardii ATCC 8290]
gi|227083087|gb|EEI18399.1| peptide chain release factor 2 [Lactobacillus buchneri ATCC 11577]
gi|227088036|gb|EEI23348.1| peptide chain release factor 2 [Lactobacillus hilgardii ATCC 8290]
Length = 354
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 160/327 (48%), Gaps = 9/327 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + +++ + + L + ++ K+ +L E D G+ +
Sbjct: 28 FWDDQQAAQKMIDETNQLKTKRDRFNTLTKELDDLKVTLELIS-EDPDSGMQDEFIGEAD 86
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD+Y++ LL G D A + I G+ G + W LL MY RWA+ ++
Sbjct: 87 KLKKQLDRYQLGLLLNGKYDHNNAILEIHPGAGGTEAQDWGSMLLRMYTRWAESHNFKVD 146
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+ S +I E A+GYL E G H L+ F + H + A VDV+
Sbjct: 147 VLDYQVGEVAGINSVSILISGENAYGYLRSEKGVHRLVRISPFDSAGRRH-TSFASVDVM 205
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P L+ ++IS ++L ++ + G+ + A I HIPTGI V S +R+
Sbjct: 206 PE-LDDDVSIKISPDELKVDVYRASGAGGQHVNKTSSAVRITHIPTGIVVASQAQRSQLQ 264
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ ALN LK+KL + ++ + I+ E + W + R YV HPY +V+D +T +
Sbjct: 265 NRQTALNMLKSKLYELEEQKKAEEKAKIEGEQLDIGWGSQIRSYVFHPYSMVKDHRTNYE 324
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ N V+DG++ PFI A++ + S D
Sbjct: 325 TANVNGVMDGDLDPFINAYLQWQLSKD 351
>gi|404492859|ref|YP_006716965.1| peptide chain release factor 2 [Pelobacter carbinolicus DSM 2380]
gi|404397961|gb|ABA88496.2| peptide chain release factor 2 [Pelobacter carbinolicus DSM 2380]
Length = 364
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 164/321 (51%), Gaps = 5/321 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+ ++ ++L + K+V + ++ + + E+ +L+A L E+ D +
Sbjct: 43 GFWESGDQAQDILKERTGLEKLVTSFRESQQELEDLQLLADLG-AESGDEATLEEISALL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + +D+ E +++L G +D A +I AG+ G + WA+ LL MY+R+ +K+G++
Sbjct: 102 PDLQRRVDKMEFARMLSGEHDSCDAIFSINAGAGGTEAQDWADMLLRMYMRYFEKKGFKA 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLACVDVVP 184
+ D G+K AT+ +YA+G+L E G H L+ P S T C V
Sbjct: 162 ELTDHQPGDEAGIKGATLTVSGDYAYGWLRAEIGIHRLVRISPFDSNARRHTSFCSVFVF 221
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L ++ I+++DL + S G+ + A I H+P+GI V ER+ N
Sbjct: 222 PELPDDVEVDINEKDLKVDTYRSSGAGGQHVNKTDSAIRITHVPSGIVVACQNERSQHKN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ +LKA+L + + S I E + W + R YV HPY++V+D +T +
Sbjct: 282 RATAMKQLKARLYELELRKKEEEASAIAGEKMEIGWGSQIRSYVLHPYRMVKDHRTNFES 341
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ ++VLDG++ FIEA++ S
Sbjct: 342 GNADAVLDGDLDGFIEAYLLS 362
>gi|256545449|ref|ZP_05472811.1| peptide chain release factor 2, programmed [Anaerococcus vaginalis
ATCC 51170]
gi|256398845|gb|EEU12460.1| peptide chain release factor 2, programmed [Anaerococcus vaginalis
ATCC 51170]
Length = 369
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 152/326 (46%), Gaps = 12/326 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD K+ E++ L+D + + ++ + + E D
Sbjct: 45 NFWDDSQKAQEIMADLSDKKDNFKTFTSFKEELKDQSDLLDIIEESNEDLESLNEIEEIL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K + +++ L G D A + I AG+ G+ WAE L+ MY R+ +K ++
Sbjct: 105 NSLKKEIGSFKIKTELDGEYDKNNAYLVIHAGAGGLEATDWAEMLMRMYTRFFEKRNFKF 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + GG+KSATI + +A+GYL GE G H L+ + S + A VD+
Sbjct: 165 DVTDLNNEEAGGIKSATIHVKGSFAYGYLKGEKGVHRLVRISPFDSSKRRHTSFASVDIF 224
Query: 184 P-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
P + +E P DL+I + + G+ + A I HIPTG+ S ER+
Sbjct: 225 PELNDDMSVEIDPKDLRID----TYRASGAGGQHVNKTDSAVRITHIPTGVIASSQAERS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK A+ L AKL I E+ + I+ W + R YV HPY LV+D +T
Sbjct: 281 QTQNKETAMKLLLAKLTQIKEEEHREKIEDIQGNYTQIAWGNQIRSYVFHPYTLVKDHRT 340
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + SV+DG+I FI+ ++ ++
Sbjct: 341 NFEVGNVESVMDGDIDGFIDEYLANK 366
>gi|227891182|ref|ZP_04008987.1| peptide chain release factor 2 [Lactobacillus salivarius ATCC
11741]
gi|227867056|gb|EEJ74477.1| peptide chain release factor 2 [Lactobacillus salivarius ATCC
11741]
Length = 355
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 22/327 (6%)
Query: 7 LWDDPTKSNEVLV-------KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
WDD K+ EV+ K ++ ++ DL E L+ ++ + E + L +
Sbjct: 28 FWDDQEKAQEVIAENNDLKAKFETFHELAESISDLGVSLE---LLQEIPDDEELQADLEE 84
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
A KLL Y+++ LL D A + I G+ G + W LL MY RWA
Sbjct: 85 NYQHAE----KLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTESQDWGSMLLRMYTRWAS 140
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
+ ++ VD + G+KS T+ E + A+GYL E G H L+ F + H +
Sbjct: 141 QHDFKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHRLVRISPFDSAGRRH-TS 199
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
A V+V+P L+ S ++++ ED+ +F + G+ + A + HIPTGI V S
Sbjct: 200 FASVNVMPE-LDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGIVVSSQ 258
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
+R+ F N+ A N L+AKL + E+ + I+ E + W + R YV HPY +V+
Sbjct: 259 AQRSQFQNRATAENMLRAKLYQLEVEEKEKQRAAIQGEQLDIGWGSQIRSYVFHPYSMVK 318
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHI 320
D +T + + +V+DG++ PFI A++
Sbjct: 319 DHRTDYETGNIQAVMDGDLDPFINAYL 345
>gi|375012433|ref|YP_004989421.1| peptide chain release factor 2 [Owenweeksia hongkongensis DSM
17368]
gi|359348357|gb|AEV32776.1| peptide chain release factor 2 [Owenweeksia hongkongensis DSM
17368]
Length = 368
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 164/323 (50%), Gaps = 15/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + V+ K+ V A + + EE L + E+ ++ +R Y+
Sbjct: 41 DFWNDHDAAEAVMKKIRGLKFWVEAYERAEEQREELTLAIEFHELGEMEASEVERIYKG- 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +++ E +L G D A + I AG+ G WA L+ MY+RWA++ ++
Sbjct: 100 --IMTIVEDLEFRNMLSGEEDKLSAVLQITAGAGGTESCDWASMLMRMYLRWAERNKFKV 157
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
R ++ GVK+ T+E E ++ FGYL GE G H L+ F + + H + V V
Sbjct: 158 RELNYQAGDVAGVKTVTLEIEGDFVFGYLKGENGVHRLVRISPFDSNAKRH-TSFVSVYV 216
Query: 183 VPLFLET-SPDLQISD-EDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL ET S D+ +SD E F S G+ + + ++H P+GI +++ R+
Sbjct: 217 YPLVDETISIDVNLSDIEWDTFRSGGAGGQNVNKVETGVRLKHKPSGIIIENTESRSQLQ 276
Query: 241 NKMKALNRLKAKLLVIVGE---QGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK KA+ LK++L I E Q + + K++ W + R YV HPYKLV+DV+T
Sbjct: 277 NKDKAIQLLKSQLYEIEMEAKNQARAEIEAGKKKI---EWGSQIRNYVLHPYKLVKDVRT 333
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
G + ++VLDG+I FI+A++
Sbjct: 334 GTETSATDAVLDGDIDAFIKAYL 356
>gi|383787632|ref|YP_005472201.1| peptide chain release factor 2 [Fervidobacterium pennivorans DSM
9078]
gi|383110479|gb|AFG36082.1| peptide chain release factor 2 [Fervidobacterium pennivorans DSM
9078]
Length = 369
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 166/323 (51%), Gaps = 15/323 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ +V ++ + K++ ++ ++ E+ ++ +L+E D + +
Sbjct: 44 DFWNDQKRAQQVNREIQRTRKIIEDMERIKVLFEDIEVGIELSEE---DPSMQEHLEEMI 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V+K + ++E+ +L G D A ++I G+ G + WA LL MY+RWA+++GY
Sbjct: 101 EEVAKKIREFELEMILNGKFDASNAYLSIHPGAGGTESQDWASMLLRMYMRWAERKGYDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD + G+KSATI + ++A+GYL E G H L+ + + + A V+V+
Sbjct: 161 EIVDYQEGEEAGIKSATIYIKGDFAYGYLKYERGVHRLVRISPFDANKRRHTSFASVNVL 220
Query: 184 PLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
P + DL+I + + G+ + + A I H+PTGI V ER+
Sbjct: 221 PEIEDDIDIEIKPEDLRID----TYRASGAGGQYVNKTESAVRITHLPTGIVVTCQTERS 276
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ A+ LKA+L + E+ + I+ E W + R YV HPY +V+D +T
Sbjct: 277 QLQNRETAMKMLKARLYQLELEKRRKQIEQIQGELKDISWGNQIRSYVFHPYTMVKDHRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHI 320
++ + +V+DG+I FIEA +
Sbjct: 337 DVETGNIEAVMDGDIDMFIEAEL 359
>gi|322516704|ref|ZP_08069613.1| peptide chain release factor RF2 [Streptococcus vestibularis ATCC
49124]
gi|322124737|gb|EFX96175.1| peptide chain release factor RF2 [Streptococcus vestibularis ATCC
49124]
Length = 337
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +++L ++E +L ++ E D + +
Sbjct: 16 DFWNDNIAAQKTSQDLNELKMKYETFNNMQEL---SDETELYLEMLEE---DDSIQEELE 69
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WA+ LL MY R+ + +G
Sbjct: 70 ETLEKLDKIMTSYEMTLLLSEPYDHSNAILEIHPGSGGTEAQDWADMLLRMYQRYGNAKG 129
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 130 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 188
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 189 VEVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 247
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 248 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 307
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I+ FI+A++ R
Sbjct: 308 TGYEVAQVDKVMDGDIEGFIDAYLKWR 334
>gi|307689287|ref|ZP_07631733.1| peptide chain release factor 2 [Clostridium cellulovorans 743B]
Length = 329
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 154/321 (47%), Gaps = 7/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ ++ V + ++ + + E+ K++ ++A +E D L Y
Sbjct: 6 FWDNLERAQSVTARAKGIKDRIDLYNNFQSSVEDIKVLIEMA-IEENDSSLVTEVYNEIS 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+S ++ + +L G D A VT+ +G G W E LL MY RW +K+ +
Sbjct: 65 TLSDSVENLRLELMLSGEYDTNNAIVTLHSGVGGTDAMDWTEMLLRMYTRWCEKKAFNVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KSAT++ YA+GYL E G H L+ N + + + A ++V P
Sbjct: 125 TLDLQVGDEAGIKSATLKVTGLYAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVTP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L +++I+ DL + + G+ + + A I HIPTGI VQ ER+ N
Sbjct: 185 -ELRQDQNVEINPSDLKVDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNERSQIQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ ALN LK+KL+ + + + + W + R YV HPY +V+D +T IQ+
Sbjct: 244 RETALNMLKSKLVELKERAHKEKIEDLTGDLKDMGWGSQIRSYVFHPYTMVKDHRTNIQV 303
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
D V+DG + FI+ +++S
Sbjct: 304 NDVYKVMDGELDVFIKGYLHS 324
>gi|296169215|ref|ZP_06850868.1| peptide chain release factor RF2 [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896113|gb|EFG75780.1| peptide chain release factor RF2 [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 368
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 172/333 (51%), Gaps = 20/333 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-----AQLAEMEAIDYGLFKR 60
LWDD + + V +L+ + + +++LR + ++ ++ + A + +
Sbjct: 43 QLWDDQSNAQRVTSQLSHAQGELRRIEELRQRLDDLPVLYELAAEEDAADALAEADAELK 102
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYLRWAEQ 156
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
Y V D + G+KSAT +A+G LS E G H L+ F N S + +
Sbjct: 157 HKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSF 215
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A V+V+P+ ++T+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 AEVEVLPV-VDTTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQN 274
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
E++ NK+ A+ L+AKLL + + + +K E + W + R YV HPY++V+D
Sbjct: 275 EKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLHPYQMVKD 333
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++T ++ + +VLDG+I F+EA I R D
Sbjct: 334 LRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 366
>gi|291442144|ref|ZP_06581534.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
gi|291345039|gb|EFE71995.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
Length = 375
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 169/326 (51%), Gaps = 15/326 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ +L+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ADVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDLLF-----SSPSL-PGERQSIAKPAACIQHIPTGIAVQSLGERN 237
P+ +E S + I + DL S PS P + + + I H+PTGI S ER+
Sbjct: 223 PV-VEQSDHVDIDESDLRVDVYRSSGPSCNPRDSDFMVR----ITHLPTGIMASSDSERS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+N LKA+LL ++ + + +K E N + R Y HPY++V+D++T
Sbjct: 278 RTRNKVTAMNVLKARLLGRRRQEEQAKMDALKDEG-GNPCGNQVRSYELHPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + SV +G I F+EA I R
Sbjct: 337 EHEVGNPESVFNGEIDGFLEAGIRWR 362
>gi|15896100|ref|NP_349449.1| peptide chain release factor 2 [Clostridium acetobutylicum ATCC
824]
gi|337738054|ref|YP_004637501.1| peptide chain release factor 2 [Clostridium acetobutylicum DSM
1731]
gi|384459565|ref|YP_005671985.1| peptide chain release factor 2 [Clostridium acetobutylicum EA 2018]
gi|15025890|gb|AAK80789.1|AE007782_3 Protein chain release factor B [Clostridium acetobutylicum ATCC
824]
gi|325510254|gb|ADZ21890.1| peptide chain release factor 2 [Clostridium acetobutylicum EA 2018]
gi|336293316|gb|AEI34450.1| peptide chain release factor 2 [Clostridium acetobutylicum DSM
1731]
Length = 329
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 137/264 (51%), Gaps = 6/264 (2%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + +D +++ +L G D A + + G G + W + LL MY RWA+ +G++
Sbjct: 65 DLHEEVDNFKIEIILSGEYDRNNAILNLHTGVGGTDAQDWTQMLLRMYTRWAEAKGFKVD 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D G+KS +I + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 125 IIDMLPGDEAGIKSVSINIDGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L S D+ I EDL + + G+ + + A I H+PTGI VQ ER+ +N
Sbjct: 185 Q-LTQSQDIVIRPEDLKVDTYRASGAGGQHVNKTESAVRITHLPTGIVVQCQSERSQHSN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+N LK+KL+ + V + E W + R YV PY +V+D +TG++
Sbjct: 244 KETAMNMLKSKLVELKERMHKEKVEDLAGELKDMGWGNQIRSYVFQPYTMVKDHRTGVET 303
Query: 302 PDFNSVLDGNIKPFIEAHINSRRS 325
+ ++V+DG I FI ++N S
Sbjct: 304 SNVDAVMDGEIDKFIIEYLNKENS 327
>gi|300022372|ref|YP_003754983.1| hypothetical protein Hden_0845 [Hyphomicrobium denitrificans ATCC
51888]
gi|299524193|gb|ADJ22662.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 377
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 161/332 (48%), Gaps = 25/332 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLW D + +V+ + + V K L+ ++A + +L E E+ D A
Sbjct: 43 NLWSDAKNAQKVMRQRQTLERSVEDFKRLQRDYDDALTLIELGEAES-DEASVSEGEAAL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V + + +L G D V + AG+ G + WA L MY RW ++ GY+
Sbjct: 102 KRVDLEAHRRSVEAMLSGEADGMSTYVEVHAGAGGTESQDWASMLARMYARWGERRGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++D+ + G+KSAT E + + AFG+L E G H L+ F + + H + A V V
Sbjct: 162 KLIDESPGEEAGIKSATFEIDGDNAFGWLKTEAGVHRLVRISPFDSNARRH-TSFASVTV 220
Query: 183 VPLFLET-SPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +T D+ +D D+ F+ S G+ + + A + H P+GI + + +R+
Sbjct: 221 YPVIDDTIEVDINPADVDISFARSSGAGGQHVNRTESAVRLVHKPSGIVIFAQEQRSQHQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---------WQRETRRYVSHPYKL 291
NK A RLKA+L + KREA N W + R YV PY+L
Sbjct: 281 NKDIAFRRLKARLY---------EMELKKREAKANAEQAAKTDIGWGHQIRSYVLQPYQL 331
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
V+D++TG Q + + VLDG+I PFIEA ++ R
Sbjct: 332 VKDLRTGAQSTNPSEVLDGDIDPFIEAALSQR 363
>gi|296394151|ref|YP_003659035.1| peptide subunit release factor 2 [Segniliparus rotundus DSM 44985]
gi|296181298|gb|ADG98204.1| peptide chain release factor 2 [Segniliparus rotundus DSM 44985]
Length = 372
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 164/328 (50%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LW+D + EV LA + A+ LR + ++ ++ +LAE E G + A
Sbjct: 43 SLWEDQERGQEVTSGLARKQATLRAVTGLRSRLDDLHVLYELAEDEEGAQGQEALEEADT 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ E+ LL G D A VTI++G+ GI WA+ L+ MY+RWA++ +
Sbjct: 103 ERKTLRAEIESLEVRTLLNGEYDEREALVTIRSGAGGIDAADWAQMLMRMYIRWAERHKH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVEVYDISYAEEAGIKSATFAVKSAYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFADVE 222
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
V+P+ T P+ +I + S P G+ + A I H+PTGI V E++
Sbjct: 223 VLPVVGTTDHIDVPEAEIRVDVYRSSGPG--GQSVNTTDSAVRITHLPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + ++ +K + + W + R YV PY++V+D++T
Sbjct: 281 QLQNKLSAMRVLQAKLLERRRHEEQEQLNALKGDGGTS-WGTQMRSYVLAPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +VLDG I F+E+ I RRS
Sbjct: 340 EYEESNPGAVLDGAIDGFLESGIRWRRS 367
>gi|116494437|ref|YP_806171.1| protein chain release factor B [Lactobacillus casei ATCC 334]
gi|227535599|ref|ZP_03965648.1| peptide chain release factor RF2 [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239631186|ref|ZP_04674217.1| peptide chain release factor 2 [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065947|ref|YP_003787970.1| protein chain release factor B [Lactobacillus casei str. Zhang]
gi|385819561|ref|YP_005855948.1| Peptide chain release factor 2 [Lactobacillus casei LC2W]
gi|385822722|ref|YP_005859064.1| Peptide chain release factor 2 [Lactobacillus casei BD-II]
gi|409996683|ref|YP_006751084.1| peptide chain release factor 2 [Lactobacillus casei W56]
gi|417980132|ref|ZP_12620813.1| peptide chain release factor 2 [Lactobacillus casei 12A]
gi|417986221|ref|ZP_12626793.1| peptide chain release factor 2 [Lactobacillus casei 32G]
gi|417989104|ref|ZP_12629623.1| peptide chain release factor 2 [Lactobacillus casei A2-362]
gi|417992432|ref|ZP_12632789.1| peptide chain release factor 2 [Lactobacillus casei CRF28]
gi|418001542|ref|ZP_12641682.1| peptide chain release factor 2 [Lactobacillus casei UCD174]
gi|418004633|ref|ZP_12644649.1| peptide chain release factor 2 [Lactobacillus casei UW1]
gi|418010342|ref|ZP_12650120.1| peptide chain release factor 2 [Lactobacillus casei Lc-10]
gi|116104587|gb|ABJ69729.1| bacterial peptide chain release factor 2 (bRF-2) [Lactobacillus
casei ATCC 334]
gi|227186729|gb|EEI66796.1| peptide chain release factor RF2 [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239525651|gb|EEQ64652.1| peptide chain release factor 2 [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438354|gb|ADK18120.1| Protein chain release factor B [Lactobacillus casei str. Zhang]
gi|327381888|gb|AEA53364.1| Peptide chain release factor 2 [Lactobacillus casei LC2W]
gi|327385049|gb|AEA56523.1| Peptide chain release factor 2 [Lactobacillus casei BD-II]
gi|406357695|emb|CCK21965.1| Peptide chain release factor 2 [Lactobacillus casei W56]
gi|410525359|gb|EKQ00261.1| peptide chain release factor 2 [Lactobacillus casei 12A]
gi|410526414|gb|EKQ01301.1| peptide chain release factor 2 [Lactobacillus casei 32G]
gi|410533423|gb|EKQ08102.1| peptide chain release factor 2 [Lactobacillus casei CRF28]
gi|410539696|gb|EKQ14222.1| peptide chain release factor 2 [Lactobacillus casei A2-362]
gi|410546314|gb|EKQ20573.1| peptide chain release factor 2 [Lactobacillus casei UCD174]
gi|410549171|gb|EKQ23346.1| peptide chain release factor 2 [Lactobacillus casei UW1]
gi|410554066|gb|EKQ28050.1| peptide chain release factor 2 [Lactobacillus casei Lc-10]
Length = 368
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 160/326 (49%), Gaps = 21/326 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDL--RYKAEEAKLIAQLAEMEAI----DYGLFKR 60
WDD +E K+ D+ NALK+ R+ A E +L A E + D L +
Sbjct: 42 FWDD----SEAAQKVIDN---NNALKEKHDRFYALENELEDLEAGFELLQDEPDKDLQQE 94
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D+ + LD+YEM LL GP D A + I G+ G + W L+ MY RWAD+
Sbjct: 95 EEAKIKDLQEKLDKYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQ 154
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G++ V D G+KS T+ E A+G L E G H L+ F + H +
Sbjct: 155 NGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRH-TSF 213
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A VDV+P L+ S ++ + ED+ +F S G+ + A + H+PTGI S
Sbjct: 214 ASVDVMPE-LDNSIEVDLRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQA 272
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
+R+ F NK A+ LKAKL E + I+ E + + R YV HPY +V+D
Sbjct: 273 QRSQFQNKATAMAMLKAKLYQREEEAKRAKAKAIQGEQKDVAFGSQIRSYVFHPYTMVKD 332
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + + N+V+DG++ PFI A++
Sbjct: 333 HRTNYETGNGNAVMDGDLNPFINAYL 358
>gi|363890707|ref|ZP_09318023.1| peptide chain release factor 2 [Eubacteriaceae bacterium CM5]
gi|361964449|gb|EHL17484.1| peptide chain release factor 2 [Eubacteriaceae bacterium CM5]
Length = 344
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 163/324 (50%), Gaps = 9/324 (2%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+ + + W+D + ++L K S ++ L+ + + + + L E+ D L +
Sbjct: 20 INSQDFWNDRENAQKILKK---SKQIQTKLESYNTASSKLEDLEVLFELATEDENLEEEL 76
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
+ DV + Q + LL G D A +++ +G+ G+ + W + LL MY R+A
Sbjct: 77 IKEIDDVQADIKQLSLQVLLSGEYDANNAILSVHSGTGGLDAQDWTQMLLRMYTRFAQNM 136
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
G++ +D G+KSAT+ E + A+GYL E G H L+ + S + A
Sbjct: 137 GFKIYYIDIQQDPEAGIKSATLHIEGDNAYGYLKCEKGVHRLVRISPFDSSGKRHTSFAS 196
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
VDV+P L+ S + I+ +DL + S G+ + + A I HIPTG+ VQ ER
Sbjct: 197 VDVLPE-LDDSIKIDINPKDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGVVVQCQNER 255
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ F+NK A+ L AKL+ + + + I+ + + W + R YV PY +V+D +
Sbjct: 256 SQFSNKDTAMKMLMAKLIELKELEHKDKIEDIQGKYSLIAWGSQIRSYVFQPYTMVKDHR 315
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI 320
T ++ + SV+DG+I PFI A++
Sbjct: 316 TNFEIGNITSVMDGDIMPFINAYL 339
>gi|325849490|ref|ZP_08170771.1| peptide chain release factor 2 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480110|gb|EGC83185.1| peptide chain release factor 2 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 369
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 164/331 (49%), Gaps = 18/331 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYK-AEEAKLIAQLAEM-EAIDYGLFKRAYR 63
N WDD K+ E++ L+D +L+ + +++ LI + E E +D +
Sbjct: 45 NFWDDSQKAQEIMADLSDKKDDYKTFINLKEELKDQSDLIDIIEETNEELDSLV---DVE 101
Query: 64 ASLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
SL++ K + +++ L G D A + I AG+ G+ WAE L+ MY R+ ++
Sbjct: 102 NSLNMLKKEISSFKIKTELDGEYDRNNAYMVIHAGAGGLEATDWAEMLMRMYTRFFERRN 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
++ + D + GG+KSATI + +A+GYL GE G H L+ + S + A +
Sbjct: 162 FKFDITDLNNEEAGGIKSATIHIKGSFAYGYLKGERGVHRLVRISPFDSSKRRHTSFASI 221
Query: 181 DVVP-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
D+ P + +E P DL+I + + G+ + A I HIPTG+ S
Sbjct: 222 DIFPELNDDMSVEIDPKDLRID----TYRASGAGGQHVNKTDSAVRITHIPTGVIASSQA 277
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
ER+ NK A+ L AKL I E+ + I+ W + R YV HPY LV+D
Sbjct: 278 ERSQTQNKETAMKLLLAKLTQIKEEEHREKIEDIQGNYTQIAWGSQIRSYVFHPYTLVKD 337
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
+T ++ + SV+DG+I FI+A++ ++ S
Sbjct: 338 HRTNFEVGNVESVMDGDIDGFIDAYLANKGS 368
>gi|387759013|ref|YP_006065991.1| peptide chain release factor 2 [Streptococcus pneumoniae INV200]
gi|418199610|ref|ZP_12836057.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47976]
gi|419495051|ref|ZP_14034771.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47461]
gi|419514311|ref|ZP_14053939.1| peptide chain release factor 2 [Streptococcus pneumoniae
England14-9]
gi|421265785|ref|ZP_15716668.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR27]
gi|421267959|ref|ZP_15718831.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR95]
gi|301801602|emb|CBW34300.1| peptide chain release factor 2 [Streptococcus pneumoniae INV200]
gi|353866288|gb|EHE46190.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47976]
gi|379597415|gb|EHZ62218.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47461]
gi|379638801|gb|EIA03346.1| peptide chain release factor 2 [Streptococcus pneumoniae
England14-9]
gi|395868521|gb|EJG79638.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR27]
gi|395871383|gb|EJG82489.1| peptide chain release factor 2 [Streptococcus pneumoniae SPAR95]
Length = 325
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 170/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K ++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + +IPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|152977397|ref|YP_001376914.1| peptide chain release factor 2 [Bacillus cytotoxicus NVH 391-98]
gi|152026149|gb|ABS23919.1| peptide chain release factor 2 [Bacillus cytotoxicus NVH 391-98]
Length = 327
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 11/326 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + + ++ A++LK +V + L E ++ +L + E D L +
Sbjct: 6 FWDDQ-QGAQTVINEANALKDMVGKFRQLDETFENLEVTHELLK-EEYDKDLHEELESEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++YE+ LL P D A + + G+ G + W LL MY RWA+K G++
Sbjct: 64 KSLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP F ++++ EDL + + G+ + A I HIPT V ER+
Sbjct: 183 VPEF-NDEVEIEVRTEDLKVDTYRASGAGGQHVNTTDSAVRITHIPTNTIVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LKAKL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 242 KNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNT 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRS 325
++ + +V+DG I PFI+A++ SR S
Sbjct: 302 EVGNVQAVMDGEIDPFIDAYLRSRIS 327
>gi|334881786|emb|CCB82692.1| peptide chain release factor 2 (RF-2) [Lactobacillus pentosus
MP-10]
gi|339637510|emb|CCC16442.1| peptide chain release factor 2 (RF-2) [Lactobacillus pentosus IG1]
Length = 357
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 129/255 (50%), Gaps = 6/255 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
L QY +S LL GP D A + I G+ G + W LL MY RWA ++ VD
Sbjct: 95 LQQYRLSLLLDGPYDRNNAILEIHPGAGGTESQDWGSMLLRMYTRWAASHDFKVETVDYQ 154
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
G+KS T+ A+GYL E G H L+ + + + A VDV+P L+
Sbjct: 155 AGDEAGIKSVTLLISGHNAYGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDVMPE-LDD 213
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
+ D+ + EDL ++ + G+ + A I HIPTGI V S +R+ N+ AL
Sbjct: 214 TVDIDVRPEDLKIDVYRASGAGGQHVNKTSSAVRITHIPTGIVVASQAQRSQLQNRQTAL 273
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
N L+AKL E+ + I+ E + W + R YV HPY +V+D +T + D +
Sbjct: 274 NMLRAKLYEREEEKKAKERAAIQGEQMDIGWGSQIRSYVFHPYTMVKDHRTNYESHDGQA 333
Query: 307 VLDGNIKPFIEAHIN 321
V+DG++ PF++A++
Sbjct: 334 VMDGDLDPFMDAYLQ 348
>gi|417809962|ref|ZP_12456643.1| peptide chain release factor 2 [Lactobacillus salivarius GJ-24]
gi|335350886|gb|EGM52382.1| peptide chain release factor 2 [Lactobacillus salivarius GJ-24]
Length = 355
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 159/324 (49%), Gaps = 16/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEA----KLIAQLAEMEAIDYGLFKRAY 62
WDD K+ EV+ + D +L + +L+ ++ + E + L +
Sbjct: 28 FWDDQEKAQEVIAENNDLKAKFETFHELEESISDLGVSLELLQEIPDDEELQADLEENYQ 87
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A KLL Y+++ LL D A + I G+ G + W LL MY RWA +
Sbjct: 88 HAE----KLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTESQDWGSMLLRMYTRWASQHD 143
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ VD + G+KS T+ E + A+GYL E G H L+ F + H + A
Sbjct: 144 FKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHRLVRISPFDSAGRRH-TSFAS 202
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ S ++++ ED+ +F + G+ + A + HIPTGI V S +R
Sbjct: 203 VNVMPE-LDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGIVVSSQAQR 261
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ F N+ A N L+AKL + E+ + I+ E + W + R YV HPY +V+D +
Sbjct: 262 SQFQNRATAENMLRAKLYQLEMEEKEKQRAAIQGEQLDIGWGSQIRSYVFHPYSMVKDHR 321
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHI 320
T + + +V+DG++ PFI A++
Sbjct: 322 TDYETGNIQAVMDGDLDPFINAYL 345
>gi|312109506|ref|YP_003987822.1| peptide chain release factor 2 [Geobacillus sp. Y4.1MC1]
gi|311214607|gb|ADP73211.1| Peptide chain release factor 2 [Geobacillus sp. Y4.1MC1]
Length = 367
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A++LK +V + L + E ++ +L + E D L +
Sbjct: 45 DFWDD-QKAAQTVINEANALKDLVGEFQSLEERFENLEVTYELIKEEP-DEDLQQELVTE 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ ++K ++E+ LL P D A + + G+ G + WA LL MY RWA+K+G++
Sbjct: 103 AKRLTKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGFK 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 163 VETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 221
Query: 182 VVPLFLETSPDLQISDEDL-----LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+P E D++I + S G+ + A I HIPTGI V ER
Sbjct: 222 VIP---EMDDDIEIEIRPEEIRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQSER 278
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ KALN LKAKL E+ + ++ I+ E W + R YV HPY LV+D +
Sbjct: 279 SQIKNREKALNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWGNQIRSYVFHPYSLVKDHR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T +++ + +V+DG I FI+A++ S+
Sbjct: 339 TNVEVGNVQAVMDGEIDIFIDAYLRSK 365
>gi|336233899|ref|YP_004586515.1| hypothetical protein Geoth_0394 [Geobacillus thermoglucosidasius
C56-YS93]
gi|335360754|gb|AEH46434.1| hypothetical protein Geoth_0394 [Geobacillus thermoglucosidasius
C56-YS93]
Length = 367
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A++LK +V + L + E ++ +L + E D L +
Sbjct: 45 DFWDD-QKAAQTVINEANALKDLVGEFQSLEERFENLEVTYELIKEEP-DEDLQQELVTE 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ ++K ++E+ LL P D A + + G+ G + WA LL MY RWA+K+G++
Sbjct: 103 AKRLTKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGFK 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 163 VETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 221
Query: 182 VVPLFLETSPDLQISDEDL-----LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+P E D++I + S G+ + A I HIPTGI V ER
Sbjct: 222 VIP---EMDDDIEIEIRPEEIRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQSER 278
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ KALN LKAKL E+ + ++ I+ E W + R YV HPY LV+D +
Sbjct: 279 SQIKNREKALNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWGNQIRSYVFHPYSLVKDHR 338
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T +++ + +V+DG I FI+A++ S+
Sbjct: 339 TNVEVGNVQAVMDGEIDIFIDAYLRSK 365
>gi|228477420|ref|ZP_04062056.1| peptide chain release factor 2 [Streptococcus salivarius SK126]
gi|340398917|ref|YP_004727942.1| peptide chain release factor 2 [Streptococcus salivarius CCHSS3]
gi|387761386|ref|YP_006068363.1| peptide chain release factor 2 [Streptococcus salivarius 57.I]
gi|387784070|ref|YP_006070153.1| peptide chain release factor 2 [Streptococcus salivarius JIM8777]
gi|418017896|ref|ZP_12657452.1| peptide chain release factor 2 [Streptococcus salivarius M18]
gi|421452340|ref|ZP_15901701.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Streptococcus
salivarius K12]
gi|228250855|gb|EEK10043.1| peptide chain release factor 2 [Streptococcus salivarius SK126]
gi|338742910|emb|CCB93418.1| bacterial peptide chain release factor 2 (BRF-2) [Streptococcus
salivarius CCHSS3]
gi|338744952|emb|CCB95318.1| peptide chain release factor 2 [Streptococcus salivarius JIM8777]
gi|339292153|gb|AEJ53500.1| peptide chain release factor 2 [Streptococcus salivarius 57.I]
gi|345526745|gb|EGX30056.1| peptide chain release factor 2 [Streptococcus salivarius M18]
gi|400182771|gb|EJO17033.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Streptococcus
salivarius K12]
Length = 337
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +++L ++E +L ++ E D + +
Sbjct: 16 DFWNDNIAAQKTSQELNELKMKYETFNNMQEL---SDETELYLEMLEE---DDSVQEELE 69
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WA+ LL MY R+ + +G
Sbjct: 70 ETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLLRMYQRYGNAKG 129
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 130 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 188
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 189 VEVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 247
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 248 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 307
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I+ FI+A++ R
Sbjct: 308 TGYEVAQVDKVMDGDIEGFIDAYLKWR 334
>gi|389578252|ref|ZP_10168279.1| peptide chain release factor 2 [Desulfobacter postgatei 2ac9]
gi|389399887|gb|EIM62109.1| peptide chain release factor 2 [Desulfobacter postgatei 2ac9]
Length = 366
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 7/323 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++ + W+DP K+ E+L + +++ + + E+ ++ +LA E+ D +
Sbjct: 37 LIAKEDFWNDPDKATEMLKERTTIAALIDTCNAIFSEIEDVDVLLELAREES-DKAAEEE 95
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A + D+ K + ++ + L G +D A V+I AG+ G + WAE L MY RW DK
Sbjct: 96 AAQMLADLEKKVKRFSLEITLDGEDDARDAIVSINAGAGGTDSQDWAEMLFRMYTRWIDK 155
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+GY R++D G+K T+ +G++ E+G H L+ N S + + A
Sbjct: 156 KGYNCRIIDYQEGDEAGIKGVTLYVSGPNCYGFMKAESGVHRLVRISPFNASGKRQTSFA 215
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V V P ++ ++ I + DL ++ + G+ + A I H PTG+ VQ E
Sbjct: 216 AVFVYPE-IKDEINIDIDEGDLRIDVYRASGAGGQHVNKTSSAVRITHFPTGVVVQCQQE 274
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
+ N+ A+ LK++L + ++ + N W + R YV HPY++V+D
Sbjct: 275 SSQHRNREIAMKVLKSRLYQLEKQKQEQKKQSLHDGKDDNAWGSQIRSYVLHPYRMVKDH 334
Query: 296 KTGIQLPDFNSVLDGNIKPFIEA 318
+ +++ D + VL+G+I PFIE
Sbjct: 335 RIDLEIGDVDRVLNGDIDPFIEG 357
>gi|157363562|ref|YP_001470329.1| peptide chain release factor 2 [Thermotoga lettingae TMO]
gi|166977374|sp|A8F531.1|RF2_THELT RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|157314166|gb|ABV33265.1| peptide chain release factor 2 [Thermotoga lettingae TMO]
Length = 367
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 165/319 (51%), Gaps = 9/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W D K+ E+ K+ ++++ + ++ E+ + +L+E D G+ + +
Sbjct: 45 IWKDQRKAGEISKKVRRIKELLSDISEIERNFEDIDVGIELSEE---DPGIAQDIEKIVQ 101
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+V K + ++++ +L P D A ++I G+ G WA+ LL MY+RWA+++G+
Sbjct: 102 EVEKNIRRFQLELILNDPLDQNNAYLSIHPGAGGTESHDWAQMLLRMYMRWAERKGFIVE 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSATI + EYA+GYL E G H L+ + + + A V+VVP
Sbjct: 162 LLDFQPGEEAGLKSATILVKGEYAYGYLKHERGVHRLVRISPFDAAKRRHTSFASVNVVP 221
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ D++I ED+ F + G+ + A I H+PTGI V ER+ N
Sbjct: 222 E-ISDDIDVEIKPEDIRIDTFRASGHGGQYVNRTDSAVRITHLPTGIVVSCQSERSQHQN 280
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ LKAKL + + + I+ E W + R Y+ PY LV+D +T I+
Sbjct: 281 KALAMKVLKAKLYQLELAKRREQLDEIQGELKEISWGNQIRSYILQPYTLVKDHRTDIET 340
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+F++VLDG + FIEA +
Sbjct: 341 GNFDAVLDGELDQFIEAEL 359
>gi|229829544|ref|ZP_04455613.1| hypothetical protein GCWU000342_01640 [Shuttleworthia satelles DSM
14600]
gi|229791533|gb|EEP27647.1| hypothetical protein GCWU000342_01640 [Shuttleworthia satelles DSM
14600]
Length = 379
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 152/311 (48%), Gaps = 22/311 (7%)
Query: 16 EVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKL-LDQ 74
E+ KL +S++ + L D+ + ++A ++ ++ R +D K ++
Sbjct: 69 EIADKLKNSIEEIGMLMDMANEEDDADMVGEI---------------RLMMDQMKEDFER 113
Query: 75 YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK 134
+ LL G D A VT+ AG+ G W L MY RWA +G+ +D
Sbjct: 114 VRIKTLLSGEFDANNAIVTLHAGAGGTEACDWTAMLYRMYTRWAAAQGFEVEELDYLDGD 173
Query: 135 NGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPD 192
G+K+ T + E A+GYL E G H L+ N + + + + DV+P LE D
Sbjct: 174 EAGIKAVTFQVNGENAYGYLKSEKGVHRLVRISPFNANGKRQTSFSSCDVMPE-LEQDLD 232
Query: 193 LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKALNRL 249
+++ DED+ + S G+ + A I H PTGI VQ ER+ NK KA+ L
Sbjct: 233 VEVKDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIVVQCQNERSQHMNKDKAMQML 292
Query: 250 KAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLD 309
KAKL ++ E+ + I+ E W + R YV PY +V+D++TG + + ++V+D
Sbjct: 293 KAKLYMLKMEEQKAKAEGIRGEVTDIAWGNQIRSYVFQPYTMVKDLRTGEETGNVSAVMD 352
Query: 310 GNIKPFIEAHI 320
G+I FI A++
Sbjct: 353 GDINLFINAYL 363
>gi|340355245|ref|ZP_08677937.1| peptide chain release factor RF2 [Sporosarcina newyorkensis 2681]
gi|339622685|gb|EGQ27200.1| peptide chain release factor RF2 [Sporosarcina newyorkensis 2681]
Length = 334
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 135/259 (52%), Gaps = 6/259 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
+D++++ LL D A + I +G+ G + WA LL MY RWA+ G++ +D
Sbjct: 77 MDKFDLQMLLSDEFDKNNAVLEIHSGAGGTESQDWASMLLRMYTRWAEHHGFKVETLDYQ 136
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
GVKS T+ + A+GYL E G H L+ + S + + ++V+P F +
Sbjct: 137 AGDEAGVKSVTLSVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFSSIEVMPEF-DG 195
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
DL + ED+ + S G+ + A + HIPTG V ER+ N+ +A+
Sbjct: 196 DIDLDLKTEDIKVDTYRSSGAGGQHVNTTDSAVRMTHIPTGAIVTCQTERSQIKNRERAM 255
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
N LKAK+ I E+ + ++ I+ E W + R YV HPY +V+D +T + + +S
Sbjct: 256 NLLKAKIYQIRVEEEEARLAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGNVSS 315
Query: 307 VLDGNIKPFIEAHINSRRS 325
V+DG++ PFI A++ SR S
Sbjct: 316 VMDGDLDPFINAYLRSRIS 334
>gi|120436153|ref|YP_861839.1| peptide chain release factor 2 [Gramella forsetii KT0803]
gi|117578303|emb|CAL66772.1| peptide chain release factor 2 [Gramella forsetii KT0803]
Length = 333
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 167/328 (50%), Gaps = 25/328 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP K+ +++ K VNA K E+A+ + + ++E I Y +K +
Sbjct: 9 DFWDDPKKAEQIM-------KEVNAEKSWVGDYEKAETLVE--DLEVI-YDFYKEDEATA 58
Query: 66 LDVSK-------LLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
DV + L++ E +L D A + I AG+ G WAE L+ MY+ WA
Sbjct: 59 EDVQQRNDKAVELIEDLEFKNMLSEEGDSMSAVLQITAGAGGTESCDWAEMLMRMYLMWA 118
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
+K Y+ R ++ G+K+ T+E E EYAFG+L GE G H L+ F + + H
Sbjct: 119 EKRKYKIRELNYQAGDVAGIKTVTLEIEGEYAFGWLKGENGVHRLVRISPFDSNAKRH-T 177
Query: 176 TLACVDVVPLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A + PL ++ S ++ I+ DL + S G+ + + A ++H PTGI +++
Sbjct: 178 SFASAYIYPL-VDDSIEIDINPSDLSWETMRSSGAGGQNVNKVETAVRLRHEPTGIVIEN 236
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
R+ NK KA+ LK++L I ++ I+ + W + R YV HPYKLV
Sbjct: 237 SETRSQLENKNKAMQLLKSQLFEIELQKKQEQRREIEDSKMKIEWGSQIRNYVMHPYKLV 296
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+DV+T + + + V++GNI F+++ +
Sbjct: 297 KDVRTAEETGNVDDVMNGNIDAFLKSFL 324
>gi|423718627|ref|ZP_17692809.1| peptide chain release factor 2 [Geobacillus thermoglucosidans
TNO-09.020]
gi|383368229|gb|EID45502.1| peptide chain release factor 2 [Geobacillus thermoglucosidans
TNO-09.020]
Length = 327
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 15/327 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A++LK +V + L + E ++ +L + E D L +
Sbjct: 5 DFWDD-QKAAQTVINEANALKDLVGEFQSLEERFENLEVTYELIKEEP-DEDLQQELVTE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ ++K ++E+ LL P D A + + G+ G + WA LL MY RWA+K+G++
Sbjct: 63 AKRLTKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLFLETSPDLQISDEDL-----LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+P E D++I + S G+ + A I HIPTGI V ER
Sbjct: 182 VIP---EMDDDIEIEIRPEEIRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQSER 238
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ KALN LKAKL E+ + ++ I+ E W + R YV HPY LV+D +
Sbjct: 239 SQIKNREKALNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWGNQIRSYVFHPYSLVKDHR 298
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
T +++ + +V+DG I FI+A++ S+
Sbjct: 299 TNVEVGNVQAVMDGEIDIFIDAYLRSK 325
>gi|392304997|emb|CCI71360.1| peptide chain release factor 2 [Paenibacillus polymyxa M1]
Length = 331
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ V+ ++ V++ + LR + E+A ++ +LAE E D L +
Sbjct: 5 DFWDDNEKAQGVIAEMNAVKSSVDSYEQLRQEYEDAGMMVELAEEEG-DEALVGEVENSI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L+++E+ LL P D A + + G+ G + W + LL MY RW +K G++
Sbjct: 64 KSLLSKLEEFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRMYTRWGEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D G+KS T+ + A+GYL E G H L+ F + H + ++C DV
Sbjct: 124 ETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP + D++I EDL + + G+ + A I H+PTGI V ER+
Sbjct: 183 VPEIAD-DVDIEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGIVVTCQNERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L++KL E+ + I+ E W + R YV HPY +V+D +T +
Sbjct: 242 KNRERAMTMLRSKLYERKIEEQQQQLDEIRGEQSDIAWGSQIRSYVFHPYSMVKDHRTSV 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ + +V+DG++ PFI+ ++ S+
Sbjct: 302 ETGNVGAVMDGDLDPFIDGYLRSQ 325
>gi|15902709|ref|NP_358259.1| peptide chain release factor 2 [Streptococcus pneumoniae R6]
gi|116516272|ref|YP_816152.1| peptide chain release factor 2 [Streptococcus pneumoniae D39]
gi|182683675|ref|YP_001835422.1| peptide chain release factor 2 [Streptococcus pneumoniae CGSP14]
gi|303255830|ref|ZP_07341871.1| peptide chain release factor 2 [Streptococcus pneumoniae BS455]
gi|15458252|gb|AAK99469.1| Peptide chain release factor 2 [Streptococcus pneumoniae R6]
gi|116076848|gb|ABJ54568.1| peptide chain release factor 2 [Streptococcus pneumoniae D39]
gi|182629009|gb|ACB89957.1| peptide chain release factor 2 [Streptococcus pneumoniae CGSP14]
gi|302597214|gb|EFL64319.1| peptide chain release factor 2 [Streptococcus pneumoniae BS455]
Length = 329
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 170/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K ++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 9 DFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 64
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 65 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + +IPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|423484791|ref|ZP_17461480.1| peptide chain release factor 2 [Bacillus cereus BAG6X1-2]
gi|401137377|gb|EJQ44959.1| peptide chain release factor 2 [Bacillus cereus BAG6X1-2]
Length = 326
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 157/332 (47%), Gaps = 27/332 (8%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + V+ + NALKD+ + + + EM + L K Y L
Sbjct: 6 FWDDQQGAQAVINE-------ANALKDMVGRFRQLDETFENLEM---THDLLKEEYDEDL 55
Query: 67 ------DVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
+V L +++YE+ LL P D A + + G+ G + W LL MY RW
Sbjct: 56 HEELESEVKTLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHE 174
A+K G++ VD G+KS T+ + A+GYL E G H L+ F + H
Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQ 231
+ ++C +VVP F ++++ EDL + + G+ + A I HIPT V
Sbjct: 176 SFVSC-EVVPEF-NDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHIPTNTVVT 233
Query: 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKL 291
ER+ N+ A+ LKAKL E+ + + I+ E W + R YV HPY L
Sbjct: 234 CQSERSQIKNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWGSQIRSYVFHPYSL 293
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
V+D +T ++ + +V+DG I PFI+A++ SR
Sbjct: 294 VKDHRTNTEVGNVQAVMDGEINPFIDAYLRSR 325
>gi|284989796|ref|YP_003408350.1| peptide chain release factor 2 [Geodermatophilus obscurus DSM
43160]
gi|284063041|gb|ADB73979.1| peptide chain release factor 2 [Geodermatophilus obscurus DSM
43160]
Length = 370
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 174/328 (53%), Gaps = 9/328 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + + KL+ + +++LR + ++ L+ ++A +E D A R
Sbjct: 43 DLWNDVEAAQALTSKLSYLQGDLRRVEELRSRLDDVGLLHEMA-VEESDEATAAEAEREL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +D+ E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ Y
Sbjct: 102 ASLRQAIDELEVRTLLSGEYDSREALVTIRSEAGGVDAADFAEMLMRMYLRWAERHRYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 ELYDVSYAEEAGIKSATFAVKQPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ +F S G+ + A I H+PTGI V E++
Sbjct: 222 PV-VEQTDHVDIPENEIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+A+LL E+ + + ++ E + W + R YV HPY++V+D++T +
Sbjct: 281 NRAAAMRVLQARLLARRQEEQRAEMDALRGEG--SSWGNQMRSYVLHPYQMVKDLRTEQE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDT 328
+ ++VLDG+I PFIEA I RR ++
Sbjct: 339 TGNTSAVLDGDIDPFIEAGIRWRRQQES 366
>gi|229164123|ref|ZP_04292059.1| Peptide chain release factor 2 [Bacillus cereus R309803]
gi|228619359|gb|EEK76249.1| Peptide chain release factor 2 [Bacillus cereus R309803]
Length = 326
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 159/324 (49%), Gaps = 11/324 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + +V++ A++LK +V + L E ++ +L + E D L +
Sbjct: 6 FWDDQ-QGAQVVINEANALKEMVGKFRKLDETFENLEITHELLK-EEYDEDLHEELEAEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++YE+ LL P D A + + G+ G + W LL MY RWA+K G++
Sbjct: 64 KGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP F +++I EDL + + G+ + A I H PT V ER+
Sbjct: 183 VPEF-NDEVEIEIRSEDLKIDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LKAKL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 242 KNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNT 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I PFI+A++ SR
Sbjct: 302 EVGNVQAVMDGEIDPFIDAYLRSR 325
>gi|168177506|ref|ZP_02612170.1| peptide chain release factor 2 [Clostridium botulinum NCTC 2916]
gi|421839233|ref|ZP_16272865.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001627]
gi|182671219|gb|EDT83193.1| peptide chain release factor 2 [Clostridium botulinum NCTC 2916]
gi|409735367|gb|EKN36957.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001627]
Length = 325
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 163/328 (49%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++V+P L +++I EDL + + G+ + + A I H+PTGI VQ
Sbjct: 175 SFASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKERIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYL 321
>gi|322372865|ref|ZP_08047401.1| peptide chain release factor 2 [Streptococcus sp. C150]
gi|419707767|ref|ZP_14235245.1| Peptide chain release factor 2 [Streptococcus salivarius PS4]
gi|321277907|gb|EFX54976.1| peptide chain release factor 2 [Streptococcus sp. C150]
gi|383282479|gb|EIC80465.1| Peptide chain release factor 2 [Streptococcus salivarius PS4]
Length = 337
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 166/327 (50%), Gaps = 17/327 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L + N +++L ++E +L ++ E D + +
Sbjct: 16 DFWNDNIAAQKTSQELNELKMKYETFNNMQEL---SDETELYLEMLEE---DSSVQEELE 69
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ K++ YEM+ LL P D A + I GS G + WA+ LL MY R+ + +G
Sbjct: 70 ETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLLRMYQRYGNAKG 129
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D G+KS T+ FE A+G+L E G H L+ F + H +
Sbjct: 130 FKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTS 188
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 189 VEVMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 247
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +
Sbjct: 248 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHR 307
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSR 323
TG ++ + V+DG+I+ FI+A++ R
Sbjct: 308 TGYEVAQVDKVMDGDIEGFIDAYLKWR 334
>gi|308071079|ref|YP_003872684.1| peptide chain release factor 2 [Paenibacillus polymyxa E681]
gi|305860358|gb|ADM72146.1| Peptide chain release factor 2 (RF-2) [Paenibacillus polymyxa E681]
Length = 331
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 170/326 (52%), Gaps = 13/326 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDY--GLFKRAYR 63
+ WDD K+ V+ ++ V++ + LR + E+A ++A+LA+ E + G + + R
Sbjct: 5 DFWDDNDKAQAVIAEMNAVKSSVDSYEQLRLEYEDAGMMAELADEEGDETLAGEIENSIR 64
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ L SKL ++E+ LL P D A + + G+ G + W + LL MY RWA+K G+
Sbjct: 65 SLL--SKLQ-EFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRMYTRWAEKRGF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T+ + A+GYL E G H L+ F + H + ++C
Sbjct: 122 KVETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC- 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
DVVP + D++I EDL + + G+ + A I H+P+GI V ER+
Sbjct: 181 DVVPEIAD-DVDVEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPSGIVVTCQNERS 239
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
N+ +A+ L++KL E+ + I+ E W + R YV HPY +V+D +T
Sbjct: 240 QIKNREQAMTMLRSKLYERKIEEQRQQLDEIRGEQSDIAWGSQIRSYVFHPYSMVKDHRT 299
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG++ PFI+ ++ S+
Sbjct: 300 SVETGNVGAVMDGDLDPFIDGYLRSQ 325
>gi|343523632|ref|ZP_08760593.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 175 str.
F0384]
gi|343399849|gb|EGV12370.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 373
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 171/334 (51%), Gaps = 17/334 (5%)
Query: 6 NLWDDPTKSNEVLVKLADS---LKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDP + V L+ + LK V +L + R + EA + E + A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGE-RIEDLEAMVELGGEEEGEDAAEILAEAE 101
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+SK L E+ LL G D A +TI++G+ G+ +AE LL MY RWA++
Sbjct: 102 TDLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADFAEMLLRMYTRWAERHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V++ + G+KS T E YA+G LS E G H L+ + + + A V
Sbjct: 162 YPVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V E++
Sbjct: 222 EVIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSMQDEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQD 294
N+ A+ L+++LL++ ++ K+E ++ W + R YV +PY++V+D
Sbjct: 281 QIQNRAAAMRVLQSRLLLLKQQEE----DAKKKELAGDVKASWGDQMRSYVLNPYQMVKD 336
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++T ++ + +SV DG+I FI+A I R+ +T
Sbjct: 337 LRTNFEVGNPDSVFDGDIDGFIDAGIRWRKQQET 370
>gi|320116558|ref|YP_004186717.1| peptide chain release factor 2 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|319929649|gb|ADV80334.1| Peptide chain release factor 2 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 368
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 160/322 (49%), Gaps = 7/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D KS E+ K +++ L K E+ + +L +E D + +
Sbjct: 44 FWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLSTLIELG-LEEGDESITDEVDKEYK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K L+ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 103 ELKKKLEDLKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFEVE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KS T+ + +A+GYL E G H L+ + + + A V+V+P
Sbjct: 163 TLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
LE +++I EDL + + G+ + + A I H+PTGI V ER+ N
Sbjct: 223 -ELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQSERSQIQN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LKAKLL ++ ++ + +K E W + R YV PY LV+D +T ++
Sbjct: 282 RETAMKMLKAKLLDLMMKEKKEKIEDLKGEHREAAWGNQIRSYVFQPYTLVKDHRTNYEV 341
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ +V+DG I FI A++ +
Sbjct: 342 GNVQAVMDGEIDGFINAYLKQK 363
>gi|403382580|ref|ZP_10924637.1| protein PrfB [Paenibacillus sp. JC66]
Length = 334
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ +++ +L VV L + E+ +++ LAE E D L
Sbjct: 5 DFWDDNDRAQKMIAELNAVKDVVAEFASLNQEYEDLEVMLMLAEEEG-DESLESELQEGV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ L YE+ LL P D A + + G+ G + WAE LL MY RWA+K Y+
Sbjct: 64 AKLTEKLKSYELQLLLSEPYDRMNAILELHPGAGGTESQDWAEMLLRMYRRWAEKRDYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D GVKS T+ + A+GYL E G H L+ F + H + ++C DV
Sbjct: 124 EVLDYLPGDEAGVKSVTLLIKGFNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP ++ D++I EDL + + G+ + A I HIPT + V ER+
Sbjct: 183 VP-EIDDDVDIEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHIPTNVVVTCQTERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L++KL E+ ++ I+ E W + R YV HPY +V+D +T
Sbjct: 242 KNRERAMKILRSKLYERKLEEQRQELAEIRGEQREIGWGSQIRSYVFHPYSMVKDHRTQA 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ + SV+DG + I+A++ S+
Sbjct: 302 ETGNVGSVMDGELDFLIDAYLRSQ 325
>gi|307243612|ref|ZP_07525755.1| peptide chain release factor 2 [Peptostreptococcus stomatis DSM
17678]
gi|306492981|gb|EFM64991.1| peptide chain release factor 2 [Peptostreptococcus stomatis DSM
17678]
Length = 348
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 164/325 (50%), Gaps = 22/325 (6%)
Query: 6 NLWDDPTKSNEVL-------VKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI--DYG 56
+ W+D KSN++L V+L +++ +++D+ ++ +L+E ++ D
Sbjct: 24 DFWEDTDKSNKILQENKTIEVRLTQYSQLITSIEDI-------NILLELSEEDSTEEDQE 76
Query: 57 LFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+ D + LD+ M L G D A +++ +G+ G+ + WA+ LL MY+R
Sbjct: 77 IENSIIDQVKDARENLDRMTMEMLFSGQYDSNNAILSVNSGTGGLDAQDWAQMLLRMYIR 136
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHE 174
W++ GY+ +++D G+K+ATI + + A+G+L E G H L+ + S
Sbjct: 137 WSESSGYKVKLIDINSDPEAGIKTATILVQGQNAYGHLKSEKGVHRLVRISPFDSSGKRH 196
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQ 231
+ A +DVVP L ++I+ DL + S G+ + A I HIPTGI VQ
Sbjct: 197 TSFASIDVVP-ELNEDIKVEINQTDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 255
Query: 232 SLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKL 291
ER+ +NK A+ L AKL+ + E+ + ++ + W + R YV PYKL
Sbjct: 256 CQNERSQHSNKDIAMKLLMAKLIQLKEEENKERIEDLQGKYSQITWGSQIRSYVFQPYKL 315
Query: 292 VQDVKTGIQLPDFNSVLDGNIKPFI 316
V+D +T + + ++V+DG + F+
Sbjct: 316 VKDHRTNEENANVDAVMDGKLDNFM 340
>gi|302875854|ref|YP_003844487.1| peptide chain release factor 2 [Clostridium cellulovorans 743B]
gi|302578711|gb|ADL52723.1| peptide chain release factor 2 [Clostridium cellulovorans 743B]
Length = 369
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 154/321 (47%), Gaps = 7/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ ++ V + ++ + + E+ K++ ++A +E D L Y
Sbjct: 46 FWDNLERAQSVTARAKGIKDRIDLYNNFQSSVEDIKVLIEMA-IEENDSSLVTEVYNEIS 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+S ++ + +L G D A VT+ +G G W E LL MY RW +K+ +
Sbjct: 105 TLSDSVENLRLELMLSGEYDTNNAIVTLHSGVGGTDAMDWTEMLLRMYTRWCEKKAFNVE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KSAT++ YA+GYL E G H L+ N + + + A ++V P
Sbjct: 165 TLDLQVGDEAGIKSATLKVTGLYAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVTP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L +++I+ DL + + G+ + + A I HIPTGI VQ ER+ N
Sbjct: 225 -ELRQDQNVEINPSDLKVDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNERSQIQN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ ALN LK+KL+ + + + + W + R YV HPY +V+D +T IQ+
Sbjct: 284 RETALNMLKSKLVELKERAHKEKIEDLTGDLKDMGWGSQIRSYVFHPYTMVKDHRTNIQV 343
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
D V+DG + FI+ +++S
Sbjct: 344 NDVYKVMDGELDVFIKGYLHS 364
>gi|417998650|ref|ZP_12638866.1| peptide chain release factor 2 [Lactobacillus casei T71499]
gi|410540491|gb|EKQ15004.1| peptide chain release factor 2 [Lactobacillus casei T71499]
Length = 377
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 160/326 (49%), Gaps = 21/326 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDL--RYKAEEAKLIAQLAEMEAI----DYGLFKR 60
WDD +E K+ D+ NALK+ R+ A E +L A E + D L +
Sbjct: 42 FWDD----SEAAQKVIDN---NNALKEKHDRFYALENELEDLEAGFELLQDEPDKDLQQE 94
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D+ + LD+YEM LL GP D A + I G+ G + W L+ MY RWAD+
Sbjct: 95 EEAKIKDLQEKLDKYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQ 154
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G++ V D G+KS T+ E A+G L E G H L+ F + H +
Sbjct: 155 NGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRH-TSF 213
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLG 234
A VDV+P L+ S ++ + ED+ +F S G+ + A + H+PTGI S
Sbjct: 214 ASVDVMPE-LDNSIEVDLRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQA 272
Query: 235 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQD 294
+R+ F NK A+ LKAKL E + I+ E + + R YV HPY +V+D
Sbjct: 273 QRSQFQNKATAMAMLKAKLYQREEEAKRAKAKAIQGEQKDVAFGSQIRSYVFHPYTMVKD 332
Query: 295 VKTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + + N+V+DG++ PFI A++
Sbjct: 333 HRTNYETGNGNAVMDGDLNPFINAYL 358
>gi|392938875|ref|ZP_10304519.1| peptide chain release factor 2 [Thermoanaerobacter siderophilus
SR4]
gi|392290625|gb|EIV99068.1| peptide chain release factor 2 [Thermoanaerobacter siderophilus
SR4]
Length = 368
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 160/322 (49%), Gaps = 7/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D KS E+ K +++ L K E+ + +L +E D + +
Sbjct: 44 FWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLNTLIELG-LEEGDESITDEVDKEYK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K L+ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 103 ELKKKLEDLKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFEVE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KS T+ + +A+GYL E G H L+ + + + A V+V+P
Sbjct: 163 TLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
LE +++I EDL + + G+ + + A I H+PTGI V ER+ N
Sbjct: 223 -ELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQSERSQIQN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LKAKLL ++ ++ + +K E W + R YV PY LV+D +T ++
Sbjct: 282 RETAMKMLKAKLLDLMMKEKKEKIEDLKGEHREAAWGNQIRSYVFQPYTLVKDHRTNYEV 341
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ +V+DG I FI A++ +
Sbjct: 342 GNVQAVMDGEIDGFINAYLKQK 363
>gi|134300908|ref|YP_001114404.1| peptide chain release factor 2 [Desulfotomaculum reducens MI-1]
gi|134053608|gb|ABO51579.1| bacterial peptide chain release factor 2 (bRF-2) [Desulfotomaculum
reducens MI-1]
Length = 332
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 9/320 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD T S +V KLA V A L ++ +++ +L + E L + + + L
Sbjct: 6 FWDDLTYSQKVSQKLAGLKDRVAAFNTLESSLQDLEVMLELCQEEQDP--LLEEEFSSEL 63
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L++ E+ +L GP D A +++ G+ G + WA+ LL MY R+ + Y+
Sbjct: 64 STLTGRLEEMELEIMLAGPYDRGDAILSLHPGAGGTESQDWAQMLLRMYTRYCENHNYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KSATI+ A+GYL E G H L+ + + + A VDV+
Sbjct: 124 EILDLLPGDEAGIKSATIQVTGPNAYGYLRCEKGVHRLVRISPFDAAGRRHTSFASVDVL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL ++ ++ I EDL + + G+ + A I H+PTGI V ER+
Sbjct: 184 PL-VDDEVEVNIRPEDLRIDTYRAGGAGGQHVNKTDSAVRITHLPTGIVVACQNERSQTT 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LK+KL+ + ++ ++ ++ E W + R YV HPY L +D +TG +
Sbjct: 243 NRQAAMKLLKSKLIDLELQKKEDEMAALRGEQKDIAWGSQIRSYVFHPYSLAKDHRTGEE 302
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ N+V+DGNI F+ A++
Sbjct: 303 TGNVNAVMDGNIGQFVTAYL 322
>gi|291087933|ref|ZP_06347924.2| peptide chain release factor 2 [Clostridium sp. M62/1]
gi|291073455|gb|EFE10819.1| peptide chain release factor 2 [Clostridium sp. M62/1]
Length = 343
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 7/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP S ++ + + V + + L + E+ +++ ++ E D L
Sbjct: 16 FWDDPEMSTRLMREAKNLKDTVESYRKLEQEYEDIQVMLEMG-YEENDPSLIPEIQGMMD 74
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D + L+ + LL G D A + + AG+ G W L MY RWADK+G+
Sbjct: 75 DFVEKLEAIRIQTLLSGEYDNNNAILKLNAGAGGTEACDWCSMLYRMYQRWADKKGFTTA 134
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KS T++ E A+G+L E G H L+ N + + + DV+P
Sbjct: 135 VIDYLDGEEAGIKSITLQINGENAYGFLKSERGVHRLVRISPFNSAGKRQTSFVSCDVMP 194
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
E D++I+ ++L + S G+ + A I H+PTGI VQ ER+ F N
Sbjct: 195 DIKE-DLDVEINPDELRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQFQN 253
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ LK KL ++ E+ +S I+ + + + R YV PY LV+D +TG +
Sbjct: 254 KEVAMQMLKTKLYMLKQEEHAEKLSDIRGDVKDINFGNQIRSYVMQPYTLVKDHRTGAES 313
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ N+VLDG+I FI A++
Sbjct: 314 GNVNAVLDGDIDLFISAYL 332
>gi|302037377|ref|YP_003797699.1| peptide chain release factor 2 [Candidatus Nitrospira defluvii]
gi|300605441|emb|CBK41774.1| Peptide chain release factor 2 (RF-2) [Candidatus Nitrospira
defluvii]
Length = 377
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 7/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + +V + A + ++ +D + + + + +LA +E+ D GL +
Sbjct: 40 DFWKDTQAAAKVNRRKAALDRELSRWRDTERRQNDIEALLELA-LESGDAGLEQELLAEL 98
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K + Q+ + LL G D A I G+ G + WA+ LL MYVRWA+++G++
Sbjct: 99 EPFEKAVAQFRIELLLSGELDSSNAIFAIHPGAGGTESQDWAQMLLRMYVRWAEQKGFKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ YA+GYL E G H L+ + + + A V V
Sbjct: 159 ETLDLLAGDEAGIKSATLSVSGPYAYGYLKAEAGVHRLVRISPFDANKRRHTSFASVFVY 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P LE + I D+DL F + G+ + + A I HIPTGI VQ ER+
Sbjct: 219 PE-LEDDVQVVIDDKDLRVDTFRAGGAGGQNVNKVETAIRITHIPTGIVVQCQNERSQLQ 277
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKA+L + + + + I E W + R YV PY++V+D +TG +
Sbjct: 278 NRNGAMKILKARLFEVEQRKKEAEFNAIVGEKKDIAWGSQIRSYVFQPYQMVKDHRTGYE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ ++V+DG + FIEA++ +
Sbjct: 338 VGQVSAVMDGELDGFIEAYLQRK 360
>gi|332522300|ref|ZP_08398552.1| peptide chain release factor 2 [Streptococcus porcinus str.
Jelinkova 176]
gi|332313564|gb|EGJ26549.1| peptide chain release factor 2 [Streptococcus porcinus str.
Jelinkova 176]
Length = 327
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D + + +L + LKV + ++ +EE +L ++ E + G + +
Sbjct: 5 DFWNDTISAQKTSQEL-NELKVKFDTFHNMENLSEETELYMEMLEEDESVKGELEESL-- 61
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 62 -LKLDQILAAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 120
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ F+ A+G+L E G H L+ F + H + V+
Sbjct: 121 VETLDYQAGDEAGIKSVTLSFQGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTSVE 179
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 180 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDRTQ 238
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +T
Sbjct: 239 YGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 298
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I FI+A++ R + D
Sbjct: 299 FEVAQVDKVMDGDIDGFIDAYLKWRMNDD 327
>gi|195977853|ref|YP_002123097.1| peptide chain release factor 2 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225870173|ref|YP_002746120.1| peptide chain release factor 2 [Streptococcus equi subsp. equi
4047]
gi|414563741|ref|YP_006042702.1| peptide chain release factor 2 [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|195974558|gb|ACG62084.1| peptide chain release factor 2 PrfB [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225699577|emb|CAW93198.1| peptide chain release factor 2 [Streptococcus equi subsp. equi
4047]
gi|338846806|gb|AEJ25018.1| peptide chain release factor 2 [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 338
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 165/330 (50%), Gaps = 15/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL-IAQLAEMEAIDYGLFKRAYRA 64
+ W+D + + +L + D++ ++E +L + L E +++ K A
Sbjct: 16 DFWNDNMAAQKTSQELNELKLTYQTFHDMQELSDETELYLEMLDEDDSV-----KEELEA 70
Query: 65 SL-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
SL +S++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G+
Sbjct: 71 SLIKLSQMLASYEMTLLLSEPYDHSNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGF 130
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T+ E A+G+L E G H L+ F + H + V
Sbjct: 131 KVETLDYQAGDEAGIKSVTLSIEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFVSV 189
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P L+ + +++I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 190 EVMPE-LDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRT 248
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
+ N+ +A+ L+AKL + E+ V+ +K + W + R YV PY +V+D +T
Sbjct: 249 QYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRT 308
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I+ FI+A++ R D
Sbjct: 309 NFEVAQVDKVMDGDIEGFIDAYLKWRMGED 338
>gi|167038149|ref|YP_001665727.1| peptide chain release factor 2 [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|166856983|gb|ABY95391.1| peptide chain release factor 2 [Thermoanaerobacter pseudethanolicus
ATCC 33223]
Length = 330
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 160/322 (49%), Gaps = 7/322 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D KS E+ K +++ L K E+ + +L +E D + +
Sbjct: 6 FWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLSTLIELG-LEEGDESITDEVDKEYK 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K L+ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 65 ELKKKLEDLKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFEVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KS T+ + +A+GYL E G H L+ + + + A V+V+P
Sbjct: 125 TLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVLP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
LE +++I EDL + + G+ + + A I H+PTGI V ER+ N
Sbjct: 185 -ELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQSERSQIQN 243
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LKAKLL ++ ++ + +K E W + R YV PY LV+D +T ++
Sbjct: 244 RETAMKMLKAKLLDLMMKEKKEKIEDLKGEHREAAWGNQIRSYVFQPYTLVKDHRTNYEV 303
Query: 302 PDFNSVLDGNIKPFIEAHINSR 323
+ +V+DG I FI A++ +
Sbjct: 304 GNVQAVMDGEIDGFINAYLKQK 325
>gi|154687644|ref|YP_001422805.1| hypothetical protein RBAM_032440 [Bacillus amyloliquefaciens FZB42]
gi|375363964|ref|YP_005132003.1| peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|385266424|ref|ZP_10044511.1| RF-1 domain-containing protein [Bacillus sp. 5B6]
gi|394991070|ref|ZP_10383878.1| hypothetical protein BB65665_01519 [Bacillus sp. 916]
gi|429506822|ref|YP_007188006.1| peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451345319|ref|YP_007443950.1| peptide chain release factor 2 [Bacillus amyloliquefaciens IT-45]
gi|452857151|ref|YP_007498834.1| Peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154353495|gb|ABS75574.1| PrfB [Bacillus amyloliquefaciens FZB42]
gi|371569958|emb|CCF06808.1| peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|385150920|gb|EIF14857.1| RF-1 domain-containing protein [Bacillus sp. 5B6]
gi|393808053|gb|EJD69364.1| hypothetical protein BB65665_01519 [Bacillus sp. 916]
gi|429488412|gb|AFZ92336.1| peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449849077|gb|AGF26069.1| peptide chain release factor 2 [Bacillus amyloliquefaciens IT-45]
gi|452081411|emb|CCP23179.1| Peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 327
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 9/325 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ V+ + + VN+ L EE ++ L + E D L + +
Sbjct: 6 FWNDQQKAQTVINEANGLKEYVNSYHQLSESHEELQMTHDLLKEEP-DQDLQQELEKELK 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++K L+++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 65 SLTKELNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D G+KS T+ + A+GYL E G H L+ F + H + ++C +V+
Sbjct: 125 TLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F E D+ I ED+ + + G+ + A I H+PT + V ER+
Sbjct: 184 PEFNE-EIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTERSQIK 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LKAKL E+ + + I+ E W + R YV HPY +V+D +T +
Sbjct: 243 NRDRAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNTE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG+I FI+A++ S+ S
Sbjct: 303 MGNVQAVMDGDIDIFIDAYLRSKLS 327
>gi|385260629|ref|ZP_10038772.1| peptide chain release factor 2 [Streptococcus sp. SK140]
gi|385190872|gb|EIF38300.1| peptide chain release factor 2 [Streptococcus sp. SK140]
Length = 329
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 170/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ AE L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDDAE--ILLDFLAEDESVKDELVEKL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD +++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -AELD--QMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + ++ I ++D+ F S G+ + + HIPTGI V S +R
Sbjct: 182 VEVMPE-LDDTIEVDIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K + W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDALKGDKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|295115079|emb|CBL35926.1| bacterial peptide chain release factor 2 (bRF-2)
[butyrate-producing bacterium SM4/1]
Length = 333
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 156/322 (48%), Gaps = 13/322 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP S ++ + + V + + L + E+ +++ ++ E D L
Sbjct: 6 FWDDPEMSTRLMREAKNLKDTVESYRKLEQEYEDIQVMLEMG-YEENDPSLIPEIQGMMD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D + L+ + LL G D A + + AG+ G W L MY RWADK+G+
Sbjct: 65 DFVEKLEAIRIQTLLSGEYDNNNAILKLNAGAGGTEACDWCSMLYRMYQRWADKKGFTTA 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KS T++ E A+G+L E G H L+ N + + + DV+P
Sbjct: 125 VIDYLDGEEAGIKSITLQINGENAYGFLKSERGVHRLVRISPFNSAGKRQTSFVSCDVMP 184
Query: 185 -----LFLETSPD-LQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
L +E +PD L+I + S G+ + A I H+PTGI VQ ER+
Sbjct: 185 DIKEDLDVEVNPDELRID----TYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQ 240
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
F NK A+ LK KL ++ E+ +S I+ + + + R YV PY LV+D +TG
Sbjct: 241 FQNKEVAMQMLKTKLYMMKQEEHAEKLSDIRGDVKDINFGNQIRSYVMQPYTLVKDHRTG 300
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
+ + N+VLDG+I FI A++
Sbjct: 301 AESGNVNAVLDGDIDLFISAYL 322
>gi|153932889|ref|YP_001382578.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC
19397]
gi|153936079|ref|YP_001386131.1| peptide chain release factor 2 [Clostridium botulinum A str. Hall]
gi|152928933|gb|ABS34433.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC
19397]
gi|152931993|gb|ABS37492.1| peptide chain release factor 2 [Clostridium botulinum A str. Hall]
Length = 325
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 163/328 (49%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++V+P L +++I EDL + + G+ + + A I H+PTGI VQ
Sbjct: 175 SFASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYL 321
>gi|118580454|ref|YP_901704.1| peptide chain release factor 2 [Pelobacter propionicus DSM 2379]
gi|118503164|gb|ABK99646.1| bacterial peptide chain release factor 2 (bRF-2) [Pelobacter
propionicus DSM 2379]
Length = 361
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 163/330 (49%), Gaps = 8/330 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+ S +L + K+V L + E+ +++ +L E EA + L K +
Sbjct: 32 GFWDNADSSQGILKERTSLEKIVQLWDSLVRQQEDVRVMIELGEEEADEETL-KEVGEMN 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + ++ E ++L G +D ++I G+ G + WAE LL MY+R+ +K+G++
Sbjct: 91 NRLQQGVEAAEFQRMLSGEHDRNSCFISINPGAGGTESQDWAEMLLRMYLRYCEKKGWKT 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+ D G+KSAT EYA+GYL E G H L+ F + + H + A V
Sbjct: 151 SITDYQSGDEAGIKSATFSVSGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVYA 209
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P E D++I+D DL F S G+ + A I H+PT I V ER+
Sbjct: 210 FPEIEEEDIDIKIADSDLRVDTFRSGGAGGQHVNTTDSAVRITHLPTNIVVACQSERSQI 269
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ L+AKL ++ + S I E W + R YV HPYK+V+D++TG+
Sbjct: 270 LNRATAMKVLRAKLYEKEVQERTARASEIASEKKEIGWGSQIRSYVLHPYKMVKDLRTGV 329
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++VLDG ++ F+ A++ R D
Sbjct: 330 ESGNPDAVLDGALEEFVVAYLMGVRRQAGD 359
>gi|310644311|ref|YP_003949070.1| protein chain release factor b [Paenibacillus polymyxa SC2]
gi|309249262|gb|ADO58829.1| Protein chain release factor B-like protein [Paenibacillus polymyxa
SC2]
Length = 339
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 9/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ V+ ++ V++ + LR + E+A ++ +LAE E D L +
Sbjct: 13 DFWDDNEKAQGVIAEMNVVKSSVDSYEQLRQEYEDAGMMVELAEEEG-DEALVGEVENSI 71
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L+++E+ LL P D A + + G+ G + W + LL MY RW +K G++
Sbjct: 72 KSLLSKLEEFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRMYTRWGEKRGFKV 131
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D G+KS T+ + A+GYL E G H L+ F + H + ++C DV
Sbjct: 132 ETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 190
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP + D++I EDL + + G+ + A I H+PTGI V ER+
Sbjct: 191 VPEIAD-DVDIEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGIVVTCQNERSQI 249
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ L++KL E+ + I+ E W + R YV HPY +V+D +T +
Sbjct: 250 KNRERAMTMLRSKLYERKIEEQQQQLDEIRGEQSDIAWGSQIRSYVFHPYSMVKDHRTSV 309
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
+ + +V+DG++ PFI+ ++ S+
Sbjct: 310 ETGNVGAVMDGDLDPFIDGYLRSQ 333
>gi|254820379|ref|ZP_05225380.1| peptide chain release factor 2 [Mycobacterium intracellulare ATCC
13950]
gi|379748574|ref|YP_005339395.1| peptide chain release factor 2 [Mycobacterium intracellulare ATCC
13950]
gi|379755870|ref|YP_005344542.1| peptide chain release factor 2 [Mycobacterium intracellulare
MOTT-02]
gi|379763410|ref|YP_005349807.1| peptide chain release factor 2 [Mycobacterium intracellulare
MOTT-64]
gi|378800938|gb|AFC45074.1| peptide chain release factor 2 [Mycobacterium intracellulare ATCC
13950]
gi|378806086|gb|AFC50221.1| peptide chain release factor 2 [Mycobacterium intracellulare
MOTT-02]
gi|378811352|gb|AFC55486.1| peptide chain release factor 2 [Mycobacterium intracellulare
MOTT-64]
Length = 370
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 173/335 (51%), Gaps = 22/335 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------AQLAEMEAIDYGLF 58
LWDD T++ V +L+ + + +++LR + ++ ++ + A +
Sbjct: 43 QLWDDQTRAQRVTSELSHAQGELRRIEELRGRLDDLPVLYELAAEEGEGAAEALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A +A ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALQAEIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y + D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVELFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTC 274
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK+ A+ L+AKLL + + + +K E + W + R YV HPY++V
Sbjct: 275 QNEKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLHPYQMV 333
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D++T ++ + +VLDG+I F+EA I R D
Sbjct: 334 KDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 368
>gi|229020397|ref|ZP_04177152.1| Peptide chain release factor 2 [Bacillus cereus AH1273]
gi|229026626|ref|ZP_04182968.1| Peptide chain release factor 2 [Bacillus cereus AH1272]
gi|423388555|ref|ZP_17365781.1| peptide chain release factor 2 [Bacillus cereus BAG1X1-3]
gi|423416927|ref|ZP_17394016.1| peptide chain release factor 2 [Bacillus cereus BAG3X2-1]
gi|228734659|gb|EEL85311.1| Peptide chain release factor 2 [Bacillus cereus AH1272]
gi|228740876|gb|EEL91119.1| Peptide chain release factor 2 [Bacillus cereus AH1273]
gi|401108345|gb|EJQ16276.1| peptide chain release factor 2 [Bacillus cereus BAG3X2-1]
gi|401642630|gb|EJS60336.1| peptide chain release factor 2 [Bacillus cereus BAG1X1-3]
Length = 326
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 159/324 (49%), Gaps = 11/324 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + + ++ A++LK +V + + L E ++ +L + E D L +
Sbjct: 6 FWDDQ-QGAQTVINEANALKDMVGSFRQLDETFENLEMTHELLK-EEYDEDLHEELESEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++YE+ LL P D A + + G+ G + W LL MY RWA+K G++
Sbjct: 64 KTLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP F ++++ EDL + + G+ + A I H PT V ER+
Sbjct: 183 VPEF-NDEVEIEVRTEDLKIDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LKAKL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 242 KNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNT 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I PFI+A++ SR
Sbjct: 302 EVGNVQAVMDGEIDPFIDAYLRSR 325
>gi|153938890|ref|YP_001389537.1| peptide chain release factor 2 [Clostridium botulinum F str.
Langeland]
gi|384460618|ref|YP_005673213.1| peptide chain release factor 2 [Clostridium botulinum F str.
230613]
gi|152934786|gb|ABS40284.1| peptide chain release factor 2 [Clostridium botulinum F str.
Langeland]
gi|295317635|gb|ADF98012.1| peptide chain release factor 2 [Clostridium botulinum F str.
230613]
Length = 325
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 163/328 (49%), Gaps = 16/328 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A ++++P L +++I EDL + + G+ + + A I H+PTGI VQ
Sbjct: 175 SFASIEILPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQC 233
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
ER+ NK A+ LK+KL+ + + + E W + R YV HPY LV
Sbjct: 234 QNERSQHTNKETAMKVLKSKLVELKERSHKERIEDLTGELKDMGWGSQIRSYVFHPYNLV 293
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+D +TG + + +SV++G+I FI ++
Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYL 321
>gi|418104802|ref|ZP_12741862.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44500]
gi|418175558|ref|ZP_12812156.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41437]
gi|421226927|ref|ZP_15683641.1| peptide chain release factor 2 [Streptococcus pneumoniae 2072047]
gi|421235912|ref|ZP_15692513.1| peptide chain release factor 2 [Streptococcus pneumoniae 2071004]
gi|353779236|gb|EHD59702.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44500]
gi|353844118|gb|EHE24162.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41437]
gi|395597997|gb|EJG58203.1| peptide chain release factor 2 [Streptococcus pneumoniae 2072047]
gi|395604831|gb|EJG64963.1| peptide chain release factor 2 [Streptococcus pneumoniae 2071004]
Length = 293
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 147/290 (50%), Gaps = 26/290 (8%)
Query: 42 KLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGI 101
+L+AQLAE++ K++ YEM+ LL P D A + I GS G
Sbjct: 24 ELVAQLAELD------------------KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGT 65
Query: 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161
+ W + LL MY R+ + +G++ V+D G+KS T+ FE A+G L E G H
Sbjct: 66 EAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVH 125
Query: 162 CLIN---FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIA 215
L+ F + H + V+V+P L+ + +++I ++D+ F S G+ +
Sbjct: 126 RLVRISPFDSAKRRH-TSFTSVEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKV 183
Query: 216 KPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN 275
+ HIPTGI VQS +R + N+ +A+ L+AKL + E+ + V +K E
Sbjct: 184 STGVRLTHIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEI 243
Query: 276 IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
W + R YV PY +V+D +T ++ + V+DG++ FI+A++ R S
Sbjct: 244 TWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWRIS 293
>gi|366164665|ref|ZP_09464420.1| peptide chain release factor 2 [Acetivibrio cellulolyticus CD2]
Length = 340
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 160/322 (49%), Gaps = 11/322 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D S +VL K+ + + L + E+AK + +L +E D +F +
Sbjct: 16 DFWNDIENSQKVLQKIKTMKEKLERYNRLTQEWEDAKTLCELG-LEEDDESVFTEVEDSF 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K ++ + LL GP D A +T+ AG+ G + W + LL M+ RW + +G+
Sbjct: 75 KKFKKDFEELRLETLLIGPYDKNNAILTLHAGAGGTEAQDWVQMLLRMFTRWGESKGFTV 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
R++D + G+KS TI E A+GYL E G H L+ + S + A DV+
Sbjct: 135 RILDYLDGEEAGIKSVTINVIGENAYGYLKSEKGVHRLVRISPFDASGRRHTSFASCDVM 194
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
P E S D++ I+ +DL + + G+ + + A I HIPTG+ V ER+
Sbjct: 195 P---ELSDDVEVNINPDDLRIDTYRASGAGGQHINKTESAIRITHIPTGVVVACQTERSQ 251
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
F NK A+ LK+KLL I + + +K + W + R YV PY LV+D +T
Sbjct: 252 FQNKDTAMRMLKSKLLEIKEREQKEKIEDLKGIQMDIAWGSQIRSYVFCPYTLVKDHRTN 311
Query: 299 IQLPDFNSVLDGNIKPFIEAHI 320
+ + ++V+DG++ FI +++
Sbjct: 312 YEQINVDNVMDGDLDGFINSYL 333
>gi|183603122|ref|ZP_02712622.2| peptide chain release factor 2 [Streptococcus pneumoniae SP195]
gi|183573173|gb|EDT93701.1| peptide chain release factor 2 [Streptococcus pneumoniae SP195]
Length = 329
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 170/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K ++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 9 DFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 64
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 65 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + +IPTGI VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSYEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|148992417|ref|ZP_01822112.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
gi|417678740|ref|ZP_12328137.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17570]
gi|418233946|ref|ZP_12860526.1| peptide chain release factor 2 [Streptococcus pneumoniae GA08780]
gi|419507820|ref|ZP_14047474.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49542]
gi|421219939|ref|ZP_15676794.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070425]
gi|421222270|ref|ZP_15679064.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070531]
gi|421278520|ref|ZP_15729330.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17301]
gi|421293665|ref|ZP_15744389.1| peptide chain release factor 2 [Streptococcus pneumoniae GA56113]
gi|147928734|gb|EDK79747.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
gi|332073119|gb|EGI83598.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17570]
gi|353889385|gb|EHE69156.1| peptide chain release factor 2 [Streptococcus pneumoniae GA08780]
gi|379612665|gb|EHZ77382.1| peptide chain release factor 2 [Streptococcus pneumoniae GA49542]
gi|395589594|gb|EJG49912.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070531]
gi|395590014|gb|EJG50329.1| peptide chain release factor 2 [Streptococcus pneumoniae 2070425]
gi|395881892|gb|EJG92940.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17301]
gi|395894997|gb|EJH05973.1| peptide chain release factor 2 [Streptococcus pneumoniae GA56113]
Length = 325
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 170/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K ++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVHDELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + +IPTGI VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSYEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|387877230|ref|YP_006307534.1| peptide chain release factor 2 [Mycobacterium sp. MOTT36Y]
gi|406032124|ref|YP_006731016.1| peptide chain release factor 2 [Mycobacterium indicus pranii MTCC
9506]
gi|443307029|ref|ZP_21036816.1| peptide chain release factor 2 [Mycobacterium sp. H4Y]
gi|386790688|gb|AFJ36807.1| peptide chain release factor 2 [Mycobacterium sp. MOTT36Y]
gi|405130671|gb|AFS15926.1| Peptide chain release factor 2 [Mycobacterium indicus pranii MTCC
9506]
gi|442764397|gb|ELR82395.1| peptide chain release factor 2 [Mycobacterium sp. H4Y]
Length = 370
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 173/335 (51%), Gaps = 22/335 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------AQLAEMEAIDYGLF 58
LWDD T++ V +L+ + + +++LR + ++ ++ + A +
Sbjct: 43 QLWDDQTRAQRVTSELSHAQGELRRIEELRGRLDDLPVLYELAAEEGEGAAEALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A +A ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALQAEIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y + D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVELFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQS 232
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVVTC 274
Query: 233 LGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLV 292
E++ NK+ A+ L+AKLL + + + +K E + W + R YV HPY++V
Sbjct: 275 QNEKSQLQNKISAMRVLQAKLLERKRSEERAELDALKGEGGSS-WGNQMRSYVLHPYQMV 333
Query: 293 QDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+D++T ++ + +VLDG+I F+EA I R D
Sbjct: 334 KDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRKD 368
>gi|306829186|ref|ZP_07462376.1| peptide chain release factor RF2 [Streptococcus mitis ATCC 6249]
gi|304428272|gb|EFM31362.1| peptide chain release factor RF2 [Streptococcus mitis ATCC 6249]
Length = 325
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFCKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 296
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 297 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 325
>gi|308535208|ref|YP_002137819.2| peptide chain release factor 2 [Geobacter bemidjiensis Bem]
gi|308052553|gb|ACH38023.2| peptide chain release factor 2 [Geobacter bemidjiensis Bem]
Length = 371
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 162/330 (49%), Gaps = 8/330 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK-RAYRA 64
+ W+D + +VL K V + L +A + K + +L E + L + A A
Sbjct: 43 DFWNDAENAQKVLRSRTAMEKDVTTWESLDKQARDIKELIELGSEEQDEATLAEVAAMNA 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + Q E ++L GP+D GA V+I +G+ G + WAE LL MY+R+ +K+G++
Sbjct: 103 QLETG--VSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDWAEMLLRMYLRYCEKKGWK 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D GVK T E+A+GYL E G H L+ + S + A V
Sbjct: 161 TEITDYQEGDGAGVKGVTFAVTGEFAYGYLKAEAGIHRLVRISPFDSSARRHTSFASAFV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P+ E +++I++ DL + S G+ + A I HIPTG V ER+
Sbjct: 221 FPVIEEEDIEIKIAESDLRIDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVACQSERSQH 280
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L++KL + + + S I E W + R YV HPYK+V+D++TG+
Sbjct: 281 MNKATAMKVLRSKLYEMELREREAKASDIAGEKKEIGWGSQIRSYVLHPYKMVKDLRTGV 340
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++VLDG++ F+ ++ R D
Sbjct: 341 ESGNPDAVLDGSLDDFVVPYLMGVRRETKD 370
>gi|423573165|ref|ZP_17549284.1| peptide chain release factor 2 [Bacillus cereus MSX-D12]
gi|401215563|gb|EJR22279.1| peptide chain release factor 2 [Bacillus cereus MSX-D12]
Length = 325
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 159/324 (49%), Gaps = 11/324 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + + ++ A++LK +V + + L E ++ +L + E D L +
Sbjct: 5 FWDDQ-QGAQAVINEANALKDMVGSFRQLDETFENLEITHELLK-EEYDEDLHEELESEV 62
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++YE+ LL P D A + + G+ G + W LL MY RWA+K G++
Sbjct: 63 KGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 122
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 123 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 181
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP F +++I EDL + + G+ + A I H PT V ER+
Sbjct: 182 VPEF-NDEVEIEIRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQI 240
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LKAKL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 241 KNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNT 300
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I PFI+A++ SR
Sbjct: 301 EVGNVQAVMDGEIDPFIDAYLRSR 324
>gi|262198721|ref|YP_003269930.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262082068|gb|ACY18037.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
Length = 378
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 166/321 (51%), Gaps = 7/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ + L +L VV + L K +A ++ +LAE +A D A A+
Sbjct: 55 FWDNRQKAEDSLRELKSIKDVVGSYDKLSSKLADAVVLLELAE-DAEDAESAIEARTAAE 113
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ + LD+ E ++L G D GA + I +G+ G+ WA+ LL M +R+AD +G++
Sbjct: 114 EIERSLDELEFRRMLSGEYDQGGAVLQINSGAGGVDAADWAQMLLRMILRYADHKGWKAE 173
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D+ + G+KSAT+ EYA+G L E G H L+ + + + A V V P
Sbjct: 174 VLDEQAAEEAGIKSATLVITGEYAYGLLKAEMGVHRLVRISPFDAQARRQTSFAAVTVSP 233
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
++ S + I + +L ++ + G+ + + A I H+P+GI VQ ER+ N
Sbjct: 234 -DIDDSVHVDIDEGELRIDVYRAGGAGGQHVNKTESAVRITHLPSGIVVQCQNERSQHKN 292
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
K A+ L+++L + + + + E W + R YV PY+ V D +T +++
Sbjct: 293 KASAMRVLRSRLYDYLKAERDAAAAEAAPEKKKIEWGSQIRSYVLAPYRQVTDHRTDLKV 352
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ ++VLDG++ PFI ++ S
Sbjct: 353 GNVDAVLDGDLDPFIRTYLLS 373
>gi|253580007|ref|ZP_04857274.1| peptide chain release factor 2 [Ruminococcus sp. 5_1_39B_FAA]
gi|251848526|gb|EES76489.1| peptide chain release factor 2 [Ruminococcus sp. 5_1_39BFAA]
Length = 343
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD S + + +L D + ++L + E+ + + ++ E D L
Sbjct: 19 DFWDDAEVSQKKMKELKDMKDDMETYQNLVTQMEDMETMIEMG-YEENDPALIPEIQEML 77
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K D + LL G D E A + + AG+ G W L MY RWADK+G+
Sbjct: 78 DEFQKDFDNIRIKTLLSGEYDSENAIIKLNAGAGGTEACDWCGMLYRMYSRWADKKGFTL 137
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + A+GYL E G H L+ N + + + DV+
Sbjct: 138 EVLDYLDGDEAGIKSVTFQVNGTNAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 197
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I+D+++ + S G+ + A I H PTGI VQ ER+
Sbjct: 198 P-DIKKDLDVEINDDEIRIDTYRSSGAGGQHINKTSSAIRITHYPTGIVVQCQNERSQHM 256
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKL ++ ++ +S I+ E W + R YV PY +V+D +T +
Sbjct: 257 NKDKAMQMLKAKLYLLKQQEAEEKLSGIRGEVTDIGWGNQIRSYVMQPYTMVKDHRTNEE 316
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
+ ++VLDG I FI A++
Sbjct: 317 TGNVDAVLDGGIDIFINAYL 336
>gi|47567398|ref|ZP_00238111.1| peptide chain release factor 2 [Bacillus cereus G9241]
gi|47568468|ref|ZP_00239168.1| peptide chain release factor 2 [Bacillus cereus G9241]
gi|47569292|ref|ZP_00239977.1| peptide chain release factor 2 [Bacillus cereus G9241]
gi|222098640|ref|YP_002532698.1| peptide chain release factor 2 [Bacillus cereus Q1]
gi|228936472|ref|ZP_04099270.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228988409|ref|ZP_04148500.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229141914|ref|ZP_04270440.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST26]
gi|229158750|ref|ZP_04286808.1| Peptide chain release factor 2 [Bacillus cereus ATCC 4342]
gi|375287196|ref|YP_005107635.1| peptide chain release factor 2 [Bacillus cereus NC7401]
gi|423355664|ref|ZP_17333288.1| peptide chain release factor 2 [Bacillus cereus IS075]
gi|423375271|ref|ZP_17352608.1| peptide chain release factor 2 [Bacillus cereus AND1407]
gi|423572129|ref|ZP_17548342.1| peptide chain release factor 2 [Bacillus cereus MSX-A12]
gi|47554063|gb|EAL12429.1| peptide chain release factor 2 [Bacillus cereus G9241]
gi|47554859|gb|EAL13210.1| peptide chain release factor 2 [Bacillus cereus G9241]
gi|47556019|gb|EAL14357.1| peptide chain release factor 2 [Bacillus cereus G9241]
gi|221242699|gb|ACM15409.1| peptide chain release factor [Bacillus cereus Q1]
gi|228624734|gb|EEK81503.1| Peptide chain release factor 2 [Bacillus cereus ATCC 4342]
gi|228641529|gb|EEK97834.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST26]
gi|228771265|gb|EEM19740.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228823304|gb|EEM69138.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|358355723|dbj|BAL20895.1| bacterial Peptide Chain Release Factor 2 (RF-2) [Bacillus cereus
NC7401]
gi|401082016|gb|EJP90287.1| peptide chain release factor 2 [Bacillus cereus IS075]
gi|401092690|gb|EJQ00815.1| peptide chain release factor 2 [Bacillus cereus AND1407]
gi|401198685|gb|EJR05600.1| peptide chain release factor 2 [Bacillus cereus MSX-A12]
Length = 326
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 159/324 (49%), Gaps = 11/324 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + + ++ A++LK +V + + L E ++ +L + E D L +
Sbjct: 6 FWDDQ-QGAQAVINEANALKDMVGSFRQLDETFENLEITHELLK-EEYDEDLHEELESEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++YE+ LL P D A + + G+ G + W LL MY RWA+K G++
Sbjct: 64 KGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
VP F +++I EDL + + G+ + A I H PT V ER+
Sbjct: 183 VPEF-NDEVEIEIRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ A+ LKAKL E+ + + I+ E W + R YV HPY LV+D +T
Sbjct: 242 KNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNT 301
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +V+DG I PFI+A++ SR
Sbjct: 302 EVGNVQAVMDGEIDPFIDAYLRSR 325
>gi|418112101|ref|ZP_12749104.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41538]
gi|353785750|gb|EHD66168.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41538]
Length = 279
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 147/290 (50%), Gaps = 26/290 (8%)
Query: 42 KLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGI 101
+L+AQLAE++ K++ YEM+ LL P D A + I GS G
Sbjct: 10 ELVAQLAELD------------------KIMTSYEMTLLLSEPYDHNNAILEIHPGSGGT 51
Query: 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161
+ W + LL MY R+ + +G++ V+D G+KS T+ FE A+G L E G H
Sbjct: 52 EAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVH 111
Query: 162 CLIN---FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIA 215
L+ F + H + V+V+P L+ + +++I ++D+ F S G+ +
Sbjct: 112 RLVRISPFDSAKRRH-TSFTSVEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKV 169
Query: 216 KPAACIQHIPTGIAVQSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVN 275
+ HIPTGI VQS +R + N+ +A+ L+AKL + E+ + V +K E
Sbjct: 170 STGVRLTHIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEI 229
Query: 276 IWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
W + R YV PY +V+D +T ++ + V+DG++ FI+A++ R S
Sbjct: 230 TWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWRIS 279
>gi|322374638|ref|ZP_08049152.1| peptide chain release factor 2 [Streptococcus sp. C300]
gi|321280138|gb|EFX57177.1| peptide chain release factor 2 [Streptococcus sp. C300]
Length = 329
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 168/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 ---TELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+ KL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQTKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVAQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|164687096|ref|ZP_02211124.1| hypothetical protein CLOBAR_00722 [Clostridium bartlettii DSM
16795]
gi|164603981|gb|EDQ97446.1| peptide chain release factor 2 [Clostridium bartlettii DSM 16795]
Length = 349
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 163/327 (49%), Gaps = 13/327 (3%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVV---NALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
+ + WDD K+ ++L + +D ++ L + E + E E+I++ +
Sbjct: 20 INKQDFWDDNEKAQKILQQNSDLKNIIAEFEGLNSDLEEIEILIELGLEEEDESIEHDIE 79
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K + + +D+ ++ LL G DV A ++I AG+ G+ + A+ +L MY+RWA
Sbjct: 80 KSIKK----LEDKIDEVKIKTLLNGKYDVNNAVLSINAGTGGLDAQDCAQMILRMYLRWA 135
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
D+ ++ + +D G+KS T+ + A+GYL E G H ++ + S +
Sbjct: 136 DQNNFKVKTLDMISDPEAGIKSVTLLIQGTNAYGYLKSEKGVHRIVRISPFDASGKRHTS 195
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSL 233
VDV P L+ D++I+ DL + S G+ + A I HIPTGI VQ
Sbjct: 196 FVSVDVTPE-LDDKIDVEINPNDLKIDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQ 254
Query: 234 GERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQ 293
ER+ FANK A+ LK KL+ + + + I+ + W + R YV PYKLV+
Sbjct: 255 NERSQFANKDTAMKMLKGKLIHLKELENKERIEDIQGKYSQITWGSQIRSYVFQPYKLVK 314
Query: 294 DVKTGIQLPDFNSVLDGNIKPFIEAHI 320
D +T ++ + +SV+DGNI FI ++
Sbjct: 315 DHRTNAEIGNVDSVMDGNINLFINEYL 341
>gi|257886811|ref|ZP_05666464.1| peptide chain release factor 2 [Enterococcus faecium 1,141,733]
gi|431762435|ref|ZP_19550997.1| peptide chain release factor 2 [Enterococcus faecium E3548]
gi|257822865|gb|EEV49797.1| peptide chain release factor 2 [Enterococcus faecium 1,141,733]
gi|430625127|gb|ELB61777.1| peptide chain release factor 2 [Enterococcus faecium E3548]
Length = 327
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 133/254 (52%), Gaps = 6/254 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
++ YE+S LL GP D A V + G+ G + W LL MY RWA++ GY+ +D
Sbjct: 70 MNTYELSMLLDGPYDRNNAIVELHPGAGGTESQDWGSMLLRMYTRWAEQHGYQVETLDYQ 129
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVVPLFLET 189
G+KS T+ + AFGYL E G H L+ P S T C VDV+P ET
Sbjct: 130 AGDEAGIKSVTLLIKGHNAFGYLKAEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDET 189
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
D++I+ +DL + + G+ + + A I H+PTG V S +R+ N+ +A+
Sbjct: 190 -IDIEINPDDLKIDTYRASGAGGQHINKTESAVRITHLPTGTVVASQAQRSQLKNREQAM 248
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LKAKL + E+ + ++ E W + R YV HPY +V+D +T ++ + +
Sbjct: 249 GMLKAKLYQLEVEKKEQEAAALRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNVETGNVQA 308
Query: 307 VLDGNIKPFIEAHI 320
V+DG++ FI+ ++
Sbjct: 309 VMDGDLDLFIDGYL 322
>gi|56964831|ref|YP_176562.1| peptide chain release factor 2 [Bacillus clausii KSM-K16]
gi|56911074|dbj|BAD65601.1| peptide chain release factor 2 [Bacillus clausii KSM-K16]
Length = 328
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 162/321 (50%), Gaps = 9/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ ++ + + V+ KD+ ++ ++ +L E D L
Sbjct: 5 DFWNDQEQAQAIINETNGLKEQVHTFKDMAESYDDLEVSYELVR-EEDDTELASELESGL 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + ++Q+E+ LL P D A + + G+ G + WA LL MY RWA+K G+
Sbjct: 64 AALKQKMNQFELQLLLSAPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKRGFAV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D + GVKS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ + D++++ EDL + + G+ + A I H+PT V ER+
Sbjct: 183 MPE-LDDAVDIELNSEDLKIDTYRASGAGGQHVNTTDSAVRITHLPTNTVVTCQSERSQI 241
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N+ +A+ +KAKL + E+ ++ I+ E W + R YV HPY +V+D +TG
Sbjct: 242 KNREQAMKMMKAKLYQLRIEEQERELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTGF 301
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
++ + NSV+DG I FI+A++
Sbjct: 302 EIGNTNSVMDGEIDGFIDAYL 322
>gi|313889933|ref|ZP_07823573.1| peptide chain release factor 2 [Streptococcus pseudoporcinus SPIN
20026]
gi|416851071|ref|ZP_11908412.1| peptide chain release factor 2 [Streptococcus pseudoporcinus LQ
940-04]
gi|313121699|gb|EFR44798.1| peptide chain release factor 2 [Streptococcus pseudoporcinus SPIN
20026]
gi|356740750|gb|EHI65973.1| peptide chain release factor 2 [Streptococcus pseudoporcinus LQ
940-04]
Length = 327
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 13/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D + + +L + LKV + ++ +EE +L ++ E + G + +
Sbjct: 5 DFWNDTIAAQKTSQEL-NELKVKFDTFHNMENLSEETELYMEMLEEDESVKGELEESL-- 61
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + ++L YEM+ LL P D A + I GS G + WA+ L MY R+ + +G++
Sbjct: 62 -LKLDQILAAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFK 120
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ FE A+G+L E G H L+ F + H + V+
Sbjct: 121 VETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRH-TSFTSVE 179
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P L+ + ++ I D+D+ F S G+ + + HIPTGI V S +R
Sbjct: 180 VMPE-LDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDRTQ 238
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+ N+ +A+ L+AKL + ++ V+ +K + W + R YV PY +V+D +T
Sbjct: 239 YGNRDRAMKMLQAKLYQMEQDKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTN 298
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + V+DG+I FI+A++ R + D
Sbjct: 299 FEVAQVDKVMDGDIDGFIDAYLKWRMNDD 327
>gi|12323033|gb|AAG51510.1|AC058785_13 peptide chain release factor 2, putative [Arabidopsis thaliana]
Length = 426
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 164/329 (49%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDPT + ++ + + + + E + +LA+ E D L +A
Sbjct: 97 DLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKEEN-DSELESETLKAL 155
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+D+ ++ + E+ LL ND + ++AG+ G WA ++ MY WA + +
Sbjct: 156 IDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSV 215
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ EYA+GY E G H L+ F +G H + A V V
Sbjct: 216 TVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 274
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ + S ++I+D DL F S G+ + A I HIPTGI ER+
Sbjct: 275 IPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQH 334
Query: 240 ANKMKALNRLKAKLLVI-VGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
+NK A+ L+++L + + Q N + ++ W + R YV HPY++V+D++T
Sbjct: 335 SNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEIS-WGNQIRTYVLHPYRMVKDLRTN 393
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ D +SVL+G++ FI + ++S D
Sbjct: 394 YEVSDPDSVLEGDLDGFILSFLSSSLDKD 422
>gi|306825598|ref|ZP_07458937.1| peptide chain release factor RF2 [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304431959|gb|EFM34936.1| peptide chain release factor RF2 [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 329
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 17/329 (5%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVE--ILLDFLAEDESVHDELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 ---TELDKMMANYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLFFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P L+ + +++I ++D+ F S G+ + + HIPTG VQS +R
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 240
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ +A+ L+AKL + E+ + V +K E W + R YV PY +V+D +
Sbjct: 241 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHR 300
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRS 325
T ++ + V+DG++ FI+A++ R S
Sbjct: 301 TSFEVSQVDKVMDGDLDGFIDAYLKWRIS 329
>gi|431752329|ref|ZP_19541012.1| peptide chain release factor 2 [Enterococcus faecium E2620]
gi|430613820|gb|ELB50819.1| peptide chain release factor 2 [Enterococcus faecium E2620]
Length = 327
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 133/254 (52%), Gaps = 6/254 (2%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
++ YE+S LL GP D A V + G+ G + W LL MY RWA++ GY+ +D
Sbjct: 70 MNTYELSMLLDGPYDRNNAIVELHPGAGGTESQDWGSMLLRMYTRWAEQHGYQVETLDYQ 129
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVVPLFLET 189
G+KS T+ + AFGYL E G H L+ P S T C VDV+P ET
Sbjct: 130 AGDEAGIKSVTLLIKGHNAFGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDET 189
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFANKMKAL 246
D++I+ +DL + + G+ + + A I H+PTG V S +R+ N+ +A+
Sbjct: 190 -IDIEINPDDLKIDTYRASGAGGQHINKTESAVRITHLPTGTVVASQAQRSQLKNREQAM 248
Query: 247 NRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNS 306
LKAKL + E+ + ++ E W + R YV HPY +V+D +T ++ + +
Sbjct: 249 GMLKAKLYQLEVEKKEQEAAALRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNVETGNVQA 308
Query: 307 VLDGNIKPFIEAHI 320
V+DG++ FI+ ++
Sbjct: 309 VMDGDLDLFIDGYL 322
>gi|397670209|ref|YP_006511744.1| peptide chain release factor 2 [Propionibacterium propionicum
F0230a]
gi|395141892|gb|AFN45999.1| peptide chain release factor 2 [Propionibacterium propionicum
F0230a]
Length = 371
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 170/326 (52%), Gaps = 8/326 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + V L+ V L LR + ++A ++ +LA +E D
Sbjct: 44 DLWNDQENAQRVTSTLSARQAEVERLDGLRGRLDDAAVMLELA-VEENDAEARTEVENEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ LL G D A +TI+A + G+ +AE+L+ MY+RWA++ GY
Sbjct: 103 NRLAREIEALEVRTLLSGEYDSREALITIRAEAGGVDAADFAEKLMRMYLRWAERHGYAV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYDTSYAEEAGLKSATFAVKAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + D+ +F S G+ + A I H+PTG+ V E++
Sbjct: 223 PVTEETD-HIDIPESDIRVDVFRSSGPGGQSVNTTDSAVRITHLPTGVVVSCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+++LL + ++ ++ +K + N W + R YV +PY++V+D++T +
Sbjct: 282 NKAAALRVLQSRLLELARQEREKEMNALKGDG-GNSWGAQMRSYVMNPYQMVKDLRTEYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSS 326
+ + ++V DG++ FI+A I R+ S
Sbjct: 341 VGNPDAVFDGDLDGFIDAGIRWRKKS 366
>gi|384267063|ref|YP_005422770.1| peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387900157|ref|YP_006330453.1| Peptide chain release factor [Bacillus amyloliquefaciens Y2]
gi|380500416|emb|CCG51454.1| peptide chain release factor 2 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387174267|gb|AFJ63728.1| Peptide chain release factor [Bacillus amyloliquefaciens Y2]
Length = 327
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 9/325 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ V+ + + VN+ L EE ++ L + E D L + +
Sbjct: 6 FWNDQQKAQTVINEANGLKEYVNSYHQLSESHEELQMTHDLLK-EDPDQDLQQELEKELK 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++K L+++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 65 SLTKELNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERHGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D G+KS T+ + A+GYL E G H L+ F + H + ++C +V+
Sbjct: 125 TLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P F E D+ I ED+ + + G+ + A I H+PT + V ER+
Sbjct: 184 PEFNE-EIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTERSQIK 242
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ +A+ LKAKL E+ + + I+ E W + R YV HPY +V+D +T +
Sbjct: 243 NRDRAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNTE 302
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRS 325
+ + +V+DG+I FI+A++ S+ S
Sbjct: 303 MGNVQAVMDGDIDIFIDAYLRSKLS 327
>gi|418068673|ref|ZP_12705955.1| peptide chain release factor 2 [Pediococcus acidilactici MA18/5M]
gi|357539409|gb|EHJ23428.1| peptide chain release factor 2 [Pediococcus acidilactici MA18/5M]
Length = 343
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 158/321 (49%), Gaps = 9/321 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K+ +++ + + K+L E ++ +L EMEA D +
Sbjct: 16 DFWNDQEKAQKIINETNVLKAKYDNFKNLTDHVENLEVTLELLEMEA-DPDVQAEFEDEL 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+KLL Y + LL G D A + I G+ G + W LL MY RWA++ ++
Sbjct: 75 SQTAKLLRDYRLGLLLNGKYDANNAILEIHPGAGGTESQDWGSMLLRMYTRWAEQHQFKV 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+V D + G+ S TI A+GYL E G H L+ F + H + A VDV
Sbjct: 135 QVEDYQAGEVAGISSVTIRVMGHNAYGYLRSEKGVHRLVRLSPFDSAGRRH-TSFASVDV 193
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P L+ S ++ I+ +DL ++ S G+ + A I H+PTGI V S ER+
Sbjct: 194 MPE-LDDSVEVNINPDDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVVASQAERSQL 252
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
N++ A+N LKAKL + ++ + ++ + W + R YV HPY +V+D +T +
Sbjct: 253 QNRVTAMNMLKAKLFELEEQKKAEEKAKLEGTQLEIGWGSQIRSYVFHPYSMVKDHRTNL 312
Query: 300 QLPDFNSVLDGNIKPFIEAHI 320
+ + V+DG++ FI A++
Sbjct: 313 ETANVQGVMDGDLDDFINAYL 333
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,066,520,526
Number of Sequences: 23463169
Number of extensions: 207462925
Number of successful extensions: 475827
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6993
Number of HSP's successfully gapped in prelim test: 755
Number of HSP's that attempted gapping in prelim test: 457470
Number of HSP's gapped (non-prelim): 7838
length of query: 329
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 187
effective length of database: 9,027,425,369
effective search space: 1688128544003
effective search space used: 1688128544003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)