BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020243
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74476|RF2_SYNY3 Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=prfB PE=3 SV=2
Length = 372
Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 184/320 (57%), Gaps = 6/320 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ ++L L ++ + + + ++++ I +L E+E D L A
Sbjct: 46 DFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED-DQALLTEAETTL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD++E+ +LL GP D +GA++TI AG+ G + WAE LL MY RW++K+GY+
Sbjct: 105 EQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS T+E E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 165 HLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTSFAGVEVM 224
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVQSLGERNHFA 240
PL E + L I D+DL S+ G+ Q++ K A I H+PTG+AV+ ER+
Sbjct: 225 PLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCTQERSQLQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+++ EQ ++ I+ + + W + R YV HPY+LV+D++T ++
Sbjct: 285 NKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQLVKDLRTNVE 344
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D V+DG + FIEA++
Sbjct: 345 TTDVGGVMDGELSDFIEAYL 364
>sp|Q7U3W6|RF2_SYNPX Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102)
GN=prfB PE=3 SV=1
Length = 374
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 175/320 (54%), Gaps = 7/320 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L D ++AK +L E+E D + A
Sbjct: 44 DFWDDQQAAQKQMRRLDEVKAQLQQLADWGGAVDDAKATLELYELEP-DEEMLTEAQEGL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA +TI AG+ G + WA+ LL MY RWA+ G +
Sbjct: 103 NQLRQGLDRWELERLLSGDYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 163 TVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D+ I ++DL + S G+ + + A I HIPTG+AV+ ER+
Sbjct: 223 P-KIDEEVDIDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KA+ LKAKLLVI EQ + ++ I+ + + W + R YV HPY++V+D++T +
Sbjct: 282 NKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTSEE 341
Query: 301 LPDFNSVLDGNIKPFIEAHI 320
D +V+DG + PFI+A +
Sbjct: 342 TNDVQAVMDGALDPFIDASL 361
>sp|B9L0E3|RF2_THERP Peptide chain release factor 2 OS=Thermomicrobium roseum (strain
ATCC 27502 / DSM 5159 / P-2) GN=prfB PE=3 SV=1
Length = 374
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 176/323 (54%), Gaps = 9/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW DP ++ +L +L+ +V + L +++A+ + +L + + D L + + +
Sbjct: 43 DLWQDPQRAQSLLRRLSQLRDLVQEWETL---SQQARDLLELRALASDDLELAGQVEQEA 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++++ + Q E+ LL G D A + + AG+ G+ + WAE LL MY+RWA + G+
Sbjct: 100 TELAERVRQLELRLLLTGQYDGHDAILAVHAGTGGVDAQDWAEMLLRMYLRWAQRAGFAA 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VVD + G+KSAT+E YA+GYL GE G H L+ + + + A V+V+
Sbjct: 160 EVVDLLEGEEAGIKSATVEVRGPYAYGYLKGEAGTHRLVRLSPFDAAHRRHTSFALVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E D++I +ED+ F + G+ + + A I H+PTGI V ER+
Sbjct: 220 PL-VEEDDDVEIREEDIRIDTFRASGHGGQHVNKTESAVRITHLPTGIVVTCQNERSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ LKA+LL + Q + +K + +V W R YV HPY +V D +T +
Sbjct: 279 NRETAMKILKARLLELKIRQRQEEQARLKGKPVVTGWGNRIRSYVLHPYTMVTDHRTEVS 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
P+ +VL+G I PFIEA+++ +
Sbjct: 339 TPNIQAVLEGEIDPFIEAYLHQQ 361
>sp|B7K0A6|RF2_CYAP8 Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801)
GN=prfB PE=3 SV=1
Length = 365
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 180/322 (55%), Gaps = 6/322 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D V + E+ K IA+L E+E D L + A
Sbjct: 44 DFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE-DATLNEEAEANL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +++GY+
Sbjct: 103 TQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A ++V+
Sbjct: 163 HLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGER-QSIAKPAACIQ--HIPTGIAVQSLGERNHFA 240
P E ++I ++DL ++ G+ Q++ K ++ H+PTGIAV+ ER+
Sbjct: 223 PALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQ 282
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK KAL LKAKLL+I EQ ++ I+ + + W + R YV HPY++V+DV+T +
Sbjct: 283 NKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDVRTNTE 342
Query: 301 LPDFNSVLDGNIKPFIEAHINS 322
D N V+DG + FIE+++ S
Sbjct: 343 TTDVNGVMDGKLDLFIESYLRS 364
>sp|A4F8R2|RF2_SACEN Peptide chain release factor 2 OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=prfB PE=3 SV=1
Length = 367
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 172/327 (52%), Gaps = 9/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L + +KDLR + E+ +++ +L+E E D GL + A
Sbjct: 43 DLWDDVEHAQRVSSQLVHRQSELRKIKDLRQRVEDLEVLYELSEDEGDDSGLAE-ADSER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ E+ LL G D A VTI+A + G+ +AE L+ MYVRWA++ Y
Sbjct: 102 TKLKKDLEALEVRTLLSGDYDQREAVVTIRAEAGGVDAADFAEMLMRMYVRWAERHEYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET ++I ++D+ +F S G+ + A I HIPTGI V E++
Sbjct: 222 PVVEETDH-VEIPEKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVVSCQNEKSQLQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L++KLL EQ + + +K + W + R YV HPY++V+D++T +
Sbjct: 281 NKAAALRVLQSKLLAKKKEQERAELDALKDSG--SSWGNQMRSYVLHPYQMVKDLRTEFE 338
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + ++VLDG I F+EA I RR D
Sbjct: 339 VGNPDAVLDGQIDGFLEAGIRWRRQQD 365
>sp|C5BYB6|RF2_BEUC1 Peptide chain release factor 2 OS=Beutenbergia cavernae (strain
ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=prfB PE=3 SV=1
Length = 374
Score = 171 bits (433), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 176/331 (53%), Gaps = 14/331 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + ++ + + QLA E D A
Sbjct: 43 DLWDDPDAAQKVTSRLSHTQSELERLDTLRSRIDDLETLVQLA-AEEDDADTLAEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+++GY
Sbjct: 102 TKIRTSMGELEVRTLLAGEYDSREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERKGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 162 QVLDTSYAEEAGLKSATFEVKVPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I + D+ +F S G+ + A I H+PTGI V E++
Sbjct: 222 PL-IEQTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSMQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNI---WQRETRRYVSHPYKLVQDVKT 297
N+ A+ L+++LL+ + E+ + K+E ++ W + R YV PY++V+D++T
Sbjct: 281 NRAAAMRVLQSRLLLAMQEEE----NAKKKELAGDVKASWGDQMRSYVLQPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++ + ++V DG+I FIEA I RR T
Sbjct: 337 EHEVGNPSAVFDGDIDDFIEAGIRWRRQQQT 367
>sp|A4X3K6|RF2_SALTO Peptide chain release factor 2 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=prfB PE=3 SV=1
Length = 373
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 173/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ +N L +LR + ++AK++ +LAE E+ D G
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEINKLAELRSRLDDAKVLLELAEAES-DPGALTEVEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AGLAKAIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ F S G+ + A I HIPTGI V E++
Sbjct: 223 PV-VEQTDHIDIPENEMRFDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ + + +K +A W + R YV HPY++V+D++T +
Sbjct: 282 NKASALRVLQARLLERKRQEEQAKLQGLKTDA-AGSWGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+V DG + FIEA I R+
Sbjct: 341 TGTPAAVFDGELDAFIEAGIRWRK 364
>sp|A8M3R1|RF2_SALAI Peptide chain release factor 2 OS=Salinispora arenicola (strain
CNS-205) GN=prfB PE=3 SV=1
Length = 373
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 174/324 (53%), Gaps = 8/324 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ + L DLR + ++ +++ +LAE E+ D G+
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEITKLTDLRSRLDDTQVLLELAEAES-DPGVLTEVAAEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLAKSIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + + I + ++ ++ S G+ + A I HIPTGI V E++
Sbjct: 223 PV-VEQTDHIDIPENEMRTDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVTCQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+A+LL ++ + + +K +A W + R YV HPY++V+D++T +
Sbjct: 282 NKASALRVLQARLLERKRQEEQAKLQGLKTDA-AGSWGDQMRSYVLHPYQMVKDLRTEQE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRR 324
+SV DG + FIEA I R+
Sbjct: 341 TGSPSSVFDGELDAFIEAGIRWRK 364
>sp|Q1BBL5|RF2_MYCSS Peptide chain release factor 2 OS=Mycobacterium sp. (strain MCS)
GN=prfB PE=3 SV=1
Length = 371
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 181/334 (54%), Gaps = 15/334 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V E
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKVAAMRVLQAKLLARKKQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+T ++ + ++VLDG+I F+EA I R D D
Sbjct: 338 RTEYEVGNPSAVLDGDIDGFLEAGIRWRNRRDDD 371
>sp|A1UDD2|RF2_MYCSK Peptide chain release factor 2 OS=Mycobacterium sp. (strain KMS)
GN=prfB PE=3 SV=1
Length = 371
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 181/334 (54%), Gaps = 15/334 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V E
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKVAAMRVLQAKLLARKKQEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+T ++ + ++VLDG+I F+EA I R D D
Sbjct: 338 RTEYEVGNPSAVLDGDIDGFLEAGIRWRNRRDDD 371
>sp|A9WPT6|RF2_RENSM Peptide chain release factor 2 OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=prfB PE=3 SV=1
Length = 374
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 176/323 (54%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ +V KL+ + + L+ L + ++ +++ +LAE E D A +
Sbjct: 47 DLWDNPAEAQKVTSKLSHAQSKLERLETLTARIDDLEVLVELAESEH-DEDSLAEASKEL 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 106 VSLQKSLQELEVVTLLAGEYDEREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYPT 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 166 SVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + ++I D D+ +F S G+ + A + H+PTG V E++
Sbjct: 226 PL-IEQTDSIEIPDNDIRVDVFRSSGPGGQSVNTTDSAVRLTHLPTGTVVSMQNEKSQLQ 284
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A L+++LL++ +Q + + + + W + R YV +PY++V+D++T +
Sbjct: 285 NRAAATRVLQSRLLLLKKQQEDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 343
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + + VLDG+I FI+A I R
Sbjct: 344 VGNTSGVLDGDIDDFIDAGIRWR 366
>sp|A3PWV0|RF2_MYCSJ Peptide chain release factor 2 OS=Mycobacterium sp. (strain JLS)
GN=prfB PE=3 SV=1
Length = 371
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 181/334 (54%), Gaps = 15/334 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V E
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNE 278
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
++ NK+ A+ L+AKLL ++ + + +K + + W + R YV HPY++V+D+
Sbjct: 279 KSQLQNKVAAMRVLQAKLLARKKQEERAALDALKGDGGSS-WGNQMRSYVLHPYQMVKDL 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+T ++ + ++VLDG+I F+EA I R D D
Sbjct: 338 RTEYEVGNPSAVLDGDIDGFLEAGIRWRNRRDDD 371
>sp|Q8NS78|RF2_CORGL Peptide chain release factor 2 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=prfB PE=3 SV=1
Length = 368
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + I D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLERKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNFE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 338 VNDPQKVLDGDIDGLLEAGIRWR 360
>sp|A4QCD3|RF2_CORGB Peptide chain release factor 2 OS=Corynebacterium glutamicum
(strain R) GN=prfB PE=3 SV=1
Length = 368
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + I D D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 278
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 279 NKASAMRVLQAKLLERKRQEERAEMDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNFE 337
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D VLDG+I +EA I R
Sbjct: 338 VNDPQKVLDGDIDGLLEAGIRWR 360
>sp|C0ZXD0|RF2_RHOE4 Peptide chain release factor 2 OS=Rhodococcus erythropolis (strain
PR4 / NBRC 100887) GN=prfB PE=3 SV=1
Length = 368
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 179/328 (54%), Gaps = 13/328 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ + + + LR + +E ++ +LAE E D A RASL
Sbjct: 44 LWNDQEHAQQVTSQLSHAQAELRRIVALRERLDEMPILYELAEDEGPDAVADADAERASL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A + I++G+ GI WAE L+ MY+RWA+K Y
Sbjct: 104 RDDIAAM----EVKTMLSGEYDERDALINIRSGAGGIDAADWAEMLMRMYIRWAEKHDYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y +G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGLKSATFAIKGPYTYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ ++I++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIEINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K ++ + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLAVKRQEERAEMDALKGDSGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + ++VLDG+I F+EA I R S +
Sbjct: 338 EVNNPSAVLDGDIDGFLEAGIRWRMSEN 365
>sp|C1B1L3|RF2_RHOOB Peptide chain release factor 2 OS=Rhodococcus opacus (strain B4)
GN=prfB PE=3 SV=1
Length = 368
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 178/324 (54%), Gaps = 13/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGAEAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYIRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + +SVLDG+I F+E+ I R
Sbjct: 338 EVNNPSSVLDGDIDGFLESGIRWR 361
>sp|A0QU58|RF2_MYCS2 Peptide chain release factor 2 OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=prfB PE=1 SV=1
Length = 368
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 178/333 (53%), Gaps = 16/333 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V L+ + + ++ LR + ++ ++ +LA + G A
Sbjct: 43 NLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYELA----AEAGGPDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELAKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y + D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P+ +ET+ ++I + D+ ++ S G+ + A + HIPTGI V E+
Sbjct: 218 VEVLPV-VETTDHIEIPENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEK 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++
Sbjct: 277 SQLQNKVSAMRVLQAKLLERKRLEERAELDALKGDGGSS-WGNQMRSYVLHPYQMVKDLR 335
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
T ++ + SVLDG+I F+EA I R D D
Sbjct: 336 TEYEVGNPASVLDGDIDGFLEAGIRWRNRKDDD 368
>sp|Q0TNE1|RF2_CLOP1 Peptide chain release factor 2 OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2
Length = 362
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 45 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 103 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 163 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 223 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 281
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 282 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 341
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+DG+I FI A++NS
Sbjct: 342 SNVNGVMDGDIDNFIIAYLNS 362
>sp|Q0S2Q6|RF2_RHOSR Peptide chain release factor 2 OS=Rhodococcus sp. (strain RHA1)
GN=prfB PE=3 SV=1
Length = 368
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 178/324 (54%), Gaps = 13/324 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E D A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGADAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 278
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+AKLL + ++ + + +K + + W + R YV HPY++V+D++T
Sbjct: 279 QNKVSAMRVLQAKLLEVKRKEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRTEY 337
Query: 300 QLPDFNSVLDGNIKPFIEAHINSR 323
++ + ++VLDG+I F+E+ I R
Sbjct: 338 EVNNPSAVLDGDIDGFLESGIRWR 361
>sp|Q4L4H9|RF2_STAHJ Peptide chain release factor 2 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=prfB PE=3 SV=2
Length = 371
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 6/325 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WDD K+ +V+ K VVN +L + E+ +L + E +D +
Sbjct: 39 MMTEPDFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQ-EELDGDVKSD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LD + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 98 LEQNVLDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 QGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 218 SCDVIPEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LKAKL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKAKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHI 320
+T + ++V+DG I PFIE+++
Sbjct: 338 RTNEETGKVDAVMDGEIGPFIESYL 362
>sp|B8G607|RF2_CHLAD Peptide chain release factor 2 OS=Chloroflexus aggregans (strain
MD-66 / DSM 9485) GN=prfB PE=3 SV=1
Length = 367
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 17/326 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME-----AIDYGLFKRA 61
LW+ P + E++ +L + V DL ++ + +LAE E A D RA
Sbjct: 44 LWNTPRVAQELMQRLTRLKEEVALWNDLDHRMTSLAELIELAEQEGDESLAADLAAELRA 103
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
V + + Q E+ LL GP D A ++I+AG G + WA LL MY RWA++
Sbjct: 104 ------VQREVAQRELEILLSGPYDDRDAFLSIQAGMGGTDAQDWAAMLLRMYTRWAERR 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY ++D + G+KSATIE YA+GY E G H LI N + + + A
Sbjct: 158 GYTVNLIDLSEGEEAGIKSATIEIRGPYAYGYARAEAGVHRLIRLSPFNAAHTRQTSFAR 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGER 236
V+V+P ++ +P+++I EDL +F S G+ + A I H+PTGI V ER
Sbjct: 218 VEVMP-EVDDAPEVEIKPEDLRIDVFRSGGHGGQGVNTTDSAVRITHLPTGIVVTCQNER 276
Query: 237 NHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVK 296
+ N+ AL L+A+LL ++ + ++ E + + R Y HP LV+D +
Sbjct: 277 SQIQNRETALRVLRARLLERELQRQAEERARLRGEYREAAFGNQMRTYYLHPSTLVKDHR 336
Query: 297 TGIQLPDFNSVLDGNIKPFIEAHINS 322
T + + +VLDG I PFIEA + +
Sbjct: 337 TDYETSNVQAVLDGEIDPFIEAFLRA 362
>sp|B1MEU8|RF2_MYCA9 Peptide chain release factor 2 OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=prfB PE=3 SV=1
Length = 367
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 176/328 (53%), Gaps = 10/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + +V +L+ + + +++LR + ++ ++ +LAE E+ D + A
Sbjct: 43 NLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAE-ESEDNSVVAEADAER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 102 VKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT +A+G LS E G H L+ F N S + + A V+V
Sbjct: 162 EVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFADVEV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V E++
Sbjct: 221 LPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK+ A+ L+A+LL ++ + + +K + + W + R YV PY++V+D++T
Sbjct: 280 QNKVAAMRVLQARLLERKRQEERAEMDALKGDGGSS-WGTQMRSYVLQPYQMVKDLRTEY 338
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + +VLDG+I FIEA I R D
Sbjct: 339 EVGNPAAVLDGDIDGFIEAGIRWRNRRD 366
>sp|Q9X1R5|RF2_THEMA Peptide chain release factor 2 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfB PE=3 SV=1
Length = 369
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 172/328 (52%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 46 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 103 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 163 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 223 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL LKAKL + E+ + I+ E W + R Y+ HPY +V+D +TG++
Sbjct: 282 NKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVE 341
Query: 301 LPDFNSVLDGNIKPFIEAHI--NSRRSS 326
+ ++V+DG+I FIEA + +RRSS
Sbjct: 342 TANVDAVMDGDIDMFIEAELVYFARRSS 369
>sp|B8HBH8|RF2_ARTCA Peptide chain release factor 2 OS=Arthrobacter chlorophenolicus
(strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
GN=prfB PE=3 SV=1
Length = 371
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 169/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPAAAQKITSRLSHRQSELERLTTLASRIDDLEVLVELGQDEG-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 ESIQKALKNLEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D ++ +F S G+ + A + HIPTG+ V E++
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGVVVSMQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ A+ L+++LL++ EQ + + + + W + R YV +PY++V+D++T +
Sbjct: 282 NRAAAMRVLQSRLLLLKKEQEDAEKKALAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++V DG I FI+A I R
Sbjct: 341 VGNTSAVFDGEIDDFIDAGIRWR 363
>sp|B1LB88|RF2_THESQ Peptide chain release factor 2 OS=Thermotoga sp. (strain RQ2)
GN=prfB PE=3 SV=1
Length = 367
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 172/328 (52%), Gaps = 11/328 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL LKAKL + E+ + I+ E W + R Y+ HPY +V+D +TG++
Sbjct: 280 NKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVE 339
Query: 301 LPDFNSVLDGNIKPFIEAHI--NSRRSS 326
+ ++V+DG+I FIEA + +RRSS
Sbjct: 340 TANVDAVMDGDIDMFIEAELVYFARRSS 367
>sp|Q82D82|RF2_STRAW Peptide chain release factor 2 OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=prfB PE=3 SV=1
Length = 368
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +ET+ ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VETTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLDRRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEYE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I+ F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIEGFLEAGIRWRKQQE 367
>sp|Q0SR12|RF2_CLOPS Peptide chain release factor 2 OS=Clostridium perfringens (strain
SM101 / Type A) GN=prfB PE=3 SV=1
Length = 364
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 161/321 (50%), Gaps = 8/321 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 47 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 ALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 165 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
L + D++I+ DL + + G+ + + A I HIPTGI VQ ER+ F+N
Sbjct: 225 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSN 283
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ LK+KL+ + + + E W + R YV HPY +V+D +T ++
Sbjct: 284 RDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVET 343
Query: 302 PDFNSVLDGNIKPFIEAHINS 322
+ N V+ G+I FI A++NS
Sbjct: 344 SNVNGVMGGDIDNFIIAYLNS 364
>sp|B1VV08|RF2_STRGG Peptide chain release factor 2 OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=prfB PE=3 SV=1
Length = 368
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 172/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LA E A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLEVLFELAADEGDAD-AQAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVRKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + ++ +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKASAMNVLQAKLLERRRQEEQAKMNALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEFE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ S+
Sbjct: 341 MGNPEAVFNGEIDGFVEAGIRWRKQSE 367
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5)
GN=prfB PE=3 SV=1
Length = 373
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 164/322 (50%), Gaps = 10/322 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID-YGLFKRAYRA 64
N W+D K+ +V+ + + +N LK+L ++ + + ++ E + + + +
Sbjct: 44 NFWEDQEKAKQVIQRRKWVEETLNKLKNLEKSVKDLEELVEITSEEDTETWAMMDEEIK- 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+V + L + E+ L G D + A +TI+AG+ G WA+ L MY RWA+K+GY
Sbjct: 103 --EVERTLRELELKTYLSGEMDAKNAYLTIQAGAGGTEACDWADMLFRMYKRWAEKKGYE 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
++D G+KS T+ + YA+GYL GE G H L+ + + + A V V
Sbjct: 161 VELIDITPDDVAGIKSVTVLVKGPYAYGYLKGEQGVHRLVRISPFDANARRHTSFAAVSV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
+P ++ ++I EDL F + G+ + A I HIPTGI V ER+ +
Sbjct: 221 MPQ-IDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRITHIPTGITVSCQQERSQY 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK KAL LKAKL + ++ + E W + R YV HPYKL++D++TG
Sbjct: 280 QNKRKALELLKAKLYQLEMKKLEEKKKQYEGEKTDIGWGHQIRSYVFHPYKLIKDLRTGY 339
Query: 300 QLPDFNSVLDGNIKPFIEAHIN 321
+ + +V+DG I FIE+++
Sbjct: 340 ETGNVEAVMDGEIDEFIESYLK 361
>sp|A5IM04|RF2_THEP1 Peptide chain release factor 2 OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=prfB PE=3 SV=1
Length = 367
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 171/327 (52%), Gaps = 11/327 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P ++ D++I EDL F + G+ + + A I H+PTGI V ER+
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQ 279
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL LKAKL + E+ + I+ E W + R YV HPY +V+D +TG++
Sbjct: 280 NKQTALKILKAKLYQLEMEKKQREIQEIQGELKDISWGNQIRSYVFHPYTMVKDHRTGVE 339
Query: 301 LPDFNSVLDGNIKPFIEAHI--NSRRS 325
+ ++V+DG+I FIEA + +RRS
Sbjct: 340 TANVDAVMDGDIDMFIEAELVYFARRS 366
>sp|A0LVP4|RF2_ACIC1 Peptide chain release factor 2 OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=prfB PE=3 SV=1
Length = 369
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 165/319 (51%), Gaps = 8/319 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+DP + V +L+ + ++ LR + ++ ++ +LAE E D A
Sbjct: 45 LWNDPENAQRVTSRLSFLQAEIRRVEGLRKRLDDVMVLFELAEAEN-DEPTRTEALAEMA 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K +D E+ LL G D A VTI + + G+ WA+ LL MY+RWA++ GY
Sbjct: 104 ALQKAIDDLEVRTLLSGEYDAREALVTINSQAGGVDAADWAQMLLRMYLRWAERHGYPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + +G L+ E G H L+ + + + A VDVVP
Sbjct: 164 ILDTSYAEEAGIKSATFIVHAPFTYGLLAAEHGTHRLVRISPFDNQARRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFAN 241
+ +E + + I ++++ +F S G+ + A I H+PTGI V ER+ N
Sbjct: 224 V-VEKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQN 282
Query: 242 KMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQL 301
+ A+ L+A+LL ++ + ++ ++ E + W + R YV HPY+LV+D++T ++
Sbjct: 283 RATAMMVLQARLLERRRQEEAAKLAALRGETTTS-WGTQIRNYVLHPYQLVKDLRTEVET 341
Query: 302 PDFNSVLDGNIKPFIEAHI 320
+ VLDG I FI+A +
Sbjct: 342 SNTAGVLDGEIDEFIDAGV 360
>sp|Q6GIN7|RF2_STAAR Peptide chain release factor 2 OS=Staphylococcus aureus (strain
MRSA252) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 167/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ + VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVKTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>sp|A0JYC5|RF2_ARTS2 Peptide chain release factor 2 OS=Arthrobacter sp. (strain FB24)
GN=prfB PE=3 SV=1
Length = 371
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 166/323 (51%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 NLWDDPAAAQKITSRLSHRQSELERLNTLVSRIDDLEVLVELGQDED-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 ESIRKSLKDLEVVTLLSGEFDEREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT E YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TIMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
PL +E + + I D ++ +F S G+ + A + HIPTG V E++
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVVSMQNEKSQLQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
N+ AL L+++LL++ EQ + + + W + R YV +PY++V+D++T +
Sbjct: 282 NRAAALRVLQSRLLLLKKEQEDAEKKAFAGDVKAS-WGDQMRSYVLNPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ + ++V DG I FI+A I R
Sbjct: 341 VGNTSAVFDGEIDDFIDAGIRWR 363
>sp|C3PES4|RF2_CORA7 Peptide chain release factor 2 OS=Corynebacterium aurimucosum
(strain ATCC 700975 / DSM 44827 / CN-1) GN=prfB PE=3
SV=1
Length = 368
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 170/323 (52%), Gaps = 8/323 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L LR + E+ ++++LAE E D +
Sbjct: 43 SLWDDPDHAQKVTSELSAQQAKLRKLNSLRGRIEDLPVMSELAEEEG-DEASQELVETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 102 KELGAAIESLEVTTMLSGEYDEREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 162 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + +++ D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 PV-VEQTDSIEVPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQIQ 280
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T +
Sbjct: 281 NKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTNYE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSR 323
+ D + VLDG+I F+E+ I R
Sbjct: 340 VGDPSKVLDGDIDGFLESGIRWR 362
>sp|Q6GB76|RF2_STAAS Peptide chain release factor 2 OS=Staphylococcus aureus (strain
MSSA476) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>sp|Q7A6R4|RF2_STAAN Peptide chain release factor 2 OS=Staphylococcus aureus (strain
N315) GN=prfB PE=1 SV=2
Length = 369
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>sp|Q99VM1|RF2_STAAM Peptide chain release factor 2 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=prfB PE=1 SV=2
Length = 369
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>sp|Q5HHR5|RF2_STAAC Peptide chain release factor 2 OS=Staphylococcus aureus (strain
COL) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>sp|Q2YSH5|RF2_STAAB Peptide chain release factor 2 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=prfB PE=3 SV=2
Length = 369
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>sp|A6TZN3|RF2_STAA2 Peptide chain release factor 2 OS=Staphylococcus aureus (strain
JH1) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 6/332 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
+T + ++V+DG+I PFIE+++ S D
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIESYLRQTMSHD 369
>sp|A1T6D1|RF2_MYCVP Peptide chain release factor 2 OS=Mycobacterium vanbaalenii (strain
DSM 7251 / PYR-1) GN=prfB PE=3 SV=1
Length = 368
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 174/330 (52%), Gaps = 14/330 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD ++ +V L+ + + +++LR + E+ ++ +LA E G A
Sbjct: 43 QLWDDQARAQKVTSDLSHAQGELRRIEELRGRLEDLPVLYELAAEE----GGSDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 99 AELTKLREDIEAMEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHK 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 159 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQNRRQTSFADV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ ET+ ++I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 EVLPV-TETTDHIEIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 277
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 278 QLQNKVSAMRVLQAKLLERKRLEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 336
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSRRSSD 327
++ + ++VLDG+I F+EA I R D
Sbjct: 337 EYEVGNPSAVLDGDIDGFLEAGIRWRNRKD 366
>sp|Q53915|RF2_STRCO Peptide chain release factor 2 OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=prfB PE=3 SV=2
Length = 368
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V ER+
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK A+N L+AKLL ++ + + +K + N W + R YV HPY++V+D++T +
Sbjct: 282 NKATAMNVLQAKLLERRRQEEQAKMDALKGDG-GNSWGNQMRSYVLHPYQMVKDLRTEHE 340
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSD 327
+ + +V +G I F+EA I R+ +
Sbjct: 341 VGNPEAVFNGEIDGFLEAGIRWRKQRE 367
>sp|Q49VV3|RF2_STAS1 Peptide chain release factor 2 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=prfB PE=3 SV=2
Length = 373
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 6/328 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K VVNA + L + E+ L +E D + +
Sbjct: 39 MMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 98 LEQSVQDFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ + D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F T ++ I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 218 SCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +V+D
Sbjct: 278 RSQIKNREAAMKTLKSKLYQLKIEEQEQEMAEIRGEQKEIGWGSQIRSYVFHPYAMVKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+T + ++V+DG+I PFIEA + S+
Sbjct: 338 RTNEETGKVDAVMDGDIGPFIEAFLRSQ 365
>sp|A6WEK6|RF2_KINRD Peptide chain release factor 2 OS=Kineococcus radiotolerans (strain
ATCC BAA-149 / DSM 14245 / SRS30216) GN=prfB PE=3 SV=1
Length = 367
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 170/329 (51%), Gaps = 10/329 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V +L+ ++ ++ + + ++ +++ +L+E E D A
Sbjct: 43 SLWDDPEHAQTVTSRLSAVQAELDRIEKMGGRIDDLEVLVELSEDEH-DADSLAEAETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V + L Q E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ GY+
Sbjct: 102 NEVKEQLAQLEVRTLLSGEYDSREAIVTIRSEAGGVDAADFAEMLMRMYLRWAERRGYKS 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGIKSATFKVAAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHF 239
P+ ET P+ ++ + S P G+ + A + H+PTGI V E++
Sbjct: 222 PVVAETDHVDVPENEVRVDVYRSSGPG--GQSVNTTDSAVRLTHLPTGIVVTCQNEKSQL 279
Query: 240 ANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGI 299
NK A+ L+AKLL + + + +K + W + R YV HPY++V+D++T
Sbjct: 280 QNKAAAMRVLQAKLLEKARKDRQAELDALKGDD-SGSWGNQMRSYVLHPYQMVKDLRTNY 338
Query: 300 QLPDFNSVLDGNIKPFIEAHINSRRSSDT 328
++ + +S+ DG I F+EA I R+ ++
Sbjct: 339 EVGNTSSIFDGEIDSFLEAGIRWRKQGES 367
>sp|B2V5M0|RF2_SULSY Peptide chain release factor 2 OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=prfB PE=3 SV=1
Length = 369
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 165/330 (50%), Gaps = 27/330 (8%)
Query: 6 NLWDDPTKSNEVLVK---LADSL-------KVVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
N W+D K+ E+ + L + L K VN L D L EME D
Sbjct: 44 NFWNDTKKAQEISSRRNYLGEKLEEILTVDKKVNNLLDY----------ITLLEMEE-DQ 92
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
L+ + ++ K + + E+ LL D + A +T++AGS G+ W E LL MY
Sbjct: 93 ELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNAILTVQAGSGGVEACDWTEMLLRMYT 152
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA+K GY+ +VD GVKSAT+ + YA+GYL GE G H L+ + +
Sbjct: 153 RWAEKRGYQVELVDFQPDDVAGVKSATLIIKGPYAYGYLKGEQGVHRLVRISPFDANKRR 212
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + V V+P ++ ++I++EDL + + G+ + A I HIPTGI V
Sbjct: 213 HTSFSAVSVIP-EIDEDIKVEINEEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVV 271
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
ER+ NK+KA N LKAKL + E+ ++ E W + R YV PY+
Sbjct: 272 ACQSERSQLQNKLKATNMLKAKLYQLELEKRKEKQKELEGEKKDITWGSQIRSYVFQPYQ 331
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 320
+V+D++TG + + +V+DG I FIE+++
Sbjct: 332 MVKDLRTGFETGNIEAVMDGEIDDFIESYL 361
>sp|Q5YR52|RF2_NOCFA Peptide chain release factor 2 OS=Nocardia farcinica (strain IFM
10152) GN=prfB PE=3 SV=1
Length = 372
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 175/333 (52%), Gaps = 25/333 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI----------AQLAEMEAIDY 55
+LW+D + V +L+ + + ++DLR + E+ ++ A+ A +E D
Sbjct: 43 DLWNDQDHAQRVTSELSHAQGELRRVEDLRRRLEDLPVLYELAEGEEGEARTAALEEAD- 101
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
A RA+L ++ E+ LL G D A V I++G+ G+ WAE L+ MY+
Sbjct: 102 -----AERAALHSD--VEAMEVRTLLSGEYDKREALVNIRSGAGGVDAADWAEMLMRMYI 154
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWAD+ GY V D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 155 RWADRHGYPVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLVRISPFDNQGRR 214
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+V+P+ +ET+ +++ + ++ ++ S G+ + A I HIPTGI V
Sbjct: 215 QTSFAEVEVLPV-VETTDHIEVPETEIRVDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 273
Query: 231 QSLGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYK 290
E++ NK+ A+ L+AKLL ++ + + +K + W + R YV HPY+
Sbjct: 274 TCQNEKSQLQNKISAMRVLQAKLLERKRQEERAEMDALKTNEGAS-WGNQMRSYVLHPYQ 332
Query: 291 LVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSR 323
+V+D++T ++ + ++VL+G+I FIE+ I R
Sbjct: 333 MVKDLRTNYEVNNPSAVLNGDIDGFIESGIRWR 365
>sp|Q6A808|RF2_PROAC Peptide chain release factor 2 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=prfB PE=3 SV=1
Length = 368
Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNHFA 240
P+ ET + I + DL +F + G+ + A + H+PTGI V ER+
Sbjct: 223 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQ 281
Query: 241 NKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQ 300
NK AL L+AKLL E+ + ++ +K E N W + R YV HPY++V+D++T +
Sbjct: 282 NKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHE 339
Query: 301 LPDFNSVLDGNIKPFIEAHINSRRSSDTD 329
+ + ++V DG+I FI+A I RR ++TD
Sbjct: 340 VGNTDAVFDGDIDDFIDAGIRWRRKNETD 368
>sp|Q6NIM2|RF2_CORDI Peptide chain release factor 2 OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=prfB PE=3 SV=1
Length = 369
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 164/325 (50%), Gaps = 13/325 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K +
Sbjct: 103 LTADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDH 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D + G+KSAT EY +G LS E GAH L+ + + + A ++
Sbjct: 159 KVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERNH 238
V+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V E++
Sbjct: 219 VLPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQ 277
Query: 239 FANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTG 298
NK A+ L+AKLL ++ + + + + W + R YV HPY++V+D++T
Sbjct: 278 IQNKASAMRVLQAKLLERKRQEERAELDALGAGGNAS-WGNQMRSYVLHPYQMVKDLRTN 336
Query: 299 IQLPDFNSVLDGNIKPFIEAHINSR 323
++ D VLDG+I +EA I R
Sbjct: 337 YEVNDPQKVLDGDIDGLLEAGIRWR 361
>sp|A4TDE5|RF2_MYCGI Peptide chain release factor 2 OS=Mycobacterium gilvum (strain
PYR-GCK) GN=prfB PE=3 SV=1
Length = 372
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 13/326 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD ++ +V L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 44 LWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYELAAEEE-GAGSSEAFAEADA 102
Query: 67 DVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++KL + E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELAKLREDIAGMEVRTLLSGEYDEREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT YA+G LS E G H L+ F N S + + A V
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQS-RRQTSFADV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGERN 237
+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V E++
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKS 280
Query: 238 HFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKT 297
NK+ A+ L+AKLL + + + +K + + W + R YV HPY++V+D++T
Sbjct: 281 QLQNKVSAMRVLQAKLLERKRLEERAEMDALKGDGGSS-WGNQMRSYVLHPYQMVKDLRT 339
Query: 298 GIQLPDFNSVLDGNIKPFIEAHINSR 323
++ + +VLDG+I F+EA I R
Sbjct: 340 EYEVGNPAAVLDGDIDGFLEAGIRWR 365
>sp|Q8CPZ1|RF2_STAES Peptide chain release factor 2 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=prfB PE=3 SV=2
Length = 371
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 6/331 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 39 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 98 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAVQSLGE 235
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V + E
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNE 277
Query: 236 RNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDV 295
R+ N+ A+ LK+KL + E+ ++ I+ E W + R YV HPY +++D
Sbjct: 278 RSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMIKDH 337
Query: 296 KTGIQLPDFNSVLDGNIKPFIEAHINSRRSS 326
+T + ++V+DG I PFIEA++ S
Sbjct: 338 RTNEETGKVDAVMDGEIGPFIEAYLRKEMDS 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,221,338
Number of Sequences: 539616
Number of extensions: 5039683
Number of successful extensions: 13514
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11378
Number of HSP's gapped (non-prelim): 950
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)