Query 020244
Match_columns 329
No_of_seqs 197 out of 771
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 2E-65 4.3E-70 494.4 12.0 265 56-329 137-403 (549)
2 COG4299 Uncharacterized protei 100.0 1.5E-43 3.3E-48 332.3 15.3 201 59-328 4-208 (371)
3 PF07786 DUF1624: Protein of u 99.8 4.9E-18 1.1E-22 154.9 13.8 113 62-186 1-118 (223)
4 COG3503 Predicted membrane pro 99.6 1.9E-14 4.1E-19 137.8 11.5 120 61-192 14-138 (323)
5 COG2311 Predicted membrane pro 99.4 1.4E-12 3E-17 129.8 12.4 119 58-196 8-142 (394)
6 PRK10835 hypothetical protein; 98.9 1.3E-08 2.8E-13 100.9 12.3 103 66-194 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 98.2 1.8E-06 3.9E-11 85.6 6.7 81 62-147 1-85 (358)
8 COG4645 Uncharacterized protei 97.7 5.3E-05 1.1E-09 74.6 6.0 84 59-147 20-110 (410)
9 PRK03854 opgC glucans biosynth 97.4 0.0011 2.4E-08 65.1 10.1 90 57-147 3-101 (375)
10 PF01757 Acyl_transf_3: Acyltr 97.3 0.0045 9.8E-08 55.9 12.8 53 64-117 2-61 (340)
11 COG3274 Predicted O-acyltransf 92.9 0.66 1.4E-05 46.0 9.2 57 60-116 2-65 (332)
12 COG1835 Predicted acyltransfer 92.1 0.081 1.8E-06 52.2 1.9 66 57-128 9-76 (386)
13 COG3594 NolL Fucose 4-O-acetyl 88.9 0.56 1.2E-05 46.7 4.6 50 60-115 2-54 (343)
14 PF05857 TraX: TraX protein; 60.8 1.3E+02 0.0029 27.3 13.7 64 65-140 2-65 (219)
15 COG3619 Predicted membrane pro 58.0 54 0.0012 31.0 8.1 58 90-149 48-105 (226)
16 PF08507 COPI_assoc: COPI asso 48.7 1.6E+02 0.0036 25.0 9.0 50 99-148 30-82 (136)
17 PF11654 DUF2665: Protein of u 44.5 31 0.00067 25.1 3.2 31 106-136 9-41 (47)
18 PF07760 DUF1616: Protein of u 40.3 3.4E+02 0.0075 26.0 13.7 74 103-189 29-106 (287)
19 COG5062 Uncharacterized membra 38.5 38 0.00083 34.4 3.9 116 60-192 108-227 (429)
20 KOG1638 Steroid reductase [Lip 31.3 66 0.0014 31.0 4.1 88 61-149 72-164 (257)
21 PRK13706 conjugal transfer pil 25.1 1.3E+02 0.0028 29.0 4.9 66 64-140 31-96 (248)
22 PHA02980 hypothetical protein; 23.4 5.5E+02 0.012 23.1 11.3 57 86-150 32-89 (160)
23 PF14362 DUF4407: Domain of un 23.2 2.3E+02 0.0051 27.1 6.4 48 102-149 52-99 (301)
24 PF02038 ATP1G1_PLM_MAT8: ATP1 22.6 75 0.0016 23.4 2.2 30 92-121 8-37 (50)
25 COG2851 CitM H+/citrate sympor 22.6 3E+02 0.0065 28.5 7.1 43 105-147 253-301 (433)
26 KOG3312 Predicted membrane pro 21.7 1.6E+02 0.0035 26.6 4.5 68 40-107 59-145 (186)
27 PF03547 Mem_trans: Membrane t 21.5 3.5E+02 0.0075 26.3 7.3 51 99-149 277-328 (385)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-65 Score=494.39 Aligned_cols=265 Identities=44% Similarity=0.792 Sum_probs=221.8
Q ss_pred hhccCchhhHHHHHHHHHHHHHHHHhCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 020244 56 LQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (329)
Q Consensus 56 ~~~~~~Rl~sLD~lRGlaiilMIlVN~~g~~y~~l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilr 135 (329)
.+...+|+.|+|+|||+++++||+||+.|+.||+++|++|||++++|+|||+|+||+|+|+++|+|+..+|....+|..-
T Consensus 137 la~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~rKa~~ 216 (549)
T KOG4683|consen 137 LATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSATRKAKA 216 (549)
T ss_pred cCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHH
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccCCccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc-hhhhhhhHHHHH
Q 020244 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRH-LSIFTAYQWQWI 214 (329)
Q Consensus 136 R~l~LfllGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Ylv~all~l~~~~~~~~~~~~~~-~~~~~~~~~qw~ 214 (329)
|..+|+++|++++++|.++++++|+..|.+++|++|||||+|++|+++|++..+..++...+..++. ....+.......
T Consensus 217 R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~~~~~S~~R~V~~~~L~~~~~~ 296 (549)
T KOG4683|consen 217 RICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPISPQRSWQRAVHDVCLFSGELA 296 (549)
T ss_pred HHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887664321111111 111111111112
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeeccccccCC-cCcchhhhhhhhhccccccCCCccccccccccCC
Q 020244 215 GGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLG-PACNAVGYVDRELWGINHLYSDPVWSRLEACTLS 293 (329)
Q Consensus 215 ~~~~ll~~Y~~ll~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~-~~~N~ag~IDR~iLG~~HlY~~p~~~~~~~~~~~ 293 (329)
+-..++..|..++|++-||+||-+|. ++||.++... |.||++||.||++||++|||++|+|+|.|+|+.+
T Consensus 297 ~~~~~V~~~~~~~~~~~~~~~~r~~~---------~~~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n 367 (549)
T KOG4683|consen 297 VLLALVATYLGLTFGLRVPGCPRGYL---------GPGGKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKRVKDCSIN 367 (549)
T ss_pred HHHHhhhhhhceecccccCCCCcccc---------cCCcccccCCCCCccchhhhHHhhhhhHHHhcCchHHHhhhcccC
Confidence 22233333444455555566555555 4566667665 5599999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhhHHHHhhhcC
Q 020244 294 SPNSGPLREDAPSWCRAPFEPEGLLRFIIQSSTLLV 329 (329)
Q Consensus 294 ~~~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~l~ 329 (329)
+|++||+|+|||+||.+|||||||||+|.|++++|+
T Consensus 368 ~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~ll 403 (549)
T KOG4683|consen 368 YPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLL 403 (549)
T ss_pred CCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.5e-43 Score=332.28 Aligned_cols=201 Identities=33% Similarity=0.499 Sum_probs=174.2
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhCCC---cccccccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 020244 59 KSKRVATLDAFRGLTVVLMILVDDAG---GAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (329)
Q Consensus 59 ~~~Rl~sLD~lRGlaiilMIlVN~~g---~~y~~l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilr 135 (329)
+.-|+.|+|++||+|+++||+||+.+ +.|+++.|++|.|+|.+|+|||+|+|++|.+|+||.+|..+.+....++.|
T Consensus 4 pa~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~R 83 (371)
T COG4299 4 PAFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYR 83 (371)
T ss_pred chhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHH
Confidence 34799999999999999999999965 388999999999999999999999999999999999987777778899999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccC-CccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccchhhhhhhHHHHH
Q 020244 136 RTLKLLFWGIILQGGYSHAPDALSYGVD-MKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWI 214 (329)
Q Consensus 136 R~l~LfllGlll~~~~~~~~~~~~~~~~-~~~~r~~GVLqrIgl~Ylv~all~l~~~~~~~~~~~~~~~~~~~~~~~qw~ 214 (329)
|.+.+|++|++++.+ .. ..-|.++ .+.+|.+||||||++||+++|+....+++ ++||+
T Consensus 84 Raa~~f~Lg~Lm~~F-~~---~~~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~ 142 (371)
T COG4299 84 RAAERFALGYLMGAF-VT---VRDWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQAL 142 (371)
T ss_pred HHHHHHHHHHHhhhc-cc---cceeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHH
Confidence 999999999998763 22 1123444 67899999999999999999998866654 58999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeeccccccCCcCcchhhhhhhhhccccccCCCccccccccccCCC
Q 020244 215 GGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSS 294 (329)
Q Consensus 215 ~~~~ll~~Y~~ll~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~~~~N~ag~IDR~iLG~~HlY~~p~~~~~~~~~~~~ 294 (329)
.+.+++++||++++..++|+.+ ++..+|+..++|+.+.+.||+|..
T Consensus 143 laavLL~gYwl~lm~~p~P~~~---------------------l~~~Gn~g~~~d~l~i~~~hLy~~------------- 188 (371)
T COG4299 143 LAAVLLAGYWLFLMFTPHPAAP---------------------LGGIGNVGESADPLQILNDHLYSA------------- 188 (371)
T ss_pred HHHHHHHHHHHHHhhcCCCccc---------------------cccccccccccchhhhhhhhhhcc-------------
Confidence 9999999999999888888754 334469999999999999999974
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchhhhHHHHhhhc
Q 020244 295 PNSGPLREDAPSWCRAPFEPEGLLRFIIQSSTLL 328 (329)
Q Consensus 295 ~~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~l 328 (329)
...|||||+|||+|+++++|
T Consensus 189 --------------dG~~dpeGLlstvPttv~VL 208 (371)
T COG4299 189 --------------DGGFDPEGLLSTVPTTVLVL 208 (371)
T ss_pred --------------cCCCCchhhhhcchHHHHHH
Confidence 13599999999999999986
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.77 E-value=4.9e-18 Score=154.85 Aligned_cols=113 Identities=29% Similarity=0.430 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCc-ccc-ccc-cc--CCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 020244 62 RVATLDAFRGLTVVLMILVDDAGG-AYA-RID-HS--PWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (329)
Q Consensus 62 Rl~sLD~lRGlaiilMIlVN~~g~-~y~-~l~-ha--~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilrR 136 (329)
|+.+||++||+||++|+++|.... .+. ..+ +. .+....+.|+++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998653 111 111 21 233456789999999999999999999887766 788999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccccCCccchhhhHHHHHHHHHHHHHHH
Q 020244 137 TLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALI 186 (329)
Q Consensus 137 ~l~LfllGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Ylv~all 186 (329)
++.|+++|++++... +....+...++||||.||++|++++++
T Consensus 77 ~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHH
Confidence 999999999987631 112334566889999999999998876
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.56 E-value=1.9e-14 Score=137.83 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=94.2
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCc--ccccccccCC-Cc--hhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 020244 61 KRVATLDAFRGLTVVLMILVDDAGG--AYARIDHSPW-NG--CTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (329)
Q Consensus 61 ~Rl~sLD~lRGlaiilMIlVN~~g~--~y~~l~ha~W-~G--~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilr 135 (329)
+|+.+||++||++|++|++.|...+ .+..++-+.= .| ..++..+.|.|+|++|+|..++-+|..++ .++++|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999986443 2223332221 22 24789999999999999999998877663 788999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccCCccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 020244 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTK 192 (329)
Q Consensus 136 R~l~LfllGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Ylv~all~l~~~~ 192 (329)
|.++|..++++++.. ||..-++++.++|||+.||++.++.+.+ +++++
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~f-l~lP~ 138 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAF-LWLPR 138 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHH-HhCch
Confidence 999999999999774 3423347899999999999999987755 45554
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.42 E-value=1.4e-12 Score=129.75 Aligned_cols=119 Identities=29% Similarity=0.490 Sum_probs=93.2
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhCCCccccc----ccccCC-Cch-----hHHHH-----HHHHHHHHHHHHHHHhhhc
Q 020244 58 QKSKRVATLDAFRGLTVVLMILVDDAGGAYAR----IDHSPW-NGC-----TLADF-----VMPFFLFIVGVAIALALKK 122 (329)
Q Consensus 58 ~~~~Rl~sLD~lRGlaiilMIlVN~~g~~y~~----l~ha~W-~G~-----t~aDl-----vfP~FlFi~Gvsi~ls~~r 122 (329)
..++|+.++|++||+|+++++++|.....+|- .-+..| .+. -+.|+ +.|+|.|++|+++...++|
T Consensus 8 ~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~~~r 87 (394)
T COG2311 8 AQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMMLRR 87 (394)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Confidence 34589999999999999999999986554431 112222 221 12233 8899999999999999999
Q ss_pred cCChhH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCccchhhhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020244 123 VPKING-AVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPN 196 (329)
Q Consensus 123 ~~~k~~-~~~kilrR~l~LfllGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Ylv~all~l~~~~~~~~ 196 (329)
+.+|++ .....+||...|+++|++|... . |. ++|-+.|.+++++.+.+.+++++
T Consensus 88 ~~~~g~~~~~~~~RR~~~Lll~G~iH~~f-i----------------W~---GDIL~~Ya~~g~ill~~~~~~~k 142 (394)
T COG2311 88 AARKGRRWVALYARRLLLLLLLGLIHALF-I----------------WD---GDILLAYALTGLILLLFRRRKPK 142 (394)
T ss_pred HHHccCccHHHHHHHHHHHHHHHHHHHHH-H----------------hc---chHHHHHHHHHHHHHHHHhcccc
Confidence 888775 5667899999999999999652 2 24 89999999999999999988765
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.90 E-value=1.3e-08 Score=100.89 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccccc-------ccc--cCCCch--hH-----HHHHHHHHHHHHHHHHHHhhhccCChhHH
Q 020244 66 LDAFRGLTVVLMILVDDAGGAYAR-------IDH--SPWNGC--TL-----ADFVMPFFLFIVGVAIALALKKVPKINGA 129 (329)
Q Consensus 66 LD~lRGlaiilMIlVN~~g~~y~~-------l~h--a~W~G~--t~-----aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~ 129 (329)
||++||+|+++++++|......+. ..+ +.+|.. .+ ..-++|+|.|++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999954322211 111 111211 11 2337899999999999999875221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCccchhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 020244 130 VKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRR 194 (329)
Q Consensus 130 ~~kilrR~l~LfllGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Ylv~all~l~~~~~~ 194 (329)
...||.+.|+++|++|... .|. ++|-..|.+++++.+.+.+.+
T Consensus 77 --~~~rRl~~Ll~~GliH~~l-----------------lw~---GDIL~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLL-----------------FWD---GDILLAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHH-----------------Hcc---chHHHHHHHHHHHHHHHHhcc
Confidence 3669999999999999642 123 788999999999988887763
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.24 E-value=1.8e-06 Score=85.56 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhC-CCcccccccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChh---HHHHHHHHHH
Q 020244 62 RVATLDAFRGLTVVLMILVDD-AGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKIIFRT 137 (329)
Q Consensus 62 Rl~sLD~lRGlaiilMIlVN~-~g~~y~~l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~---~~~~kilrR~ 137 (329)
|...||.+||+++ .||++|+ +++.+..+++.. +.+.|-. ..|+|++|++..+.+.|+..|. ...+|+.||+
T Consensus 1 Rd~riD~~RGlaL-~~Ifi~Hip~~~~~~~T~~~---~GfsdaA-E~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra 75 (358)
T PF10129_consen 1 RDLRIDFFRGLAL-VMIFIDHIPGNVLEWFTLRN---FGFSDAA-EGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRA 75 (358)
T ss_pred CchHHHHHHHHHH-HHHHHHhcCCcHHHHhcccc---ccCCCcc-hhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHH
Confidence 7788999999999 5556666 454443344333 4566643 7899999999999998876443 4788999999
Q ss_pred HHHHHHHHHH
Q 020244 138 LKLLFWGIIL 147 (329)
Q Consensus 138 l~LfllGlll 147 (329)
.+|..--+++
T Consensus 76 ~~lY~a~i~l 85 (358)
T PF10129_consen 76 WQLYVAHIAL 85 (358)
T ss_pred HHHHHHHHHH
Confidence 9988766654
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=5.3e-05 Score=74.63 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=62.7
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhC-CCcccccccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChh---HHHHHHH
Q 020244 59 KSKRVATLDAFRGLTVVLMILVDD-AGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKII 134 (329)
Q Consensus 59 ~~~Rl~sLD~lRGlaiilMIlVN~-~g~~y~~l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~---~~~~kil 134 (329)
..+|+..||++||++++.| ++|+ ++..+..++|.+ +.+.|-. ..|+|++|+++...++|+.-++ ....|+.
T Consensus 20 ~mkRdtriDv~Ral~Lv~I-fiNHvpgt~le~itHkn---fgfsdaA-EaFVliSGllvgmaYsrKf~~ggrla~~lkiW 94 (410)
T COG4645 20 PMKRDTRIDVFRALALVTI-FINHVPGTILEEITHKN---FGFSDAA-EAFVLISGLLVGMAYSRKFMKGGRLAGTLKIW 94 (410)
T ss_pred ccCchhHHHHHHHHHHHHH-HHhcccHHHHHHhhccc---ccccccc-hhhhhHHHHHHHHHHhhhhccCcHHHHHHHHH
Confidence 3479999999999999766 5566 554445566765 3455543 7899999999999998876543 3456899
Q ss_pred HHHHHHHH---HHHHH
Q 020244 135 FRTLKLLF---WGIIL 147 (329)
Q Consensus 135 rR~l~Lfl---lGlll 147 (329)
||+..|.. .|+++
T Consensus 95 rRA~~LY~~himtl~i 110 (410)
T COG4645 95 RRAMVLYVAHIMTLVI 110 (410)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999987 44444
No 9
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.37 E-value=0.0011 Score=65.05 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=59.0
Q ss_pred hccCchhhHHHHHHHHHHHHHHHHhCCCc--cccc----ccccCCCch--hHH-HHHHHHHHHHHHHHHHHhhhccCChh
Q 020244 57 QQKSKRVATLDAFRGLTVVLMILVDDAGG--AYAR----IDHSPWNGC--TLA-DFVMPFFLFIVGVAIALALKKVPKIN 127 (329)
Q Consensus 57 ~~~~~Rl~sLD~lRGlaiilMIlVN~~g~--~y~~----l~ha~W~G~--t~a-DlvfP~FlFi~Gvsi~ls~~r~~~k~ 127 (329)
+++++|...+|.+||+++++.++.|.... ...+ .+...|-.. .+. -+.+|+|.|++|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 44568999999999999999998886321 1111 111122111 111 2468999999999988886554 334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020244 128 GAVKKIIFRTLKLLFWGIIL 147 (329)
Q Consensus 128 ~~~~kilrR~l~LfllGlll 147 (329)
+..++=++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 56777778887777777544
No 10
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.33 E-value=0.0045 Score=55.85 Aligned_cols=53 Identities=23% Similarity=0.478 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcccccccccCCCch-------hHHHHHHHHHHHHHHHHHH
Q 020244 64 ATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGC-------TLADFVMPFFLFIVGVAIA 117 (329)
Q Consensus 64 ~sLD~lRGlaiilMIlVN~~g~~y~~l~ha~W~G~-------t~aDlvfP~FlFi~Gvsi~ 117 (329)
.++|.+||++++++++.|........ ....+... .......|+|.+++|+.+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPP-PFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccc-ccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 58999999999999998865421110 00011000 4667789999999999998
No 11
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=92.89 E-value=0.66 Score=45.95 Aligned_cols=57 Identities=16% Similarity=0.385 Sum_probs=41.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCc-cccc-cccc-CC---Cch-hHHHHHHHHHHHHHHHHH
Q 020244 60 SKRVATLDAFRGLTVVLMILVDDAGG-AYAR-IDHS-PW---NGC-TLADFVMPFFLFIVGVAI 116 (329)
Q Consensus 60 ~~Rl~sLD~lRGlaiilMIlVN~~g~-~y~~-l~ha-~W---~G~-t~aDlvfP~FlFi~Gvsi 116 (329)
.+|+.+||.+|++|++..+.+|.... .+.. +.|. .| |++ ++...+-|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999988888887543 2222 2232 14 555 467789999999999764
No 12
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=92.10 E-value=0.081 Score=52.20 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=42.9
Q ss_pred hccCchhhHHHHHHHHHHHHHHHHhCCCcccccccccCC--CchhHHHHHHHHHHHHHHHHHHHhhhccCChhH
Q 020244 57 QQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPW--NGCTLADFVMPFFLFIVGVAIALALKKVPKING 128 (329)
Q Consensus 57 ~~~~~Rl~sLD~lRGlaiilMIlVN~~g~~y~~l~ha~W--~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~ 128 (329)
.+.++|+.+||.+||++.++.++.|......+. +..+ +|..-. .+|..++|+-+.-++.++..++.
T Consensus 9 ~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~~g~~gV----diFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 9 NSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVGRGVLGV----DLFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred cccccccCCcHHHHHHHHHHHHHHHccccccCC--CCccccccccce----eEeeeccHHHHHHHHHHHhhcCC
Confidence 344679999999999999888887764321110 1111 121223 46888999999999876554443
No 13
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=88.94 E-value=0.56 Score=46.75 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=37.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCcccccccccCCCc---hhHHHHHHHHHHHHHHHH
Q 020244 60 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNG---CTLADFVMPFFLFIVGVA 115 (329)
Q Consensus 60 ~~Rl~sLD~lRGlaiilMIlVN~~g~~y~~l~ha~W~G---~t~aDlvfP~FlFi~Gvs 115 (329)
++|..++|+.||+-+++.++-|..+..++ |.- ..+.-+-+|+|.||+|+-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 57999999999999999998887553222 322 234566789999999986
No 14
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=60.84 E-value=1.3e+02 Score=27.34 Aligned_cols=64 Identities=17% Similarity=0.342 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 020244 65 TLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKL 140 (329)
Q Consensus 65 sLD~lRGlaiilMIlVN~~g~~y~~l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilrR~l~L 140 (329)
|-|.+.=+|++.|++=|. +... ....+| -..+..+.||+|.|++.-++.- .+..+|.++|.+..
T Consensus 2 s~~~LK~iA~i~M~iDHi-~~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~~~ 65 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHI-GFLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLLIF 65 (219)
T ss_pred chhHHHHHHHHHHHHHhh-cccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 468888899999977443 3211 222223 1237888999999999877553 22346667775543
No 15
>COG3619 Predicted membrane protein [Function unknown]
Probab=57.97 E-value=54 Score=31.01 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=43.0
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhh
Q 020244 90 IDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQG 149 (329)
Q Consensus 90 l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilrR~l~LfllGlll~~ 149 (329)
.+-+.++.....+...|++.|++|+.+.-.++|+..| ...-.+.+...|+.+++....
T Consensus 48 i~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~ 105 (226)
T COG3619 48 IELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLAL 105 (226)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHH
Confidence 4455666677889999999999999999988877665 333456666777777776644
No 16
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=48.72 E-value=1.6e+02 Score=24.99 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccC--Ch-hHHHHHHHHHHHHHHHHHHHHh
Q 020244 99 TLADFVMPFFLFIVGVAIALALKKVP--KI-NGAVKKIIFRTLKLLFWGIILQ 148 (329)
Q Consensus 99 t~aDlvfP~FlFi~Gvsi~ls~~r~~--~k-~~~~~kilrR~l~LfllGlll~ 148 (329)
.+.+.+..+|..++|+.+.+.=-+.. .| -......+-|++..+++|.+..
T Consensus 30 ~~~~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~ 82 (136)
T PF08507_consen 30 SFSSFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCL 82 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHH
Confidence 35588999999999998766522111 11 1355567789999999998764
No 17
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=44.54 E-value=31 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhccCCh--hHHHHHHHHH
Q 020244 106 PFFLFIVGVAIALALKKVPKI--NGAVKKIIFR 136 (329)
Q Consensus 106 P~FlFi~Gvsi~ls~~r~~~k--~~~~~kilrR 136 (329)
|+|..++|++.++.+.++..+ +.....+++|
T Consensus 9 P~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~~ 41 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREGRPEGHSLNELLRR 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 899999999999999876544 3344444443
No 18
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=40.28 E-value=3.4e+02 Score=26.04 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhh--hccC-Chh-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCccchhhhHHHHHHH
Q 020244 103 FVMPFFLFIVGVAIALAL--KKVP-KIN-GAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIAL 178 (329)
Q Consensus 103 lvfP~FlFi~Gvsi~ls~--~r~~-~k~-~~~~kilrR~l~LfllGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl 178 (329)
+.+|+.+|+=|+++.=++ ++.. +.- +....+---.+...++|+++|..+ | .++..-++--+++
T Consensus 29 ~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~~-~------------~i~~~~i~~~l~~ 95 (287)
T PF07760_consen 29 LGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYTP-W------------GIRLIPILISLSI 95 (287)
T ss_pred HHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcc-C------------CcchhHHHHHHHH
Confidence 477889999999998877 3322 211 122223334446667788887531 1 2455556666666
Q ss_pred HHHHHHHHHHH
Q 020244 179 VYVVVALIETL 189 (329)
Q Consensus 179 ~Ylv~all~l~ 189 (329)
.-++++++...
T Consensus 96 ~t~~~~~~a~~ 106 (287)
T PF07760_consen 96 FTLVLSIIAYI 106 (287)
T ss_pred HHHHHHHHHHH
Confidence 66666655533
No 19
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=38.54 E-value=38 Score=34.44 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=66.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCccccc----ccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 020244 60 SKRVATLDAFRGLTVVLMILVDDAGGAYAR----IDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (329)
Q Consensus 60 ~~Rl~sLD~lRGlaiilMIlVN~~g~~y~~----l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilr 135 (329)
+.|...+|..|+..+..-... ..+-.+|. +..+.-.|..+-|+-.-.|+|-.|+--. |.++ ++.+|
T Consensus 108 ~~~~~~it~yR~~i~~~tvia-IlAvDFp~fprRlgKsetwGtsLMDiGVGSFvynsGivs~----Raks-----K~~lk 177 (429)
T COG5062 108 PYTSMAITRYRFLIIGCTVIA-ILAVDFPFFPRRLGKSETWGTSLMDIGVGSFVYNSGIVST----RAKS-----KRKLK 177 (429)
T ss_pred ccchhhhHHHHHHHHHhhhhh-eeeeccccchHhhhhhhcccceeeecccceeEeccceeec----ccCc-----cHHHH
Confidence 356788999999655332221 11112222 3344455888999988889988887522 2222 23788
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccCCccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 020244 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTK 192 (329)
Q Consensus 136 R~l~LfllGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Ylv~all~l~~~~ 192 (329)
-++.|+++|++=.-.--+ +. -..+.|=.||=.-.=+.-.+..+.+.+.++
T Consensus 178 n~lillflGflR~f~vk~----ln---yqvhvrEyGvhwNFfftLgllnl~~~fir~ 227 (429)
T COG5062 178 NALILLFLGFLRYFSVKL----LN---YQVHVREYGVHWNFFFTLGLLNLASLFIRT 227 (429)
T ss_pred hhhHHHHHHHHHHHHHHH----hc---cccccHHheeehhHHHHHHHHHHHHHHhhh
Confidence 999999999864211000 01 134556556655555555555555544443
No 20
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=31.33 E-value=66 Score=31.04 Aligned_cols=88 Identities=17% Similarity=0.064 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCc--ccccccccCCCchhHHHHHH-HHHHHHHHHHHHHhhhccCChhHHHHHHHH--
Q 020244 61 KRVATLDAFRGLTVVLMILVDDAGG--AYARIDHSPWNGCTLADFVM-PFFLFIVGVAIALALKKVPKINGAVKKIIF-- 135 (329)
Q Consensus 61 ~Rl~sLD~lRGlaiilMIlVN~~g~--~y~~l~ha~W~G~t~aDlvf-P~FlFi~Gvsi~ls~~r~~~k~~~~~kilr-- 135 (329)
.|-.+-|..+|..+..|.+||.... .|| +.+..-++.-..+.+. -.|-+.-|++..+.....+.-.+.....+|
T Consensus 72 ~~~~~~~~~~~~~L~~~flvHYf~R~liyp-f~~~~~~~~p~~i~a~a~~F~~~NG~lqg~y~~~~~~~~d~~~~~~r~l 150 (257)
T KOG1638|consen 72 FRGPSSDLPPGLLLLSAFLVHYFHRALIYP-FLIRSSNPSPAIIVALAIAFCTLNGTLQGLYLSHYQLYEDPWVTDIRFL 150 (257)
T ss_pred cCCCcccccccHHHHHHHHHHHHHHHHhhe-eeecCCCCccHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCchhHHHH
Confidence 3556667799999999999998654 565 4444436665555533 347777888877776554332222222222
Q ss_pred HHHHHHHHHHHHhh
Q 020244 136 RTLKLLFWGIILQG 149 (329)
Q Consensus 136 R~l~LfllGlll~~ 149 (329)
=+..|++.|+++|.
T Consensus 151 iG~~lfv~Gm~iN~ 164 (257)
T KOG1638|consen 151 IGVVLFVTGMLINI 164 (257)
T ss_pred HHHHHHHHHhhhhh
Confidence 36788999999875
No 21
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=25.15 E-value=1.3e+02 Score=29.05 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 020244 64 ATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKL 140 (329)
Q Consensus 64 ~sLD~lRGlaiilMIlVN~~g~~y~~l~ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilrR~l~L 140 (329)
-++|.+.=++++.|.+=|... ..+ ....| =..+..+.||+|.|.-|+=++ +.. +..+|.++|.+..
T Consensus 31 g~~dlLK~IAli~M~iDHi~~-~~~--~~~~~-l~~iGRlAfPiFafVeGfNla----~hT---~~r~kY~~RL~if 96 (248)
T PRK13706 31 GQRDIIKTVALVLMVLDHINR-ILH--LDQEW-MFLAGRGAFPLFALVWGLNLS----RHA---HIRQPAINRLWGW 96 (248)
T ss_pred chhHHHHHHHHHHHHHHHHHH-HhC--CcHHH-HHHHHHHHHHHHHHHHHHhhc----ccc---chHHHHHHHHHHH
Confidence 468999999999998854321 111 11112 013678899999996555222 111 2345666665544
No 22
>PHA02980 hypothetical protein; Provisional
Probab=23.38 E-value=5.5e+02 Score=23.12 Aligned_cols=57 Identities=5% Similarity=-0.011 Sum_probs=35.3
Q ss_pred ccccccccCCCchh-HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 020244 86 AYARIDHSPWNGCT-LADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQGG 150 (329)
Q Consensus 86 ~y~~l~ha~W~G~t-~aDlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilrR~l~LfllGlll~~~ 150 (329)
.|..++..+|+--. .--.+-+.--.+||+|+.+..+++. + .++.+.++++-+++|..
T Consensus 32 ~Y~~L~KP~~~PP~wvF~pVWtiLY~lMgiA~~lvw~~~~--~------~~~al~ly~~QL~LN~~ 89 (160)
T PHA02980 32 NYTKSNKHLIFPPYYVRFSLYIISYIFMGHGMYLIHTRRR--D------SNELIAYYILQLSINLS 89 (160)
T ss_pred CCccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHccc--c------cchHHHHHHHHHHHHHH
Confidence 34445555552211 2223445577889999999985521 1 46778889999998863
No 23
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.17 E-value=2.3e+02 Score=27.06 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhh
Q 020244 102 DFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQG 149 (329)
Q Consensus 102 DlvfP~FlFi~Gvsi~ls~~r~~~k~~~~~kilrR~l~LfllGlll~~ 149 (329)
-+++-+++|.+-=.+..+.++.......+...+-|.++=+++|+++..
T Consensus 52 glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliaivIs~ 99 (301)
T PF14362_consen 52 GLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAIVISE 99 (301)
T ss_pred HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777777777777766655444556678899999999998854
No 24
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=22.64 E-value=75 Score=23.37 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 020244 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (329)
Q Consensus 92 ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~ 121 (329)
|-+|+-+....++|-..+|++|+.+.+|-+
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGILIILSGK 37 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred ccchhHhhccchHHHHHHHHHHHHHHHcCc
Confidence 445777788999999999999999888854
No 25
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=22.56 E-value=3e+02 Score=28.49 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhccCChh---HHHHH---HHHHHHHHHHHHHHH
Q 020244 105 MPFFLFIVGVAIALALKKVPKIN---GAVKK---IIFRTLKLLFWGIIL 147 (329)
Q Consensus 105 fP~FlFi~Gvsi~ls~~r~~~k~---~~~~k---ilrR~l~LfllGlll 147 (329)
-|-|+|+.|+++++.++-..-|. +...+ .+.-...+|+-|++.
T Consensus 253 p~~~lFmig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AAGif~ 301 (433)
T COG2851 253 PPGVLFMIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAAGIFL 301 (433)
T ss_pred chhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHHHHHh
Confidence 37799999999999986322221 12222 445566777888876
No 26
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=21.73 E-value=1.6e+02 Score=26.61 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=40.9
Q ss_pred cccchhchhhhHHhHhhhccCchhhHHHHHHHHHHHHHHH------HhCCCc--cc------c-----cccccCCCchhH
Q 020244 40 SEVQDEQKGELQLQQLLQQKSKRVATLDAFRGLTVVLMIL------VDDAGG--AY------A-----RIDHSPWNGCTL 100 (329)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~Rl~sLD~lRGlaiilMIl------VN~~g~--~y------~-----~l~ha~W~G~t~ 100 (329)
.+....++-..|-++.....++|..|+=-+.-...++..| .|...+ +. | -+.|..-.|--.
T Consensus 59 ~s~~k~~kkKieR~Ee~LK~~nRDlSl~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~iqglSHRnL~GdD~ 138 (186)
T KOG3312|consen 59 DSNDKSKKKKIERVEEKLKNNNRDLSLFKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISIIQGLSHRNLKGDDM 138 (186)
T ss_pred cchhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHHHhcccccCCCCCCc
Confidence 3344455666777888888889999887666544433333 465422 11 1 155776667667
Q ss_pred HHHHHHH
Q 020244 101 ADFVMPF 107 (329)
Q Consensus 101 aDlvfP~ 107 (329)
+|.-|-+
T Consensus 139 TDCSfiF 145 (186)
T KOG3312|consen 139 TDCSFIF 145 (186)
T ss_pred cchHHHH
Confidence 7776543
No 27
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.45 E-value=3.5e+02 Score=26.29 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCChh-HHHHHHHHHHHHHHHHHHHHhh
Q 020244 99 TLADFVMPFFLFIVGVAIALALKKVPKIN-GAVKKIIFRTLKLLFWGIILQG 149 (329)
Q Consensus 99 t~aDlvfP~FlFi~Gvsi~ls~~r~~~k~-~~~~kilrR~l~LfllGlll~~ 149 (329)
.+++...|+=+|+.|..+.....+...+. .....++-|.+.+=++++.+..
T Consensus 277 ~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~ 328 (385)
T PF03547_consen 277 YLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVF 328 (385)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999999875432211111 2233577888888888877643
Done!