Query 020244
Match_columns 329
No_of_seqs 197 out of 771
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 25.1 21 0.00073 22.7 0.7 28 92-119 4-31 (31)
2 2jo1_A Phospholemman; FXYD1, N 24.6 65 0.0022 24.3 3.4 30 92-121 10-39 (72)
3 2jp3_A FXYD domain-containing 22.9 61 0.0021 24.1 2.9 30 92-121 11-40 (67)
4 2zxe_G FXYD10, phospholemman-l 20.4 59 0.002 24.7 2.4 30 92-121 13-42 (74)
5 2ks1_B Epidermal growth factor 10.5 3.5E+02 0.012 18.2 4.0 28 168-195 13-40 (44)
6 2l2t_A Receptor tyrosine-prote 10.2 3.5E+02 0.012 18.3 3.9 28 168-195 12-39 (44)
7 2jwa_A Receptor tyrosine-prote 8.1 3E+02 0.01 18.7 2.9 27 168-195 14-40 (44)
8 2l9u_A Receptor tyrosine-prote 6.3 3.7E+02 0.013 17.6 2.5 17 64-80 8-24 (40)
9 1zcd_A Na(+)/H(+) antiporter 1 5.2 8.5E+02 0.029 23.4 5.6 51 70-120 19-83 (388)
10 4ev6_A Magnesium transport pro 3.7 2.1E+03 0.071 19.4 7.0 24 171-194 314-337 (339)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=25.07 E-value=21 Score=22.75 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.2
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 020244 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (329)
Q Consensus 92 ha~W~G~t~aDlvfP~FlFi~Gvsi~ls 119 (329)
|.+|+.+....+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4567777788888888999999887654
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.58 E-value=65 Score=24.27 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=25.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 020244 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (329)
Q Consensus 92 ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~ 121 (329)
|.+|.-+...-++|-..+|++|+.+-+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 456777788899999999999999999974
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.92 E-value=61 Score=24.13 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 020244 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (329)
Q Consensus 92 ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~ 121 (329)
|-+|.-+...-++|-..+|++|+.+-+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 456777788999999999999999999974
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=20.36 E-value=59 Score=24.66 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 020244 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (329)
Q Consensus 92 ha~W~G~t~aDlvfP~FlFi~Gvsi~ls~~ 121 (329)
|-+|.-+...-++|-..+|++|+.+-+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 556777888999999999999999999874
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.46 E-value=3.5e+02 Score=18.23 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 020244 168 RWCGILQRIALVYVVVALIETLTTKRRP 195 (329)
Q Consensus 168 r~~GVLqrIgl~Ylv~all~l~~~~~~~ 195 (329)
.--||..-+.+.-+++.+++++.++++.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 3457777666665666666666666554
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.21 E-value=3.5e+02 Score=18.32 Aligned_cols=28 Identities=7% Similarity=0.158 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 020244 168 RWCGILQRIALVYVVVALIETLTTKRRP 195 (329)
Q Consensus 168 r~~GVLqrIgl~Ylv~all~l~~~~~~~ 195 (329)
.--||..-+.+.-+++.+.+++.++++.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 3457777666666666666666666553
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.11 E-value=3e+02 Score=18.70 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 020244 168 RWCGILQRIALVYVVVALIETLTTKRRP 195 (329)
Q Consensus 168 r~~GVLqrIgl~Ylv~all~l~~~~~~~ 195 (329)
..-||.+ +.+..+++..+.+|+++++.
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhhh
Confidence 3446666 44555555555566666553
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.32 E-value=3.7e+02 Score=17.56 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 020244 64 ATLDAFRGLTVVLMILV 80 (329)
Q Consensus 64 ~sLD~lRGlaiilMIlV 80 (329)
.++-+.-|+++++|++-
T Consensus 8 malt~i~gl~vif~~lg 24 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLG 24 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 46778889999888874
No 9
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=5.22 E-value=8.5e+02 Score=23.37 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCC--cccccccccC-------CC-----chhHHHHHHHHHHHHHHHHHHHhh
Q 020244 70 RGLTVVLMILVDDAG--GAYARIDHSP-------WN-----GCTLADFVMPFFLFIVGVAIALAL 120 (329)
Q Consensus 70 RGlaiilMIlVN~~g--~~y~~l~ha~-------W~-----G~t~aDlvfP~FlFi~Gvsi~ls~ 120 (329)
=..+++.|++.|.+. ..|..+-|.+ ++ .....|-.+-+|+|++|+=+=..+
T Consensus 19 ~~~~~~al~~aNs~~~~~~y~~~~~~~~~~~~g~~~~~~~l~~windglm~lFff~vGLEik~e~ 83 (388)
T 1zcd_A 19 IIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKREL 83 (388)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccHhHHHHHHccccceeccccccCCcHHHHHhhHhHHHHHHHHHHHhhHHH
Confidence 345667888899975 3564333321 11 123789999999999999875544
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=3.69 E-value=2.1e+03 Score=19.40 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCC
Q 020244 171 GILQRIALVYVVVALIETLTTKRR 194 (329)
Q Consensus 171 GVLqrIgl~Ylv~all~l~~~~~~ 194 (329)
|-.--++++-+++.+++++|+|++
T Consensus 314 gy~~~l~~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 314 GFWLVMALMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333445555666666666776654
Done!