BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020245
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 21 RSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA 80
R+ + ++ +YA GG N++ ++ E W + + R+GV +A
Sbjct: 112 RNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPERDEW---HLVAPMLTRRIGVGVAV 166
Query: 81 VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFG 140
+ +Y GG DGT++ LN + N+W +++ A RS +Y G
Sbjct: 167 LNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAG 222
Query: 141 GCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAG-VEVDD 199
G +LN + +DV W R G+ V QG+I+V+ G+ G +D
Sbjct: 223 GYDGQDQLNSVERYDVETETWTFVAPMKHR---RSALGITVHQGRIYVLGGYDGHTFLDS 279
Query: 200 VHCFDPAHAQWAQV 213
V C+DP W++V
Sbjct: 280 VECYDPDTDTWSEV 293
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Query: 21 RSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA 80
R+ + ++ +YA GG N++ ++ E W + + R+GV +A
Sbjct: 113 RNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPERDEW---HLVAPMLTRRIGVGVAV 167
Query: 81 VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFG 140
+ +Y GG DGT++ LN + N+W +++ A RS +Y G
Sbjct: 168 LNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAG 223
Query: 141 GCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAG-VEVDD 199
G +LN + +DV W R G+ V QG+I+V+ G+ G +D
Sbjct: 224 GYDGQDQLNSVERYDVETETWTFVAPMKHR---RSALGITVHQGRIYVLGGYDGHTFLDS 280
Query: 200 VHCFDPAHAQWAQVE--TSGEK 219
V C+DP W++V TSG
Sbjct: 281 VECYDPDTDTWSEVTRMTSGRS 302
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 98/255 (38%), Gaps = 30/255 (11%)
Query: 21 RSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA 80
R SH VG+ +Y GG F + + L ++ TW D+ PR G+
Sbjct: 16 RGSHMAPKVGRLIYTAGGYFRQSL---SYLEAYNPSDGTWL---RLADLQVPRSGLAGCV 69
Query: 81 VGHTIYMFGGRDGT---HKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVY 137
VG +Y GGR+ + + + + L ++ TNQW+ + R+ D H+Y
Sbjct: 70 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV---PRNRIGVGVIDGHIY 126
Query: 138 IFGGCGVSGRLNDLWGFDVVDRKW-IQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV- 195
GG N + ++ +W + P R G G+ V ++ V GF G
Sbjct: 127 AVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR----RIGVGVAVLNRLLYAVGGFDGTN 182
Query: 196 EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKF 255
++ C+ P +W + T RS + I GG L +
Sbjct: 183 RLNSAECYYPERNEWRMITAMN---TIRSGAGVCVLHNCIYAAGGYDGQDQLNSV----- 234
Query: 256 AGELYSLDTETLVWT 270
E Y ++TET WT
Sbjct: 235 --ERYDVETET--WT 245
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 73 RVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD 132
R+GV +A + +Y GG DGT++ LN + N+W +++ + RS
Sbjct: 152 RIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITPMNT---IRSGAGVCVL 207
Query: 133 DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGF 192
+Y GG +LN + +DV W + R G+ V QGKI+V+ G+
Sbjct: 208 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHH---RSALGITVHQGKIYVLGGY 264
Query: 193 AG-VEVDDVHCFDPAHAQWAQV 213
G +D V C+DP W++V
Sbjct: 265 DGHTFLDSVECYDPDSDTWSEV 286
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 73 RVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD 132
R+GV +A + +Y GG DGT++ LN + N+W +++ + RS
Sbjct: 153 RIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITPMNT---IRSGAGVCVL 208
Query: 133 DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGF 192
+Y GG +LN + +DV W + R G+ V QGKI+V+ G+
Sbjct: 209 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHH---RSALGITVHQGKIYVLGGY 265
Query: 193 AG-VEVDDVHCFDPAHAQWAQV 213
G +D V C+DP W++V
Sbjct: 266 DGHTFLDSVECYDPDSDTWSEV 287
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 13/194 (6%)
Query: 21 RSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA 80
R+ + ++ +YA GG N++ ++ E W + R+GV +A
Sbjct: 112 RNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPERDEW---HLVAPXLTRRIGVGVAV 166
Query: 81 VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFG 140
+ +Y GG DGT++ LN + N+W ++ A RS +Y G
Sbjct: 167 LNRLLYAVGGFDGTNR-LNSAECYYPERNEWRXIT---AXNTIRSGAGVCVLHNCIYAAG 222
Query: 141 GCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAG-VEVDD 199
G +LN + +DV W R G+ V QG+I+V+ G+ G +D
Sbjct: 223 GYDGQDQLNSVERYDVETETWTFVAPXKHR---RSALGITVHQGRIYVLGGYDGHTFLDS 279
Query: 200 VHCFDPAHAQWAQV 213
V C+DP W++V
Sbjct: 280 VECYDPDTDTWSEV 293
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 14/186 (7%)
Query: 70 PPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHST 129
P PR + A IY GG + + L +DTRT W + R H
Sbjct: 89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW---HTKPSMLTQRCSHGM 145
Query: 130 AADDRHVYIFGGC---GVSGR-LNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK 185
+ +Y+ GG VSGR LN +D W + E R GL+ + K
Sbjct: 146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE---ARKNHGLVFVKDK 202
Query: 186 IWVVYGFAGV-EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDP 244
I+ V G G+ +D+V +D +W V P +G + V G
Sbjct: 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMV---SPMPWKGVTVKCAAVGSIVYVLAGFQGV 259
Query: 245 SDLGHL 250
LGH+
Sbjct: 260 GRLGHI 265
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 20 ARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTM- 78
AR +H + V K++A GG+ + +N+ +D++ W + P P GVT+
Sbjct: 190 ARKNHGLVFVKDKIFAVGGQ--NGLGGLDNVEYYDIKLNEWKMVS-----PMPWKGVTVK 242
Query: 79 -AAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGP 121
AAVG +Y+ G G + L + ++T T++W S A P
Sbjct: 243 CAAVGSIVYVLAGFQGVGR-LGHILEYNTETDKWVANSKVRAFP 285
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 18/178 (10%)
Query: 14 KGSGPGARSSHAITIVGQKVYAFGGEFTPRVP--VDNNLHVFDLETLTWSVADVTGDVPP 71
K S R SH + +Y GG V V N+ V+D T TW+ +
Sbjct: 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIE 189
Query: 72 PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAA 131
R + V I+ GG++G L+ + +D + N+W ++S P AA
Sbjct: 190 ARKNHGLVFVKDKIFAVGGQNGLGG-LDNVEYYDIKLNEWKMVS---PMPWKGVTVKCAA 245
Query: 132 DDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVV 189
VY+ G GRL + ++ KW+ N K R P VT I VV
Sbjct: 246 VGSIVYVLAGFQGVGRLGHILEYNTETDKWVA------NSKVRAFP---VTSCLICVV 294
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 118/313 (37%), Gaps = 35/313 (11%)
Query: 17 GPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGV 76
GP R+ V V FG + +P V+ +D +T WS + R V
Sbjct: 4 GPRTRARLGANEVLLVVGGFGSQQSPIDVVEK----YDPKTQEWSFLP---SITRKRRYV 56
Query: 77 TMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHV 136
++ IY+ GG DG + L+ + D ++ + + R +
Sbjct: 57 ASVSLHDRIYVIGGYDGRSR-LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMI 115
Query: 137 YIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVE 196
Y+ GG S R + +D +W G+ R G GL+V G I+ + G+ G+
Sbjct: 116 YVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAREGAGLVVASGVIYCLGGYDGLN 172
Query: 197 V-DDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKF 255
+ + V +DP W V T RS + HI V GG + L +
Sbjct: 173 ILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSV----- 224
Query: 256 AGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLD 315
E Y++ T++ WT PR + A LRG + + Y GNS L
Sbjct: 225 --EAYNIRTDS--WTT------VTSMTTPRCYVG-ATVLRGRLYAIAGYDGNSL----LS 269
Query: 316 DIYFFTPCLDGIE 328
I + P +D E
Sbjct: 270 SIECYDPIIDSWE 282
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 103 SFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLND------LWGFDV 156
++D N+ L + + P R++ S VY+ GG V D + D
Sbjct: 28 AYDPMENECYLTALAEQIP--RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDN 85
Query: 157 VDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGF---AGVEVDDVHCFDPAHAQWAQV 213
V +W+ P R GL KI+VV G +D V C+DP A+W++V
Sbjct: 86 VSSEWVGLPPLPS---ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142
Query: 214 ETSGEKPTARSVFSTVGIGKHIVVYGGEVD 243
+ K +V S G+ I GG+ D
Sbjct: 143 KNLPIKVYGHNVISHNGM---IYCLGGKTD 169
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 75/206 (36%), Gaps = 23/206 (11%)
Query: 18 PGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVT 77
P AR + V K+Y G+ +++ +D WS ++P G
Sbjct: 97 PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE---VKNLPIKVYGHN 153
Query: 78 MAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPH--RSYHSTAADDRH 135
+ + IY GG+ K N ++ ++ + W D P RS A
Sbjct: 154 VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-----DLAPMKTPRSMFGVAIHKGK 208
Query: 136 VYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV 195
+ I GG G + FD+ KW E + R L+ G ++ + GFA +
Sbjct: 209 IVIAGGVTEDGLSASVEAFDLKTNKW---EVMTEFPQERSSISLVSLAGSLYAIGGFAMI 265
Query: 196 ----------EVDDVHCFDPAHAQWA 211
EV+D+ ++ +WA
Sbjct: 266 QLESKEFAPTEVNDIWKYEDDKKEWA 291
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Query: 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHT--IYMFGGRDGTHKELNELYSFD 105
+++ +D + W +D P P V + H +Y+ GG+ K LN++ +D
Sbjct: 117 DSVMCYDRLSFKWGESD-----PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYD 171
Query: 106 TRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYP 165
+ +W L+ RS D + + G +G + + + D KW +
Sbjct: 172 PKKFEWKELAPMQTA---RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228
Query: 166 SAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVD 198
+ + R L+ G ++ + GFA +E +
Sbjct: 229 AFPQE---RSSLSLVSLVGTLYAIGGFATLETE 258
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 33 VYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTM--AAV--GHTIYMF 88
VY GG+ + R + N + V+D + W ++ P + ++ A V G I
Sbjct: 151 VYVIGGKGSDRKCL-NKMCVYDPKKFEWK------ELAPMQTARSLFGATVHDGRIIVAA 203
Query: 89 GGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCG----- 143
G D E+YS N+W +A P RS S + +Y GG
Sbjct: 204 GVTDTGLTSSAEVYSITD--NKWAPF---EAFPQERSSLSLVSLVGTLYAIGGFATLETE 258
Query: 144 ----VSGRLNDLWGFDVVDRKW 161
V LND+W ++ ++KW
Sbjct: 259 SGELVPTELNDIWRYNEEEKKW 280
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 18 PGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHV----FDLETLTWSVADVTGDVPPPR 73
P R + + G V+ GG RV L + D++ + S + +VP R
Sbjct: 385 PINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVS----SSEVPVAR 440
Query: 74 VGVTMAAV--GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAA 131
+ T + + + + GGR H+ L++ + FD +T +W+++ + H + +A
Sbjct: 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS----HTRFRHSAC 496
Query: 132 D--DRHVYIFGG 141
D +V I GG
Sbjct: 497 SLPDGNVLILGG 508
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 65 VTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTN--QWTLLSNGDAGPP 122
V + P P T A T+Y+ G GT Y DT+ +WT L+ GP
Sbjct: 2 VLPETPVPFKSGTGAIDNDTVYIGLGSAGT-----AWYKLDTQAKDKKWTALAAFPGGP- 55
Query: 123 HRSYHSTAADDRHVYIFGGCGVSGR-----LNDLWGFDVVDRKWIQYPSAGENCKGRGGP 177
R ++A D ++Y+FGG G + ND+ ++ W++ S G G
Sbjct: 56 -RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSHAP--XGXAGH 112
Query: 178 GLIVTQGKIWVVYG 191
V GK +V G
Sbjct: 113 VTFVHNGKAYVTGG 126
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 72 PRVGVTMAAVGHTIYMFGG----RDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127
PR T A + +Y+FGG +G + N+++ ++ +TN W L + P + H
Sbjct: 55 PRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXS--HAPXGXAGH 112
Query: 128 STAADDRHVYIFGGCG---VSGRLNDL 151
T + Y+ GG +G DL
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDL 139
>pdb|1S5L|B Chain B, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|BB Chain b, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1W5C|B Chain B, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|H Chain H, Photosystem Ii From Thermosynechococcus Elongatus
pdb|2AXT|B Chain B, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|BB Chain b, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|B Chain B, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|B Chain B, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
pdb|3KZI|B Chain B, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|B Chain B, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|B Chain B, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|B Chain B, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|N Chain N, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4IXQ|B Chain B, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|BB Chain b, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|B Chain B, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|BB Chain b, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 510
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 222 ARSVFSTVGIGKHIVVYGGEV------DPSDLGHLGAGKFAGELYSLDTETLVWTRWDDG 275
A S +S G + YGGE+ DP + GE++ DTETL DG
Sbjct: 386 AESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLN----SDG 441
Query: 276 PGSDHHPGPRGWCAFA 291
PRGW FA
Sbjct: 442 ---IFRTSPRGWFTFA 454
>pdb|3ARC|B Chain B, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
pdb|3ARC|BB Chain b, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
Length = 504
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 222 ARSVFSTVGIGKHIVVYGGEV------DPSDLGHLGAGKFAGELYSLDTETLVWTRWDDG 275
A S +S G + YGGE+ DP + GE++ DTETL DG
Sbjct: 385 AESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLN----SDG 440
Query: 276 PGSDHHPGPRGWCAFA 291
PRGW FA
Sbjct: 441 ---IFRTSPRGWFTFA 453
>pdb|3A0B|B Chain B, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|BB Chain b, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|B Chain B, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|BB Chain b, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 488
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 222 ARSVFSTVGIGKHIVVYGGEV------DPSDLGHLGAGKFAGELYSLDTETLVWTRWDDG 275
A S +S G + YGGE+ DP + GE++ DTETL DG
Sbjct: 385 AESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLN----SDG 440
Query: 276 PGSDHHPGPRGWCAFA 291
PRGW FA
Sbjct: 441 ---IFRTSPRGWFTFA 453
>pdb|1YUM|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUN|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUN|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
Length = 242
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 231 IGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLV 268
+GK I ++GG DP +GH+ + E ++LD L+
Sbjct: 21 MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLL 58
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 3 SAKGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVF 53
SA+G + LD++GS AR + + + G++V GG+ VP + ++++
Sbjct: 191 SARG--VMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLL 239
>pdb|1YUL|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
Length = 242
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 231 IGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLV 268
+GK I ++GG DP +GH + E ++LD L+
Sbjct: 21 MGKRIGLFGGTFDPVHIGHXRSAVEXAEQFALDELRLL 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,909,687
Number of Sequences: 62578
Number of extensions: 649603
Number of successful extensions: 1120
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 29
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)