Query 020245
Match_columns 329
No_of_seqs 181 out of 2122
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 08:11:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 1.7E-52 3.7E-57 374.2 39.5 319 5-324 150-469 (470)
2 PLN02153 epithiospecifier prot 100.0 1.4E-51 3E-56 356.2 39.3 319 2-324 3-340 (341)
3 KOG4441 Proteins containing BT 100.0 1.9E-45 4E-50 332.5 28.0 279 17-329 272-552 (571)
4 PLN02193 nitrile-specifier pro 100.0 5.5E-43 1.2E-47 313.0 34.1 287 23-329 113-416 (470)
5 PHA02713 hypothetical protein; 100.0 6E-43 1.3E-47 317.7 28.4 248 48-329 272-539 (557)
6 KOG4441 Proteins containing BT 100.0 1.5E-42 3.2E-47 313.7 27.2 253 3-287 308-562 (571)
7 KOG4693 Uncharacterized conser 100.0 9.6E-43 2.1E-47 270.2 22.1 286 7-309 3-313 (392)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-41 3.8E-46 294.3 31.8 280 16-322 3-345 (346)
9 PRK14131 N-acetylneuraminic ac 100.0 2E-41 4.4E-46 295.8 30.6 294 6-328 17-373 (376)
10 PLN02153 epithiospecifier prot 100.0 9.4E-41 2E-45 288.7 30.8 266 56-329 5-290 (341)
11 PHA02713 hypothetical protein; 100.0 1.9E-41 4.2E-46 307.8 27.2 243 3-274 279-542 (557)
12 TIGR03548 mutarot_permut cycli 100.0 9.2E-41 2E-45 286.8 30.0 281 19-318 2-323 (323)
13 KOG4693 Uncharacterized conser 100.0 1.7E-40 3.6E-45 257.8 20.0 240 3-243 51-313 (392)
14 KOG0379 Kelch repeat-containin 100.0 8.8E-39 1.9E-43 285.0 29.6 300 13-322 53-356 (482)
15 PHA03098 kelch-like protein; P 100.0 4E-38 8.6E-43 288.5 27.7 264 31-328 251-516 (534)
16 PHA03098 kelch-like protein; P 100.0 3.1E-37 6.8E-42 282.6 28.6 231 21-274 285-520 (534)
17 KOG4152 Host cell transcriptio 100.0 2.5E-37 5.5E-42 259.9 21.3 311 6-323 17-363 (830)
18 KOG1230 Protein containing rep 100.0 1.3E-36 2.8E-41 249.3 19.2 257 15-273 61-348 (521)
19 PHA02790 Kelch-like protein; P 100.0 7.1E-35 1.5E-39 261.5 28.3 212 26-273 267-478 (480)
20 PHA02790 Kelch-like protein; P 100.0 3.9E-35 8.5E-40 263.2 25.9 209 78-328 267-475 (480)
21 TIGR03548 mutarot_permut cycli 100.0 7.7E-35 1.7E-39 250.1 26.1 226 7-244 52-315 (323)
22 KOG0379 Kelch repeat-containin 100.0 5.8E-35 1.2E-39 260.6 25.4 249 66-329 54-307 (482)
23 KOG1230 Protein containing rep 100.0 1.5E-35 3.3E-40 243.1 18.8 253 69-329 63-346 (521)
24 TIGR03547 muta_rot_YjhT mutatr 100.0 3.8E-34 8.1E-39 248.4 27.8 242 4-264 39-345 (346)
25 PRK14131 N-acetylneuraminic ac 100.0 9.9E-34 2.1E-38 247.5 28.2 248 5-271 61-374 (376)
26 KOG4152 Host cell transcriptio 100.0 8.6E-30 1.9E-34 214.7 17.2 253 57-328 16-307 (830)
27 COG3055 Uncharacterized protei 99.9 1.1E-23 2.4E-28 171.2 21.6 290 14-327 30-378 (381)
28 COG3055 Uncharacterized protei 99.9 7.3E-20 1.6E-24 149.1 21.7 245 5-268 69-377 (381)
29 KOG2437 Muskelin [Signal trans 99.8 1.1E-19 2.4E-24 153.7 2.1 311 5-323 238-612 (723)
30 KOG2437 Muskelin [Signal trans 99.7 1E-16 2.2E-21 135.9 7.5 261 57-328 238-539 (723)
31 PF13964 Kelch_6: Kelch motif 99.3 6E-12 1.3E-16 76.1 6.6 50 72-124 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.3 2.3E-11 5E-16 73.5 6.2 50 20-73 1-50 (50)
33 PF03089 RAG2: Recombination a 99.1 1.1E-07 2.4E-12 76.1 22.4 228 84-324 40-303 (337)
34 PF01344 Kelch_1: Kelch motif; 99.1 2.3E-10 5E-15 68.2 4.9 46 72-117 1-46 (47)
35 PF13415 Kelch_3: Galactose ox 99.1 4.6E-10 9.9E-15 67.4 6.0 49 30-81 1-49 (49)
36 PF01344 Kelch_1: Kelch motif; 99.1 4E-10 8.6E-15 67.2 5.1 45 123-167 1-46 (47)
37 PF13415 Kelch_3: Galactose ox 99.0 8.4E-10 1.8E-14 66.2 5.8 48 82-132 1-49 (49)
38 PF07646 Kelch_2: Kelch motif; 99.0 1.1E-09 2.4E-14 65.7 6.3 46 72-117 1-48 (49)
39 PF13418 Kelch_4: Galactose ox 99.0 7.3E-10 1.6E-14 66.6 4.3 46 72-117 1-47 (49)
40 PF07646 Kelch_2: Kelch motif; 99.0 2.1E-09 4.6E-14 64.4 6.1 47 20-66 1-48 (49)
41 PF13418 Kelch_4: Galactose ox 98.9 1.7E-09 3.7E-14 65.0 4.4 46 123-168 1-48 (49)
42 PLN02772 guanylate kinase 98.9 1.4E-08 3E-13 86.9 11.0 87 70-158 22-109 (398)
43 PLN02772 guanylate kinase 98.9 2E-08 4.2E-13 86.0 11.1 88 18-109 22-110 (398)
44 PF13854 Kelch_5: Kelch motif 98.9 7.5E-09 1.6E-13 59.6 5.5 41 17-57 1-41 (42)
45 PF13854 Kelch_5: Kelch motif 98.8 2.3E-08 5.1E-13 57.5 5.4 41 69-109 1-42 (42)
46 TIGR01640 F_box_assoc_1 F-box 98.7 1.9E-05 4.2E-10 64.6 22.7 205 48-267 14-230 (230)
47 smart00612 Kelch Kelch domain. 98.7 4.1E-08 8.9E-13 58.4 5.0 47 135-184 1-47 (47)
48 smart00612 Kelch Kelch domain. 98.6 4.7E-08 1E-12 58.1 4.4 47 84-134 1-47 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 98.6 1.6E-05 3.5E-10 64.3 17.8 146 50-215 48-207 (243)
50 TIGR01640 F_box_assoc_1 F-box 98.5 0.00014 3E-09 59.6 21.4 202 99-325 14-230 (230)
51 PF07250 Glyoxal_oxid_N: Glyox 98.5 4.9E-05 1.1E-09 61.6 18.1 150 98-274 45-207 (243)
52 PF03089 RAG2: Recombination a 98.4 4.7E-05 1E-09 61.5 15.5 170 19-195 20-231 (337)
53 PRK11138 outer membrane biogen 98.3 0.003 6.4E-08 56.2 27.8 199 25-271 64-282 (394)
54 PRK11138 outer membrane biogen 98.0 0.0095 2.1E-07 53.0 27.4 193 23-271 113-320 (394)
55 TIGR03300 assembly_YfgL outer 97.7 0.03 6.6E-07 49.5 26.9 194 24-271 59-267 (377)
56 PRK13684 Ycf48-like protein; P 97.6 0.04 8.7E-07 47.7 23.2 240 6-307 76-322 (334)
57 PF14870 PSII_BNR: Photosynthe 97.6 0.036 7.8E-07 46.9 24.3 244 3-308 3-253 (302)
58 PF14870 PSII_BNR: Photosynthe 97.6 0.036 7.8E-07 46.9 20.7 243 6-306 47-294 (302)
59 PF12768 Rax2: Cortical protei 97.3 0.038 8.1E-07 46.3 16.8 112 97-215 14-130 (281)
60 cd00094 HX Hemopexin-like repe 97.2 0.064 1.4E-06 42.5 17.0 154 24-209 10-178 (194)
61 PF02191 OLF: Olfactomedin-lik 97.2 0.084 1.8E-06 43.5 19.0 187 30-239 30-237 (250)
62 PF08450 SGL: SMP-30/Gluconola 97.2 0.088 1.9E-06 43.4 22.6 199 30-274 11-222 (246)
63 PF12768 Rax2: Cortical protei 97.2 0.015 3.3E-07 48.5 13.4 112 47-166 15-130 (281)
64 PRK13684 Ycf48-like protein; P 97.1 0.16 3.5E-06 44.0 24.4 237 4-307 33-279 (334)
65 PF07893 DUF1668: Protein of u 97.0 0.06 1.3E-06 46.8 16.1 125 81-220 75-220 (342)
66 PF07893 DUF1668: Protein of u 97.0 0.043 9.3E-07 47.7 14.6 123 29-167 75-217 (342)
67 KOG2055 WD40 repeat protein [G 96.9 0.22 4.8E-06 43.5 17.5 153 32-212 226-380 (514)
68 PLN00033 photosystem II stabil 96.8 0.33 7.2E-06 43.0 24.9 242 6-306 120-389 (398)
69 TIGR03300 assembly_YfgL outer 96.8 0.33 7.2E-06 42.9 27.5 190 26-271 101-305 (377)
70 PF13360 PQQ_2: PQQ-like domai 96.7 0.24 5.1E-06 40.4 29.3 213 48-326 3-233 (238)
71 cd00094 HX Hemopexin-like repe 96.7 0.24 5.1E-06 39.3 16.1 153 130-325 13-177 (194)
72 KOG2055 WD40 repeat protein [G 96.5 0.089 1.9E-06 45.9 12.8 154 133-327 224-378 (514)
73 PF13360 PQQ_2: PQQ-like domai 96.1 0.6 1.3E-05 38.0 27.8 185 28-268 34-233 (238)
74 smart00284 OLF Olfactomedin-li 96.1 0.65 1.4E-05 38.2 19.5 193 30-239 34-242 (255)
75 PF08450 SGL: SMP-30/Gluconola 96.0 0.74 1.6E-05 37.9 17.4 162 30-214 51-221 (246)
76 PLN00033 photosystem II stabil 95.8 1.3 2.8E-05 39.4 26.5 243 7-307 76-347 (398)
77 PF02897 Peptidase_S9_N: Proly 95.8 1.4 3E-05 39.5 21.5 259 30-328 134-409 (414)
78 TIGR03866 PQQ_ABC_repeats PQQ- 95.7 1.1 2.3E-05 37.7 27.3 144 32-209 2-148 (300)
79 PF05096 Glu_cyclase_2: Glutam 95.7 0.46 1E-05 39.1 12.5 106 132-267 54-159 (264)
80 TIGR03866 PQQ_ABC_repeats PQQ- 95.3 1.5 3.2E-05 36.8 25.3 145 32-210 44-191 (300)
81 COG4946 Uncharacterized protei 95.3 2 4.3E-05 38.2 17.9 185 94-329 102-301 (668)
82 KOG0310 Conserved WD40 repeat- 95.2 2.1 4.6E-05 37.9 16.6 214 30-309 79-301 (487)
83 cd00200 WD40 WD40 domain, foun 95.1 1.5 3.3E-05 35.9 23.8 144 30-208 20-167 (289)
84 PRK05137 tolB translocation pr 94.7 3.2 6.9E-05 37.5 27.0 192 48-274 182-375 (435)
85 PF05096 Glu_cyclase_2: Glutam 94.6 2.2 4.7E-05 35.3 18.1 157 29-214 54-211 (264)
86 PRK04792 tolB translocation pr 94.6 3.4 7.4E-05 37.5 23.6 149 98-274 241-391 (448)
87 COG4257 Vgb Streptogramin lyas 94.6 2.3 4.9E-05 35.2 20.2 189 48-274 124-314 (353)
88 COG4257 Vgb Streptogramin lyas 94.4 2.5 5.5E-05 34.9 17.6 225 48-327 83-309 (353)
89 PF12217 End_beta_propel: Cata 93.9 3 6.4E-05 34.1 19.2 216 21-243 75-335 (367)
90 cd00216 PQQ_DH Dehydrogenases 93.8 5.4 0.00012 36.8 23.9 125 25-165 56-193 (488)
91 COG4946 Uncharacterized protei 93.8 4.7 0.0001 36.0 22.7 102 149-274 382-486 (668)
92 PF08268 FBA_3: F-box associat 93.6 1.4 3E-05 32.2 9.9 85 80-166 3-89 (129)
93 PF03178 CPSF_A: CPSF A subuni 93.5 4.5 9.7E-05 34.8 15.7 138 83-239 42-190 (321)
94 PRK04792 tolB translocation pr 93.3 6.3 0.00014 35.8 22.8 148 48-214 242-390 (448)
95 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.2 7.2 0.00016 36.3 23.7 126 24-165 63-199 (527)
96 PRK00178 tolB translocation pr 93.1 6.4 0.00014 35.5 22.1 149 48-215 223-372 (430)
97 TIGR02800 propeller_TolB tol-p 92.9 6.7 0.00015 35.1 23.6 147 48-214 214-362 (417)
98 PF10282 Lactonase: Lactonase, 92.8 6.1 0.00013 34.5 21.2 208 30-274 48-286 (345)
99 PRK05137 tolB translocation pr 92.8 7.3 0.00016 35.2 21.8 194 48-273 226-420 (435)
100 PF08268 FBA_3: F-box associat 92.6 3 6.5E-05 30.4 13.1 84 131-215 3-89 (129)
101 PTZ00421 coronin; Provisional 92.4 8.8 0.00019 35.4 19.9 63 134-209 138-201 (493)
102 PRK04922 tolB translocation pr 92.3 8.3 0.00018 34.9 23.0 189 48-273 228-419 (433)
103 PRK00178 tolB translocation pr 92.2 8.5 0.00018 34.7 26.3 148 98-274 222-372 (430)
104 cd00200 WD40 WD40 domain, foun 91.8 6.1 0.00013 32.2 23.0 146 30-209 62-210 (289)
105 PRK04922 tolB translocation pr 91.6 10 0.00022 34.3 25.9 147 98-274 227-377 (433)
106 COG2706 3-carboxymuconate cycl 91.3 8.7 0.00019 32.9 26.3 175 32-221 53-238 (346)
107 PTZ00421 coronin; Provisional 90.5 14 0.00031 34.0 21.6 108 83-208 138-247 (493)
108 PF10282 Lactonase: Lactonase, 90.4 11 0.00025 32.8 22.3 234 49-322 16-274 (345)
109 PF03178 CPSF_A: CPSF A subuni 90.4 11 0.00024 32.5 16.3 131 134-297 42-184 (321)
110 PRK03629 tolB translocation pr 90.2 14 0.0003 33.4 21.9 191 48-273 223-414 (429)
111 KOG2048 WD40 repeat protein [G 90.2 16 0.00035 34.1 22.0 222 7-274 280-514 (691)
112 PRK11028 6-phosphogluconolacto 89.9 12 0.00026 32.3 25.3 146 32-207 3-157 (330)
113 TIGR02800 propeller_TolB tol-p 89.8 14 0.00031 33.0 25.2 147 99-274 214-363 (417)
114 PF02897 Peptidase_S9_N: Proly 89.8 14 0.00031 33.0 19.0 150 98-273 251-412 (414)
115 PF02239 Cytochrom_D1: Cytochr 89.2 15 0.00033 32.4 13.4 239 48-327 100-351 (369)
116 KOG0649 WD40 repeat protein [G 89.1 11 0.00024 30.7 17.5 155 59-239 100-263 (325)
117 COG4447 Uncharacterized protei 88.8 13 0.00027 31.0 11.7 156 58-240 32-189 (339)
118 PRK04043 tolB translocation pr 88.3 19 0.00041 32.4 22.2 190 48-274 213-409 (419)
119 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.0 26 0.00057 32.6 14.6 123 76-212 63-197 (527)
120 KOG0310 Conserved WD40 repeat- 86.4 24 0.00052 31.6 16.6 179 29-242 121-300 (487)
121 PRK11028 6-phosphogluconolacto 86.1 21 0.00046 30.7 25.9 95 48-158 57-157 (330)
122 PF14583 Pectate_lyase22: Olig 86.1 23 0.00051 31.2 14.7 210 48-273 102-336 (386)
123 cd00216 PQQ_DH Dehydrogenases 85.6 30 0.00065 31.9 27.7 79 27-114 106-192 (488)
124 PRK03629 tolB translocation pr 84.9 30 0.00064 31.3 26.4 149 98-274 222-372 (429)
125 PLN00181 protein SPA1-RELATED; 84.8 43 0.00093 33.1 23.7 100 83-208 545-650 (793)
126 KOG3545 Olfactomedin and relat 83.9 22 0.00048 29.1 15.9 187 30-239 30-236 (249)
127 PRK02889 tolB translocation pr 82.6 37 0.0008 30.7 24.5 148 98-274 219-369 (427)
128 PRK04043 tolB translocation pr 81.4 41 0.00088 30.4 20.1 151 99-274 213-366 (419)
129 smart00284 OLF Olfactomedin-li 81.2 30 0.00065 28.7 18.4 193 82-304 34-241 (255)
130 KOG4378 Nuclear protein COP1 [ 80.4 45 0.00098 30.3 12.3 89 150-267 188-282 (673)
131 PF06433 Me-amine-dh_H: Methyl 79.4 41 0.00089 29.2 12.2 123 31-167 3-136 (342)
132 PRK02889 tolB translocation pr 79.1 49 0.0011 29.9 23.4 147 48-214 220-368 (427)
133 KOG0316 Conserved WD40 repeat- 78.9 34 0.00073 27.9 17.6 93 48-160 81-176 (307)
134 KOG2321 WD40 repeat protein [G 78.3 33 0.00071 31.7 10.2 127 18-167 131-268 (703)
135 PRK01742 tolB translocation pr 77.1 56 0.0012 29.5 20.3 161 48-241 228-391 (429)
136 PLN03215 ascorbic acid mannose 76.8 53 0.0011 29.0 13.7 105 49-168 183-305 (373)
137 PLN00181 protein SPA1-RELATED; 76.3 84 0.0018 31.1 23.9 99 82-207 587-691 (793)
138 KOG2321 WD40 repeat protein [G 76.2 36 0.00077 31.5 9.8 116 182-325 144-260 (703)
139 KOG0649 WD40 repeat protein [G 75.7 43 0.00093 27.4 15.0 91 109-213 99-193 (325)
140 KOG0281 Beta-TrCP (transducin 74.7 56 0.0012 28.3 10.5 99 124-242 320-419 (499)
141 KOG0316 Conserved WD40 repeat- 74.2 47 0.001 27.1 14.0 134 48-209 39-176 (307)
142 TIGR02658 TTQ_MADH_Hv methylam 73.3 64 0.0014 28.3 26.9 121 30-163 12-142 (352)
143 PRK02888 nitrous-oxide reducta 72.5 90 0.002 29.7 15.7 54 257-324 296-352 (635)
144 COG4447 Uncharacterized protei 71.9 59 0.0013 27.3 13.7 120 23-168 47-167 (339)
145 PLN02919 haloacid dehalogenase 70.7 1.3E+02 0.0029 30.9 31.4 254 30-326 579-891 (1057)
146 KOG1332 Vesicle coat complex C 70.2 60 0.0013 26.7 13.6 57 202-274 239-296 (299)
147 PF02191 OLF: Olfactomedin-lik 69.7 63 0.0014 26.8 18.0 157 17-190 65-237 (250)
148 KOG0299 U3 snoRNP-associated p 69.1 87 0.0019 28.1 16.9 129 29-195 212-349 (479)
149 PF13088 BNR_2: BNR repeat-lik 68.0 69 0.0015 26.6 15.3 226 6-237 30-275 (275)
150 COG4880 Secreted protein conta 67.8 92 0.002 27.9 15.4 80 21-108 377-458 (603)
151 PLN02919 haloacid dehalogenase 67.8 1.5E+02 0.0033 30.5 25.7 158 82-268 694-891 (1057)
152 PLN03215 ascorbic acid mannose 65.5 98 0.0021 27.4 14.5 98 108-217 189-305 (373)
153 PRK01742 tolB translocation pr 64.6 1.1E+02 0.0024 27.6 24.1 141 98-274 227-370 (429)
154 COG0823 TolB Periplasmic compo 64.5 1.1E+02 0.0024 27.7 14.6 110 95-215 258-368 (425)
155 PF13570 PQQ_3: PQQ-like domai 64.3 22 0.00047 19.5 4.5 37 7-57 4-40 (40)
156 PF12217 End_beta_propel: Cata 63.8 85 0.0018 26.1 14.3 119 20-142 135-258 (367)
157 KOG0266 WD40 repeat-containing 63.5 1.2E+02 0.0026 27.7 18.3 185 48-267 225-411 (456)
158 KOG0266 WD40 repeat-containing 63.1 1.2E+02 0.0027 27.7 19.6 96 99-210 225-322 (456)
159 KOG0278 Serine/threonine kinas 62.3 89 0.0019 25.8 13.1 133 48-205 165-298 (334)
160 PF15525 DUF4652: Domain of un 62.2 40 0.00087 26.4 6.3 66 256-327 87-152 (200)
161 TIGR03074 PQQ_membr_DH membran 60.9 1.8E+02 0.0038 28.8 21.8 33 24-64 188-222 (764)
162 PF02239 Cytochrom_D1: Cytochr 60.1 1.2E+02 0.0027 26.7 18.4 245 31-325 49-304 (369)
163 KOG0772 Uncharacterized conser 56.9 1.6E+02 0.0035 27.1 16.9 32 292-324 415-446 (641)
164 PF14583 Pectate_lyase22: Olig 55.5 1.5E+02 0.0033 26.3 16.7 232 30-307 46-302 (386)
165 KOG4649 PQQ (pyrrolo-quinoline 54.8 1.3E+02 0.0027 25.2 10.9 63 186-273 25-91 (354)
166 PRK10115 protease 2; Provision 54.6 2.2E+02 0.0047 27.8 25.6 195 97-327 197-398 (686)
167 KOG0281 Beta-TrCP (transducin 54.4 1.5E+02 0.0032 25.8 10.9 158 48-242 217-379 (499)
168 KOG0296 Angio-associated migra 54.2 1.5E+02 0.0033 25.9 14.1 109 133-273 75-186 (399)
169 PF07734 FBA_1: F-box associat 53.9 96 0.0021 23.6 15.0 87 130-216 2-93 (164)
170 PF14781 BBS2_N: Ciliary BBSom 53.3 89 0.0019 23.0 7.1 65 184-271 64-133 (136)
171 PF13088 BNR_2: BNR repeat-lik 52.0 1.4E+02 0.003 24.8 18.1 206 56-274 28-251 (275)
172 PF07734 FBA_1: F-box associat 50.9 1.1E+02 0.0023 23.3 14.4 88 79-168 2-94 (164)
173 PTZ00420 coronin; Provisional 50.6 2.3E+02 0.0049 26.9 21.6 105 84-207 139-249 (568)
174 COG3823 Glutamine cyclotransfe 49.7 1.4E+02 0.003 24.1 9.0 60 128-192 50-109 (262)
175 KOG0291 WD40-repeat-containing 48.2 2.7E+02 0.0059 27.1 22.9 133 30-193 361-499 (893)
176 PF14830 Haemocyan_bet_s: Haem 46.4 21 0.00045 24.8 2.4 25 299-323 37-61 (103)
177 PF11134 Phage_stabilise: Phag 44.5 2.4E+02 0.0053 25.5 11.9 28 84-118 101-128 (469)
178 KOG1036 Mitotic spindle checkp 43.8 2.1E+02 0.0045 24.5 16.1 130 48-208 35-165 (323)
179 KOG3881 Uncharacterized conser 43.2 2.4E+02 0.0051 25.0 12.4 96 98-207 225-321 (412)
180 KOG0282 mRNA splicing factor [ 42.5 1.3E+02 0.0029 27.2 7.2 50 183-242 269-321 (503)
181 PF05262 Borrelia_P83: Borreli 42.5 2.3E+02 0.005 26.2 8.9 88 143-239 369-457 (489)
182 KOG0270 WD40 repeat-containing 42.2 2.6E+02 0.0056 25.2 13.4 86 199-309 353-441 (463)
183 KOG2106 Uncharacterized conser 41.4 2.9E+02 0.0063 25.5 19.9 103 82-204 212-314 (626)
184 PF14312 FG-GAP_2: FG-GAP repe 41.2 74 0.0016 18.6 5.4 28 10-38 6-33 (49)
185 PF08950 DUF1861: Protein of u 41.0 1.9E+02 0.0042 24.3 7.5 61 79-142 33-95 (298)
186 KOG0289 mRNA splicing factor [ 40.8 2.8E+02 0.006 25.1 14.4 120 124-274 348-471 (506)
187 KOG1036 Mitotic spindle checkp 38.7 2.5E+02 0.0054 24.0 11.5 103 132-268 63-166 (323)
188 PF05262 Borrelia_P83: Borreli 35.8 3.4E+02 0.0073 25.2 8.9 69 94-167 370-438 (489)
189 KOG0296 Angio-associated migra 35.4 3.1E+02 0.0067 24.1 22.8 146 30-209 75-223 (399)
190 KOG2048 WD40 repeat protein [G 35.2 4.1E+02 0.0089 25.5 23.4 214 48-309 47-267 (691)
191 COG3823 Glutamine cyclotransfe 33.5 2.6E+02 0.0056 22.6 16.2 161 25-215 50-216 (262)
192 PF03022 MRJP: Major royal jel 32.9 3.1E+02 0.0066 23.3 12.3 81 30-116 11-106 (287)
193 COG3386 Gluconolactonase [Carb 32.5 3.3E+02 0.0071 23.5 25.6 216 48-309 47-278 (307)
194 KOG0278 Serine/threonine kinas 31.9 3E+02 0.0066 22.9 11.1 127 148-310 164-290 (334)
195 TIGR02658 TTQ_MADH_Hv methylam 30.8 3.8E+02 0.0081 23.7 24.4 76 30-113 57-142 (352)
196 PF06433 Me-amine-dh_H: Methyl 30.4 3.7E+02 0.0081 23.5 14.5 49 32-92 108-157 (342)
197 PF15525 DUF4652: Domain of un 29.0 2.9E+02 0.0063 21.8 11.9 67 147-215 86-157 (200)
198 KOG0282 mRNA splicing factor [ 27.7 2.7E+02 0.0059 25.4 6.7 107 30-160 226-333 (503)
199 KOG0263 Transcription initiati 27.7 5.8E+02 0.013 24.8 10.7 96 133-242 545-640 (707)
200 KOG0308 Conserved WD40 repeat- 27.3 5.6E+02 0.012 24.6 8.8 67 182-267 128-203 (735)
201 COG1520 FOG: WD40-like repeat 26.7 4.4E+02 0.0095 23.1 25.4 153 27-212 65-225 (370)
202 KOG0308 Conserved WD40 repeat- 26.1 2.8E+02 0.006 26.5 6.7 67 30-110 129-204 (735)
203 PF09910 DUF2139: Uncharacteri 25.1 4.4E+02 0.0096 22.6 21.6 168 21-206 37-230 (339)
204 COG3386 Gluconolactonase [Carb 24.7 4.5E+02 0.0098 22.6 19.7 172 48-241 85-276 (307)
205 COG0823 TolB Periplasmic compo 24.3 5.4E+02 0.012 23.4 15.0 104 149-274 262-368 (425)
206 KOG0263 Transcription initiati 23.0 7.1E+02 0.015 24.3 10.7 105 30-157 545-649 (707)
207 KOG3881 Uncharacterized conser 22.6 5.5E+02 0.012 22.8 12.5 31 134-167 161-193 (412)
208 smart00155 PLDc Phospholipase 22.3 1.2E+02 0.0026 15.0 2.8 20 224-243 5-24 (28)
209 KOG0291 WD40-repeat-containing 22.0 7.7E+02 0.017 24.3 20.1 147 134-325 319-468 (893)
210 KOG0318 WD40 repeat stress pro 21.7 6.7E+02 0.014 23.4 21.7 66 182-268 453-520 (603)
211 PF13540 RCC1_2: Regulator of 21.5 1.3E+02 0.0028 15.2 2.9 17 22-38 8-25 (30)
212 PRK10115 protease 2; Provision 20.1 8.3E+02 0.018 23.9 23.2 216 25-274 176-403 (686)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.7e-52 Score=374.16 Aligned_cols=319 Identities=50% Similarity=0.990 Sum_probs=270.4
Q ss_pred cceeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCC-CCcceeEEEECC
Q 020245 5 KGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPP-PRVGVTMAAVGH 83 (329)
Q Consensus 5 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~ 83 (329)
.++|.++++.++.|.+|..|++++++++||++||.........+++++||+.+++|+.++.....|. .|..|+++++++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~ 229 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS 229 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC
Confidence 4799999987778999999999999999999999865444455789999999999998776654555 467889999999
Q ss_pred EEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEE
Q 020245 84 TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQ 163 (329)
Q Consensus 84 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~ 163 (329)
+|||+||.. ....++++++||+.+++|+++.+++..|.+|..|+++..+++|||+||......++++++||+.+++|+.
T Consensus 230 ~lYvfGG~~-~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 230 TLYVFGGRD-ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEEECCCC-CCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 999999988 4567899999999999999999887668899999999999999999998877778899999999999999
Q ss_pred ecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccC
Q 020245 164 YPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVD 243 (329)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~ 243 (329)
++.....+.+|..++++.+++++|++||.++...+++++||+.+++|+++...+..|.+|..|++++++++|||+||...
T Consensus 309 ~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~ 388 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIA 388 (470)
T ss_pred CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccC
Confidence 98755556789999999999999999998766678999999999999999877677899999999999999999999876
Q ss_pred CCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecc
Q 020245 244 PSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPC 323 (329)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~ 323 (329)
.....+...+...+++++||+.+++|+.+...+.....|.+|.++++.++.+.+++.|++|||.+..+..++|+|+|++.
T Consensus 389 ~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 389 MDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred CccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence 44333444456778999999999999999863333356888987433344455546699999998878999999999876
Q ss_pred c
Q 020245 324 L 324 (329)
Q Consensus 324 ~ 324 (329)
+
T Consensus 469 ~ 469 (470)
T PLN02193 469 S 469 (470)
T ss_pred C
Confidence 5
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-51 Score=356.20 Aligned_cols=319 Identities=50% Similarity=0.973 Sum_probs=259.5
Q ss_pred CCCcceeEEeccCC-CCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCC-CcceeEE
Q 020245 2 ASAKGTWIKLDQKG-SGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPP-RVGVTMA 79 (329)
Q Consensus 2 ~~~~~~W~~~~~~~-~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~ 79 (329)
|+.+++|.++.... .+|.+|..|++++++++|||+||.........+++++||+.+++|..++.....|.. +.+|+++
T Consensus 3 ~~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 3 PTLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred CccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEE
Confidence 34899999997643 478999999999999999999998654444558999999999999988875434443 4578899
Q ss_pred EECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCC--CCCCCcccceeEeeCCeEEEEcccCCCc------Cccee
Q 020245 80 AVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGD--AGPPHRSYHSTAADDRHVYIFGGCGVSG------RLNDL 151 (329)
Q Consensus 80 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~------~~~~~ 151 (329)
+++++||++||.. .....+++++||+.+++|+.++.+. ..|.+|..|+++..+++|||+||..... .++++
T Consensus 83 ~~~~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 83 AVGTKLYIFGGRD-EKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred EECCEEEEECCCC-CCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 9999999999987 4556789999999999999988652 2378899999999999999999986432 35789
Q ss_pred EEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC---------CcccEEEEeCCCCceEEeeccCCCCCC
Q 020245 152 WGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV---------EVDDVHCFDPAHAQWAQVETSGEKPTA 222 (329)
Q Consensus 152 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~---------~~~~~~~~d~~~~~w~~~~~~~~~p~~ 222 (329)
++||+.+++|+.++.+...+.+|..++++.++++|||+||.... ..+++++||+.+++|+++...+.+|.+
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 99999999999999876556789999999999999999986421 357899999999999999876678899
Q ss_pred cceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEE
Q 020245 223 RSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLL 302 (329)
Q Consensus 223 r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~ 302 (329)
|..|++++++++|||+||........+...+...+++++||+++++|+.+.. .+..|.||..+.++++.+.+++.||
T Consensus 242 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~---~~~~~~pr~~~~~~~~~v~~~~~~~ 318 (341)
T PLN02153 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE---CGEPAMPRGWTAYTTATVYGKNGLL 318 (341)
T ss_pred cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC---CCCCCCCCccccccccccCCcceEE
Confidence 9999999999999999997644322333445567899999999999999975 3334667666445666655535799
Q ss_pred EEcCCCCCCCcccceEEEeccc
Q 020245 303 VYGGNSPSNDRLDDIYFFTPCL 324 (329)
Q Consensus 303 i~GG~~~~~~~~~~v~~~~~~~ 324 (329)
|+||.+..++.++|+|+|+...
T Consensus 319 ~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 319 MHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred EEcCcCCCCccccceEEEeccc
Confidence 9999988778899999998653
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-45 Score=332.53 Aligned_cols=279 Identities=28% Similarity=0.434 Sum_probs=248.5
Q ss_pred CCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCC
Q 020245 17 GPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHK 96 (329)
Q Consensus 17 ~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 96 (329)
++.+|....- ...+.||++||... .....+.+..||+.++.|..+.. +|.+|..+++++++++||++||.+....
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~-~~~~~~~ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~ 346 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNR-QGQSLRSVECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSD 346 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCC-CCcccceeEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCc
Confidence 3444444433 45679999999875 23445899999999999999888 6799999999999999999999995567
Q ss_pred CCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 97 ELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 97 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
.++.+++||+.+++|+.+++| ..+|..++++.+++.||++||.++...++++++||+.+++|+.++++ +.+|+.
T Consensus 347 ~l~~ve~YD~~~~~W~~~a~M---~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m---~~~r~~ 420 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWTPVAPM---NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM---LTRRSG 420 (571)
T ss_pred ccceEEEecCCCCceeccCCc---cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCC---Ccceee
Confidence 889999999999999999999 79999999999999999999999999999999999999999999999 579999
Q ss_pred cEEEEECCEEEEEeeeCCC--CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCe
Q 020245 177 PGLIVTQGKIWVVYGFAGV--EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGK 254 (329)
Q Consensus 177 ~~~~~~~~~l~v~gG~~~~--~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~ 254 (329)
++++.++++||++||.++. .++.+++|||.+++|+.++ +++.+|.+++++++++.||++||.+.. .
T Consensus 421 ~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~---------~ 488 (571)
T KOG4441|consen 421 HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGT---------S 488 (571)
T ss_pred eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCC---------C
Confidence 9999999999999998766 6799999999999999999 666999999999999999999998763 2
Q ss_pred eeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCccC
Q 020245 255 FAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGIED 329 (329)
Q Consensus 255 ~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~~~ 329 (329)
....+++||+++++|+.+.. ++.+|.. .++++++++ +|++||++.. ..++.|..|||.+++|..
T Consensus 489 ~~~~VE~ydp~~~~W~~v~~------m~~~rs~--~g~~~~~~~--ly~vGG~~~~-~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVAP------MTSPRSA--VGVVVLGGK--LYAVGGFDGN-NNLNTVECYDPETDTWTE 552 (571)
T ss_pred ccceEEEEcCCCCceeEccc------Ccccccc--ccEEEECCE--EEEEecccCc-cccceeEEcCCCCCceee
Confidence 25679999999999999998 8999999 899999966 9999998754 889999999999999963
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.5e-43 Score=312.99 Aligned_cols=287 Identities=20% Similarity=0.312 Sum_probs=237.1
Q ss_pred ceeEEEECCEEEEEcCccCCCCccCCce--EEEeCCC----CcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCC-
Q 020245 23 SHAITIVGQKVYAFGGEFTPRVPVDNNL--HVFDLET----LTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTH- 95 (329)
Q Consensus 23 ~~~~~~~~~~l~~~GG~~~~~~~~~~~~--~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~- 95 (329)
+...+..+++|+.|.|..... .+.+ +.+++.+ ++|..+......|.+|..|+++++++.|||+||.....
T Consensus 113 g~~f~~~~~~ivgf~G~~~~~---~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~ 189 (470)
T PLN02193 113 GVKFVLQGGKIVGFHGRSTDV---LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQ 189 (470)
T ss_pred CCEEEEcCCeEEEEeccCCCc---EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCC
Confidence 334444578999999975432 2444 4456544 79999988766789999999999999999999986322
Q ss_pred CCCCceEEEECCCCcEEEcccCCCCCC-CcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCC
Q 020245 96 KELNELYSFDTRTNQWTLLSNGDAGPP-HRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGR 174 (329)
Q Consensus 96 ~~~~~~~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 174 (329)
...+++++||+.+++|+.++.++..|. .|.+|+++.++++|||+||......++++++||+.+++|+++.++...|.+|
T Consensus 190 ~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R 269 (470)
T PLN02193 190 PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR 269 (470)
T ss_pred CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc
Confidence 345789999999999999887654454 4678899999999999999887777899999999999999999886667899
Q ss_pred CCcEEEEECCEEEEEeeeCCC-CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCC
Q 020245 175 GGPGLIVTQGKIWVVYGFAGV-EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAG 253 (329)
Q Consensus 175 ~~~~~~~~~~~l~v~gG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~ 253 (329)
..|+++..+++|||+||..+. .+.+++.||+.+++|+.+.....+|.+|..|++++++++||++||...
T Consensus 270 ~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g---------- 339 (470)
T PLN02193 270 SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG---------- 339 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC----------
Confidence 999999999999999998765 678899999999999999876567788999999999999999999642
Q ss_pred eeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCC--------CCcccceEEEecccC
Q 020245 254 KFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPS--------NDRLDDIYFFTPCLD 325 (329)
Q Consensus 254 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~--------~~~~~~v~~~~~~~~ 325 (329)
...+++++||+++++|++++. .+..|.+|.. +++++++++ ||||||.... +..++++|+||+.++
T Consensus 340 ~~~~dv~~yD~~t~~W~~~~~---~g~~P~~R~~--~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 340 CEVDDVHYYDPVQDKWTQVET---FGVRPSERSV--FASAAVGKH--IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CccCceEEEECCCCEEEEecc---CCCCCCCcce--eEEEEECCE--EEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 125789999999999999986 3446889998 888899865 9999998641 245689999999999
Q ss_pred CccC
Q 020245 326 GIED 329 (329)
Q Consensus 326 ~~~~ 329 (329)
+|++
T Consensus 413 ~W~~ 416 (470)
T PLN02193 413 QWER 416 (470)
T ss_pred EEEE
Confidence 9973
No 5
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6e-43 Score=317.66 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=218.4
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..+++||+.+++|..++. +|.+|..++++++++.||++||........+.+++||+.+++|..++++ |.+|..+
T Consensus 272 ~~v~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m---~~~R~~~ 345 (557)
T PHA02713 272 PCILVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM---IKNRCRF 345 (557)
T ss_pred CCEEEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC---cchhhce
Confidence 578999999999999886 6788999999999999999999863445678999999999999999998 7899999
Q ss_pred eeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC------------
Q 020245 128 STAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV------------ 195 (329)
Q Consensus 128 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~------------ 195 (329)
+++.++++||++||.+....++++++||+.+++|+.++++ |.+|..++++.++++||++||.++.
T Consensus 346 ~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m---p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM---PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred eEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC---CcccccccEEEECCEEEEEeCCCcccccccccccccc
Confidence 9999999999999987666778999999999999999998 6889999999999999999997642
Q ss_pred -------CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCC-c
Q 020245 196 -------EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTET-L 267 (329)
Q Consensus 196 -------~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~-~ 267 (329)
..+.+++||+.+++|+.++ +++.+|..+++++++++||++||.+... .....+++||+++ +
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~--------~~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEK--------NVKTCIFRYNTNTYN 491 (557)
T ss_pred cccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCC--------ccceeEEEecCCCCC
Confidence 2578999999999999988 6678999999999999999999975321 1234689999999 8
Q ss_pred eeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCccC
Q 020245 268 VWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGIED 329 (329)
Q Consensus 268 ~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~~~ 329 (329)
+|+.++. +|.+|.. +++++++++ ||++||++.. ..+++||+.+++|+.
T Consensus 492 ~W~~~~~------m~~~r~~--~~~~~~~~~--iyv~Gg~~~~----~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 492 GWELITT------TESRLSA--LHTILHDNT--IMMLHCYESY----MLQDTFNVYTYEWNH 539 (557)
T ss_pred CeeEccc------cCccccc--ceeEEECCE--EEEEeeecce----eehhhcCcccccccc
Confidence 9999998 9999998 999999966 9999998752 478999999999973
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=313.72 Aligned_cols=253 Identities=27% Similarity=0.438 Sum_probs=229.9
Q ss_pred CCcceeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC
Q 020245 3 SAKGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG 82 (329)
Q Consensus 3 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 82 (329)
+..+.|..++. +|.+|..+++++++|.||++||.+. +...++++++||+.+++|..+++ ++.+|..+++++++
T Consensus 308 ~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~---M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 308 PKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAP---MNTKRSDFGVAVLD 380 (571)
T ss_pred CCcCcEeecCC---CCcccccccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCC---ccCccccceeEEEC
Confidence 45778999988 7899999999999999999999875 34456999999999999999887 56999999999999
Q ss_pred CEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCc-CcceeEEEEcCCCeE
Q 020245 83 HTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSG-RLNDLWGFDVVDRKW 161 (329)
Q Consensus 83 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~~~~~~~~W 161 (329)
+.||++||.+ ....++++++||+.+++|+.+.++ +.+|.+|+++.++++||++||.+... .++++++|||.+++|
T Consensus 381 g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va~m---~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 381 GKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVAPM---LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred CEEEEEeccc-cccccccEEEecCCCCcccccCCC---CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 9999999999 788899999999999999999999 67899999999999999999988877 899999999999999
Q ss_pred EEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC-CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcC
Q 020245 162 IQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV-EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGG 240 (329)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG 240 (329)
+.++++ +.+|..+.++..+++||++||+++. ....+++||+.+++|+.+. .++.+|..++++++++++|++||
T Consensus 457 ~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 457 TLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA---PMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred eecCCc---ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc---cCccccccccEEEECCEEEEEec
Confidence 999999 6899999999999999999999885 5677999999999999997 66699999999999999999999
Q ss_pred ccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCc
Q 020245 241 EVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGW 287 (329)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~ 287 (329)
.+.. ..++.+..||+.+++|+.... +...|..
T Consensus 531 ~~~~---------~~l~~ve~ydp~~d~W~~~~~------~~~~~~~ 562 (571)
T KOG4441|consen 531 FDGN---------NNLNTVECYDPETDTWTEVTE------PESGRGG 562 (571)
T ss_pred ccCc---------cccceeEEcCCCCCceeeCCC------ccccccC
Confidence 7654 457899999999999999986 4455554
No 7
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=9.6e-43 Score=270.24 Aligned_cols=286 Identities=26% Similarity=0.438 Sum_probs=247.7
Q ss_pred eeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCC---ccCCceEEEeCCCCcEEEEeeCC----------CCCCCC
Q 020245 7 TWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRV---PVDNNLHVFDLETLTWSVADVTG----------DVPPPR 73 (329)
Q Consensus 7 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~---~~~~~~~~~d~~~~~W~~~~~~~----------~~p~~r 73 (329)
.|..--. -.+.|..|+++.++++||-|||+..... .-.-+|..++..+.+|.++++.. ..|..|
T Consensus 3 ~WTVHLe---GGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLE---GGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEec---CCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 5655443 2457999999999999999999864311 11247899999999999888611 146689
Q ss_pred cceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCc--Cccee
Q 020245 74 VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSG--RLNDL 151 (329)
Q Consensus 74 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~--~~~~~ 151 (329)
++|+.+.+++++|+.||.+......+-++.||+++++|.+....+..|..|.+|+++++++.+|+|||+.++. +..++
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence 9999999999999999999767889999999999999999998898899999999999999999999986654 67899
Q ss_pred EEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC----------CcccEEEEeCCCCceEEeeccCCCCC
Q 020245 152 WGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV----------EVDDVHCFDPAHAQWAQVETSGEKPT 221 (329)
Q Consensus 152 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~----------~~~~~~~~d~~~~~w~~~~~~~~~p~ 221 (329)
..+|..|.+|+.+.+...+|.-|.+|+++++++.+||+||..+. ..+.+..+|..++.|......+-.|.
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~ 239 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG 239 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC
Confidence 99999999999999999888999999999999999999997654 34788999999999999988778899
Q ss_pred CcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceE
Q 020245 222 ARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGL 301 (329)
Q Consensus 222 ~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i 301 (329)
.|..|++..++++||+|||++..-+ .-.+++|+||+.+..|..+.. .+.-|.+|.. .++++.++| +
T Consensus 240 GRRSHS~fvYng~~Y~FGGYng~ln-------~HfndLy~FdP~t~~W~~I~~---~Gk~P~aRRR--qC~~v~g~k--v 305 (392)
T KOG4693|consen 240 GRRSHSTFVYNGKMYMFGGYNGTLN-------VHFNDLYCFDPKTSMWSVISV---RGKYPSARRR--QCSVVSGGK--V 305 (392)
T ss_pred cccccceEEEcceEEEecccchhhh-------hhhcceeecccccchheeeec---cCCCCCcccc--eeEEEECCE--E
Confidence 9999999999999999999865422 224799999999999999998 7888999998 899999977 9
Q ss_pred EEEcCCCC
Q 020245 302 LVYGGNSP 309 (329)
Q Consensus 302 ~i~GG~~~ 309 (329)
|+|||...
T Consensus 306 ~LFGGTsP 313 (392)
T KOG4693|consen 306 YLFGGTSP 313 (392)
T ss_pred EEecCCCC
Confidence 99999875
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.8e-41 Score=294.29 Aligned_cols=280 Identities=19% Similarity=0.305 Sum_probs=219.6
Q ss_pred CCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeC--CCCcEEEEeeCCCCC-CCCcceeEEEECCEEEEEcccc
Q 020245 16 SGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDL--ETLTWSVADVTGDVP-PPRVGVTMAAVGHTIYMFGGRD 92 (329)
Q Consensus 16 ~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~ 92 (329)
++|.+|..+++++++++|||+||... +++++||+ .+++|..++. +| .+|..+++++++++||++||..
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~------~~~~~~d~~~~~~~W~~l~~---~p~~~R~~~~~~~~~~~iYv~GG~~ 73 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG------TSWYKLDLKKPSKGWQKIAD---FPGGPRNQAVAAAIDGKLYVFGGIG 73 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC------CeeEEEECCCCCCCceECCC---CCCCCcccceEEEECCEEEEEeCCC
Confidence 57899999999899999999999632 67899996 5788999886 55 4899999999999999999986
Q ss_pred CCC-----CCCCceEEEECCCCcEEEcccCCCCCCCcccceeE-eeCCeEEEEcccCCCc--------------------
Q 020245 93 GTH-----KELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTA-ADDRHVYIFGGCGVSG-------------------- 146 (329)
Q Consensus 93 ~~~-----~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~-------------------- 146 (329)
... ..++++++||+.+++|++++.+ .|.+|.+++++ .++++||++||.....
T Consensus 74 ~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~--~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 74 KANSEGSPQVFDDVYRYDPKKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCCcceecccEEEEECCCCEEecCCCC--CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 321 2568999999999999999742 26778777776 6899999999975321
Q ss_pred --------------CcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC--CcccEEEEe--CCCC
Q 020245 147 --------------RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV--EVDDVHCFD--PAHA 208 (329)
Q Consensus 147 --------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~--~~~~~~~~d--~~~~ 208 (329)
.++++++||+.+++|+.+++++ ..+|..++++.++++|||+||.... ....++.|+ ++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~ 229 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP--FLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKL 229 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccCC--CCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCc
Confidence 1378999999999999999884 2367888889999999999997543 334565565 5677
Q ss_pred ceEEeeccCCCCCCc-------ceeEEEEECCEEEEEcCccCCCCCC---------cCCCCeeeceeEEEEcCCceeEee
Q 020245 209 QWAQVETSGEKPTAR-------SVFSTVGIGKHIVVYGGEVDPSDLG---------HLGAGKFAGELYSLDTETLVWTRW 272 (329)
Q Consensus 209 ~w~~~~~~~~~p~~r-------~~~~~~~~~~~i~i~GG~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~W~~~ 272 (329)
+|+.+..+ |.+| ..|++++++++|||+||.+...... +... .....+++||+++++|+.+
T Consensus 230 ~W~~~~~m---~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 230 EWNKLPPL---PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGL-IKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred eeeecCCC---CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCC-CceeEeeEEEecCCccccc
Confidence 99998844 4443 4566778999999999986321100 0000 1124689999999999999
Q ss_pred cCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEec
Q 020245 273 DDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTP 322 (329)
Q Consensus 273 ~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~ 322 (329)
.. +|.+|.. +++++++++ |||+||.+..+..+++|++|..
T Consensus 306 ~~------lp~~~~~--~~~~~~~~~--iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 306 GK------LPQGLAY--GVSVSWNNG--VLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred CC------CCCCcee--eEEEEcCCE--EEEEeccCCCCCEeeeEEEEEe
Confidence 98 8999987 778888966 9999999887889999998864
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2e-41 Score=295.80 Aligned_cols=294 Identities=18% Similarity=0.296 Sum_probs=226.3
Q ss_pred ceeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCC--CCcEEEEeeCCCCC-CCCcceeEEEEC
Q 020245 6 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLE--TLTWSVADVTGDVP-PPRVGVTMAAVG 82 (329)
Q Consensus 6 ~~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~ 82 (329)
-.++.++. +|.+|..+++++++++|||+||... +.+++||+. +++|..++. +| .+|.++++++++
T Consensus 17 ~~~~~l~~---lP~~~~~~~~~~~~~~iyv~gG~~~------~~~~~~d~~~~~~~W~~l~~---~p~~~r~~~~~v~~~ 84 (376)
T PRK14131 17 ANAEQLPD---LPVPFKNGTGAIDNNTVYVGLGSAG------TSWYKLDLNAPSKGWTKIAA---FPGGPREQAVAAFID 84 (376)
T ss_pred eecccCCC---CCcCccCCeEEEECCEEEEEeCCCC------CeEEEEECCCCCCCeEECCc---CCCCCcccceEEEEC
Confidence 35556654 8999998899999999999999632 468899986 478998876 33 479999999999
Q ss_pred CEEEEEccccC-C----CCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEe-eCCeEEEEcccCCCc----------
Q 020245 83 HTIYMFGGRDG-T----HKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAA-DDRHVYIFGGCGVSG---------- 146 (329)
Q Consensus 83 ~~iyv~GG~~~-~----~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~---------- 146 (329)
++|||+||... . ...++++++||+.+++|+.+++.. |..+.+|+++. .+++||++||.....
T Consensus 85 ~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~--p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~ 162 (376)
T PRK14131 85 GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS--PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAA 162 (376)
T ss_pred CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC--CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhh
Confidence 99999999873 1 134689999999999999998532 66777788776 799999999975320
Q ss_pred ------------------------CcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC--CcccE
Q 020245 147 ------------------------RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV--EVDDV 200 (329)
Q Consensus 147 ------------------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~--~~~~~ 200 (329)
..+++++||+.+++|+.+.+++ ..++..++++.++++|||+||.... ...++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p--~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~ 240 (376)
T PRK14131 163 AGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESP--FLGTAGSAVVIKGNKLWLINGEIKPGLRTDAV 240 (376)
T ss_pred cccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCC--CCCCCcceEEEECCEEEEEeeeECCCcCChhh
Confidence 2478999999999999998874 2367888889999999999997533 33444
Q ss_pred E--EEeCCCCceEEeeccCCCCCCcc--------eeEEEEECCEEEEEcCccCCCCCCcCCCCe--------eeceeEEE
Q 020245 201 H--CFDPAHAQWAQVETSGEKPTARS--------VFSTVGIGKHIVVYGGEVDPSDLGHLGAGK--------FAGELYSL 262 (329)
Q Consensus 201 ~--~~d~~~~~w~~~~~~~~~p~~r~--------~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~--------~~~~~~~~ 262 (329)
+ .||+++++|+.+.. +|.+|. .+.+++++++|||+||.+......+...+. ....+++|
T Consensus 241 ~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 317 (376)
T PRK14131 241 KQGKFTGNNLKWQKLPD---LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY 317 (376)
T ss_pred eEEEecCCCcceeecCC---CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE
Confidence 4 45778899999884 444442 233567899999999986543211111110 11357899
Q ss_pred EcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCcc
Q 020245 263 DTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGIE 328 (329)
Q Consensus 263 d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~~ 328 (329)
|+++++|+.++. +|.+|.. +++++++++ |||+||....+..+++|++|+++.+++.
T Consensus 318 d~~~~~W~~~~~------lp~~r~~--~~av~~~~~--iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 318 ALVNGKWQKVGE------LPQGLAY--GVSVSWNNG--VLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred EecCCcccccCc------CCCCccc--eEEEEeCCE--EEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 999999999987 8999988 788889966 9999998766678999999999987653
No 10
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.4e-41 Score=288.67 Aligned_cols=266 Identities=20% Similarity=0.329 Sum_probs=214.6
Q ss_pred CCCcEEEEeeCC-CCCCCCcceeEEEECCEEEEEccccCC-CCCCCceEEEECCCCcEEEcccCCCCCC-CcccceeEee
Q 020245 56 ETLTWSVADVTG-DVPPPRVGVTMAAVGHTIYMFGGRDGT-HKELNELYSFDTRTNQWTLLSNGDAGPP-HRSYHSTAAD 132 (329)
Q Consensus 56 ~~~~W~~~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~ 132 (329)
....|..+.... .+|.+|..|++++++++|||+||.... ....+++++||+.+++|+++++++..|. .+.+|+++.+
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 567799887753 368899999999999999999998632 3346799999999999999988754343 3457889999
Q ss_pred CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCC--CCCCCCCCcEEEEECCEEEEEeeeCCC-------CcccEEEE
Q 020245 133 DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAG--ENCKGRGGPGLIVTQGKIWVVYGFAGV-------EVDDVHCF 203 (329)
Q Consensus 133 ~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~l~v~gG~~~~-------~~~~~~~~ 203 (329)
+++||+|||......++++++||+.+++|+.++++. ..|.+|..|+++..+++|||+||.... .++++++|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 999999999877777889999999999999998652 125789999999999999999997632 24689999
Q ss_pred eCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCC
Q 020245 204 DPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPG 283 (329)
Q Consensus 204 d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~ 283 (329)
|+.+++|+.+..+...|.+|..|++++++++|||+||.......+.. .....+++++||+++++|++++. .+.+|.
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~-~~~~~~~v~~yd~~~~~W~~~~~---~g~~P~ 240 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGK-SDYESNAVQFFDPASGKWTEVET---TGAKPS 240 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCc-cceecCceEEEEcCCCcEEeccc---cCCCCC
Confidence 99999999998765566889999999999999999997532110000 01225789999999999999986 455788
Q ss_pred CCCcceecccccCCcceEEEEcCCCC--------CCCcccceEEEecccCCccC
Q 020245 284 PRGWCAFAGGLRGGKHGLLVYGGNSP--------SNDRLDDIYFFTPCLDGIED 329 (329)
Q Consensus 284 ~r~~~~~~~~~~~~~~~i~i~GG~~~--------~~~~~~~v~~~~~~~~~~~~ 329 (329)
+|.. +++++++++ ||||||... ....++++|+||+.+++|++
T Consensus 241 ~r~~--~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~ 290 (341)
T PLN02153 241 ARSV--FAHAVVGKY--IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEK 290 (341)
T ss_pred Ccce--eeeEEECCE--EEEECcccCCccccccccccccccEEEEEcCccEEEe
Confidence 9988 889999965 999999742 12456799999999999973
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=307.85 Aligned_cols=243 Identities=17% Similarity=0.254 Sum_probs=212.5
Q ss_pred CCcceeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC
Q 020245 3 SAKGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG 82 (329)
Q Consensus 3 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 82 (329)
+.+++|..+++ +|.+|..+++++++++||++||..... ...+++++||+.+++|..+++ +|.+|..+++++++
T Consensus 279 ~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~-~~~~~v~~Yd~~~n~W~~~~~---m~~~R~~~~~~~~~ 351 (557)
T PHA02713 279 INTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNN-PSLNKVYKINIENKIHVELPP---MIKNRCRFSLAVID 351 (557)
T ss_pred CCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCC-CccceEEEEECCCCeEeeCCC---CcchhhceeEEEEC
Confidence 45678999986 788999999999999999999975322 235889999999999998876 67899999999999
Q ss_pred CEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCc----------------
Q 020245 83 HTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSG---------------- 146 (329)
Q Consensus 83 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~---------------- 146 (329)
++||++||.+ .....+.+++||+.+++|+.++++ |.+|..++++.++++||++||.+...
T Consensus 352 g~IYviGG~~-~~~~~~sve~Ydp~~~~W~~~~~m---p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQN-GTNVERTIECYTMGDDKWKMLPDM---PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcC-CCCCCceEEEEECCCCeEEECCCC---CcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 9999999987 455678899999999999999988 78999999999999999999976421
Q ss_pred --CcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC--CcccEEEEeCCC-CceEEeeccCCCCC
Q 020245 147 --RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV--EVDDVHCFDPAH-AQWAQVETSGEKPT 221 (329)
Q Consensus 147 --~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~--~~~~~~~~d~~~-~~w~~~~~~~~~p~ 221 (329)
.++++++|||.+++|+.++++ +.+|..++++.++++||++||.++. ....+++||+.+ ++|+.+. .+|.
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~---~m~~ 501 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT---TTES 501 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc---ccCc
Confidence 257899999999999999998 6889999999999999999998654 234689999999 8999998 7789
Q ss_pred CcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 222 ARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 222 ~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
+|..+++++++++||++||.+. ...+++||+.+++|+.+..
T Consensus 502 ~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 502 RLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhh
Confidence 9999999999999999999753 2378999999999999886
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=9.2e-41 Score=286.78 Aligned_cols=281 Identities=18% Similarity=0.232 Sum_probs=218.0
Q ss_pred CCCcceeEEEECCEEEEEcCccCCCC--------ccCCceEEEe-CC-CCcEEEEeeCCCCCCCCcceeEEEECCEEEEE
Q 020245 19 GARSSHAITIVGQKVYAFGGEFTPRV--------PVDNNLHVFD-LE-TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMF 88 (329)
Q Consensus 19 ~~r~~~~~~~~~~~l~~~GG~~~~~~--------~~~~~~~~~d-~~-~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~ 88 (329)
..++++.++++++.|||+||.+.++. ...+++++|+ +. +.+|..+.. +|.+|..++++++++.||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~---lp~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ---LPYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc---CCccccceEEEEECCEEEEE
Confidence 35778899999999999999876532 2346788886 32 236888765 77889888889999999999
Q ss_pred ccccCCCCCCCceEEEECCCCcE----EEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEe
Q 020245 89 GGRDGTHKELNELYSFDTRTNQW----TLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQY 164 (329)
Q Consensus 89 GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~ 164 (329)
||.. ....++++++||+.+++| +.++++ |.+|..|+++.++++||++||......++++++||+.+++|+++
T Consensus 79 GG~~-~~~~~~~v~~~d~~~~~w~~~~~~~~~l---p~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~ 154 (323)
T TIGR03548 79 GGSN-SSERFSSVYRITLDESKEELICETIGNL---PFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFEL 154 (323)
T ss_pred cCCC-CCCCceeEEEEEEcCCceeeeeeEcCCC---CcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeEC
Confidence 9987 556678999999999988 555555 78899999999999999999986656678999999999999999
Q ss_pred cCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCC--CCCCcceeEE-EEECCEEEEEcCc
Q 020245 165 PSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGE--KPTARSVFST-VGIGKHIVVYGGE 241 (329)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~--~p~~r~~~~~-~~~~~~i~i~GG~ 241 (329)
++++ ..+|..++++.++++|||+||.++....++++||+++++|+.+..+.. .|..+..++. +..+++|||+||.
T Consensus 155 ~~~p--~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 155 PDFP--GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF 232 (323)
T ss_pred CCCC--CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCc
Confidence 8774 246888888899999999999876555678999999999999986532 3333334443 4447899999998
Q ss_pred cCCCCCC-----------------------cCCCCeeeceeEEEEcCCceeEeecCCCCCCCCC-CCCCcceecccccCC
Q 020245 242 VDPSDLG-----------------------HLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHP-GPRGWCAFAGGLRGG 297 (329)
Q Consensus 242 ~~~~~~~-----------------------~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p-~~r~~~~~~~~~~~~ 297 (329)
+.....+ ......+.+++++||+++++|+.++. +| .+|.. ++++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~------~p~~~r~~--~~~~~~~~ 304 (323)
T TIGR03548 233 NKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN------SPFFARCG--AALLLTGN 304 (323)
T ss_pred CHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc------ccccccCc--hheEEECC
Confidence 6321000 00001234679999999999999986 66 57888 88999996
Q ss_pred cceEEEEcCCCCCCCcccceE
Q 020245 298 KHGLLVYGGNSPSNDRLDDIY 318 (329)
Q Consensus 298 ~~~i~i~GG~~~~~~~~~~v~ 318 (329)
+ ||++||....+.+.+.|+
T Consensus 305 ~--iyv~GG~~~pg~rt~~~~ 323 (323)
T TIGR03548 305 N--IFSINGELKPGVRTPDIY 323 (323)
T ss_pred E--EEEEeccccCCcCCcCcC
Confidence 6 999999987666666553
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=257.79 Aligned_cols=240 Identities=26% Similarity=0.509 Sum_probs=217.2
Q ss_pred CCcceeEEecc----------CCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCC
Q 020245 3 SAKGTWIKLDQ----------KGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPP 72 (329)
Q Consensus 3 ~~~~~W~~~~~----------~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~ 72 (329)
+++.+|.++++ -+-.|-.|++|+.+.+++++||.||.+.....+ |-++.||+.++.|++....+.+|.+
T Consensus 51 a~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaC-N~Ly~fDp~t~~W~~p~v~G~vPga 129 (392)
T KOG4693|consen 51 AENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGAC-NLLYEFDPETNVWKKPEVEGFVPGA 129 (392)
T ss_pred ccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCccccc-ceeeeeccccccccccceeeecCCc
Confidence 56778998865 112466799999999999999999998765555 8999999999999999988889999
Q ss_pred CcceeEEEECCEEEEEccccC-CCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCc-----
Q 020245 73 RVGVTMAAVGHTIYMFGGRDG-THKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSG----- 146 (329)
Q Consensus 73 r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~----- 146 (329)
|-+|+++++++.+|||||+.. ....++++..+|..|.+|+.+.+.+.+|.-|..|+++.+++.+|+|||+.+..
T Consensus 130 RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs 209 (392)
T KOG4693|consen 130 RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHS 209 (392)
T ss_pred cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccc
Confidence 999999999999999999975 45678899999999999999999998889999999999999999999986532
Q ss_pred ----CcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC---CcccEEEEeCCCCceEEeeccCCC
Q 020245 147 ----RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV---EVDDVHCFDPAHAQWAQVETSGEK 219 (329)
Q Consensus 147 ----~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~---~~~~~~~~d~~~~~w~~~~~~~~~ 219 (329)
+.+.+..+|+.|+.|...++.+..|.+|.+|++.+.+++||++||+++. ..+++|.||+.+..|..+...+..
T Consensus 210 ~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 210 IHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred hhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCC
Confidence 5688999999999999999888889999999999999999999999877 679999999999999999999999
Q ss_pred CCCcceeEEEEECCEEEEEcCccC
Q 020245 220 PTARSVFSTVGIGKHIVVYGGEVD 243 (329)
Q Consensus 220 p~~r~~~~~~~~~~~i~i~GG~~~ 243 (329)
|.+|..+++++.+++||+|||..-
T Consensus 290 P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 290 PSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred CCcccceeEEEECCEEEEecCCCC
Confidence 999999999999999999999763
No 14
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=8.8e-39 Score=285.00 Aligned_cols=300 Identities=37% Similarity=0.618 Sum_probs=261.3
Q ss_pred cCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEcccc
Q 020245 13 QKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRD 92 (329)
Q Consensus 13 ~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 92 (329)
..+..|.+|+.|+++++++++|||||..........+++++|..+..|......+..|.+|.+|.+++++++||+|||..
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 34567899999999999999999999876554432369999999999999999988999999999999999999999999
Q ss_pred CCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCc-CcceeEEEEcCCCeEEEecCCCCCC
Q 020245 93 GTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSG-RLNDLWGFDVVDRKWIQYPSAGENC 171 (329)
Q Consensus 93 ~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~ 171 (329)
......++++.||+.|++|..+...+.+|.+|.+|+++.+++++||+||.+... ..+++++||+.+.+|.++...+..|
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P 212 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP 212 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC
Confidence 656668899999999999999999998899999999999999999999988877 8899999999999999999999999
Q ss_pred CCCCCcEEEEECCEEEEEeeeC-CC-CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCc
Q 020245 172 KGRGGPGLIVTQGKIWVVYGFA-GV-EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGH 249 (329)
Q Consensus 172 ~~~~~~~~~~~~~~l~v~gG~~-~~-~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~ 249 (329)
.+|+.|+++..+++++|+||.. ++ .++++|.+|+.+.+|..+...+..|.+|+.|.++..+++++|+||.....
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---- 288 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---- 288 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc----
Confidence 9999999999999999999987 44 78999999999999999998889999999999999999999999976531
Q ss_pred CCCCeeeceeEEEEcCCceeEeecCCCCCC-CCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEec
Q 020245 250 LGAGKFAGELYSLDTETLVWTRWDDGPGSD-HHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTP 322 (329)
Q Consensus 250 ~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~-~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~ 322 (329)
...+.++|.||+++..|..+.. .. ..|.+|..+....+...++..+.++||....+...++++.+..
T Consensus 289 ---~~~l~~~~~l~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (482)
T KOG0379|consen 289 ---QEPLGDLYGLDLETLVWSKVES---VGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQI 356 (482)
T ss_pred ---cccccccccccccccceeeeec---cccccccccccccceeeccCCccceeeecCccccccchhhcccccc
Confidence 0147899999999999999997 33 6788898865666666655667778886655566667765443
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4e-38 Score=288.51 Aligned_cols=264 Identities=18% Similarity=0.206 Sum_probs=218.8
Q ss_pred CEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCc
Q 020245 31 QKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQ 110 (329)
Q Consensus 31 ~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 110 (329)
..+++.||.. .. ...+..|++...+|..++. .| .+..++++++++.||++||........+++++||+.+++
T Consensus 251 ~~~~~~~g~~---~~-~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (534)
T PHA03098 251 SIIYIHITMS---IF-TYNYITNYSPLSEINTIID---IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS 322 (534)
T ss_pred cceEeecccc---hh-hceeeecchhhhhcccccC---cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCe
Confidence 3455555543 11 2456678888888887754 22 245578999999999999998555567899999999999
Q ss_pred EEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEe
Q 020245 111 WTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVY 190 (329)
Q Consensus 111 W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~g 190 (329)
|..++++ |.+|..|+++.++++||++||......++++++||+.+++|+.++++ |.+|..++++.++++||++|
T Consensus 323 W~~~~~~---~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---p~~r~~~~~~~~~~~iYv~G 396 (534)
T PHA03098 323 WNKVPEL---IYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL---IFPRYNPCVVNVNNLIYVIG 396 (534)
T ss_pred eeECCCC---CcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc---CcCCccceEEEECCEEEEEC
Confidence 9999887 78899999999999999999988666788999999999999999988 68899999999999999999
Q ss_pred eeCCC--CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCce
Q 020245 191 GFAGV--EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLV 268 (329)
Q Consensus 191 G~~~~--~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 268 (329)
|.... .++.+++||+.+++|+.+. .+|.+|..|+++.++++||++||...... ....+.+++||+++++
T Consensus 397 G~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 397 GISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDN------IKVYNIVESYNPVTNK 467 (534)
T ss_pred CcCCCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCC------CcccceEEEecCCCCc
Confidence 96533 5688999999999999987 67789999999999999999999754321 1123569999999999
Q ss_pred eEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCcc
Q 020245 269 WTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGIE 328 (329)
Q Consensus 269 W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~~ 328 (329)
|+.++. +|.+|.. +++++++++ ||++||.+.. ...+++++||+.+++|+
T Consensus 468 W~~~~~------~~~~r~~--~~~~~~~~~--iyv~GG~~~~-~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 468 WTELSS------LNFPRIN--ASLCIFNNK--IYVVGGDKYE-YYINEIEVYDDKTNTWT 516 (534)
T ss_pred eeeCCC------CCccccc--ceEEEECCE--EEEEcCCcCC-cccceeEEEeCCCCEEE
Confidence 999987 7888988 788888855 9999998754 44789999999999996
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=282.60 Aligned_cols=231 Identities=20% Similarity=0.313 Sum_probs=200.7
Q ss_pred CcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCc
Q 020245 21 RSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNE 100 (329)
Q Consensus 21 r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 100 (329)
+..+++++++++||++||...... ..+++++||+.+++|..++. +|.+|.++++++++++||++||.. .....++
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~~-~~~~v~~yd~~~~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~ 359 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNL-SVNSVVSYDTKTKSWNKVPE---LIYPRKNPGVTVFNNRIYVIGGIY-NSISLNT 359 (534)
T ss_pred cccceEEEECCEEEEECCCcCCCC-eeccEEEEeCCCCeeeECCC---CCcccccceEEEECCEEEEEeCCC-CCEecce
Confidence 455688889999999999865433 34789999999999988876 668999999999999999999988 5667889
Q ss_pred eEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCC-cCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEE
Q 020245 101 LYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVS-GRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGL 179 (329)
Q Consensus 101 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 179 (329)
+++||+.+++|+.++++ |.+|..++++.++++||++||.... ..++++++||+.+++|+.+.++ |.+|..+++
T Consensus 360 v~~yd~~~~~W~~~~~l---p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~ 433 (534)
T PHA03098 360 VESWKPGESKWREEPPL---IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCA 433 (534)
T ss_pred EEEEcCCCCceeeCCCc---CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC---CccccCceE
Confidence 99999999999999888 7889999999999999999997543 3578999999999999999887 678899999
Q ss_pred EEECCEEEEEeeeCCC----CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCee
Q 020245 180 IVTQGKIWVVYGFAGV----EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKF 255 (329)
Q Consensus 180 ~~~~~~l~v~gG~~~~----~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~ 255 (329)
+..+++||++||.... ..+.+++||+.+++|+.+. .+|.+|..++++.++++||++||.... ..
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~---------~~ 501 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYE---------YY 501 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCC---------cc
Confidence 9999999999997643 2567999999999999987 566889999999999999999997643 22
Q ss_pred eceeEEEEcCCceeEeecC
Q 020245 256 AGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 256 ~~~~~~~d~~~~~W~~~~~ 274 (329)
.+++++||+++++|+.++.
T Consensus 502 ~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 502 INEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred cceeEEEeCCCCEEEecCC
Confidence 5689999999999999986
No 17
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.5e-37 Score=259.88 Aligned_cols=311 Identities=25% Similarity=0.407 Sum_probs=258.3
Q ss_pred ceeEEecc-CCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCE
Q 020245 6 GTWIKLDQ-KGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHT 84 (329)
Q Consensus 6 ~~W~~~~~-~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 84 (329)
-+|+++.. .++.|-+|.+|-++++.+.++||||-++ . ..++++.|+..+++|..-...++.|.+...|.++..+++
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE--G-iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr 93 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE--G-IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR 93 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcc--c-chhhhhhhccccceeecchhcCCCCCchhhcceEecCce
Confidence 48998864 4556889999999999999999999653 2 348999999999999999999999999999999999999
Q ss_pred EEEEccccCCCCCCCceEEEECCCCcEEEcccC----CCCCCCcccceeEeeCCeEEEEcccCCC---------cCccee
Q 020245 85 IYMFGGRDGTHKELNELYSFDTRTNQWTLLSNG----DAGPPHRSYHSTAADDRHVYIFGGCGVS---------GRLNDL 151 (329)
Q Consensus 85 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~----~~~p~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~~~ 151 (329)
||+|||.....++++++|.+......|+++.+. +.+|.+|.+|+...++++.|+|||...+ .+++++
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 999999988889999999988888889888655 5678999999999999999999996432 278999
Q ss_pred EEEEcCCC----eEEEecCCCCCCCCCCCcEEEEE------CCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCC
Q 020245 152 WGFDVVDR----KWIQYPSAGENCKGRGGPGLIVT------QGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPT 221 (329)
Q Consensus 152 ~~~~~~~~----~W~~~~~~~~~~~~~~~~~~~~~------~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~ 221 (329)
|+.++.-+ -|......+..|.+|..|+++++ ..+|||+||..+..+.++|.+|+++.+|.+....+..|.
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~Pl 253 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPL 253 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCC
Confidence 99998854 59988888777899999999876 246999999999999999999999999999998888999
Q ss_pred CcceeEEEEECCEEEEEcCcc-----CCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCC-CCCCCCcceeccccc
Q 020245 222 ARSVFSTVGIGKHIVVYGGEV-----DPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDH-HPGPRGWCAFAGGLR 295 (329)
Q Consensus 222 ~r~~~~~~~~~~~i~i~GG~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~-~p~~r~~~~~~~~~~ 295 (329)
||.-|+++.++++||||||-. ......++..=+-++.+-++++++..|+.+-...+... .|.+|+. |+++.+
T Consensus 254 PRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAG--HCAvAi 331 (830)
T KOG4152|consen 254 PRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAG--HCAVAI 331 (830)
T ss_pred CcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccccc--ceeEEe
Confidence 999999999999999999954 11112222222445678899999999998765332222 7888888 999999
Q ss_pred CCcceEEEEcCCCCC-----C-CcccceEEEecc
Q 020245 296 GGKHGLLVYGGNSPS-----N-DRLDDIYFFTPC 323 (329)
Q Consensus 296 ~~~~~i~i~GG~~~~-----~-~~~~~v~~~~~~ 323 (329)
+.+ +||..|+++- + -...|+|.+|..
T Consensus 332 gtR--lYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 332 GTR--LYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred ccE--EEEEeccchhhHhhccccchhhhhhhccc
Confidence 965 9999999863 2 235577777754
No 18
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=249.30 Aligned_cols=257 Identities=30% Similarity=0.517 Sum_probs=221.4
Q ss_pred CCCCCCCcceeEEEE--CCEEEEEcCcc--CCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC-CEEEEEc
Q 020245 15 GSGPGARSSHAITIV--GQKVYAFGGEF--TPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG-HTIYMFG 89 (329)
Q Consensus 15 ~~~p~~r~~~~~~~~--~~~l~~~GG~~--~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~G 89 (329)
.++|+||.++++++- .+.|++|||.. +....+.+++|.||..+++|+++..+. .|.+|+.|+++++. |.+|+||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn-~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPN-APPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCC-CcCCCccceeEEeccCeEEEec
Confidence 457899999999885 56999999964 334446699999999999999998877 78899999999886 8999999
Q ss_pred cccC-----CCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCc----CcceeEEEEcCCCe
Q 020245 90 GRDG-----THKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSG----RLNDLWGFDVVDRK 160 (329)
Q Consensus 90 G~~~-----~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~----~~~~~~~~~~~~~~ 160 (329)
|--. ......++|.||+.+++|+++...+ .|.+|++|-++.+..+|++|||..+.+ +++++|+||+.+-+
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk 218 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK 218 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence 9754 2335679999999999999998876 589999999999999999999976544 78999999999999
Q ss_pred EEEecCCCCCCCCCCCcEEEEE-CCEEEEEeeeCCC----------CcccEEEEeCCC-----CceEEeeccCCCCCCcc
Q 020245 161 WIQYPSAGENCKGRGGPGLIVT-QGKIWVVYGFAGV----------EVDDVHCFDPAH-----AQWAQVETSGEKPTARS 224 (329)
Q Consensus 161 W~~~~~~~~~~~~~~~~~~~~~-~~~l~v~gG~~~~----------~~~~~~~~d~~~-----~~w~~~~~~~~~p~~r~ 224 (329)
|+++.+....|.+|.++++.+. ++.|||.||+... ..++++.++++. ..|..+.+.+..|.||.
T Consensus 219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs 298 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS 298 (521)
T ss_pred eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence 9999997777899999999887 9999999997522 568999999987 78999999989999999
Q ss_pred eeEEEEEC-CEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeec
Q 020245 225 VFSTVGIG-KHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWD 273 (329)
Q Consensus 225 ~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 273 (329)
++++++.. ++-+.|||..+-........+.+.++++.||++.++|....
T Consensus 299 gfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 299 GFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred ceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 99988774 59999999988555556667788999999999999998764
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.1e-35 Score=261.51 Aligned_cols=212 Identities=16% Similarity=0.286 Sum_probs=184.2
Q ss_pred EEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEE
Q 020245 26 ITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFD 105 (329)
Q Consensus 26 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d 105 (329)
.+.+++.||++||.... ...+.+++||+.+++|..+++ +|.+|..+++++++++||++||... .+.+++||
T Consensus 267 ~~~~~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPN----PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCC----CCceEEEE
Confidence 34589999999997542 234789999999999999987 6689999999999999999999762 25699999
Q ss_pred CCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCE
Q 020245 106 TRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK 185 (329)
Q Consensus 106 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 185 (329)
+.+++|..++++ |.+|..++++.++++||++||.... .+++++||+.+++|+.++++ +.+|..++++.++++
T Consensus 338 p~~n~W~~~~~l---~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 338 HGDAAWVNMPSL---LKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCCeEEECCCC---CCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999999988 7899999999999999999997543 36789999999999999988 688999999999999
Q ss_pred EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcC
Q 020245 186 IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTE 265 (329)
Q Consensus 186 l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~ 265 (329)
||++|| ...+||+++++|+.++ ++|.+|..+++++++++||++||.+.. ...+.+++||++
T Consensus 410 IYv~GG-------~~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~---------~~~~~ve~Yd~~ 470 (480)
T PHA02790 410 LFLVGR-------NAEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRG---------SYIDTIEVYNNR 470 (480)
T ss_pred EEEECC-------ceEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCC---------cccceEEEEECC
Confidence 999997 3678999999999987 667899999999999999999997532 224679999999
Q ss_pred CceeEeec
Q 020245 266 TLVWTRWD 273 (329)
Q Consensus 266 ~~~W~~~~ 273 (329)
+++|+..+
T Consensus 471 ~~~W~~~~ 478 (480)
T PHA02790 471 TYSWNIWD 478 (480)
T ss_pred CCeEEecC
Confidence 99998765
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=263.17 Aligned_cols=209 Identities=21% Similarity=0.297 Sum_probs=184.8
Q ss_pred EEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcC
Q 020245 78 MAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVV 157 (329)
Q Consensus 78 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 157 (329)
.+..++.||++||.. .....+.+++||+.+++|..++++ |.+|..++++.++++||++||.... .++++||+.
T Consensus 267 ~~~~~~~lyviGG~~-~~~~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWM-NNEIHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCC-CCCcCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCCC---CceEEEECC
Confidence 455899999999987 455678899999999999999998 7889999999999999999997532 678999999
Q ss_pred CCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEE
Q 020245 158 DRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVV 237 (329)
Q Consensus 158 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i 237 (329)
+++|+.++++ |.+|..++++.++++||++||..+. ...+.+||+.+++|+.++ ++|.+|..+++++++++||+
T Consensus 340 ~n~W~~~~~l---~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv 412 (480)
T PHA02790 340 DAAWVNMPSL---LKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFL 412 (480)
T ss_pred CCeEEECCCC---CCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEE
Confidence 9999999988 6889999999999999999997543 367889999999999987 66789999999999999999
Q ss_pred EcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccce
Q 020245 238 YGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDI 317 (329)
Q Consensus 238 ~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v 317 (329)
+||. +.+||+++++|+.++. +|.+|.. +++++++++ ||++||.+.. ...+.+
T Consensus 413 ~GG~-----------------~e~ydp~~~~W~~~~~------m~~~r~~--~~~~v~~~~--IYviGG~~~~-~~~~~v 464 (480)
T PHA02790 413 VGRN-----------------AEFYCESSNTWTLIDD------PIYPRDN--PELIIVDNK--LLLIGGFYRG-SYIDTI 464 (480)
T ss_pred ECCc-----------------eEEecCCCCcEeEcCC------CCCCccc--cEEEEECCE--EEEECCcCCC-cccceE
Confidence 9982 5689999999999998 8899999 899999966 9999998743 446889
Q ss_pred EEEecccCCcc
Q 020245 318 YFFTPCLDGIE 328 (329)
Q Consensus 318 ~~~~~~~~~~~ 328 (329)
++||+.+++|+
T Consensus 465 e~Yd~~~~~W~ 475 (480)
T PHA02790 465 EVYNNRTYSWN 475 (480)
T ss_pred EEEECCCCeEE
Confidence 99999999996
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=7.7e-35 Score=250.11 Aligned_cols=226 Identities=19% Similarity=0.300 Sum_probs=181.2
Q ss_pred eeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEE-EEeeCCCCCCCCcceeEEEECCEE
Q 020245 7 TWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWS-VADVTGDVPPPRVGVTMAAVGHTI 85 (329)
Q Consensus 7 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~i 85 (329)
+|..++. +|.+|..+++++++++||++||..... ..+++++||+.+++|. .......+|.+|..|++++++++|
T Consensus 52 ~W~~~~~---lp~~r~~~~~~~~~~~lyviGG~~~~~--~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~i 126 (323)
T TIGR03548 52 KWVKDGQ---LPYEAAYGASVSVENGIYYIGGSNSSE--RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTL 126 (323)
T ss_pred eEEEccc---CCccccceEEEEECCEEEEEcCCCCCC--CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEE
Confidence 6888875 788999999999999999999976432 3589999999999983 222233378899999999999999
Q ss_pred EEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEec
Q 020245 86 YMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYP 165 (329)
Q Consensus 86 yv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~ 165 (329)
|++||.. .....+++++||+.+++|+++++++ ..+|..++++.++++|||+||.+... ..++++||+++++|+.++
T Consensus 127 Yv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p--~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 127 YVGGGNR-NGKPSNKSYLFNLETQEWFELPDFP--GEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred EEEeCcC-CCccCceEEEEcCCCCCeeECCCCC--CCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECC
Confidence 9999986 4556789999999999999998773 24689999999999999999976433 356899999999999998
Q ss_pred CCCC--CCCCCCCcE-EEEECCEEEEEeeeCCC---------------------------------CcccEEEEeCCCCc
Q 020245 166 SAGE--NCKGRGGPG-LIVTQGKIWVVYGFAGV---------------------------------EVDDVHCFDPAHAQ 209 (329)
Q Consensus 166 ~~~~--~~~~~~~~~-~~~~~~~l~v~gG~~~~---------------------------------~~~~~~~~d~~~~~ 209 (329)
++.. .|..+..++ ++..+++||++||.++. ..+.+++||+.+++
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 282 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK 282 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe
Confidence 7642 233333344 34557999999998642 02579999999999
Q ss_pred eEEeeccCCCC-CCcceeEEEEECCEEEEEcCccCC
Q 020245 210 WAQVETSGEKP-TARSVFSTVGIGKHIVVYGGEVDP 244 (329)
Q Consensus 210 w~~~~~~~~~p-~~r~~~~~~~~~~~i~i~GG~~~~ 244 (329)
|+.+. .+| .+|..++++.++++||++||...+
T Consensus 283 W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 283 WKSIG---NSPFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred eeEcc---cccccccCchheEEECCEEEEEeccccC
Confidence 99998 444 589999999999999999997544
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=5.8e-35 Score=260.57 Aligned_cols=249 Identities=27% Similarity=0.514 Sum_probs=221.6
Q ss_pred CCCCCCCCcceeEEEECCEEEEEccccCCCCCCC-ceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCC
Q 020245 66 TGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELN-ELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGV 144 (329)
Q Consensus 66 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 144 (329)
....|.+|..|+++.+++++|||||........+ +++.+|..+..|......+..|.+|++|.++.++++||+|||...
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~ 133 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK 133 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC
Confidence 3447889999999999999999999984333333 599999999999999999988999999999999999999999885
Q ss_pred -CcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC--CcccEEEEeCCCCceEEeeccCCCCC
Q 020245 145 -SGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV--EVDDVHCFDPAHAQWAQVETSGEKPT 221 (329)
Q Consensus 145 -~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~--~~~~~~~~d~~~~~w~~~~~~~~~p~ 221 (329)
...+++++.||+.+.+|..+.+....|.+|..|+++.+++++||+||.... ..+++|+||+++.+|.++...+..|.
T Consensus 134 ~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 134 KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 456789999999999999999998888999999999999999999998765 58999999999999999999999999
Q ss_pred CcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceE
Q 020245 222 ARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGL 301 (329)
Q Consensus 222 ~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i 301 (329)
||.+|++++++++++|+||... ...+++++|+||+.+..|.++.. .+..|.+|+. |+++... +++
T Consensus 214 pR~gH~~~~~~~~~~v~gG~~~--------~~~~l~D~~~ldl~~~~W~~~~~---~g~~p~~R~~--h~~~~~~--~~~ 278 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLVFGGGDD--------GDVYLNDVHILDLSTWEWKLLPT---GGDLPSPRSG--HSLTVSG--DHL 278 (482)
T ss_pred CCCCceEEEECCeEEEEecccc--------CCceecceEeeecccceeeeccc---cCCCCCCcce--eeeEEEC--CEE
Confidence 9999999999999999999762 23678999999999999998876 8889999999 8888777 559
Q ss_pred EEEcCCCCCCC-cccceEEEecccCCccC
Q 020245 302 LVYGGNSPSND-RLDDIYFFTPCLDGIED 329 (329)
Q Consensus 302 ~i~GG~~~~~~-~~~~v~~~~~~~~~~~~ 329 (329)
+|+||...... .+.++|.|++.+..|++
T Consensus 279 ~l~gG~~~~~~~~l~~~~~l~~~~~~w~~ 307 (482)
T KOG0379|consen 279 LLFGGGTDPKQEPLGDLYGLDLETLVWSK 307 (482)
T ss_pred EEEcCCcccccccccccccccccccceee
Confidence 99999875433 79999999999988863
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=243.07 Aligned_cols=253 Identities=30% Similarity=0.524 Sum_probs=217.4
Q ss_pred CCCCCcceeEEEEC--CEEEEEccccC---CCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeC-CeEEEEccc
Q 020245 69 VPPPRVGVTMAAVG--HTIYMFGGRDG---THKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADD-RHVYIFGGC 142 (329)
Q Consensus 69 ~p~~r~~~~~~~~~--~~iyv~GG~~~---~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~i~v~GG~ 142 (329)
.|.+|.++++++.. +.|++|||--. .....+++|+||+.++.|+++.... .|.+|+.|.++++. +.+|++||.
T Consensus 63 ~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn-~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 63 PPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPN-APPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred CCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCC-CcCCCccceeEEeccCeEEEeccc
Confidence 78899999998864 57999999643 2346789999999999999998764 37889999999885 899999996
Q ss_pred CCCc------CcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC-----CcccEEEEeCCCCceE
Q 020245 143 GVSG------RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV-----EVDDVHCFDPAHAQWA 211 (329)
Q Consensus 143 ~~~~------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~-----~~~~~~~~d~~~~~w~ 211 (329)
-..- -..++|.||+.+++|+++.... .|.+|.+|.|++...+|++|||+-+. +.+++|+||+++.+|+
T Consensus 142 faSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 142 FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred cCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 4422 3579999999999999999765 46999999999999999999998655 6799999999999999
Q ss_pred EeeccCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCC-----ceeEeecCCCCCCCCCCCC
Q 020245 212 QVETSGEKPTARSVFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTET-----LVWTRWDDGPGSDHHPGPR 285 (329)
Q Consensus 212 ~~~~~~~~p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~W~~~~~~~~~~~~p~~r 285 (329)
++.+.+..|.+|++|++++. .+.|||+||++..........+...+++|.++++. -.|+.+.. .+..|.||
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp---~g~kPspR 297 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP---SGVKPSPR 297 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC---CCCCCCCC
Confidence 99998888999999999888 89999999998776444445578889999999988 67999998 88899999
Q ss_pred CcceecccccCCcceEEEEcCCCC--------CCCcccceEEEecccCCccC
Q 020245 286 GWCAFAGGLRGGKHGLLVYGGNSP--------SNDRLDDIYFFTPCLDGIED 329 (329)
Q Consensus 286 ~~~~~~~~~~~~~~~i~i~GG~~~--------~~~~~~~v~~~~~~~~~~~~ 329 (329)
+. +++++... .+-+.|||..+ .+.+++|+|.||+..++|.+
T Consensus 298 sg--fsv~va~n-~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 298 SG--FSVAVAKN-HKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred Cc--eeEEEecC-CceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence 99 89888887 56999999965 24789999999999999974
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.8e-34 Score=248.45 Aligned_cols=242 Identities=20% Similarity=0.307 Sum_probs=187.3
Q ss_pred CcceeEEeccCCCCC-CCCcceeEEEECCEEEEEcCccCCC----CccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeE
Q 020245 4 AKGTWIKLDQKGSGP-GARSSHAITIVGQKVYAFGGEFTPR----VPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTM 78 (329)
Q Consensus 4 ~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~l~~~GG~~~~~----~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~ 78 (329)
.+++|.+++. +| .+|..+++++++++||++||..... ....+++++||+.+++|+.++.+ +|.+|.++++
T Consensus 39 ~~~~W~~l~~---~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~--~p~~~~~~~~ 113 (346)
T TIGR03547 39 PSKGWQKIAD---FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR--SPVGLLGASG 113 (346)
T ss_pred CCCCceECCC---CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC--CCCcccceeE
Confidence 4678999976 66 5899999999999999999985322 12357899999999999998742 5677877877
Q ss_pred E-EECCEEEEEccccCCC---------------------------------CCCCceEEEECCCCcEEEcccCCCCCC-C
Q 020245 79 A-AVGHTIYMFGGRDGTH---------------------------------KELNELYSFDTRTNQWTLLSNGDAGPP-H 123 (329)
Q Consensus 79 ~-~~~~~iyv~GG~~~~~---------------------------------~~~~~~~~~d~~~~~W~~~~~~~~~p~-~ 123 (329)
+ +++++||++||..... ...+.+++||+.+++|+.++++ |. +
T Consensus 114 ~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~ 190 (346)
T TIGR03547 114 FSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN---PFLG 190 (346)
T ss_pred EEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC---CCCc
Confidence 6 7899999999986210 1247899999999999999888 54 6
Q ss_pred cccceeEeeCCeEEEEcccCCCc-CcceeEEEE--cCCCeEEEecCCCCCC----CCCCCcEEEEECCEEEEEeeeCCC-
Q 020245 124 RSYHSTAADDRHVYIFGGCGVSG-RLNDLWGFD--VVDRKWIQYPSAGENC----KGRGGPGLIVTQGKIWVVYGFAGV- 195 (329)
Q Consensus 124 r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~~~--~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~l~v~gG~~~~- 195 (329)
|..++++.++++|||+||..... ....++.|+ +.+++|+.+++++... ..+..++++.++++|||+||....
T Consensus 191 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~ 270 (346)
T TIGR03547 191 TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPG 270 (346)
T ss_pred CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCC
Confidence 88999999999999999976443 234555555 5777999999885321 122455577899999999997521
Q ss_pred -----------------CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeece
Q 020245 196 -----------------EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGE 258 (329)
Q Consensus 196 -----------------~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~ 258 (329)
.+..+++||+++++|+.+. .+|.+|..+++++++++|||+||.+.. +..+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~ 339 (346)
T TIGR03547 271 AQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTD 339 (346)
T ss_pred chhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCCEEEEEeccCCC--------CCEeee
Confidence 1236789999999999998 677899998888999999999997543 245678
Q ss_pred eEEEEc
Q 020245 259 LYSLDT 264 (329)
Q Consensus 259 ~~~~d~ 264 (329)
|+.|..
T Consensus 340 v~~~~~ 345 (346)
T TIGR03547 340 VYLLSW 345 (346)
T ss_pred EEEEEe
Confidence 877653
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=9.9e-34 Score=247.46 Aligned_cols=248 Identities=21% Similarity=0.303 Sum_probs=191.2
Q ss_pred cceeEEeccCCCCC-CCCcceeEEEECCEEEEEcCccCC-C---CccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEE
Q 020245 5 KGTWIKLDQKGSGP-GARSSHAITIVGQKVYAFGGEFTP-R---VPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMA 79 (329)
Q Consensus 5 ~~~W~~~~~~~~~p-~~r~~~~~~~~~~~l~~~GG~~~~-~---~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 79 (329)
+++|.++++ +| .+|..+++++++++||++||.... . ....+++++||+.+++|+.++.. .|.++.+|+++
T Consensus 61 ~~~W~~l~~---~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~--~p~~~~~~~~~ 135 (376)
T PRK14131 61 SKGWTKIAA---FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR--SPVGLAGHVAV 135 (376)
T ss_pred CCCeEECCc---CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC--CCCcccceEEE
Confidence 578999875 44 489999999999999999997641 1 12458899999999999998752 46777788877
Q ss_pred E-ECCEEEEEccccCC---------------------------------CCCCCceEEEECCCCcEEEcccCCCCCC-Cc
Q 020245 80 A-VGHTIYMFGGRDGT---------------------------------HKELNELYSFDTRTNQWTLLSNGDAGPP-HR 124 (329)
Q Consensus 80 ~-~~~~iyv~GG~~~~---------------------------------~~~~~~~~~~d~~~~~W~~~~~~~~~p~-~r 124 (329)
+ .+++||++||.... ....+++++||+.+++|+.++++ |. +|
T Consensus 136 ~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~ 212 (376)
T PRK14131 136 SLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES---PFLGT 212 (376)
T ss_pred EeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC---CCCCC
Confidence 7 89999999997521 01257899999999999999877 54 68
Q ss_pred ccceeEeeCCeEEEEcccCCCc-CcceeE--EEEcCCCeEEEecCCCCCCC-----CCCCcEEEEECCEEEEEeeeCCC-
Q 020245 125 SYHSTAADDRHVYIFGGCGVSG-RLNDLW--GFDVVDRKWIQYPSAGENCK-----GRGGPGLIVTQGKIWVVYGFAGV- 195 (329)
Q Consensus 125 ~~~~~~~~~~~i~v~GG~~~~~-~~~~~~--~~~~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~v~gG~~~~- 195 (329)
.+++++.++++|||+||..... ....++ .||+++++|+.+++++.... .+..+.+++++++|||+||.+..
T Consensus 213 ~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~ 292 (376)
T PRK14131 213 AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPG 292 (376)
T ss_pred CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCC
Confidence 8899999999999999975433 233444 55778999999998853211 11223356789999999997521
Q ss_pred -----------------CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeece
Q 020245 196 -----------------EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGE 258 (329)
Q Consensus 196 -----------------~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~ 258 (329)
....+++||+++++|+.+. .+|.+|..++++++++.|||+||.... +...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~~iyv~GG~~~~--------~~~~~~ 361 (376)
T PRK14131 293 ARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNNGVLLIGGETAG--------GKAVSD 361 (376)
T ss_pred ChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCCEEEEEcCCCCC--------CcEeee
Confidence 0124678999999999887 778999999999999999999997532 245789
Q ss_pred eEEEEcCCceeEe
Q 020245 259 LYSLDTETLVWTR 271 (329)
Q Consensus 259 ~~~~d~~~~~W~~ 271 (329)
|++|+++.+.++.
T Consensus 362 v~~~~~~~~~~~~ 374 (376)
T PRK14131 362 VTLLSWDGKKLTV 374 (376)
T ss_pred EEEEEEcCCEEEE
Confidence 9999999888764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=8.6e-30 Score=214.70 Aligned_cols=253 Identities=25% Similarity=0.404 Sum_probs=213.8
Q ss_pred CCcEEEEeeC-CCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCe
Q 020245 57 TLTWSVADVT-GDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRH 135 (329)
Q Consensus 57 ~~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 135 (329)
.-+|+++... +..|.+|.+|.++++.+.|.||||-+ ....+++..|+..+++|..-..-++.|.+...|..+..+.+
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN--EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr 93 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN--EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR 93 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCc--ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCce
Confidence 4579887764 45788999999999999999999977 56778999999999999988888888999999999989999
Q ss_pred EEEEcccCC-CcCcceeEEEEcCCCeEEEecCCC----CCCCCCCCcEEEEECCEEEEEeeeCCC----------CcccE
Q 020245 136 VYIFGGCGV-SGRLNDLWGFDVVDRKWIQYPSAG----ENCKGRGGPGLIVTQGKIWVVYGFAGV----------EVDDV 200 (329)
Q Consensus 136 i~v~GG~~~-~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~~~~~~~~~l~v~gG~~~~----------~~~~~ 200 (329)
||+|||..+ ..+.+++|++....-.|.++.+.. .+|.+|.+|+..+++++.|+|||..++ +++++
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 999999765 347889999888888999988754 447899999999999999999997533 57899
Q ss_pred EEEeCCCC----ceEEeeccCCCCCCcceeEEEEE------CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeE
Q 020245 201 HCFDPAHA----QWAQVETSGEKPTARSVFSTVGI------GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWT 270 (329)
Q Consensus 201 ~~~d~~~~----~w~~~~~~~~~p~~r~~~~~~~~------~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~ 270 (329)
|.+++... .|......+.+|.+|..|.++.+ ..+|||+||.+. ..+.|+|.+|+++.+|.
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~Ldl~Tl~W~ 243 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWTLDLDTLTWN 243 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeEEecceeecc
Confidence 99988644 59988888899999999998877 238999999753 56899999999999999
Q ss_pred eecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCC---C----------CcccceEEEecccCCcc
Q 020245 271 RWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPS---N----------DRLDDIYFFTPCLDGIE 328 (329)
Q Consensus 271 ~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~---~----------~~~~~v~~~~~~~~~~~ 328 (329)
+..- .+..|.||+. |++.++++| +|||||+... + ...+.+-++++.+..|+
T Consensus 244 kp~~---~G~~PlPRSL--Hsa~~IGnK--MyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 244 KPSL---SGVAPLPRSL--HSATTIGNK--MYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred cccc---cCCCCCCccc--ccceeecce--eEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 9987 7889999999 999999977 9999999531 0 22445667888888885
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.93 E-value=1.1e-23 Score=171.18 Aligned_cols=290 Identities=19% Similarity=0.289 Sum_probs=220.8
Q ss_pred CCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCC--CCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccc
Q 020245 14 KGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLE--TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGR 91 (329)
Q Consensus 14 ~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 91 (329)
-|++|.+-...+.+.+++.+||--|... ...+.+|++ ...|+.+... +-.+|....+++++++||+|||.
T Consensus 30 lPdlPvg~KnG~Ga~ig~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~F--pG~~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 30 LPDLPVGFKNGAGALIGDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIADF--PGGARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred CCCCCccccccccceecceEEEEeccCC------ccceehhhhcCCCCceEcccC--CCcccccchheeeCCeEEEeecc
Confidence 3557888888888899999999777433 567888877 4689999885 33689999999999999999999
Q ss_pred cCC----CCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCc--------------------
Q 020245 92 DGT----HKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSG-------------------- 146 (329)
Q Consensus 92 ~~~----~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~-------------------- 146 (329)
... .+..+++|+||+.+++|+++.... |....+++++.+++ +|+++||.+..-
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s--P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~ 179 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS--PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDK 179 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheecccc--ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHH
Confidence 852 335789999999999999999886 67788888888888 999999975410
Q ss_pred --------------CcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC--CcccEEEEeC--CCC
Q 020245 147 --------------RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV--EVDDVHCFDP--AHA 208 (329)
Q Consensus 147 --------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~--~~~~~~~~d~--~~~ 208 (329)
....+..|++.++.|+.+...+ -.++..++.+.-++++.++.|.-.. +...+.+++. ...
T Consensus 180 i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p--f~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~ 257 (381)
T COG3055 180 IIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP--FYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNL 257 (381)
T ss_pred HHHHHhCCCHHHhcccccccccccccchhhhcCcCc--ccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCce
Confidence 3457889999999999999876 3466777777778889988886433 5566677766 456
Q ss_pred ceEEeeccCCCC----CCcceeEEEEECCEEEEEcCccCCCC---------CCcC-CCCeeeceeEEEEcCCceeEeecC
Q 020245 209 QWAQVETSGEKP----TARSVFSTVGIGKHIVVYGGEVDPSD---------LGHL-GAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 209 ~w~~~~~~~~~p----~~r~~~~~~~~~~~i~i~GG~~~~~~---------~~~~-~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
+|..+....... ....++-.-..++.+++.||...... .-|. ....+.++|+.|| .+.|+.+..
T Consensus 258 ~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 258 KWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGE 335 (381)
T ss_pred eeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecc
Confidence 899987432111 12222223345788999998764422 1122 3346677899999 889999998
Q ss_pred CCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCc
Q 020245 275 GPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGI 327 (329)
Q Consensus 275 ~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~ 327 (329)
+|.++.+ ..++..+++ +|++||....+.++..|+.+.....+.
T Consensus 336 ------Lp~~l~Y--G~s~~~nn~--vl~IGGE~~~Gka~~~v~~l~~~gk~l 378 (381)
T COG3055 336 ------LPQGLAY--GVSLSYNNK--VLLIGGETSGGKATTRVYSLSWDGKKL 378 (381)
T ss_pred ------cCCCccc--eEEEecCCc--EEEEccccCCCeeeeeEEEEEEcCceE
Confidence 8888887 777777755 999999998889999999988777654
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.87 E-value=7.3e-20 Score=149.08 Aligned_cols=245 Identities=24% Similarity=0.372 Sum_probs=184.5
Q ss_pred cceeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCC---CccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE
Q 020245 5 KGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPR---VPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV 81 (329)
Q Consensus 5 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~---~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 81 (329)
...|++++.. +-.+|.+..+++++++||+|||..... ....+++|+|||..++|+++... .|....+++++..
T Consensus 69 ~k~W~~~a~F--pG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~ 144 (381)
T COG3055 69 GKGWTKIADF--PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSL 144 (381)
T ss_pred CCCceEcccC--CCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--cccccccceeEec
Confidence 4689999986 446799999999999999999975332 34568999999999999999986 5677888999998
Q ss_pred CC-EEEEEccccC---------------------------------CCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 82 GH-TIYMFGGRDG---------------------------------THKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 82 ~~-~iyv~GG~~~---------------------------------~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
++ +||++||.+. +......+..||+.+++|+.+...+ -.++.+.
T Consensus 145 ~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p--f~~~aGs 222 (381)
T COG3055 145 NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP--FYGNAGS 222 (381)
T ss_pred CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc--ccCccCc
Confidence 88 9999999864 1234568999999999999988664 3567776
Q ss_pred eeEeeCCeEEEEcccCCCc-CcceeEEEEcC--CCeEEEecCCCCCC----CCCCCcEEEEECCEEEEEeeeC-------
Q 020245 128 STAADDRHVYIFGGCGVSG-RLNDLWGFDVV--DRKWIQYPSAGENC----KGRGGPGLIVTQGKIWVVYGFA------- 193 (329)
Q Consensus 128 ~~~~~~~~i~v~GG~~~~~-~~~~~~~~~~~--~~~W~~~~~~~~~~----~~~~~~~~~~~~~~l~v~gG~~------- 193 (329)
+.+.-++++.+|-|.-.+. .+..+.+++.. ..+|.++..++.+. .....+-.-..++.+.|.||..
T Consensus 223 a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~ 302 (381)
T COG3055 223 AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKA 302 (381)
T ss_pred ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHH
Confidence 6666677899999976655 45566666665 45899998876321 1222222335678888888832
Q ss_pred ----------CC---CcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeE
Q 020245 194 ----------GV---EVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELY 260 (329)
Q Consensus 194 ----------~~---~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 260 (329)
+. -..++|.+| .+.|+.+. ++|.++.+..++..++.||++||.+.. +..+..|+
T Consensus 303 y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~G---eLp~~l~YG~s~~~nn~vl~IGGE~~~--------Gka~~~v~ 369 (381)
T COG3055 303 YKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVG---ELPQGLAYGVSLSYNNKVLLIGGETSG--------GKATTRVY 369 (381)
T ss_pred HHhcccccccchhhhhhceEEEEc--CCceeeec---ccCCCccceEEEecCCcEEEEccccCC--------CeeeeeEE
Confidence 11 236788887 89999988 888999888888999999999997654 46677777
Q ss_pred EEEcCCce
Q 020245 261 SLDTETLV 268 (329)
Q Consensus 261 ~~d~~~~~ 268 (329)
.+....+.
T Consensus 370 ~l~~~gk~ 377 (381)
T COG3055 370 SLSWDGKK 377 (381)
T ss_pred EEEEcCce
Confidence 77665543
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.76 E-value=1.1e-19 Score=153.67 Aligned_cols=311 Identities=20% Similarity=0.316 Sum_probs=210.1
Q ss_pred cceeEEeccCC-------CCCCCCcceeEEEECC--EEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcc
Q 020245 5 KGTWIKLDQKG-------SGPGARSSHAITIVGQ--KVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVG 75 (329)
Q Consensus 5 ~~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~ 75 (329)
...|.++.... .-|..|.+|+++.... .||++||.++-.. ..++|.|+...+.|..+..-+..|..|++
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~--l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD--LADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh--HHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 45788776544 4688999999999754 9999999876433 48999999999999999887778999999
Q ss_pred eeEEEECC--EEEEEccccC-----CCCCCCceEEEECCCCcEEEcccCC---CCCCCcccceeEeeCCe--EEEEcccC
Q 020245 76 VTMAAVGH--TIYMFGGRDG-----THKELNELYSFDTRTNQWTLLSNGD---AGPPHRSYHSTAADDRH--VYIFGGCG 143 (329)
Q Consensus 76 ~~~~~~~~--~iyv~GG~~~-----~~~~~~~~~~~d~~~~~W~~~~~~~---~~p~~r~~~~~~~~~~~--i~v~GG~~ 143 (329)
|.|+.... ++|++|-+-. .....+++|+||..++.|..++... ..|...+.|.+++.+++ +||+||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99998765 8999998754 2345678999999999999887552 45888999999999887 99999964
Q ss_pred CCc---CcceeEEEEcCCCeEEEecCCCCC-------CCCCCCcEEEEE--CCEEEEEeeeCCC-CcccEEEEeCCCCce
Q 020245 144 VSG---RLNDLWGFDVVDRKWIQYPSAGEN-------CKGRGGPGLIVT--QGKIWVVYGFAGV-EVDDVHCFDPAHAQW 210 (329)
Q Consensus 144 ~~~---~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~--~~~l~v~gG~~~~-~~~~~~~~d~~~~~w 210 (329)
-.. ...-+|.||.....|..+...-.. ...|.+|++-.+ +..+|++||...+ .++-+..||+..++-
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~ 475 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHV 475 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccc
Confidence 322 456789999999999887754211 124555665443 4679999886655 566666776655443
Q ss_pred EEeecc-----CCCCCCcceeEEEEE---CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCC------
Q 020245 211 AQVETS-----GEKPTARSVFSTVGI---GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGP------ 276 (329)
Q Consensus 211 ~~~~~~-----~~~p~~r~~~~~~~~---~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~------ 276 (329)
..+..- ...|.+..... ++. .+.|...-|......- ......+.+|+|++.++.|..+..-.
T Consensus 476 ~~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~---~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~ 551 (723)
T KOG2437|consen 476 DIISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEK---REENVRNSFWIYDIVRNSWSCIYKIDQAAKDN 551 (723)
T ss_pred hhhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccC---ccccccCcEEEEEecccchhhHhhhHHhhccC
Confidence 333210 01111111111 122 3467777776544321 11234578999999999997754300
Q ss_pred ------------CCCCCCCCCCcceecccccCCcceEEEEcCCCCC----CCcccceEEEecc
Q 020245 277 ------------GSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPS----NDRLDDIYFFTPC 323 (329)
Q Consensus 277 ------------~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~----~~~~~~v~~~~~~ 323 (329)
.+...|-+|.. ++.++.-...-+|++||+... -..++|.|.+++-
T Consensus 552 dtvfsvpFp~ks~~~~~~~~rf~--h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 552 DTVFSVPFPTKSLQEEEPCPRFA--HQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred CceeeccCCcccccceeccccch--hHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 12224556666 444333222558999998643 2345666666554
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.67 E-value=1e-16 Score=135.87 Aligned_cols=261 Identities=19% Similarity=0.297 Sum_probs=185.3
Q ss_pred CCcEEEEeeCC-------CCCCCCcceeEEEECC--EEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 57 TLTWSVADVTG-------DVPPPRVGVTMAAVGH--TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 57 ~~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
+-+|.+++... .-|..|.+|.|+.... =||++||.+ .-+.+.++|.|+...+.|..+.--+..|..|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 45687766543 3578999999998765 699999999 7888999999999999999998887779999999
Q ss_pred eeEeeCC--eEEEEcccCCCc------CcceeEEEEcCCCeEEEecCCCC---CCCCCCCcEEEEECCE--EEEEeeeCC
Q 020245 128 STAADDR--HVYIFGGCGVSG------RLNDLWGFDVVDRKWIQYPSAGE---NCKGRGGPGLIVTQGK--IWVVYGFAG 194 (329)
Q Consensus 128 ~~~~~~~--~i~v~GG~~~~~------~~~~~~~~~~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~~--l~v~gG~~~ 194 (329)
-++.... ++|+.|-+-... ...++|+||..++.|.-+..... .|...+.|.|++..++ +||+||..-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 9998644 999999865443 34689999999999998876532 3677889999998877 999999752
Q ss_pred C----CcccEEEEeCCCCceEEeeccC-------CCCCCcceeEEEEE--CCEEEEEcCccCCCCCCcCCCCeeeceeEE
Q 020245 195 V----EVDDVHCFDPAHAQWAQVETSG-------EKPTARSVFSTVGI--GKHIVVYGGEVDPSDLGHLGAGKFAGELYS 261 (329)
Q Consensus 195 ~----~~~~~~~~d~~~~~w~~~~~~~-------~~p~~r~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 261 (329)
+ ...-+|.||.....|..+...- +.-..|.+|+|-.+ ++.+|++||.... ...+-...
T Consensus 397 ~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~---------~El~L~f~ 467 (723)
T KOG2437|consen 397 TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK---------TELNLFFS 467 (723)
T ss_pred cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc---------eEEeehhc
Confidence 2 5688999999999998765311 12245777776655 5589999986443 22445566
Q ss_pred EEcCCceeEeecC-CCCCCCCCCCCCcceecccccCCcceEEEEcCCCCC-----CCcccceEEEecccCCcc
Q 020245 262 LDTETLVWTRWDD-GPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPS-----NDRLDDIYFFTPCLDGIE 328 (329)
Q Consensus 262 ~d~~~~~W~~~~~-~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~-----~~~~~~v~~~~~~~~~~~ 328 (329)
||+....=..+.. .+....+-..+.++.-++..... ..|...-|.... .+..+.+|+|++.++.|.
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~-~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~ 539 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPEL-NEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWS 539 (723)
T ss_pred ceeccccchhhhccCcCccccCCCcchhhhcccCCCC-cchhhhcccchhccCccccccCcEEEEEecccchh
Confidence 7665443222221 01111122333433222222222 557777777653 346789999999999885
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.33 E-value=6e-12 Score=76.12 Aligned_cols=50 Identities=40% Similarity=0.711 Sum_probs=45.4
Q ss_pred CCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCc
Q 020245 72 PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHR 124 (329)
Q Consensus 72 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r 124 (329)
+|.+|++++++++|||+||.......++++++||+.+++|++++++ |.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC---CCCC
Confidence 5889999999999999999994478899999999999999999988 6665
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.25 E-value=2.3e-11 Score=73.53 Aligned_cols=50 Identities=36% Similarity=0.638 Sum_probs=43.4
Q ss_pred CCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCC
Q 020245 20 ARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR 73 (329)
Q Consensus 20 ~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r 73 (329)
||.+|++++++++|||+||.... ....+++++||+.+++|++++. +|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 68999999999999999998765 4456999999999999999986 55665
No 33
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.11 E-value=1.1e-07 Score=76.12 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=135.9
Q ss_pred EEEEEccccCCCCCCCceEEEECCCCc--------EEEcccCCCCCCCcccceeEee----CCeEEEEcccCCC------
Q 020245 84 TIYMFGGRDGTHKELNELYSFDTRTNQ--------WTLLSNGDAGPPHRSYHSTAAD----DRHVYIFGGCGVS------ 145 (329)
Q Consensus 84 ~iyv~GG~~~~~~~~~~~~~~d~~~~~--------W~~~~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~------ 145 (329)
..+|.||...++..++.+|+....+.. .+.....++.|.+|++|++.++ +...++|||+.--
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 577889999777888889988655321 2333444778999999999876 3367888996431
Q ss_pred --------cCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC---CcccEEEEeCCCC---ceE
Q 020245 146 --------GRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV---EVDDVHCFDPAHA---QWA 211 (329)
Q Consensus 146 --------~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~---~~~~~~~~d~~~~---~w~ 211 (329)
.+.+.++.+|++-+..+... +++...+..+|.+..-++.+|++||+.-. ...++++...+-- -.-
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 14567889999888765443 33335778888888889999999997522 4556666654211 111
Q ss_pred EeeccCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcc
Q 020245 212 QVETSGEKPTARSVFSTVGI---GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWC 288 (329)
Q Consensus 212 ~~~~~~~~p~~r~~~~~~~~---~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~ 288 (329)
... .++......++++. .+..+|+||+..++. .........+|-+.-.-.....++=.++....|.+
T Consensus 199 sC~---vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ------KRm~C~~V~Ldd~~I~ie~~E~P~Wt~dI~hSrtW- 268 (337)
T PF03089_consen 199 SCT---VLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ------KRMECNTVSLDDDGIHIEEREPPEWTGDIKHSRTW- 268 (337)
T ss_pred EEE---ECCCCceEeeeeEeecCCCceEEEecccccce------eeeeeeEEEEeCCceEeccCCCCCCCCCcCcCccc-
Confidence 111 22233333333332 358889999865432 22223344455544444444444444456778888
Q ss_pred eecccccCCcceEEEEcCCCCC-CCcccceEEEeccc
Q 020245 289 AFAGGLRGGKHGLLVYGGNSPS-NDRLDDIYFFTPCL 324 (329)
Q Consensus 289 ~~~~~~~~~~~~i~i~GG~~~~-~~~~~~v~~~~~~~ 324 (329)
++...=.+ ..++.+=|.+.. .......|+...++
T Consensus 269 -FGgs~G~G-~~Li~iP~e~~~~~~da~~fY~v~f~~ 303 (337)
T PF03089_consen 269 -FGGSMGKG-SALIGIPSEGRQAPSDAYYFYQVSFQQ 303 (337)
T ss_pred -cccccCCc-eEEEEECCCCCCCCCCceEEEEEEecc
Confidence 77777766 344444443221 12233444444443
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.08 E-value=2.3e-10 Score=68.22 Aligned_cols=46 Identities=37% Similarity=0.694 Sum_probs=42.4
Q ss_pred CCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccC
Q 020245 72 PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNG 117 (329)
Q Consensus 72 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~ 117 (329)
+|.+|++++++++|||+||.......++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 5889999999999999999996588999999999999999999887
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.07 E-value=4.6e-10 Score=67.38 Aligned_cols=49 Identities=41% Similarity=0.692 Sum_probs=42.1
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV 81 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 81 (329)
++++||+||....+....+++++||+.+++|+++.. +|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~---~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGD---LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCC---CCCCccceEEEEC
Confidence 579999999985556667999999999999999833 8899999999874
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.05 E-value=4e-10 Score=67.19 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=41.4
Q ss_pred CcccceeEeeCCeEEEEcccCC-CcCcceeEEEEcCCCeEEEecCC
Q 020245 123 HRSYHSTAADDRHVYIFGGCGV-SGRLNDLWGFDVVDRKWIQYPSA 167 (329)
Q Consensus 123 ~r~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~~~~~~~~W~~~~~~ 167 (329)
+|..|+++.++++||++||... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 5899999999999999999988 66889999999999999999887
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.03 E-value=8.4e-10 Score=66.21 Aligned_cols=48 Identities=40% Similarity=0.768 Sum_probs=42.1
Q ss_pred CCEEEEEcccc-CCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEee
Q 020245 82 GHTIYMFGGRD-GTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD 132 (329)
Q Consensus 82 ~~~iyv~GG~~-~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 132 (329)
+++|||+||.. .....++++|+||+.+++|++++.. |.+|.+|+++.+
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~---P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDL---PPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCC---CCCccceEEEEC
Confidence 57899999998 4677889999999999999999555 899999999864
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.03 E-value=1.1e-09 Score=65.67 Aligned_cols=46 Identities=43% Similarity=0.730 Sum_probs=41.7
Q ss_pred CCcceeEEEECCEEEEEccc--cCCCCCCCceEEEECCCCcEEEcccC
Q 020245 72 PRVGVTMAAVGHTIYMFGGR--DGTHKELNELYSFDTRTNQWTLLSNG 117 (329)
Q Consensus 72 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~~~~W~~~~~~ 117 (329)
+|.+|++++++++|||+||. .......++++.||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58899999999999999999 33677889999999999999999876
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.98 E-value=7.3e-10 Score=66.64 Aligned_cols=46 Identities=43% Similarity=0.853 Sum_probs=31.7
Q ss_pred CCcceeEEEE-CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccC
Q 020245 72 PRVGVTMAAV-GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNG 117 (329)
Q Consensus 72 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~ 117 (329)
+|.+|+++.+ +++|||+||.......++++++||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 6899999998 589999999995557999999999999999999665
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.98 E-value=2.1e-09 Score=64.44 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=40.7
Q ss_pred CCcceeEEEECCEEEEEcCc-cCCCCccCCceEEEeCCCCcEEEEeeC
Q 020245 20 ARSSHAITIVGQKVYAFGGE-FTPRVPVDNNLHVFDLETLTWSVADVT 66 (329)
Q Consensus 20 ~r~~~~~~~~~~~l~~~GG~-~~~~~~~~~~~~~~d~~~~~W~~~~~~ 66 (329)
||..|++++++++||++||. ........++++.||+.+++|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 344455679999999999999998763
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.92 E-value=1.7e-09 Score=64.98 Aligned_cols=46 Identities=41% Similarity=0.751 Sum_probs=31.1
Q ss_pred CcccceeEee-CCeEEEEcccCCC-cCcceeEEEEcCCCeEEEecCCC
Q 020245 123 HRSYHSTAAD-DRHVYIFGGCGVS-GRLNDLWGFDVVDRKWIQYPSAG 168 (329)
Q Consensus 123 ~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~~~~~~~~~~~W~~~~~~~ 168 (329)
+|.+|+++.+ +++|||+||.... ..++++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5899999998 5899999999887 58999999999999999997663
No 42
>PLN02772 guanylate kinase
Probab=98.91 E-value=1.4e-08 Score=86.94 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEee-CCeEEEEcccCCCcCc
Q 020245 70 PPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRL 148 (329)
Q Consensus 70 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~ 148 (329)
+.++..++++++++++||+||.+......+.+++||..+++|......+..|.+|.+|+++.+ +++|+|+++-...+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 358888999999999999999885444789999999999999999999999999999999988 67999998754433
Q ss_pred ceeEEEEcCC
Q 020245 149 NDLWGFDVVD 158 (329)
Q Consensus 149 ~~~~~~~~~~ 158 (329)
.++|-....|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 5666666554
No 43
>PLN02772 guanylate kinase
Probab=98.89 E-value=2e-08 Score=86.05 Aligned_cols=88 Identities=17% Similarity=0.332 Sum_probs=74.0
Q ss_pred CCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCC
Q 020245 18 PGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHK 96 (329)
Q Consensus 18 p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~ 96 (329)
+.++..++++++++++||+||.+... ...+.+++||..+.+|......+..|.+|-+|+++.+ +++|+|+++...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~-~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~--- 97 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN-TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA--- 97 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc-cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC---
Confidence 45899999999999999999977633 2468999999999999999998989999999999988 568999987652
Q ss_pred CCCceEEEECCCC
Q 020245 97 ELNELYSFDTRTN 109 (329)
Q Consensus 97 ~~~~~~~~d~~~~ 109 (329)
..+++|.+...|.
T Consensus 98 ~~~~~w~l~~~t~ 110 (398)
T PLN02772 98 PDDSIWFLEVDTP 110 (398)
T ss_pred CccceEEEEcCCH
Confidence 3477888876654
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.87 E-value=7.5e-09 Score=59.62 Aligned_cols=41 Identities=34% Similarity=0.582 Sum_probs=35.5
Q ss_pred CCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCC
Q 020245 17 GPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLET 57 (329)
Q Consensus 17 ~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~ 57 (329)
+|.+|..|++++++++|||+||.........+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999999999999999854455679999999875
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.77 E-value=2.3e-08 Score=57.53 Aligned_cols=41 Identities=39% Similarity=0.785 Sum_probs=36.7
Q ss_pred CCCCCcceeEEEECCEEEEEccccC-CCCCCCceEEEECCCC
Q 020245 69 VPPPRVGVTMAAVGHTIYMFGGRDG-THKELNELYSFDTRTN 109 (329)
Q Consensus 69 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~ 109 (329)
+|.+|.+|++++++++|||+||... ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999994 6788999999998763
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.70 E-value=1.9e-05 Score=64.56 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=115.7
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcc-eeEEEECC-----EEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCC
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVG-VTMAAVGH-----TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGP 121 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p 121 (329)
..++++||.+.+|+.++.+......... .....++. ++..+.... .......+.+|+..++.|+.+.... +
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~~~Wr~~~~~~--~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGSNSWRTIECSP--P 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCCCCccccccCC--C
Confidence 4689999999999999864311011111 11122221 344443221 1123457899999999999987542 1
Q ss_pred CCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEE-ecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccE
Q 020245 122 PHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQ-YPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDV 200 (329)
Q Consensus 122 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~ 200 (329)
........+.++|.+|-+.-.........+..||+.+++|.. ++.............++.++++|.++........-++
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~I 170 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDL 170 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEE
Confidence 111122256789999988754332222379999999999995 5432111011223456677899888765432223577
Q ss_pred EEEe-CCCCceEEeeccCCCCCCcc----eeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCc
Q 020245 201 HCFD-PAHAQWAQVETSGEKPTARS----VFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETL 267 (329)
Q Consensus 201 ~~~d-~~~~~w~~~~~~~~~p~~r~----~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~ 267 (329)
|..+ .+...|+++-.....+.+.. ....+..+++|++.... .. ..-+..||++++
T Consensus 171 Wvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~-----------~~~~~~y~~~~~ 230 (230)
T TIGR01640 171 WVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN-----------PFYIFYYNVGEN 230 (230)
T ss_pred EEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC-----------ceEEEEEeccCC
Confidence 8775 34567988654321112211 12334557788887652 10 113888998764
No 47
>smart00612 Kelch Kelch domain.
Probab=98.69 E-value=4.1e-08 Score=58.38 Aligned_cols=47 Identities=32% Similarity=0.591 Sum_probs=40.6
Q ss_pred eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECC
Q 020245 135 HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQG 184 (329)
Q Consensus 135 ~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 184 (329)
+||++||......++++++||+.+++|+.++++ +.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 589999987666788999999999999999988 68899998887654
No 48
>smart00612 Kelch Kelch domain.
Probab=98.65 E-value=4.7e-08 Score=58.10 Aligned_cols=47 Identities=36% Similarity=0.574 Sum_probs=40.5
Q ss_pred EEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC
Q 020245 84 TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR 134 (329)
Q Consensus 84 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 134 (329)
+||++||.. .....+++++||+.+++|+.++++ |.+|..++++.+++
T Consensus 1 ~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFD-GGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCC-CCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 489999987 456788999999999999999988 78899999887654
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.55 E-value=1.6e-05 Score=64.33 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=95.9
Q ss_pred eEEEeCCCCcEEEEeeCCCCCCCCcceeE-EEECCEEEEEccccCCCCCCCceEEEECCC----CcEEEcccCCCCCCCc
Q 020245 50 LHVFDLETLTWSVADVTGDVPPPRVGVTM-AAVGHTIYMFGGRDGTHKELNELYSFDTRT----NQWTLLSNGDAGPPHR 124 (329)
Q Consensus 50 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~----~~W~~~~~~~~~p~~r 124 (329)
-..||+.+++++.+... ....+++. ..-++++.+.||... ..+.+-.|++.+ ..|.+.... +..+|
T Consensus 48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 34699999999987754 23333332 234679999999863 445566777754 578877642 25779
Q ss_pred ccceeEee-CCeEEEEcccCCCcCcceeEEEEcC-C-----CeEEEecCCC-CCCCCCCCcEEEEECCEEEEEeeeCCCC
Q 020245 125 SYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVV-D-----RKWIQYPSAG-ENCKGRGGPGLIVTQGKIWVVYGFAGVE 196 (329)
Q Consensus 125 ~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~-~-----~~W~~~~~~~-~~~~~~~~~~~~~~~~~l~v~gG~~~~~ 196 (329)
...++..+ +++++|+||.... + ++|-+. . ..|..+.... ..+...+-+..+.-+++||+++.
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~----t-~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an----- 188 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP----T-YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN----- 188 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC----c-ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-----
Confidence 99888886 7899999998732 2 334333 1 1232222211 12456677777788999999987
Q ss_pred cccEEEEeCCCCce-EEeec
Q 020245 197 VDDVHCFDPAHAQW-AQVET 215 (329)
Q Consensus 197 ~~~~~~~d~~~~~w-~~~~~ 215 (329)
..-..||..++++ +.++.
T Consensus 189 -~~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 189 -RGSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred -CCcEEEeCCCCeEEeeCCC
Confidence 4667789998877 56653
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.46 E-value=0.00014 Score=59.55 Aligned_cols=202 Identities=11% Similarity=0.135 Sum_probs=114.2
Q ss_pred CceEEEECCCCcEEEcccCCCCCCCccc-ceeEeeC----C-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCC
Q 020245 99 NELYSFDTRTNQWTLLSNGDAGPPHRSY-HSTAADD----R-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCK 172 (329)
Q Consensus 99 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~~----~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 172 (329)
..+..+||.|++|..++.....+..... ......+ . |++.+...........+++|+..+++|+.+...+. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~--~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPP--H 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCC--C
Confidence 5789999999999999865311010111 1111122 1 56666443222233578999999999999885431 2
Q ss_pred CCCCcEEEEECCEEEEEeeeCCC-CcccEEEEeCCCCceEE-eeccCCCCCCc----ceeEEEEECCEEEEEcCccCCCC
Q 020245 173 GRGGPGLIVTQGKIWVVYGFAGV-EVDDVHCFDPAHAQWAQ-VETSGEKPTAR----SVFSTVGIGKHIVVYGGEVDPSD 246 (329)
Q Consensus 173 ~~~~~~~~~~~~~l~v~gG~~~~-~~~~~~~~d~~~~~w~~-~~~~~~~p~~r----~~~~~~~~~~~i~i~GG~~~~~~ 246 (329)
.......+.++|.+|-+...... ....+..||..+++|+. +.. |..+ .....+.+++.|.++.......
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~- 166 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQKKDTN- 166 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec----CccccccccceEEEEECCEEEEEEecCCCC-
Confidence 12222267789999888754321 22379999999999995 542 3222 2345667788888876532110
Q ss_pred CCcCCCCeeeceeEEEE-cCCceeEeecCCCCCCCCCCCCCc--ceecccccCCcceEEEEcCCCCCCCcccceEEEecc
Q 020245 247 LGHLGAGKFAGELYSLD-TETLVWTRWDDGPGSDHHPGPRGW--CAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPC 323 (329)
Q Consensus 247 ~~~~~~~~~~~~~~~~d-~~~~~W~~~~~~~~~~~~p~~r~~--~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~ 323 (329)
.-+||..+ -....|++.-..+. .+.++.. .....+..+ +.|++.-... . .--+..||++
T Consensus 167 ---------~~~IWvl~d~~~~~W~k~~~i~~---~~~~~~~~~~~~~~~~~~--g~I~~~~~~~-~---~~~~~~y~~~ 228 (230)
T TIGR01640 167 ---------NFDLWVLNDAGKQEWSKLFTVPI---PPLPDLVDDNFLSGFTDK--GEIVLCCEDE-N---PFYIFYYNVG 228 (230)
T ss_pred ---------cEEEEEECCCCCCceeEEEEEcC---cchhhhhhheeEeEEeeC--CEEEEEeCCC-C---ceEEEEEecc
Confidence 24788886 33557987654110 0112111 112333344 4477766421 1 1138889988
Q ss_pred cC
Q 020245 324 LD 325 (329)
Q Consensus 324 ~~ 325 (329)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.45 E-value=4.9e-05 Score=61.59 Aligned_cols=150 Identities=16% Similarity=0.171 Sum_probs=94.3
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCC----CeEEEecCCCCCCCC
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVD----RKWIQYPSAGENCKG 173 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~----~~W~~~~~~~~~~~~ 173 (329)
...-..||+.+++++.+....+. -.+++ ++.-+|++++.||..... ..+-.|++.+ ..|.+..... ..+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~--FCSgg-~~L~dG~ll~tGG~~~G~--~~ir~~~p~~~~~~~~w~e~~~~m--~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDT--FCSGG-AFLPDGRLLQTGGDNDGN--KAIRIFTPCTSDGTCDWTESPNDM--QSG 117 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCC--cccCc-CCCCCCCEEEeCCCCccc--cceEEEecCCCCCCCCceECcccc--cCC
Confidence 44567799999999988765321 12222 233488999999975532 4566777765 5798887543 345
Q ss_pred CCCcEEE-EECCEEEEEeeeCCCCcccEEEEeCCC------CceEEeecc-CCCCCCcceeEEEEECCEEEEEcCccCCC
Q 020245 174 RGGPGLI-VTQGKIWVVYGFAGVEVDDVHCFDPAH------AQWAQVETS-GEKPTARSVFSTVGIGKHIVVYGGEVDPS 245 (329)
Q Consensus 174 ~~~~~~~-~~~~~l~v~gG~~~~~~~~~~~~d~~~------~~w~~~~~~-~~~p~~r~~~~~~~~~~~i~i~GG~~~~~ 245 (329)
|-..++. +-+++++|+||... ..+.|-+.. ..|..+... ...+...+-+..++-+++||+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence 5555554 56899999999762 222333321 122222210 0233455556666668999999873
Q ss_pred CCCcCCCCeeeceeEEEEcCCcee-EeecC
Q 020245 246 DLGHLGAGKFAGELYSLDTETLVW-TRWDD 274 (329)
Q Consensus 246 ~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~ 274 (329)
+..+||.+++++ +.++.
T Consensus 190 ------------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 190 ------------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred ------------CcEEEeCCCCeEEeeCCC
Confidence 567889999976 77776
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.35 E-value=4.7e-05 Score=61.45 Aligned_cols=170 Identities=19% Similarity=0.275 Sum_probs=100.2
Q ss_pred CCCcceeEEEE-C---C---EEEEEcCccCCCCccCCceEEEeCCCCc--------EEEEeeCCCCCCCCcceeEEEEC-
Q 020245 19 GARSSHAITIV-G---Q---KVYAFGGEFTPRVPVDNNLHVFDLETLT--------WSVADVTGDVPPPRVGVTMAAVG- 82 (329)
Q Consensus 19 ~~r~~~~~~~~-~---~---~l~~~GG~~~~~~~~~~~~~~~d~~~~~--------W~~~~~~~~~p~~r~~~~~~~~~- 82 (329)
+|..+.+++.+ + + ..+|.||.+. +...++++|........ .+....-+++|.+|++|++-++.
T Consensus 20 PPLR~PAv~~~~~~~~~~~~~YlIHGGrTP-NNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 20 PPLRCPAVCHLSDPSDGEPEQYLIHGGRTP-NNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCccEeeecCCCCCCeeeEEecCCcCC-CcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 35555666665 2 1 4555677654 44566888887655322 23334456789999999987763
Q ss_pred ---CEEEEEccccC-------------CCCCCCceEEEECCCCcE--EEcccCCCCCCCcccceeEeeCCeEEEEcccCC
Q 020245 83 ---HTIYMFGGRDG-------------THKELNELYSFDTRTNQW--TLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGV 144 (329)
Q Consensus 83 ---~~iyv~GG~~~-------------~~~~~~~~~~~d~~~~~W--~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 144 (329)
....+|||... --.+...|+.+|++-+-. ..++.. ..+.+.|.+..-++.+|++||..-
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl---~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPEL---QDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhh---cCCeEEEEEEecCceEEEEccEEc
Confidence 35889999763 112345677888764433 333333 456788888888999999999654
Q ss_pred Cc--CcceeEEEEcC--CC-eEEEecCCCCCCCCCCCcEEEE---ECCEEEEEeeeCCC
Q 020245 145 SG--RLNDLWGFDVV--DR-KWIQYPSAGENCKGRGGPGLIV---TQGKIWVVYGFAGV 195 (329)
Q Consensus 145 ~~--~~~~~~~~~~~--~~-~W~~~~~~~~~~~~~~~~~~~~---~~~~l~v~gG~~~~ 195 (329)
.. ....+++...+ -+ -......+ ..+....++.+ ..+..+|+||+..+
T Consensus 176 ~sd~Rpp~l~rlkVdLllGSP~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 176 ESDSRPPRLYRLKVDLLLGSPAVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred cCCCCCCcEEEEEEeecCCCceeEEEEC---CCCceEeeeeEeecCCCceEEEeccccc
Confidence 43 34455555322 11 11222222 12333222222 23668888998765
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.25 E-value=0.003 Score=56.22 Aligned_cols=199 Identities=19% Similarity=0.248 Sum_probs=110.9
Q ss_pred eEEEECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCCC--CC---CCCcceeEEEECCEEEEEccccCCCCC
Q 020245 25 AITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTGD--VP---PPRVGVTMAAVGHTIYMFGGRDGTHKE 97 (329)
Q Consensus 25 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~--~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~ 97 (329)
+-++.+++||+.... ..++++|..+.+ |+.-..... .+ ..+.....+..++++|+.+.
T Consensus 64 sPvv~~~~vy~~~~~--------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRA--------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------- 128 (394)
T ss_pred ccEEECCEEEEECCC--------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------
Confidence 345678899997642 468999987544 764322100 00 11223345677889987532
Q ss_pred CCceEEEECCCC--cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe--EEEecCCCCCCCC
Q 020245 98 LNELYSFDTRTN--QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK--WIQYPSAGENCKG 173 (329)
Q Consensus 98 ~~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~--W~~~~~~~~~~~~ 173 (329)
...++.+|..+. .|+.-... . ...+.+..++.+|+..+. ..++.+|+.+++ |+.-...+.. ..
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~----~--~~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~~-~~ 195 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAG----E--ALSRPVVSDGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPSL-TL 195 (394)
T ss_pred CCEEEEEECCCCCCcccccCCC----c--eecCCEEECCEEEEECCC------CEEEEEEccCCCEeeeecCCCCcc-cc
Confidence 246999998765 58754321 1 122334457888875432 468999998875 8775443211 11
Q ss_pred CCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCC--ceEEeeccCC--CCCCc---ceeEEEEECCEEEEEcCccCCCC
Q 020245 174 RGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHA--QWAQVETSGE--KPTAR---SVFSTVGIGKHIVVYGGEVDPSD 246 (329)
Q Consensus 174 ~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~--~w~~~~~~~~--~p~~r---~~~~~~~~~~~i~i~GG~~~~~~ 246 (329)
+...+.+..++.+|+..+ + ..++.+|.++. .|+.-..... ....| ...+.++.++.+|+.+.
T Consensus 196 ~~~~sP~v~~~~v~~~~~-~----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~------ 264 (394)
T PRK11138 196 RGESAPATAFGGAIVGGD-N----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY------ 264 (394)
T ss_pred cCCCCCEEECCEEEEEcC-C----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc------
Confidence 222333455676666432 2 46778887665 4764321100 00001 11234456888887653
Q ss_pred CCcCCCCeeeceeEEEEcCCc--eeEe
Q 020245 247 LGHLGAGKFAGELYSLDTETL--VWTR 271 (329)
Q Consensus 247 ~~~~~~~~~~~~~~~~d~~~~--~W~~ 271 (329)
...++++|+++. .|+.
T Consensus 265 ---------~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 265 ---------NGNLVALDLRSGQIVWKR 282 (394)
T ss_pred ---------CCeEEEEECCCCCEEEee
Confidence 246889998865 4865
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.01 E-value=0.0095 Score=53.00 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=110.1
Q ss_pred ceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCC--cEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCc
Q 020245 23 SHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETL--TWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNE 100 (329)
Q Consensus 23 ~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 100 (329)
..+.++.+++||+.+. ...++.+|..+. .|+.-.. . ....+.++.++.+|+..+ ...
T Consensus 113 ~~~~~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~-----~-~~~ssP~v~~~~v~v~~~-------~g~ 171 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE--------KGQVYALNAEDGEVAWQTKVA-----G-EALSRPVVSDGLVLVHTS-------NGM 171 (394)
T ss_pred ccccEEECCEEEEEcC--------CCEEEEEECCCCCCcccccCC-----C-ceecCCEEECCEEEEECC-------CCE
Confidence 3445667889887442 157999998765 4764321 1 112333556788887533 236
Q ss_pred eEEEECCCCc--EEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe--EEEecCCCCCCC----
Q 020245 101 LYSFDTRTNQ--WTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK--WIQYPSAGENCK---- 172 (329)
Q Consensus 101 ~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~--W~~~~~~~~~~~---- 172 (329)
++.+|+.+.+ |+.-...+. ...+...+-+..++.+|+..+. ..++.+|+.+.+ |+.....+....
T Consensus 172 l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 172 LQALNESDGAVKWTVNLDVPS-LTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred EEEEEccCCCEeeeecCCCCc-ccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccchhc
Confidence 9999998764 776433210 0112223334456677664432 457888888764 765332210000
Q ss_pred -CCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCC--ceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCc
Q 020245 173 -GRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHA--QWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGH 249 (329)
Q Consensus 173 -~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~--~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~ 249 (329)
.....+.++.++.+|+.+. + ..++.+|..+. .|+.-.. .. ...+..++.||+...
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~-~----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~~~--------- 302 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAY-N----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLVDQ--------- 302 (394)
T ss_pred ccccCCCcEEECCEEEEEEc-C----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEEcC---------
Confidence 0112334567888887653 2 47899998765 4765321 11 124566889998754
Q ss_pred CCCCeeeceeEEEEcCCc--eeEe
Q 020245 250 LGAGKFAGELYSLDTETL--VWTR 271 (329)
Q Consensus 250 ~~~~~~~~~~~~~d~~~~--~W~~ 271 (329)
...++.+|.++. .|+.
T Consensus 303 ------~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 303 ------NDRVYALDTRGGVELWSQ 320 (394)
T ss_pred ------CCeEEEEECCCCcEEEcc
Confidence 247999998765 4754
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.71 E-value=0.03 Score=49.46 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=104.6
Q ss_pred eeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCce
Q 020245 24 HAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNEL 101 (329)
Q Consensus 24 ~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 101 (329)
.+.++.+++||+.+.. ..+++||+.+.+ |+.-... +...+.++.++.+|+.+. ...+
T Consensus 59 ~~p~v~~~~v~v~~~~--------g~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~-------~g~l 117 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD--------GTVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGTE-------KGEV 117 (377)
T ss_pred cceEEECCEEEEECCC--------CeEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEcC-------CCEE
Confidence 3445668888886542 469999987655 6542221 122234455777886532 2479
Q ss_pred EEEECCCC--cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe--EEEecCCCCCCCCCCCc
Q 020245 102 YSFDTRTN--QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK--WIQYPSAGENCKGRGGP 177 (329)
Q Consensus 102 ~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~--W~~~~~~~~~~~~~~~~ 177 (329)
+.+|..+. .|+..... . .....+..++++|+..+. ..++.+|+++++ |+.-...+.. ..+...
T Consensus 118 ~ald~~tG~~~W~~~~~~-----~-~~~~p~v~~~~v~v~~~~------g~l~a~d~~tG~~~W~~~~~~~~~-~~~~~~ 184 (377)
T TIGR03300 118 IALDAEDGKELWRAKLSS-----E-VLSPPLVANGLVVVRTND------GRLTALDAATGERLWTYSRVTPAL-TLRGSA 184 (377)
T ss_pred EEEECCCCcEeeeeccCc-----e-eecCCEEECCEEEEECCC------CeEEEEEcCCCceeeEEccCCCce-eecCCC
Confidence 99998765 47654221 1 122333457777775431 468999998764 7754433211 112223
Q ss_pred EEEEECCEEEEEeeeCCCCcccEEEEeCCCC--ceEEeeccCC--CCCCc---ceeEEEEECCEEEEEcCccCCCCCCcC
Q 020245 178 GLIVTQGKIWVVYGFAGVEVDDVHCFDPAHA--QWAQVETSGE--KPTAR---SVFSTVGIGKHIVVYGGEVDPSDLGHL 250 (329)
Q Consensus 178 ~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~--~w~~~~~~~~--~p~~r---~~~~~~~~~~~i~i~GG~~~~~~~~~~ 250 (329)
+.+..++.+| ++..+ ..++.+|+.+. .|+.-..... ....+ .....+..++.+|+...
T Consensus 185 sp~~~~~~v~-~~~~~----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~---------- 249 (377)
T TIGR03300 185 SPVIADGGVL-VGFAG----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY---------- 249 (377)
T ss_pred CCEEECCEEE-EECCC----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----------
Confidence 3445566554 33322 47888888665 4754321100 00001 11223345777777543
Q ss_pred CCCeeeceeEEEEcCCc--eeEe
Q 020245 251 GAGKFAGELYSLDTETL--VWTR 271 (329)
Q Consensus 251 ~~~~~~~~~~~~d~~~~--~W~~ 271 (329)
...+++||+++. .|+.
T Consensus 250 -----~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 250 -----QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred -----CCEEEEEECCCCcEEEee
Confidence 246889998755 4654
No 56
>PRK13684 Ycf48-like protein; Provisional
Probab=97.59 E-value=0.04 Score=47.73 Aligned_cols=240 Identities=13% Similarity=0.180 Sum_probs=120.1
Q ss_pred ceeEEeccCCCCCCC-CcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC-C
Q 020245 6 GTWIKLDQKGSGPGA-RSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG-H 83 (329)
Q Consensus 6 ~~W~~~~~~~~~p~~-r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~ 83 (329)
.+|+++... .|.. ....++...++..++.|-. ..+++=+-...+|+++......|. .......++ +
T Consensus 76 ~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~--------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~ 143 (334)
T PRK13684 76 ETWEERSLD--LPEENFRLISISFKGDEGWIVGQP--------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPG 143 (334)
T ss_pred CCceECccC--CcccccceeeeEEcCCcEEEeCCC--------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCC
Confidence 379987643 2212 2223333345566665521 335554444578998864321222 222333333 4
Q ss_pred EEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEE-EcCCCeEE
Q 020245 84 TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGF-DVVDRKWI 162 (329)
Q Consensus 84 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~-~~~~~~W~ 162 (329)
.+++.|... .+++-+-.-.+|+.+.... .-..+.+....+..+++.|... .++.- +....+|+
T Consensus 144 ~~~~~g~~G-------~i~~S~DgG~tW~~~~~~~----~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~ 207 (334)
T PRK13684 144 TAEMATNVG-------AIYRTTDGGKNWEALVEDA----AGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWT 207 (334)
T ss_pred cceeeeccc-------eEEEECCCCCCceeCcCCC----cceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEE
Confidence 466665332 4666555677999887642 2233334444444444433322 33333 34446899
Q ss_pred EecCCCCCCCCCCCcEEEE-ECCEEEEEeeeCCCCcccEEEE--eCCCCceEEeeccCCCCCCcceeEEEEE-CCEEEEE
Q 020245 163 QYPSAGENCKGRGGPGLIV-TQGKIWVVYGFAGVEVDDVHCF--DPAHAQWAQVETSGEKPTARSVFSTVGI-GKHIVVY 238 (329)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~~~l~v~gG~~~~~~~~~~~~--d~~~~~w~~~~~~~~~p~~r~~~~~~~~-~~~i~i~ 238 (329)
.+... ....-.++.. .++.++++|.. -..++ +..-.+|+.+.... .......++++.. ++.++++
T Consensus 208 ~~~~~----~~~~l~~i~~~~~g~~~~vg~~------G~~~~~s~d~G~sW~~~~~~~-~~~~~~l~~v~~~~~~~~~~~ 276 (334)
T PRK13684 208 PHQRN----SSRRLQSMGFQPDGNLWMLARG------GQIRFNDPDDLESWSKPIIPE-ITNGYGYLDLAYRTPGEIWAG 276 (334)
T ss_pred EeeCC----CcccceeeeEcCCCCEEEEecC------CEEEEccCCCCCccccccCCc-cccccceeeEEEcCCCCEEEE
Confidence 88653 3333334333 46778887642 22233 23446898764210 0011122233333 5578888
Q ss_pred cCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCC
Q 020245 239 GGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGN 307 (329)
Q Consensus 239 GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~ 307 (329)
|.. ..++.-.....+|+.++. .. ..+... +.++..++ +..|+.|..
T Consensus 277 G~~---------------G~v~~S~d~G~tW~~~~~---~~--~~~~~~--~~~~~~~~-~~~~~~G~~ 322 (334)
T PRK13684 277 GGN---------------GTLLVSKDGGKTWEKDPV---GE--EVPSNF--YKIVFLDP-EKGFVLGQR 322 (334)
T ss_pred cCC---------------CeEEEeCCCCCCCeECCc---CC--CCCcce--EEEEEeCC-CceEEECCC
Confidence 752 234444455679999864 01 112234 56666655 568887763
No 57
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.58 E-value=0.036 Score=46.90 Aligned_cols=244 Identities=14% Similarity=0.213 Sum_probs=109.2
Q ss_pred CCcceeEEeccCCCCCCCCcceeEEEE-CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE
Q 020245 3 SAKGTWIKLDQKGSGPGARSSHAITIV-GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV 81 (329)
Q Consensus 3 ~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 81 (329)
.....|+++.. |.......+... .++-|++|-. ..+++=+--..+|+........+......++...
T Consensus 3 ~~~~~W~~v~l----~t~~~l~dV~F~d~~~G~~VG~~--------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~ 70 (302)
T PF14870_consen 3 ASGNSWQQVSL----PTDKPLLDVAFVDPNHGWAVGAY--------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD 70 (302)
T ss_dssp -SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT--------TEEEEESSTTSS-EE-----S-----EEEEEEEE
T ss_pred ccCCCcEEeec----CCCCceEEEEEecCCEEEEEecC--------CEEEEECCCCccccccccCCCccceeeEEEEEec
Confidence 45678999974 444555555555 4588888752 2344444446789887754322212223334456
Q ss_pred CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEe-eCCeEEEEcccCCCcCcceeEEEEcCCCe
Q 020245 82 GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAA-DDRHVYIFGGCGVSGRLNDLWGFDVVDRK 160 (329)
Q Consensus 82 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 160 (329)
++..|+.|-.. -++.-.-...+|++++.... .+-..+.+.. -++.+.+++.. ..+++-.-.-.+
T Consensus 71 ~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~~~--lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~t 135 (302)
T PF14870_consen 71 GNEGWIVGEPG-------LLLHTTDGGKTWERVPLSSK--LPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKT 135 (302)
T ss_dssp TTEEEEEEETT-------EEEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEETT--------EEEESSTTSS
T ss_pred CCceEEEcCCc-------eEEEecCCCCCcEEeecCCC--CCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCC
Confidence 78899987322 34444445678999875432 2223333333 35577776543 456666667779
Q ss_pred EEEecCCCCCCCCCCCcEEE-EECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE-CCEEEEE
Q 020245 161 WIQYPSAGENCKGRGGPGLI-VTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI-GKHIVVY 238 (329)
Q Consensus 161 W~~~~~~~~~~~~~~~~~~~-~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~-~~~i~i~ 238 (329)
|+.+.... . ....... ..++++++++. .+ +-+...|+....|+..... ..|.-.+|... ++.|+++
T Consensus 136 W~~~~~~~---~-gs~~~~~r~~dG~~vavs~-~G---~~~~s~~~G~~~w~~~~r~----~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 136 WQAVVSET---S-GSINDITRSSDGRYVAVSS-RG---NFYSSWDPGQTTWQPHNRN----SSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp EEEEE-S--------EEEEEE-TTS-EEEEET-TS---SEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEE
T ss_pred eeEcccCC---c-ceeEeEEECCCCcEEEEEC-cc---cEEEEecCCCccceEEccC----ccceehhceecCCCCEEEE
Confidence 99987652 2 2222223 33555555542 22 2344668888889888643 33444444333 5577665
Q ss_pred cCccCCCCCCcCCCCeeeceeEEEE--cCCceeEeecCCCCCCCCCC-CCCcceecccccCCcceEEEEcCCC
Q 020245 239 GGEVDPSDLGHLGAGKFAGELYSLD--TETLVWTRWDDGPGSDHHPG-PRGWCAFAGGLRGGKHGLLVYGGNS 308 (329)
Q Consensus 239 GG~~~~~~~~~~~~~~~~~~~~~~d--~~~~~W~~~~~~~~~~~~p~-~r~~~~~~~~~~~~~~~i~i~GG~~ 308 (329)
. . -..+..-+ ....+|.+.-. |. .+.+.-..++..++ +.+++.||..
T Consensus 204 ~-~--------------Gg~~~~s~~~~~~~~w~~~~~-------~~~~~~~~~ld~a~~~~-~~~wa~gg~G 253 (302)
T PF14870_consen 204 A-R--------------GGQIQFSDDPDDGETWSEPII-------PIKTNGYGILDLAYRPP-NEIWAVGGSG 253 (302)
T ss_dssp E-T--------------TTEEEEEE-TTEEEEE---B--------TTSS--S-EEEEEESSS-S-EEEEESTT
T ss_pred e-C--------------CcEEEEccCCCCccccccccC-------CcccCceeeEEEEecCC-CCEEEEeCCc
Confidence 4 1 01344444 45667887443 33 22221144455554 6799999864
No 58
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.58 E-value=0.036 Score=46.90 Aligned_cols=243 Identities=15% Similarity=0.193 Sum_probs=108.0
Q ss_pred ceeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEE-ECCE
Q 020245 6 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHT 84 (329)
Q Consensus 6 ~~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~ 84 (329)
.+|+.+....+.+......++...++..|+.|-. .-+++-.-...+|++++....+| ...+.+.+ -++.
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~--------g~ll~T~DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~ 116 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP--------GLLLHTTDGGKTWERVPLSSKLP--GSPFGITALGDGS 116 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET--------TEEEEESSTTSS-EE----TT-S--S-EEEEEEEETTE
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC--------ceEEEecCCCCCcEEeecCCCCC--CCeeEEEEcCCCc
Confidence 4799887542222123334444457889987731 23444445578899987543233 23334443 4567
Q ss_pred EEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEe
Q 020245 85 IYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQY 164 (329)
Q Consensus 85 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~ 164 (329)
+.++|.. ..+++-.-.-.+|+.+.... ..-.......-++++++++... +-+...++-...|+..
T Consensus 117 ~~l~~~~-------G~iy~T~DgG~tW~~~~~~~---~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~ 181 (302)
T PF14870_consen 117 AELAGDR-------GAIYRTTDGGKTWQAVVSET---SGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPH 181 (302)
T ss_dssp EEEEETT---------EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEE
T ss_pred EEEEcCC-------CcEEEeCCCCCCeeEcccCC---cceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEE
Confidence 7777643 35666555677999887652 2211112222355665565432 2334567777889998
Q ss_pred cCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEe--CCCCceEEeeccCCCCCCcceeEEEEE--CCEEEEEcC
Q 020245 165 PSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFD--PAHAQWAQVETSGEKPTARSVFSTVGI--GKHIVVYGG 240 (329)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d--~~~~~w~~~~~~~~~p~~r~~~~~~~~--~~~i~i~GG 240 (329)
.... ..|.......-++.++++. .. ..+.+=+ ...++|.+... +.....++.--+.+ ++.+++.||
T Consensus 182 ~r~~---~~riq~~gf~~~~~lw~~~-~G----g~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 182 NRNS---SRRIQSMGFSPDGNLWMLA-RG----GQIQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp E--S---SS-EEEEEE-TTS-EEEEE-TT----TEEEEEE-TTEEEEE---B---TTSS--S-EEEEEESSSS-EEEEES
T ss_pred ccCc---cceehhceecCCCCEEEEe-CC----cEEEEccCCCCccccccccC--CcccCceeeEEEEecCCCCEEEEeC
Confidence 8762 3343433344567788875 21 2444433 34557776321 11122233332233 569999998
Q ss_pred ccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcC
Q 020245 241 EVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGG 306 (329)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG 306 (329)
. ..+++-.-..++|++.+. . .+.+--. ..+...++ ++-+++|-
T Consensus 252 ~---------------G~l~~S~DgGktW~~~~~---~--~~~~~n~--~~i~f~~~-~~gf~lG~ 294 (302)
T PF14870_consen 252 S---------------GTLLVSTDGGKTWQKDRV---G--ENVPSNL--YRIVFVNP-DKGFVLGQ 294 (302)
T ss_dssp T---------------T-EEEESSTTSS-EE-GG---G--TTSSS-----EEEEEET-TEEEEE-S
T ss_pred C---------------ccEEEeCCCCccceECcc---c--cCCCCce--EEEEEcCC-CceEEECC
Confidence 4 457777777889999875 1 1223233 45555554 56888885
No 59
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.31 E-value=0.038 Score=46.26 Aligned_cols=112 Identities=15% Similarity=0.273 Sum_probs=70.3
Q ss_pred CCCceEEEECCCCcEEEcccCCCCCCCcccceeEee-CCeEEEEcccCCCc-CcceeEEEEcCCCeEEEecCCC--CCCC
Q 020245 97 ELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSG-RLNDLWGFDVVDRKWIQYPSAG--ENCK 172 (329)
Q Consensus 97 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~~~~~~~~~~~W~~~~~~~--~~~~ 172 (329)
....+..||..+.+|..+... -... -..+... ++++|+.|-....+ ....+..||..+++|+.++... ..|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 467899999999999988765 1121 1222223 66777777655444 5678999999999999998842 2333
Q ss_pred CCCCcEEEEEC-CEEEEEeeeCCCCcccEEEEeCCCCceEEeec
Q 020245 173 GRGGPGLIVTQ-GKIWVVYGFAGVEVDDVHCFDPAHAQWAQVET 215 (329)
Q Consensus 173 ~~~~~~~~~~~-~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~ 215 (329)
+.........+ +.+++.|.. ......+..|| ..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRS-ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEecee-cCCCceEEEEc--CCceEeccc
Confidence 32222222223 456766654 33345666774 568988875
No 60
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=97.25 E-value=0.064 Score=42.49 Aligned_cols=154 Identities=16% Similarity=0.264 Sum_probs=82.3
Q ss_pred eeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcE--EEEeeC-CCCCCCCcceeEEEEC-CEEEEEccccCCCCCCC
Q 020245 24 HAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTW--SVADVT-GDVPPPRVGVTMAAVG-HTIYMFGGRDGTHKELN 99 (329)
Q Consensus 24 ~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W--~~~~~~-~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~ 99 (329)
-+++...+++|+|-| +.+|+++...... +.+... ..+| ....++..... +++|+|=| +
T Consensus 10 DA~~~~~g~~y~FkG---------~~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg--------~ 71 (194)
T cd00094 10 DAVTTLRGELYFFKG---------RYFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG--------D 71 (194)
T ss_pred CeEEEeCCEEEEEeC---------CEEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC--------C
Confidence 445556789999988 5688887652111 222221 1122 23444443333 78999955 3
Q ss_pred ceEEEECCCCcE---EEcccCCCCCC-CcccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCeEEE-----ecC-CC
Q 020245 100 ELYSFDTRTNQW---TLLSNGDAGPP-HRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQ-----YPS-AG 168 (329)
Q Consensus 100 ~~~~~d~~~~~W---~~~~~~~~~p~-~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~-----~~~-~~ 168 (329)
.+|+||..+... +.+...+.++. ..-.++.... ++++|++-| +..++||...++... +.. -+
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~ 144 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFP 144 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 588887664222 11111111111 1122222222 689999988 678899876665421 111 01
Q ss_pred CCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCc
Q 020245 169 ENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQ 209 (329)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~ 209 (329)
..|. ....+....++++|++-| +..++||..+.+
T Consensus 145 g~p~-~idaa~~~~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 145 GVPD-KVDAAFRWLDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred CcCC-CcceeEEeCCCcEEEEEC------CEEEEEeCccce
Confidence 1111 123333333488999987 799999987665
No 61
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=97.24 E-value=0.084 Score=43.47 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=108.0
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCC-----CCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEE
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLE-----TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSF 104 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~-----~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 104 (329)
++++|++.+... +.++.|... .++....-. +|.+-.+...++.++.+|.- ...++.+.+|
T Consensus 30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~---Lp~~~~GtG~vVYngslYY~------~~~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYK---LPYPWQGTGHVVYNGSLYYN------KYNSRNIVKY 94 (250)
T ss_pred CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEE---EeceeccCCeEEECCcEEEE------ecCCceEEEE
Confidence 568999888654 356655422 222222222 56677778888999999983 5567899999
Q ss_pred ECCCCcEE---EcccCCC---CCCCccc---ceeEeeCCeEEEEcccCCCcCcceeEEEEcCCC----eEEEecCCCCCC
Q 020245 105 DTRTNQWT---LLSNGDA---GPPHRSY---HSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDR----KWIQYPSAGENC 171 (329)
Q Consensus 105 d~~~~~W~---~~~~~~~---~p~~r~~---~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~----~W~~~~~~~~~~ 171 (329)
|+.+++-. .++.... .|....+ .-.++.+.-|+||=...+..-.-.+-+.|+.+- +|..- . +
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~--~---~ 169 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS--Y---P 169 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec--c---C
Confidence 99988655 3433321 1111111 223334556777755444332234556666654 45532 2 1
Q ss_pred CCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE---CCEEEEEc
Q 020245 172 KGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI---GKHIVVYG 239 (329)
Q Consensus 172 ~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~---~~~i~i~G 239 (329)
. +....+.++=|.||++.........-.+.||..+++-..+.. ..+.+-..++++.+ +.+||+.-
T Consensus 170 k-~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 170 K-RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred c-hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 2 223334455577999876654444567889998776665443 44445556666666 45888875
No 62
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.23 E-value=0.088 Score=43.43 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=112.9
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE--CCEEEEEccccCCCCCCCceEEEECC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV--GHTIYMFGGRDGTHKELNELYSFDTR 107 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~ 107 (329)
++.||+.--. ...++++|+.+.+-..+... . -.+++.. ++.+|+.... .+..+|+.
T Consensus 11 ~g~l~~~D~~-------~~~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDIP-------GGRIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADSG--------GIAVVDPD 68 (246)
T ss_dssp TTEEEEEETT-------TTEEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEETT--------CEEEEETT
T ss_pred CCEEEEEEcC-------CCEEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEcC--------ceEEEecC
Confidence 5688887432 26899999998876655542 2 2334444 6788887532 35667999
Q ss_pred CCcEEEcccCC--CCCCCcccceeEeeCCeEEEEcccCCC-cCc--ceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEE-
Q 020245 108 TNQWTLLSNGD--AGPPHRSYHSTAADDRHVYIFGGCGVS-GRL--NDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIV- 181 (329)
Q Consensus 108 ~~~W~~~~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~--~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~- 181 (329)
+++++.+.... ..+..+..-.++.-++++|+---.... ... ..++++++. .+.+.+.... . .....+.
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~----~-~pNGi~~s 142 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL----G-FPNGIAFS 142 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE----S-SEEEEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc----c-cccceEEC
Confidence 99988777652 113445555555567888875332211 112 679999999 6666555431 1 1123333
Q ss_pred ECC-EEEEEeeeCCCCcccEEEEeCCCCc--eEEeeccCCCCCCc-ceeEEEEE-CCEEEEEcCccCCCCCCcCCCCeee
Q 020245 182 TQG-KIWVVYGFAGVEVDDVHCFDPAHAQ--WAQVETSGEKPTAR-SVFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFA 256 (329)
Q Consensus 182 ~~~-~l~v~gG~~~~~~~~~~~~d~~~~~--w~~~~~~~~~p~~r-~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~ 256 (329)
.++ .+|+.-- ....+++|++.... +.........+... ..-++++- +++||+..-. .
T Consensus 143 ~dg~~lyv~ds----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--------------~ 204 (246)
T PF08450_consen 143 PDGKTLYVADS----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--------------G 204 (246)
T ss_dssp TTSSEEEEEET----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET--------------T
T ss_pred Ccchheeeccc----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC--------------C
Confidence 334 4776532 33679999986443 32221111222221 12233333 6789887321 2
Q ss_pred ceeEEEEcCCceeEeecC
Q 020245 257 GELYSLDTETLVWTRWDD 274 (329)
Q Consensus 257 ~~~~~~d~~~~~W~~~~~ 274 (329)
..|++||++...-..+..
T Consensus 205 ~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 205 GRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp TEEEEEETTSCEEEEEE-
T ss_pred CEEEEECCCccEEEEEcC
Confidence 589999999887888875
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.21 E-value=0.015 Score=48.55 Aligned_cols=112 Identities=14% Similarity=0.243 Sum_probs=71.4
Q ss_pred CCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEE-ECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccC--CCCCCC
Q 020245 47 DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNG--DAGPPH 123 (329)
Q Consensus 47 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~--~~~p~~ 123 (329)
...++.||+.+.+|..+..-. .... ..+.. -+++||+.|-..........+..||..+++|..++.. ...|.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i---~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI---SGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc---eEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 378999999999999876531 1211 22332 3678888886653333567799999999999988873 234444
Q ss_pred cccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecC
Q 020245 124 RSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPS 166 (329)
Q Consensus 124 r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~ 166 (329)
......... ...+++.|.. . .-...+..| ...+|..+..
T Consensus 91 v~a~~~~~~d~~~~~~aG~~-~-~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRS-A-NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEEEEeeccCCceEEEecee-c-CCCceEEEE--cCCceEeccc
Confidence 433333222 3467777665 2 222345555 6668999887
No 64
>PRK13684 Ycf48-like protein; Provisional
Probab=97.09 E-value=0.16 Score=43.99 Aligned_cols=237 Identities=13% Similarity=0.177 Sum_probs=120.6
Q ss_pred CcceeEEeccCCCCCCCCcceeEEEEC-CEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCc-ceeEEEE
Q 020245 4 AKGTWIKLDQKGSGPGARSSHAITIVG-QKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRV-GVTMAAV 81 (329)
Q Consensus 4 ~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~ 81 (329)
....|+.... |......+++..+ ++.|++|-. ..+++=.-...+|+.+... .|.... .......
T Consensus 33 ~~~~W~~~~~----~~~~~l~~v~F~d~~~g~avG~~--------G~il~T~DgG~tW~~~~~~--~~~~~~~l~~v~~~ 98 (334)
T PRK13684 33 SSSPWQVIDL----PTEANLLDIAFTDPNHGWLVGSN--------RTLLETNDGGETWEERSLD--LPEENFRLISISFK 98 (334)
T ss_pred cCCCcEEEec----CCCCceEEEEEeCCCcEEEEECC--------CEEEEEcCCCCCceECccC--CcccccceeeeEEc
Confidence 3458988864 3344445555444 466776631 2344443445689986543 221211 2223333
Q ss_pred CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCe
Q 020245 82 GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRK 160 (329)
Q Consensus 82 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 160 (329)
++..|+.|.. ..+++=+-.-.+|+++......|.. ......+ ++.+++.|.. ..+++-+..-.+
T Consensus 99 ~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~t 163 (334)
T PRK13684 99 GDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPGS--PYLITALGPGTAEMATNV------GAIYRTTDGGKN 163 (334)
T ss_pred CCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCCC--ceEEEEECCCcceeeecc------ceEEEECCCCCC
Confidence 5556776532 2345433345689988643111221 1222222 3456665542 346666667789
Q ss_pred EEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEE-eCCCCceEEeeccCCCCCCcceeEEEEE-CCEEEEE
Q 020245 161 WIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCF-DPAHAQWAQVETSGEKPTARSVFSTVGI-GKHIVVY 238 (329)
Q Consensus 161 W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~-d~~~~~w~~~~~~~~~p~~r~~~~~~~~-~~~i~i~ 238 (329)
|+.+.... ....+.+....+..++..|.. ..++.- +....+|+.+.. +..+..++++.. ++.++++
T Consensus 164 W~~~~~~~----~g~~~~i~~~~~g~~v~~g~~----G~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 164 WEALVEDA----AGVVRNLRRSPDGKYVAVSSR----GNFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWML 231 (334)
T ss_pred ceeCcCCC----cceEEEEEECCCCeEEEEeCC----ceEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEE
Confidence 99987652 223344444444444544433 234433 444567988853 233444444443 5688888
Q ss_pred cCccCCCCCCcCCCCeeeceeEEE--EcCCceeEeecCCCCCCCCCCC---CCcceecccccCCcceEEEEcCC
Q 020245 239 GGEVDPSDLGHLGAGKFAGELYSL--DTETLVWTRWDDGPGSDHHPGP---RGWCAFAGGLRGGKHGLLVYGGN 307 (329)
Q Consensus 239 GG~~~~~~~~~~~~~~~~~~~~~~--d~~~~~W~~~~~~~~~~~~p~~---r~~~~~~~~~~~~~~~i~i~GG~ 307 (329)
|.. ...++ +-...+|+.+.. |.. ... ++++..++ +.++++|..
T Consensus 232 g~~----------------G~~~~~s~d~G~sW~~~~~-------~~~~~~~~l--~~v~~~~~-~~~~~~G~~ 279 (334)
T PRK13684 232 ARG----------------GQIRFNDPDDLESWSKPII-------PEITNGYGY--LDLAYRTP-GEIWAGGGN 279 (334)
T ss_pred ecC----------------CEEEEccCCCCCccccccC-------Cccccccce--eeEEEcCC-CCEEEEcCC
Confidence 752 22233 334568998764 321 222 34444433 558888764
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.05 E-value=0.06 Score=46.77 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=78.6
Q ss_pred ECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcc-----eeEEE-
Q 020245 81 VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLN-----DLWGF- 154 (329)
Q Consensus 81 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~-----~~~~~- 154 (329)
.+++|+.++.. .....||+.+..-...+.+ +.+.....++.++++||++.......... .++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l---~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRL---HSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCC---CCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48889888543 4589999999887766665 45555567777899999998764432211 44555
Q ss_pred -E--------cCCCeEEEecCCCCCCCCCC----CcEEEEE-CCEEEE-EeeeCCCCcccEEEEeCCCCceEEeeccCCC
Q 020245 155 -D--------VVDRKWIQYPSAGENCKGRG----GPGLIVT-QGKIWV-VYGFAGVEVDDVHCFDPAHAQWAQVETSGEK 219 (329)
Q Consensus 155 -~--------~~~~~W~~~~~~~~~~~~~~----~~~~~~~-~~~l~v-~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~ 219 (329)
+ ...-.|+.+++.+.....+. -.+.+++ +..|+| +-+.. .-.+.||..+.+|++...= .+
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----~GTysfDt~~~~W~~~GdW-~L 219 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----WGTYSFDTESHEWRKHGDW-ML 219 (342)
T ss_pred cccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----eEEEEEEcCCcceeeccce-ec
Confidence 3 22337888877542212211 2333445 566777 33211 2589999999999999743 34
Q ss_pred C
Q 020245 220 P 220 (329)
Q Consensus 220 p 220 (329)
|
T Consensus 220 P 220 (342)
T PF07893_consen 220 P 220 (342)
T ss_pred C
Confidence 4
No 66
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.98 E-value=0.043 Score=47.66 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=75.3
Q ss_pred ECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCC----CceEEE
Q 020245 29 VGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKEL----NELYSF 104 (329)
Q Consensus 29 ~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~~ 104 (329)
.+++|+..... ....+||..+..-...|. ++.+...-.++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~---l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPR---LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCC---CCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 48899998654 347889999877665555 334455557788899999998765321110 044444
Q ss_pred --E--------CCCCcEEEcccCCCCCCCcc----cceeEee-CCeEEE-EcccCCCcCcceeEEEEcCCCeEEEecCC
Q 020245 105 --D--------TRTNQWTLLSNGDAGPPHRS----YHSTAAD-DRHVYI-FGGCGVSGRLNDLWGFDVVDRKWIQYPSA 167 (329)
Q Consensus 105 --d--------~~~~~W~~~~~~~~~p~~r~----~~~~~~~-~~~i~v-~GG~~~~~~~~~~~~~~~~~~~W~~~~~~ 167 (329)
+ ...-.|+.+++.+.....+. -.+-+++ +..|+| +-+.. .-.+.||..+.+|+++..=
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccce
Confidence 3 22336888776532212111 1222334 668888 43321 2479999999999999764
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.22 Score=43.52 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=87.6
Q ss_pred EEEEEcCccCCCCccCCceEEEeCCCCcEE-EEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCc
Q 020245 32 KVYAFGGEFTPRVPVDNNLHVFDLETLTWS-VADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQ 110 (329)
Q Consensus 32 ~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 110 (329)
.|++.+|.+. .-.++..|-+.+.-. .+-... .|-..+.....+....+++|.. .-++.||..+.+
T Consensus 226 plllvaG~d~-----~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak 291 (514)
T KOG2055|consen 226 PLLLVAGLDG-----TLRIFQVDGKVNPKLQSIHLEK---FPIQKAEFAPNGHSVIFTSGRR------KYLYSYDLETAK 291 (514)
T ss_pred ceEEEecCCC-----cEEEEEecCccChhheeeeecc---CccceeeecCCCceEEEecccc------eEEEEeeccccc
Confidence 7888898753 135667776666532 222111 2222222222333366766654 568999999999
Q ss_pred EEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCE-EEEE
Q 020245 111 WTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK-IWVV 189 (329)
Q Consensus 111 W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-l~v~ 189 (329)
.+++.++...+.+-....-+...+.+.++-|..+ .+......|+.|.---.+ .++....+...+++ |+++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~Ki----eG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKI----EGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeee----ccEEeeEEEecCCcEEEEE
Confidence 9999988654433333333445666777777543 466666677766432222 22222222234444 6666
Q ss_pred eeeCCCCcccEEEEeCCCCceEE
Q 020245 190 YGFAGVEVDDVHCFDPAHAQWAQ 212 (329)
Q Consensus 190 gG~~~~~~~~~~~~d~~~~~w~~ 212 (329)
||. .++|.+|+..+....
T Consensus 363 ~~~-----GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 363 GGT-----GEVYVWNLRQNSCLH 380 (514)
T ss_pred cCC-----ceEEEEecCCcceEE
Confidence 654 589999998875433
No 68
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.80 E-value=0.33 Score=42.99 Aligned_cols=242 Identities=13% Similarity=0.181 Sum_probs=120.5
Q ss_pred ceeEEeccCCCCCCC--CcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC-
Q 020245 6 GTWIKLDQKGSGPGA--RSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG- 82 (329)
Q Consensus 6 ~~W~~~~~~~~~p~~--r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~- 82 (329)
.+|++.......... ....++...+++.|++|-. .-+++=+-...+|++++....+|.. .......+
T Consensus 120 ~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~ 189 (398)
T PLN00033 120 KTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGP 189 (398)
T ss_pred CCceECccCcccccccccceeeeEEECCEEEEEcCc--------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECC
Confidence 389986421111111 2234455557788887632 2344444446789988764323333 23333443
Q ss_pred CEEEEEccccCCCCCCCceEEEECCCCcEEEcccCC-CCCCCc--------------ccceeEe-eCCeEEEEcccCCCc
Q 020245 83 HTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGD-AGPPHR--------------SYHSTAA-DDRHVYIFGGCGVSG 146 (329)
Q Consensus 83 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~p~~r--------------~~~~~~~-~~~~i~v~GG~~~~~ 146 (329)
+.++++|... .+++-+-...+|+.+.... ..+..+ ....+.. -++.++++|-.
T Consensus 190 ~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~---- 258 (398)
T PLN00033 190 KSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR---- 258 (398)
T ss_pred CceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC----
Confidence 4577877433 3666555567899873221 001111 1111121 24455555443
Q ss_pred CcceeEEEEcCCC-eEEEecCCCCCCCCCCCcEE-EEECCEEEEEeeeCCCCcccEEEEeCCCCc-----eEEeeccCCC
Q 020245 147 RLNDLWGFDVVDR-KWIQYPSAGENCKGRGGPGL-IVTQGKIWVVYGFAGVEVDDVHCFDPAHAQ-----WAQVETSGEK 219 (329)
Q Consensus 147 ~~~~~~~~~~~~~-~W~~~~~~~~~~~~~~~~~~-~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~-----w~~~~~~~~~ 219 (329)
..+++-...-. .|+.+.... .....++ ...++.++++|.. ..++.-+..... |.++..
T Consensus 259 --G~~~~s~d~G~~~W~~~~~~~----~~~l~~v~~~~dg~l~l~g~~-----G~l~~S~d~G~~~~~~~f~~~~~---- 323 (398)
T PLN00033 259 --GNFYLTWEPGQPYWQPHNRAS----ARRIQNMGWRADGGLWLLTRG-----GGLYVSKGTGLTEEDFDFEEADI---- 323 (398)
T ss_pred --ccEEEecCCCCcceEEecCCC----ccceeeeeEcCCCCEEEEeCC-----ceEEEecCCCCcccccceeeccc----
Confidence 22444333333 388887653 2222333 3456778887743 244444444443 444432
Q ss_pred CCCcc-eeEEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCC
Q 020245 220 PTARS-VFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGG 297 (329)
Q Consensus 220 p~~r~-~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 297 (329)
+..+. ...+... ++.++++|.. .-+++-....++|+++.. . -+.+-.. +.+...++
T Consensus 324 ~~~~~~l~~v~~~~d~~~~a~G~~---------------G~v~~s~D~G~tW~~~~~---~--~~~~~~l--y~v~f~~~ 381 (398)
T PLN00033 324 KSRGFGILDVGYRSKKEAWAAGGS---------------GILLRSTDGGKSWKRDKG---A--DNIAANL--YSVKFFDD 381 (398)
T ss_pred CCCCcceEEEEEcCCCcEEEEECC---------------CcEEEeCCCCcceeEccc---c--CCCCcce--eEEEEcCC
Confidence 12222 2233333 5688888863 346667777889999874 0 1122223 44444443
Q ss_pred cceEEEEcC
Q 020245 298 KHGLLVYGG 306 (329)
Q Consensus 298 ~~~i~i~GG 306 (329)
+..|+.|-
T Consensus 382 -~~g~~~G~ 389 (398)
T PLN00033 382 -KKGFVLGN 389 (398)
T ss_pred -CceEEEeC
Confidence 45888874
No 69
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.79 E-value=0.33 Score=42.86 Aligned_cols=190 Identities=18% Similarity=0.195 Sum_probs=102.7
Q ss_pred EEEECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEE
Q 020245 26 ITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYS 103 (329)
Q Consensus 26 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 103 (329)
.++.++.+|+... ...++.+|+.+.+ |+.... . ....+.+..++.+|+..+ ...++.
T Consensus 101 p~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~-----~-~~~~~p~v~~~~v~v~~~-------~g~l~a 159 (377)
T TIGR03300 101 VGADGGLVFVGTE--------KGEVIALDAEDGKELWRAKLS-----S-EVLSPPLVANGLVVVRTN-------DGRLTA 159 (377)
T ss_pred eEEcCCEEEEEcC--------CCEEEEEECCCCcEeeeeccC-----c-eeecCCEEECCEEEEECC-------CCeEEE
Confidence 3444667776432 1579999987654 654221 1 112333456778877543 246899
Q ss_pred EECCCC--cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCC--eEEEecCCCCCCC-----CC
Q 020245 104 FDTRTN--QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDR--KWIQYPSAGENCK-----GR 174 (329)
Q Consensus 104 ~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~--~W~~~~~~~~~~~-----~~ 174 (329)
+|+.+. .|+.-..... ...+...+.+..++.+| +|... ..+..+|+.++ .|+.-...+.... ..
T Consensus 160 ~d~~tG~~~W~~~~~~~~-~~~~~~~sp~~~~~~v~-~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~ 232 (377)
T TIGR03300 160 LDAATGERLWTYSRVTPA-LTLRGSASPVIADGGVL-VGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVD 232 (377)
T ss_pred EEcCCCceeeEEccCCCc-eeecCCCCCEEECCEEE-EECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhc
Confidence 998865 5775433210 01122233444566554 43322 36888998876 4764322210000 01
Q ss_pred CCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCC--ceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCC
Q 020245 175 GGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHA--QWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGA 252 (329)
Q Consensus 175 ~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~--~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~ 252 (329)
...+.+..++.+|+.... ..++.+|.++. .|+.-. + .....++.++.+|+...
T Consensus 233 ~~~~p~~~~~~vy~~~~~-----g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~------------ 287 (377)
T TIGR03300 233 VDGDPVVDGGQVYAVSYQ-----GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA------------ 287 (377)
T ss_pred cCCccEEECCEEEEEEcC-----CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC------------
Confidence 122334567778875422 47889998665 364421 1 11233456888888653
Q ss_pred CeeeceeEEEEcCCc--eeEe
Q 020245 253 GKFAGELYSLDTETL--VWTR 271 (329)
Q Consensus 253 ~~~~~~~~~~d~~~~--~W~~ 271 (329)
...++++|..+. .|+.
T Consensus 288 ---~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ---DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---CCeEEEEECCCCcEEEcc
Confidence 246889998755 5765
No 70
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.74 E-value=0.24 Score=40.43 Aligned_cols=213 Identities=20% Similarity=0.281 Sum_probs=118.3
Q ss_pred CceEEEeCCCCc--EEEEeeCCCCCCCCccee--EEEECCEEEEEccccCCCCCCCceEEEECCCCc--EEEcccCCCCC
Q 020245 48 NNLHVFDLETLT--WSVADVTGDVPPPRVGVT--MAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQ--WTLLSNGDAGP 121 (329)
Q Consensus 48 ~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p 121 (329)
..+..+|+.+.+ |+.-.. ....... .+..++.+|+..+ ...++.+|..+++ |+.-...
T Consensus 3 g~l~~~d~~tG~~~W~~~~~-----~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~~~---- 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG-----PGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDLPG---- 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS-----SSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEECSS----
T ss_pred CEEEEEECCCCCEEEEEECC-----CCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeeccc----
Confidence 467788887655 655221 1122222 3447889998743 4589999997764 6655422
Q ss_pred CCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCC--eEE-EecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcc
Q 020245 122 PHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDR--KWI-QYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVD 198 (329)
Q Consensus 122 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~--~W~-~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~ 198 (329)
+.....+..++.+|+.... ..++.+|..+. .|+ .....+.. ...........++.+|+... ..
T Consensus 67 --~~~~~~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~g 132 (238)
T PF13360_consen 67 --PISGAPVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPA-GVRSSSSPAVDGDRLYVGTS-----SG 132 (238)
T ss_dssp --CGGSGEEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTC-STB--SEEEEETTEEEEEET-----CS
T ss_pred --cccceeeecccccccccce------eeeEecccCCcceeeeecccccccc-ccccccCceEecCEEEEEec-----cC
Confidence 1112246678888887631 37899998877 588 45443211 12334444455676766542 15
Q ss_pred cEEEEeCCCCc--eEEeeccCCCCC-----CcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCce--e
Q 020245 199 DVHCFDPAHAQ--WAQVETSGEKPT-----ARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLV--W 269 (329)
Q Consensus 199 ~~~~~d~~~~~--w~~~~~~~~~p~-----~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~--W 269 (329)
.++.+|+++.+ |+.-........ .......+..++.+|+..+. ..+..+|.++.. |
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------------g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD---------------GRVVAVDLATGEKLW 197 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT---------------SSEEEEETTTTEEEE
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC---------------CeEEEEECCCCCEEE
Confidence 89999987664 555332110000 01123344446788887763 225666998886 7
Q ss_pred EeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCC
Q 020245 270 TRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDG 326 (329)
Q Consensus 270 ~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~ 326 (329)
+.. . ... .+.....+ +.+|+.. .+ ..++++|+++.+
T Consensus 198 ~~~-~----------~~~--~~~~~~~~-~~l~~~~-~~------~~l~~~d~~tG~ 233 (238)
T PF13360_consen 198 SKP-I----------SGI--YSLPSVDG-GTLYVTS-SD------GRLYALDLKTGK 233 (238)
T ss_dssp EEC-S----------S-E--CECEECCC-TEEEEEE-TT------TEEEEEETTTTE
T ss_pred Eec-C----------CCc--cCCceeeC-CEEEEEe-CC------CEEEEEECCCCC
Confidence 333 2 112 33234444 4466665 32 488999988763
No 71
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=96.65 E-value=0.24 Score=39.25 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=77.2
Q ss_pred EeeCCeEEEEcccCCCcCcceeEEEEcCCC--eEEEecCC-CCCCCCCCCcEEEEEC-CEEEEEeeeCCCCcccEEEEeC
Q 020245 130 AADDRHVYIFGGCGVSGRLNDLWGFDVVDR--KWIQYPSA-GENCKGRGGPGLIVTQ-GKIWVVYGFAGVEVDDVHCFDP 205 (329)
Q Consensus 130 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~--~W~~~~~~-~~~~~~~~~~~~~~~~-~~l~v~gG~~~~~~~~~~~~d~ 205 (329)
+...+++|+|-| ..+++++.... .-..+... +..| .....+....+ +++|++-| +..|+|+.
T Consensus 13 ~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg------~~yw~~~~ 78 (194)
T cd00094 13 TTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG------DKYWVYTG 78 (194)
T ss_pred EEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC------CEEEEEcC
Confidence 334589999988 56788776521 12222221 1111 22233333333 88999977 68999987
Q ss_pred CCCce---EEeeccCCCCC--CcceeEEEEE--CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCC
Q 020245 206 AHAQW---AQVETSGEKPT--ARSVFSTVGI--GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGS 278 (329)
Q Consensus 206 ~~~~w---~~~~~~~~~p~--~r~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~ 278 (329)
.+... +.+... ..|. .... ++... ++++|++-| +..|+||...++-..--.-++.
T Consensus 79 ~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg----------------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 79 KNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKG----------------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred cccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeC----------------CEEEEEeCCCccccCCCCcchh
Confidence 64222 111111 1111 1222 23333 579999988 4788999766543210000000
Q ss_pred CCCC-CCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccC
Q 020245 279 DHHP-GPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLD 325 (329)
Q Consensus 279 ~~~p-~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~ 325 (329)
...+ .+... -++....+ +.+|+|-|. ..|+||..+.
T Consensus 141 ~~w~g~p~~i--daa~~~~~-~~~yfF~g~--------~y~~~d~~~~ 177 (194)
T cd00094 141 TDFPGVPDKV--DAAFRWLD-GYYYFFKGD--------QYWRFDPRSK 177 (194)
T ss_pred hcCCCcCCCc--ceeEEeCC-CcEEEEECC--------EEEEEeCccc
Confidence 0011 12212 23333442 459999883 6788888765
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.089 Score=45.88 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=89.6
Q ss_pred CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceE
Q 020245 133 DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWA 211 (329)
Q Consensus 133 ~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~ 211 (329)
...+.+.+|.+.. -.++..|-+++. .+..+-..-.+. ..+...-+|+ ..+.+|.. ..+|.||+.+.+.+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi-~~a~f~p~G~~~i~~s~rr----ky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPI-QKAEFAPNGHSVIFTSGRR----KYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCcc-ceeeecCCCceEEEecccc----eEEEEeeccccccc
Confidence 5578888997753 445555666665 333321101121 2222333555 66666654 68999999999999
Q ss_pred EeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceec
Q 020245 212 QVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFA 291 (329)
Q Consensus 212 ~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~ 291 (329)
++..+...+.+-...--+..++.++++-|. ...|..+...++.|-.--. ++-.-.. ++
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~--------------~G~I~lLhakT~eli~s~K------ieG~v~~--~~ 351 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGN--------------NGHIHLLHAKTKELITSFK------IEGVVSD--FT 351 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEccc--------------CceEEeehhhhhhhhheee------eccEEee--EE
Confidence 998766555333333344555555555554 2468888888887744332 1221111 12
Q ss_pred ccccCCcceEEEEcCCCCCCCcccceEEEecccCCc
Q 020245 292 GGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGI 327 (329)
Q Consensus 292 ~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~ 327 (329)
.. -++ +.|++.||.. .||++|++++..
T Consensus 352 fs-Sds-k~l~~~~~~G-------eV~v~nl~~~~~ 378 (514)
T KOG2055|consen 352 FS-SDS-KELLASGGTG-------EVYVWNLRQNSC 378 (514)
T ss_pred Ee-cCC-cEEEEEcCCc-------eEEEEecCCcce
Confidence 22 233 5688888843 789999988753
No 73
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.09 E-value=0.6 Score=38.00 Aligned_cols=185 Identities=24% Similarity=0.353 Sum_probs=106.0
Q ss_pred EECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEE
Q 020245 28 IVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFD 105 (329)
Q Consensus 28 ~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d 105 (329)
..++.+|+..+ ...++++|+.+.+ |+.-.. .+.....+..++.+|+... ...++.+|
T Consensus 34 ~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~~------~~~~~~~~~~~~~v~v~~~-------~~~l~~~d 92 (238)
T PF13360_consen 34 PDGGRVYVASG--------DGNLYALDAKTGKVLWRFDLP------GPISGAPVVDGGRVYVGTS-------DGSLYALD 92 (238)
T ss_dssp EETTEEEEEET--------TSEEEEEETTTSEEEEEEECS------SCGGSGEEEETTEEEEEET-------TSEEEEEE
T ss_pred EeCCEEEEEcC--------CCEEEEEECCCCCEEEEeecc------ccccceeeecccccccccc-------eeeeEecc
Confidence 36888888743 2789999997766 443321 1222224778899988752 12899999
Q ss_pred CCCC--cEEE-cccCCCCCCC-cccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe--EEEecCCCCCCC-----CC
Q 020245 106 TRTN--QWTL-LSNGDAGPPH-RSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK--WIQYPSAGENCK-----GR 174 (329)
Q Consensus 106 ~~~~--~W~~-~~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~--W~~~~~~~~~~~-----~~ 174 (329)
..+. .|+. ....+ +.+ +........++.+|+... ...+..+|+++++ |+.-...+.... ..
T Consensus 93 ~~tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 164 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSD 164 (238)
T ss_dssp TTTSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETT
T ss_pred cCCcceeeeecccccc--ccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecc
Confidence 7765 5883 43322 222 233333344666766543 2578999999875 776554321000 00
Q ss_pred CCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCc--eEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCC
Q 020245 175 GGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQ--WAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGA 252 (329)
Q Consensus 175 ~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~--w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~ 252 (329)
.....+..++.+|+..+. ..+..+|..+.+ |+.. . .. ........++.||+.. .
T Consensus 165 ~~~~~~~~~~~v~~~~~~-----g~~~~~d~~tg~~~w~~~-~-----~~-~~~~~~~~~~~l~~~~-~----------- 220 (238)
T PF13360_consen 165 INGSPVISDGRVYVSSGD-----GRVVAVDLATGEKLWSKP-I-----SG-IYSLPSVDGGTLYVTS-S----------- 220 (238)
T ss_dssp EEEEEECCTTEEEEECCT-----SSEEEEETTTTEEEEEEC-S-----S--ECECEECCCTEEEEEE-T-----------
T ss_pred cccceEEECCEEEEEcCC-----CeEEEEECCCCCEEEEec-C-----CC-ccCCceeeCCEEEEEe-C-----------
Confidence 113333456778877643 235666988886 6332 1 11 1111345567777766 2
Q ss_pred CeeeceeEEEEcCCce
Q 020245 253 GKFAGELYSLDTETLV 268 (329)
Q Consensus 253 ~~~~~~~~~~d~~~~~ 268 (329)
...++++|+++.+
T Consensus 221 ---~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 221 ---DGRLYALDLKTGK 233 (238)
T ss_dssp ---TTEEEEEETTTTE
T ss_pred ---CCEEEEEECCCCC
Confidence 2579999998774
No 74
>smart00284 OLF Olfactomedin-like domains.
Probab=96.07 E-value=0.65 Score=38.17 Aligned_cols=193 Identities=8% Similarity=0.053 Sum_probs=101.3
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCC----CCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEE
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLE----TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFD 105 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~----~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d 105 (329)
++++|++-+... ..+.+..|.-. ..++.+.-. +|.+-.+...++.++.+|.- ...+..+.+||
T Consensus 34 ~~~~wv~~~~~~----~~~~v~ey~~~~~f~~~~~~~~~~---Lp~~~~GtG~VVYngslYY~------~~~s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTR----VLRSVREYSSMSDFQMGKNPTDHP---LPHAGQGTGVVVYNGSLYFN------KFNSHDICRFD 100 (255)
T ss_pred CceEEEEccccC----CCcEEEEecCHHHHhccCCceEEE---CCCccccccEEEECceEEEE------ecCCccEEEEE
Confidence 467888766421 11446565422 233222211 66777888899999999983 44568899999
Q ss_pred CCCCcEEEcccCC------CCCCC---cccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 106 TRTNQWTLLSNGD------AGPPH---RSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 106 ~~~~~W~~~~~~~------~~p~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
+.+++-.....++ ..|-. -...-.++.++-|+||=...++.-.-.+-+.|+.+-+-++.-... ...+..
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~--~~k~sa 178 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITT--YNKRSA 178 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcC--CCcccc
Confidence 9998764333321 01111 111223333555666633222221123456677664333222221 112223
Q ss_pred cEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE---CCEEEEEc
Q 020245 177 PGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI---GKHIVVYG 239 (329)
Q Consensus 177 ~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~---~~~i~i~G 239 (329)
..+.++=|.||++-........-.+.||..+.+-..+.. ..+.+...++++-+ +.+||+.-
T Consensus 179 ~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 179 SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI--PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee--eeccccccceeceeCCCCCeEEEEe
Confidence 334445577898854222233457889988766443322 44444455566655 45888864
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.96 E-value=0.74 Score=37.90 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCC--CCCCCCcceeEEEECCEEEEEccccCCCCCC--CceEEEE
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTG--DVPPPRVGVTMAAVGHTIYMFGGRDGTHKEL--NELYSFD 105 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~d 105 (329)
++++|+... ..+.++|+.+.+++.+.... ..+..+.+-.++.-++.||+.--........ ..+++++
T Consensus 51 ~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~ 121 (246)
T PF08450_consen 51 DGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRID 121 (246)
T ss_dssp TSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEE
T ss_pred CCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEEC
Confidence 678888764 34566799999998777642 1133444444555567888854222111122 5799999
Q ss_pred CCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCC--eEEEecCCCCCCCCCC-CcEEEE
Q 020245 106 TRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDR--KWIQYPSAGENCKGRG-GPGLIV 181 (329)
Q Consensus 106 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~--~W~~~~~~~~~~~~~~-~~~~~~ 181 (329)
+. .+.+.+... .......+..-++ .||+. +.....+++|++... ++.........+.... --.+++
T Consensus 122 ~~-~~~~~~~~~----~~~pNGi~~s~dg~~lyv~-----ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v 191 (246)
T PF08450_consen 122 PD-GKVTVVADG----LGFPNGIAFSPDGKTLYVA-----DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV 191 (246)
T ss_dssp TT-SEEEEEEEE----ESSEEEEEEETTSSEEEEE-----ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred CC-CeEEEEecC----cccccceEECCcchheeec-----ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence 99 665555433 2233333334444 56664 223366999988643 2332221111011111 122232
Q ss_pred -ECCEEEEEeeeCCCCcccEEEEeCCCCceEEee
Q 020245 182 -TQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVE 214 (329)
Q Consensus 182 -~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~ 214 (329)
.++.||+..-. ...+++||++...-..+.
T Consensus 192 D~~G~l~va~~~----~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 192 DSDGNLWVADWG----GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp BTTS-EEEEEET----TTEEEEEETTSCEEEEEE
T ss_pred cCCCCEEEEEcC----CCEEEEECCCccEEEEEc
Confidence 46889887321 169999999855455553
No 76
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.79 E-value=1.3 Score=39.36 Aligned_cols=243 Identities=12% Similarity=0.097 Sum_probs=119.3
Q ss_pred eeEEeccCCCCCCCCcceeEEE--E-CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCC--cceeEEEE
Q 020245 7 TWIKLDQKGSGPGARSSHAITI--V-GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR--VGVTMAAV 81 (329)
Q Consensus 7 ~W~~~~~~~~~p~~r~~~~~~~--~-~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r--~~~~~~~~ 81 (329)
+|+++... ....+....+.- . .++-+++|-. ..+.+=+--..+|+....+......+ ....+...
T Consensus 76 ~W~q~~~p--~~~~~~L~~V~F~~~d~~~GwAVG~~--------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~ 145 (398)
T PLN00033 76 EWEQVDLP--IDPGVVLLDIAFVPDDPTHGFLLGTR--------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFK 145 (398)
T ss_pred ccEEeecC--CCCCCceEEEEeccCCCCEEEEEcCC--------CEEEEEcCCCCCceECccCcccccccccceeeeEEE
Confidence 79998641 112234445544 2 3478887752 23444444567898754322111111 22344455
Q ss_pred CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCe
Q 020245 82 GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRK 160 (329)
Q Consensus 82 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 160 (329)
++.+|++|-.. .++.=+-...+|+.+......|... ...... ++.++++|.. ..+++-+..-.+
T Consensus 146 ~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~~--~~i~~~~~~~~~ivg~~------G~v~~S~D~G~t 210 (398)
T PLN00033 146 GKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGEP--VLIKATGPKSAEMVTDE------GAIYVTSNAGRN 210 (398)
T ss_pred CCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCCc--eEEEEECCCceEEEecc------ceEEEECCCCCC
Confidence 77888886322 3444344467899887643223222 222333 4467777643 346666666779
Q ss_pred EEEecCCC-CCCCC--------------CCCcEEE-EECCEEEEEeeeCCCCcccEEEE-eCCCCceEEeeccCCCCCCc
Q 020245 161 WIQYPSAG-ENCKG--------------RGGPGLI-VTQGKIWVVYGFAGVEVDDVHCF-DPAHAQWAQVETSGEKPTAR 223 (329)
Q Consensus 161 W~~~~~~~-~~~~~--------------~~~~~~~-~~~~~l~v~gG~~~~~~~~~~~~-d~~~~~w~~~~~~~~~p~~r 223 (329)
|+.+.... +.+.. .....+. ..++.++++|-. ..+++- |.....|+.+.. |.++
T Consensus 211 W~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-----G~~~~s~d~G~~~W~~~~~----~~~~ 281 (398)
T PLN00033 211 WKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-----GNFYLTWEPGQPYWQPHNR----ASAR 281 (398)
T ss_pred ceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC-----ccEEEecCCCCcceEEecC----CCcc
Confidence 99873221 00010 0111112 223445555422 244433 333334888863 2333
Q ss_pred ceeEEE-EECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCcee-----EeecCCCCCCCCCCCCCcceecccccCC
Q 020245 224 SVFSTV-GIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVW-----TRWDDGPGSDHHPGPRGWCAFAGGLRGG 297 (329)
Q Consensus 224 ~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W-----~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 297 (329)
...++. ..++.++++|.. ..+..-+.....| .+++. +..+.. -.++...++
T Consensus 282 ~l~~v~~~~dg~l~l~g~~---------------G~l~~S~d~G~~~~~~~f~~~~~-------~~~~~~-l~~v~~~~d 338 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRG---------------GGLYVSKGTGLTEEDFDFEEADI-------KSRGFG-ILDVGYRSK 338 (398)
T ss_pred ceeeeeEcCCCCEEEEeCC---------------ceEEEecCCCCcccccceeeccc-------CCCCcc-eEEEEEcCC
Confidence 333333 346788887752 3455555555544 44443 322222 034444444
Q ss_pred cceEEEEcCC
Q 020245 298 KHGLLVYGGN 307 (329)
Q Consensus 298 ~~~i~i~GG~ 307 (329)
+.+++.|..
T Consensus 339 -~~~~a~G~~ 347 (398)
T PLN00033 339 -KEAWAAGGS 347 (398)
T ss_pred -CcEEEEECC
Confidence 678888875
No 77
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.78 E-value=1.4 Score=39.55 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=132.0
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC-CEEEEEccccCCCC-----CCCceEE
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG-HTIYMFGGRDGTHK-----ELNELYS 103 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~-----~~~~~~~ 103 (329)
+++.++++=...++.. ..+.++|+.+++...-. ++..... .++-.+ ++.+++........ ....+++
T Consensus 134 dg~~la~~~s~~G~e~--~~l~v~Dl~tg~~l~d~----i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEW--YTLRVFDLETGKFLPDG----IENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp TSSEEEEEEEETTSSE--EEEEEEETTTTEEEEEE----EEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred CCCEEEEEecCCCCce--EEEEEEECCCCcCcCCc----ccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 5665555532222222 56889999988543221 1111111 133233 34444444442112 2667888
Q ss_pred EECCCCcEE--EcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCC-----eEEEecCCCCCCCCCCC
Q 020245 104 FDTRTNQWT--LLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDR-----KWIQYPSAGENCKGRGG 176 (329)
Q Consensus 104 ~d~~~~~W~--~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~-----~W~~~~~~~~~~~~~~~ 176 (329)
....+..-. .+-.....+. .........+++.+++.-..... ...++..+.... .|..+.+. .....
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~-~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~ 280 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPF-WFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDGVE 280 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTT-SEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES----SSS-E
T ss_pred EECCCChHhCeeEEeecCCCc-EEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC----CCceE
Confidence 887766433 2211111111 12222223355544443332222 478899999875 78888764 22223
Q ss_pred cEEEEECCEEEEEeeeCCCCcccEEEEeCCCCc---eEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCC
Q 020245 177 PGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQ---WAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAG 253 (329)
Q Consensus 177 ~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~---w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~ 253 (329)
..+...++.+|+... .+.....+..+++.... |..+-. +......--.+.+.++.|++.-=.+.
T Consensus 281 ~~v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~~~~~~---------- 347 (414)
T PF02897_consen 281 YYVDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLSYRENG---------- 347 (414)
T ss_dssp EEEEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEETT----------
T ss_pred EEEEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEEECCEEEEEEEECC----------
Confidence 334456888998765 22355788899887665 664332 11122344455567888887653211
Q ss_pred eeeceeEEEEcC-CceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCcc
Q 020245 254 KFAGELYSLDTE-TLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGIE 328 (329)
Q Consensus 254 ~~~~~~~~~d~~-~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~~ 328 (329)
...+.++|.. ...-..++. |..-.......-.-.+ ...|.+.++.. =..+|.||+++.+.+
T Consensus 348 --~~~l~v~~~~~~~~~~~~~~-------p~~g~v~~~~~~~~~~-~~~~~~ss~~~----P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 348 --SSRLRVYDLDDGKESREIPL-------PEAGSVSGVSGDFDSD-ELRFSYSSFTT----PPTVYRYDLATGELT 409 (414)
T ss_dssp --EEEEEEEETT-TEEEEEEES-------SSSSEEEEEES-TT-S-EEEEEEEETTE----EEEEEEEETTTTCEE
T ss_pred --ccEEEEEECCCCcEEeeecC-------CcceEEeccCCCCCCC-EEEEEEeCCCC----CCEEEEEECCCCCEE
Confidence 4689999999 555555553 3322211122222222 44555777654 348899999998753
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.69 E-value=1.1 Score=37.69 Aligned_cols=144 Identities=21% Similarity=0.213 Sum_probs=69.9
Q ss_pred EEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCCCceEEEECCCCc
Q 020245 32 KVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHKELNELYSFDTRTNQ 110 (329)
Q Consensus 32 ~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 110 (329)
.+|+.++.+ +.+.++|+.+++-...-... ..++ .....- +..+|+.++.. ..+..||..+.+
T Consensus 2 ~~~~s~~~d-------~~v~~~d~~t~~~~~~~~~~--~~~~--~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKD-------NTISVIDTATLEVTRTFPVG--QRPR--GITLSKDGKLLYVCASDS------DTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCC-------CEEEEEECCCCceEEEEECC--CCCC--ceEECCCCCEEEEEECCC------CeEEEEECCCCc
Confidence 466666532 57888998876643322211 1111 112222 33577766432 468889988876
Q ss_pred EEEcccCCCCCCCcccceeEeeC-CeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEE-ECCEEEE
Q 020245 111 WTLLSNGDAGPPHRSYHSTAADD-RHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIV-TQGKIWV 188 (329)
Q Consensus 111 W~~~~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~v 188 (329)
....-... ..++ .....-+ +.+|+.++.+ ..+..||+.+.+-...-.. ......++. .++++++
T Consensus 65 ~~~~~~~~--~~~~--~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 65 VIGTLPSG--PDPE--LFALHPNGKILYIANEDD-----NLVTVIDIETRKVLAEIPV-----GVEPEGMAVSPDGKIVV 130 (300)
T ss_pred EEEeccCC--CCcc--EEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEEeEeeC-----CCCcceEEECCCCCEEE
Confidence 54321111 1111 1222223 3566654422 4688899987643221111 111122333 3566666
Q ss_pred EeeeCCCCcccEEEEeCCCCc
Q 020245 189 VYGFAGVEVDDVHCFDPAHAQ 209 (329)
Q Consensus 189 ~gG~~~~~~~~~~~~d~~~~~ 209 (329)
++...+ ..++.||..+.+
T Consensus 131 ~~~~~~---~~~~~~d~~~~~ 148 (300)
T TIGR03866 131 NTSETT---NMAHFIDTKTYE 148 (300)
T ss_pred EEecCC---CeEEEEeCCCCe
Confidence 654321 245567776543
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.66 E-value=0.46 Score=39.12 Aligned_cols=106 Identities=23% Similarity=0.280 Sum_probs=72.2
Q ss_pred eCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceE
Q 020245 132 DDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWA 211 (329)
Q Consensus 132 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~ 211 (329)
.++.+|.--|..+. ..+.++|+.+++-.....+ |...++-.++..+++||.+--.+ .....||..+ .+
T Consensus 54 ~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l---~~~~FgEGit~~~d~l~qLTWk~----~~~f~yd~~t--l~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPL---PPRYFGEGITILGDKLYQLTWKE----GTGFVYDPNT--LK 121 (264)
T ss_dssp ETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESSS----SEEEEEETTT--TE
T ss_pred CCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEEC---CccccceeEEEECCEEEEEEecC----CeEEEEcccc--ce
Confidence 57899998887664 6788999999998877777 45667777889999999997543 6788999864 45
Q ss_pred EeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCc
Q 020245 212 QVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETL 267 (329)
Q Consensus 212 ~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~ 267 (329)
.+.. .+.+..+-+++..+..+++-.|. +.++.+|+++.
T Consensus 122 ~~~~---~~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f 159 (264)
T PF05096_consen 122 KIGT---FPYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETF 159 (264)
T ss_dssp EEEE---EE-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-
T ss_pred EEEE---EecCCcceEEEcCCCEEEEECCc---------------cceEEECCccc
Confidence 5542 23445666777677788888883 56777777643
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.31 E-value=1.5 Score=36.84 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=68.9
Q ss_pred EEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEE--ECCEEEEEccccCCCCCCCceEEEECCCC
Q 020245 32 KVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA--VGHTIYMFGGRDGTHKELNELYSFDTRTN 109 (329)
Q Consensus 32 ~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 109 (329)
.+|+.++. .+.+..||..+.+........ ..+ ..++. .++.+|+.++.. ..+..||+.+.
T Consensus 44 ~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~ 105 (300)
T TIGR03866 44 LLYVCASD-------SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD------NLVTVIDIETR 105 (300)
T ss_pred EEEEEECC-------CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCC
Confidence 56676653 256889998877654321111 111 12222 234577665322 46888998875
Q ss_pred cE-EEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEE
Q 020245 110 QW-TLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWV 188 (329)
Q Consensus 110 ~W-~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v 188 (329)
+- ..++.. . ........-++++++++.... ..+..||..+.+-....... .+..+.....+++.++
T Consensus 106 ~~~~~~~~~---~--~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 106 KVLAEIPVG---V--EPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD----QRPRFAEFTADGKELW 172 (300)
T ss_pred eEEeEeeCC---C--CcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC----CCccEEEECCCCCEEE
Confidence 42 122111 0 111222233566666655332 24556787765433221111 1112222233455444
Q ss_pred EeeeCCCCcccEEEEeCCCCce
Q 020245 189 VYGFAGVEVDDVHCFDPAHAQW 210 (329)
Q Consensus 189 ~gG~~~~~~~~~~~~d~~~~~w 210 (329)
+++..+ ..+..||.++.+.
T Consensus 173 ~~~~~~---~~v~i~d~~~~~~ 191 (300)
T TIGR03866 173 VSSEIG---GTVSVIDVATRKV 191 (300)
T ss_pred EEcCCC---CEEEEEEcCccee
Confidence 443211 4688888876543
No 81
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.30 E-value=2 Score=38.22 Aligned_cols=185 Identities=17% Similarity=0.192 Sum_probs=100.1
Q ss_pred CCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCc---ceeEEEEcCCCeEEEecCCCCC
Q 020245 94 THKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRL---NDLWGFDVVDRKWIQYPSAGEN 170 (329)
Q Consensus 94 ~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~---~~~~~~~~~~~~W~~~~~~~~~ 170 (329)
.+....+++.++.+.++-+++.-.+. +.+..+-..-++.|.|.-.. .++. ..++..+.......
T Consensus 102 ss~~taDly~v~~e~Ge~kRiTyfGr---~fT~VaG~~~dg~iiV~TD~--~tPF~q~~~lYkv~~dg~~~e-------- 168 (668)
T COG4946 102 SSLQTADLYVVPSEDGEAKRITYFGR---RFTRVAGWIPDGEIIVSTDF--HTPFSQWTELYKVNVDGIKTE-------- 168 (668)
T ss_pred CCCccccEEEEeCCCCcEEEEEEecc---ccceeeccCCCCCEEEEecc--CCCcccceeeeEEccCCceee--------
Confidence 34456789999988888777776641 11112222246677776332 2222 22233222222222
Q ss_pred CCCCCCcEEEEECCEEEEEeeeC----------CCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcC
Q 020245 171 CKGRGGPGLIVTQGKIWVVYGFA----------GVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGG 240 (329)
Q Consensus 171 ~~~~~~~~~~~~~~~l~v~gG~~----------~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG 240 (329)
|....-.+..+..+-+.++|-.. +..-..+|.=.....+++++.. ++... .+-+.+++++|.+-.
T Consensus 169 ~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vd---l~~~v--S~PmIV~~RvYFlsD 243 (668)
T COG4946 169 PLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVD---LDGNV--SSPMIVGERVYFLSD 243 (668)
T ss_pred eccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeee---cCCCc--CCceEEcceEEEEec
Confidence 22333344445555577777422 2234566766555557777763 32221 234467889999875
Q ss_pred ccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCC--CCCCcceecccccCCcceEEEEcCCCCCCCcccceE
Q 020245 241 EVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHP--GPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIY 318 (329)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p--~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~ 318 (329)
... ...++.-|+..+.-++..+ +. .+|. +-.++|.-++--|| |||
T Consensus 244 ~eG------------~GnlYSvdldGkDlrrHTn------FtdYY~R~------~nsDGkrIvFq~~G---------dIy 290 (668)
T COG4946 244 HEG------------VGNLYSVDLDGKDLRRHTN------FTDYYPRN------ANSDGKRIVFQNAG---------DIY 290 (668)
T ss_pred ccC------------ccceEEeccCCchhhhcCC------chhccccc------cCCCCcEEEEecCC---------cEE
Confidence 422 2457777777776655554 22 2332 33455433444566 899
Q ss_pred EEecccCCccC
Q 020245 319 FFTPCLDGIED 329 (329)
Q Consensus 319 ~~~~~~~~~~~ 329 (329)
.|||.+++.++
T Consensus 291 lydP~td~lek 301 (668)
T COG4946 291 LYDPETDSLEK 301 (668)
T ss_pred EeCCCcCccee
Confidence 99999988764
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.17 E-value=2.1 Score=37.88 Aligned_cols=214 Identities=13% Similarity=0.107 Sum_probs=111.0
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcE-EEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTW-SVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 108 (329)
|++|+..|+.. ..|-+||..+... +.+.... .|..---....++.+++.|+.+ .-+-.+|..+
T Consensus 79 DG~LlaaGD~s-------G~V~vfD~k~r~iLR~~~ah~---apv~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~ 142 (487)
T KOG0310|consen 79 DGRLLAAGDES-------GHVKVFDMKSRVILRQLYAHQ---APVHVTKFSPQDNTMLVSGSDD------KVVKYWDLST 142 (487)
T ss_pred CCeEEEccCCc-------CcEEEeccccHHHHHHHhhcc---CceeEEEecccCCeEEEecCCC------ceEEEEEcCC
Confidence 57788777643 5688888554221 1222211 1111122345688899998765 2344456665
Q ss_pred CcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEE-EECCEEE
Q 020245 109 NQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLI-VTQGKIW 187 (329)
Q Consensus 109 ~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~ 187 (329)
..- +....+..-.-|. ..+...++.|++-||++. .+-.||..+.+ ..+-... .+..--.++ +-.+.++
T Consensus 143 a~v-~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~-~~v~eln---hg~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRC-GDISPANDHIVVTGSYDG-----KVRLWDTRSLT-SRVVELN---HGCPVESVLALPSGSLI 211 (487)
T ss_pred cEE-EEEecCCcceeEe-eccccCCCeEEEecCCCc-----eEEEEEeccCC-ceeEEec---CCCceeeEEEcCCCCEE
Confidence 542 3332221111132 223345788999999975 57778888774 2233331 222222233 3343554
Q ss_pred E-EeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcc-ee----EEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeE
Q 020245 188 V-VYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARS-VF----STVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELY 260 (329)
Q Consensus 188 v-~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~-~~----~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 260 (329)
+ .|| +.+-++|..++. .++..+. ++ ++.+. ++.-++-||.+ ..|-
T Consensus 212 asAgG------n~vkVWDl~~G~--------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--------------~~VK 263 (487)
T KOG0310|consen 212 ASAGG------NSVKVWDLTTGG--------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD--------------RHVK 263 (487)
T ss_pred EEcCC------CeEEEEEecCCc--------eehhhhhcccceEEEEEeecCCceEeecccc--------------cceE
Confidence 4 444 567777764321 1112222 11 22222 34666667653 3688
Q ss_pred EEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCC
Q 020245 261 SLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSP 309 (329)
Q Consensus 261 ~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~ 309 (329)
+|| ...|+.+.. +..+-.- .++++.++ ++-+++|.-++
T Consensus 264 Vfd--~t~~Kvv~s------~~~~~pv--Lsiavs~d-d~t~viGmsnG 301 (487)
T KOG0310|consen 264 VFD--TTNYKVVHS------WKYPGPV--LSIAVSPD-DQTVVIGMSNG 301 (487)
T ss_pred EEE--ccceEEEEe------eecccce--eeEEecCC-CceEEEecccc
Confidence 899 446766665 3334444 56666665 56777787654
No 83
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.11 E-value=1.5 Score=35.87 Aligned_cols=144 Identities=18% Similarity=0.138 Sum_probs=66.1
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCCCceEEEECCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~ 108 (329)
++.++++|+.+ +.+..||..+.+-..... . ..... ..+... +++.++.++.+ ..+..||..+
T Consensus 20 ~~~~l~~~~~~-------g~i~i~~~~~~~~~~~~~-~--~~~~i-~~~~~~~~~~~l~~~~~~------~~i~i~~~~~ 82 (289)
T cd00200 20 DGKLLATGSGD-------GTIKVWDLETGELLRTLK-G--HTGPV-RDVAASADGTYLASGSSD------KTIRLWDLET 82 (289)
T ss_pred CCCEEEEeecC-------cEEEEEEeeCCCcEEEEe-c--CCcce-eEEEECCCCCEEEEEcCC------CeEEEEEcCc
Confidence 34666666642 568888877654211111 0 01111 122222 33455555533 4788888876
Q ss_pred CcEE-EcccCCCCCCCcccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEEC-CE
Q 020245 109 NQWT-LLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQ-GK 185 (329)
Q Consensus 109 ~~W~-~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~ 185 (329)
.+.. .+... ...-.++... ++++++.++.+ ..+..||+.+.+-...-.. ....-.++.... +.
T Consensus 83 ~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~ 148 (289)
T cd00200 83 GECVRTLTGH-----TSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGT 148 (289)
T ss_pred ccceEEEecc-----CCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCC
Confidence 4221 11111 1111222222 34666666522 4688898886543322221 111222333333 44
Q ss_pred EEEEeeeCCCCcccEEEEeCCCC
Q 020245 186 IWVVYGFAGVEVDDVHCFDPAHA 208 (329)
Q Consensus 186 l~v~gG~~~~~~~~~~~~d~~~~ 208 (329)
+++.+..+ ..+..||..+.
T Consensus 149 ~l~~~~~~----~~i~i~d~~~~ 167 (289)
T cd00200 149 FVASSSQD----GTIKLWDLRTG 167 (289)
T ss_pred EEEEEcCC----CcEEEEEcccc
Confidence 44444323 47888888643
No 84
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.70 E-value=3.2 Score=37.55 Aligned_cols=192 Identities=9% Similarity=-0.019 Sum_probs=94.4
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..++..|.....-+.+.... ..-........+.+|+... .. .....++.+|+.+++.+.+.... ......
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~---~~v~~p~wSpDG~~lay~s-~~---~g~~~i~~~dl~~g~~~~l~~~~---g~~~~~ 251 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGS---SLVLTPRFSPNRQEITYMS-YA---NGRPRVYLLDLETGQRELVGNFP---GMTFAP 251 (435)
T ss_pred eEEEEECCCCCCcEEEecCC---CCeEeeEECCCCCEEEEEE-ec---CCCCEEEEEECCCCcEEEeecCC---CcccCc
Confidence 57888887654434433211 1111111112233444432 11 12368999999988877776442 212222
Q ss_pred eeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC
Q 020245 128 STAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 128 ~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~ 206 (329)
...-++ +|++....+. ...++.+|+.+.....+.... .........-+++-+++... .....+++.+|..
T Consensus 252 -~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~----~~~~~~~~spDG~~i~f~s~-~~g~~~Iy~~d~~ 322 (435)
T PRK05137 252 -RFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSP----AIDTSPSYSPDGSQIVFESD-RSGSPQLYVMNAD 322 (435)
T ss_pred -EECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCC----CccCceeEcCCCCEEEEEEC-CCCCCeEEEEECC
Confidence 222244 5544433222 257899999998877776542 11111222334443333321 1122578999988
Q ss_pred CCceEEeeccCCCCCCcceeEEEEECC-EEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 207 HAQWAQVETSGEKPTARSVFSTVGIGK-HIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 207 ~~~w~~~~~~~~~p~~r~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
....+.+... ..........-++ .|++.... .. ...++.+|++....+.+..
T Consensus 323 g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~-~~-----------~~~i~~~d~~~~~~~~lt~ 375 (435)
T PRK05137 323 GSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQG-GG-----------QFSIGVMKPDGSGERILTS 375 (435)
T ss_pred CCCeEEeecC----CCcccCeEECCCCCEEEEEEcC-CC-----------ceEEEEEECCCCceEeccC
Confidence 7777776531 1111111122244 55444321 10 2468889987776655543
No 85
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.63 E-value=2.2 Score=35.31 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=95.3
Q ss_pred ECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCC
Q 020245 29 VGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 29 ~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 108 (329)
.++.||..-|..+. +.+.++|+.+++-..... +|..-.+-.++.++++||.+-=. ....+.||..+
T Consensus 54 ~~g~LyESTG~yG~-----S~l~~~d~~tg~~~~~~~---l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ-----SSLRKVDLETGKVLQSVP---LPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTTE-----EEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------SSEEEEEETTT
T ss_pred CCCEEEEeCCCCCc-----EEEEEEECCCCcEEEEEE---CCccccceeEEEECCEEEEEEec------CCeEEEEcccc
Confidence 36788888886652 678899999988655444 55666777899999999998433 36789999986
Q ss_pred CcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEe-cCCCCCCCCCCCcEEEEECCEEE
Q 020245 109 NQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQY-PSAGENCKGRGGPGLIVTQGKIW 187 (329)
Q Consensus 109 ~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~ 187 (329)
- +.+... +.+..+-.++..+..+++--|. +.++..||.+-+-... ........-..---+-.+++.||
T Consensus 120 l--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~Iy 188 (264)
T PF05096_consen 120 L--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIY 188 (264)
T ss_dssp T--EEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEE
T ss_pred c--eEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEE
Confidence 4 444444 3445777888888899988774 5688889886532221 11100000111222335577777
Q ss_pred EEeeeCCCCcccEEEEeCCCCceEEee
Q 020245 188 VVYGFAGVEVDDVHCFDPAHAQWAQVE 214 (329)
Q Consensus 188 v~gG~~~~~~~~~~~~d~~~~~w~~~~ 214 (329)
.--- ..+.|.+.|++++.-...-
T Consensus 189 ANVW----~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 189 ANVW----QTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEET----TSSEEEEEETTT-BEEEEE
T ss_pred EEeC----CCCeEEEEeCCCCeEEEEE
Confidence 5322 3489999999998766543
No 86
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.62 E-value=3.4 Score=37.53 Aligned_cols=149 Identities=9% Similarity=0.039 Sum_probs=80.7
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCc
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGP 177 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 177 (329)
...++.+|+.+.+-+.+.... ...........+.+|++....+. ...++.+|+.+++.+.+.... .....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~----~~~~~ 310 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHR----AIDTE 310 (448)
T ss_pred CcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCC----CCccc
Confidence 357999999887766665441 11111121122345655533222 257999999999888776542 11111
Q ss_pred EEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECC-EEEEEcCccCCCCCCcCCCCee
Q 020245 178 GLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGK-HIVVYGGEVDPSDLGHLGAGKF 255 (329)
Q Consensus 178 ~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~~ 255 (329)
....-+++ |++..... ....+|.+|.++.+++.+...+. ........-++ .|++..- ...
T Consensus 311 p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~-~~g----------- 372 (448)
T PRK04792 311 PSWHPDGKSLIFTSERG--GKPQIYRVNLASGKVSRLTFEGE----QNLGGSITPDGRSMIMVNR-TNG----------- 372 (448)
T ss_pred eEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEEecCCC----CCcCeeECCCCCEEEEEEe-cCC-----------
Confidence 12223444 44443222 22589999998888887753211 11111222344 5555432 111
Q ss_pred eceeEEEEcCCceeEeecC
Q 020245 256 AGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 256 ~~~~~~~d~~~~~W~~~~~ 274 (329)
...++.+|+.+...+.+..
T Consensus 373 ~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred ceEEEEEECCCCCeEEccC
Confidence 2478999999888777654
No 87
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.56 E-value=2.3 Score=35.21 Aligned_cols=189 Identities=17% Similarity=0.153 Sum_probs=104.8
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE--CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV--GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRS 125 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~ 125 (329)
+.+.++|+++.+-++.+.+.+.+.. +.-..++ .+.|++.|-.. -.-++|+.++..+..+... .+--
T Consensus 124 ~aI~R~dpkt~evt~f~lp~~~a~~--nlet~vfD~~G~lWFt~q~G-------~yGrLdPa~~~i~vfpaPq---G~gp 191 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLPLEHADA--NLETAVFDPWGNLWFTGQIG-------AYGRLDPARNVISVFPAPQ---GGGP 191 (353)
T ss_pred ceeEEecCcccceEEeecccccCCC--cccceeeCCCccEEEeeccc-------cceecCcccCceeeeccCC---CCCC
Confidence 3688999998888887765433222 2223334 35677776322 1116777777666555431 1122
Q ss_pred cceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeC
Q 020245 126 YHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDP 205 (329)
Q Consensus 126 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~ 205 (329)
...++.-++.+|+..= .-+.+-+.|+.+..=+.+...... ..-....-+-..+.+++.-- ....+++||+
T Consensus 192 yGi~atpdGsvwyasl-----agnaiaridp~~~~aev~p~P~~~-~~gsRriwsdpig~~wittw----g~g~l~rfdP 261 (353)
T COG4257 192 YGICATPDGSVWYASL-----AGNAIARIDPFAGHAEVVPQPNAL-KAGSRRIWSDPIGRAWITTW----GTGSLHRFDP 261 (353)
T ss_pred cceEECCCCcEEEEec-----cccceEEcccccCCcceecCCCcc-cccccccccCccCcEEEecc----CCceeeEeCc
Confidence 3334445778887621 115567778877754444433210 11111111223456666521 2368999999
Q ss_pred CCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 206 AHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 206 ~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
....|++..-.+. .+|-+..-+--.+.+++--- -.+.+.+||+++.+++.++.
T Consensus 262 s~~sW~eypLPgs--~arpys~rVD~~grVW~sea--------------~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 262 SVTSWIEYPLPGS--KARPYSMRVDRHGRVWLSEA--------------DAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccccceeeeCCCC--CCCcceeeeccCCcEEeecc--------------ccCceeecCcccceEEEecC
Confidence 9999998864332 23333222222345655321 14679999999999988874
No 88
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.36 E-value=2.5 Score=34.94 Aligned_cols=225 Identities=11% Similarity=0.030 Sum_probs=118.9
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSY 126 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~ 126 (329)
..+=.+||.+.+-.+.+. +..-.-|..++- ++..+|.- .. .-+-++|+++...++.+.....+.....
T Consensus 83 gaiGhLdP~tGev~~ypL----g~Ga~Phgiv~gpdg~~Witd------~~-~aI~R~dpkt~evt~f~lp~~~a~~nle 151 (353)
T COG4257 83 GAIGHLDPATGEVETYPL----GSGASPHGIVVGPDGSAWITD------TG-LAIGRLDPKTLEVTRFPLPLEHADANLE 151 (353)
T ss_pred ccceecCCCCCceEEEec----CCCCCCceEEECCCCCeeEec------Cc-ceeEEecCcccceEEeecccccCCCccc
Confidence 445568888888776664 233333444432 34555542 11 2688999988887777655322223333
Q ss_pred ceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC
Q 020245 127 HSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 127 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~ 206 (329)
..+.--.+.++..|-.... -++|+.++.-+..... .....+-.++.-++.+|+..-. -+.+-+.|+.
T Consensus 152 t~vfD~~G~lWFt~q~G~y------GrLdPa~~~i~vfpaP---qG~gpyGi~atpdGsvwyasla----gnaiaridp~ 218 (353)
T COG4257 152 TAVFDPWGNLWFTGQIGAY------GRLDPARNVISVFPAP---QGGGPYGICATPDGSVWYASLA----GNAIARIDPF 218 (353)
T ss_pred ceeeCCCccEEEeeccccc------eecCcccCceeeeccC---CCCCCcceEECCCCcEEEEecc----ccceEEcccc
Confidence 3333345677777653222 2566666654444332 1222233344568888876321 1677788887
Q ss_pred CCceEEeeccCCCCC-CcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCC
Q 020245 207 HAQWAQVETSGEKPT-ARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPR 285 (329)
Q Consensus 207 ~~~w~~~~~~~~~p~-~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r 285 (329)
+..=+.+.....+-. .|. ..+---+.+.+--- -...+++||+....|.+.+- |...
T Consensus 219 ~~~aev~p~P~~~~~gsRr--iwsdpig~~wittw--------------g~g~l~rfdPs~~sW~eypL-------Pgs~ 275 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRR--IWSDPIGRAWITTW--------------GTGSLHRFDPSVTSWIEYPL-------PGSK 275 (353)
T ss_pred cCCcceecCCCcccccccc--cccCccCcEEEecc--------------CCceeeEeCcccccceeeeC-------CCCC
Confidence 776555543221111 111 01111235555411 13579999999999999884 4422
Q ss_pred CcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCc
Q 020245 286 GWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGI 327 (329)
Q Consensus 286 ~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~ 327 (329)
.. .-...+++++.+++-- -..+-|.+||+.+.++
T Consensus 276 ar--pys~rVD~~grVW~se------a~agai~rfdpeta~f 309 (353)
T COG4257 276 AR--PYSMRVDRHGRVWLSE------ADAGAIGRFDPETARF 309 (353)
T ss_pred CC--cceeeeccCCcEEeec------cccCceeecCcccceE
Confidence 22 2233344435566521 1234667777776554
No 89
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=93.93 E-value=3 Score=34.13 Aligned_cols=216 Identities=9% Similarity=0.079 Sum_probs=96.6
Q ss_pred CcceeEEEECCEEEEEcCc-cCCCCccCCceEEEe---CCCCcEEEEeeCCCCCC-------CCcceeEEEECCEEEEEc
Q 020245 21 RSSHAITIVGQKVYAFGGE-FTPRVPVDNNLHVFD---LETLTWSVADVTGDVPP-------PRVGVTMAAVGHTIYMFG 89 (329)
Q Consensus 21 r~~~~~~~~~~~l~~~GG~-~~~~~~~~~~~~~~d---~~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~iyv~G 89 (329)
-.+.++-+++|+||.+=-. .-.+.. ....+.|| ...+.|+...... .|. ...-|+.+.+++.-|.+|
T Consensus 75 yHCmSMGv~~NRLfa~iEtR~~a~~k-m~~~~Lw~RpMF~~spW~~teL~~-~~~~~~a~~~vTe~HSFa~i~~~~fA~G 152 (367)
T PF12217_consen 75 YHCMSMGVVGNRLFAVIETRTVASNK-MVRAELWSRPMFHDSPWRITELGT-IASFTSAGVAVTELHSFATIDDNQFAVG 152 (367)
T ss_dssp EE-B-EEEETTEEEEEEEEEETTT---EEEEEEEEEE-STTS--EEEEEES--TT--------SEEEEEEE-SSS-EEEE
T ss_pred eeeeeeeeecceeeEEEeehhhhhhh-hhhhhhhcccccccCCceeeeccc-ccccccccceeeeeeeeeEecCCceeEE
Confidence 3455677889999986421 111111 13334454 3467787655433 334 456788899998888887
Q ss_pred cccCCCCCCCceEEEECCC-------CcEEEcccCCCCCCCcccceeEeeCCeEEEEc-ccCCCcCcceeEEEEcCCCeE
Q 020245 90 GRDGTHKELNELYSFDTRT-------NQWTLLSNGDAGPPHRSYHSTAADDRHVYIFG-GCGVSGRLNDLWGFDVVDRKW 161 (329)
Q Consensus 90 G~~~~~~~~~~~~~~d~~~-------~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~G-G~~~~~~~~~~~~~~~~~~~W 161 (329)
=.+ .+...+++-.+-... -.=+.++.. ....-+..++-.+++.||+.- |......-.++.+-+...+.|
T Consensus 153 yHn-GD~sPRe~G~~yfs~~~~sp~~~vrr~i~se--y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w 229 (367)
T PF12217_consen 153 YHN-GDVSPRELGFLYFSDAFASPGVFVRRIIPSE--YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNW 229 (367)
T ss_dssp EEE--SSSS-EEEEEEETTTTT-TT--EEEE--GG--G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-
T ss_pred ecc-CCCCcceeeEEEecccccCCcceeeeechhh--hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCch
Confidence 555 333344443332211 111222222 011223344455799999883 443334445677778888899
Q ss_pred EEecCCCCCCCCCCCcEEEEECCEEEEEeeeCC----------C----Cc--ccEEEE-----eCCCCceEEeeccC---
Q 020245 162 IQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAG----------V----EV--DDVHCF-----DPAHAQWAQVETSG--- 217 (329)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~----------~----~~--~~~~~~-----d~~~~~w~~~~~~~--- 217 (329)
+.+.-... .-....-.+..++.||++|.... . .. .-+.+. .++.-+|..+..+.
T Consensus 230 ~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG 307 (367)
T PF12217_consen 230 SSLRFPNN--VHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQG 307 (367)
T ss_dssp EEEE-TT-----SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--
T ss_pred hhcccccc--ccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecc
Confidence 98875421 12222334578999999986321 1 00 111222 34556677766522
Q ss_pred CCCCCcceeEEE-EECCE-EEEEcCccC
Q 020245 218 EKPTARSVFSTV-GIGKH-IVVYGGEVD 243 (329)
Q Consensus 218 ~~p~~r~~~~~~-~~~~~-i~i~GG~~~ 243 (329)
.......+.+.+ +-++. -|++||.+.
T Consensus 308 ~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 308 GIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred ccccccccceeEEEECCEEEEEecCccc
Confidence 222333344444 44664 467788764
No 90
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.83 E-value=5.4 Score=36.75 Aligned_cols=125 Identities=20% Similarity=0.248 Sum_probs=66.0
Q ss_pred eEEEECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCC-CCCCCC-cceeEEEEC-CEEEEEccccCCCCCCC
Q 020245 25 AITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTG-DVPPPR-VGVTMAAVG-HTIYMFGGRDGTHKELN 99 (329)
Q Consensus 25 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~-~~p~~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~ 99 (329)
+-++.+++||+.... ..++.+|..+.+ |+.-.... ....+. .....+..+ ++||+... ..
T Consensus 56 sPvv~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g 120 (488)
T cd00216 56 TPLVVDGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DG 120 (488)
T ss_pred CCEEECCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CC
Confidence 445668899986542 568999988654 76533211 000011 111233445 78887432 34
Q ss_pred ceEEEECCCC--cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCC----cCcceeEEEEcCCC--eEEEec
Q 020245 100 ELYSFDTRTN--QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVS----GRLNDLWGFDVVDR--KWIQYP 165 (329)
Q Consensus 100 ~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~----~~~~~~~~~~~~~~--~W~~~~ 165 (329)
.++.+|..+. .|+.-......+......+.++.++.+|+ |..... .....++.+|..+. .|+.-.
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 7899998865 57754332100000112233445666554 432221 12357899999876 487644
No 91
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.78 E-value=4.7 Score=35.96 Aligned_cols=102 Identities=12% Similarity=0.004 Sum_probs=60.1
Q ss_pred ceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCccee--
Q 020245 149 NDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVF-- 226 (329)
Q Consensus 149 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~-- 226 (329)
+.+.+||..+.+-+.+... .++.....+.-+++..+++... -++|.+|+++++-+.+..+ |.+.
T Consensus 382 D~l~iyd~~~~e~kr~e~~----lg~I~av~vs~dGK~~vvaNdr----~el~vididngnv~~idkS------~~~lIt 447 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKD----LGNIEAVKVSPDGKKVVVANDR----FELWVIDIDNGNVRLIDKS------EYGLIT 447 (668)
T ss_pred ceEEEEecCCceEEEeeCC----ccceEEEEEcCCCcEEEEEcCc----eEEEEEEecCCCeeEeccc------ccceeE
Confidence 4678888888887766653 4444444455566766665432 5899999999988877632 1111
Q ss_pred EEEEECC-EEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 227 STVGIGK-HIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 227 ~~~~~~~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
..+...+ +.+.++ .. .+-.+..+..||+.+.+-..+..
T Consensus 448 df~~~~nsr~iAYa-fP---------~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 448 DFDWHPNSRWIAYA-FP---------EGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEEcCCceeEEEe-cC---------cceeeeeEEEEecCCCeEEEecC
Confidence 1112222 333322 11 12456678888888876666665
No 92
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.60 E-value=1.4 Score=32.20 Aligned_cols=85 Identities=12% Similarity=0.225 Sum_probs=58.2
Q ss_pred EECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCc-CcceeEEE-EcC
Q 020245 80 AVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSG-RLNDLWGF-DVV 157 (329)
Q Consensus 80 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~~-~~~ 157 (329)
.+++-+|-..-. .......+.+||..+.+|+.+..+...........++.++|+|-++.-..... ..-++|.. |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 467777766544 23456789999999999998877522245567777888899998886544332 23456666 455
Q ss_pred CCeEEEecC
Q 020245 158 DRKWIQYPS 166 (329)
Q Consensus 158 ~~~W~~~~~ 166 (329)
+++|++...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 778998865
No 93
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.51 E-value=4.5 Score=34.84 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=80.5
Q ss_pred CEEEEEccccC-C--CCCC-CceEEEECCCC-----cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEE
Q 020245 83 HTIYMFGGRDG-T--HKEL-NELYSFDTRTN-----QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWG 153 (329)
Q Consensus 83 ~~iyv~GG~~~-~--~~~~-~~~~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 153 (329)
..++++|..-. . .... ..+..|+..+. +.+.+... ...-.-.+++.+++++.+.-| +.+..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g-------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG-------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET-------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec-------CEEEE
Confidence 46777775432 1 1123 67889998874 56655444 122334556667899777777 67888
Q ss_pred EEcCCCe-EEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE-
Q 020245 154 FDVVDRK-WIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI- 231 (329)
Q Consensus 154 ~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~- 231 (329)
|++...+ +....... .+....++...++.|+ +|... ..-.++.|+.+..+-..+.... .++...++..+
T Consensus 112 ~~l~~~~~l~~~~~~~---~~~~i~sl~~~~~~I~-vgD~~--~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~ 182 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFYD---SPFYITSLSVFKNYIL-VGDAM--KSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLV 182 (321)
T ss_dssp EEEETTSSEEEEEEE----BSSSEEEEEEETTEEE-EEESS--SSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-
T ss_pred EEccCcccchhhheec---ceEEEEEEeccccEEE-EEEcc--cCEEEEEEEccCCEEEEEEecC---CCccEEEEEEec
Confidence 8888888 88887763 3334455556677555 44322 1235567787666677777432 45655555555
Q ss_pred CCEEEEEc
Q 020245 232 GKHIVVYG 239 (329)
Q Consensus 232 ~~~i~i~G 239 (329)
++..++++
T Consensus 183 d~~~~i~~ 190 (321)
T PF03178_consen 183 DEDTIIVG 190 (321)
T ss_dssp SSSEEEEE
T ss_pred CCcEEEEE
Confidence 55544444
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.25 E-value=6.3 Score=35.82 Aligned_cols=148 Identities=12% Similarity=0.107 Sum_probs=79.9
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..++.+|+.+.+-+.+... +...........+..|++.... ....+++.+|..+++.+++.... ......
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~----~g~~~Iy~~dl~tg~~~~lt~~~---~~~~~p 311 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSK----DGQPEIYVVDIATKALTRITRHR---AIDTEP 311 (448)
T ss_pred cEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeC----CCCeEEEEEECCCCCeEECccCC---CCccce
Confidence 5799999988776655432 1111112222234456554322 22357999999998887775531 111111
Q ss_pred eeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC
Q 020245 128 STAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 128 ~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~ 206 (329)
...-++ .|++...... ...++.+|+.+++++.+.... .........-+++.+++..... ....++.+|++
T Consensus 312 -~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g----~~~~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~ 382 (448)
T PRK04792 312 -SWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEG----EQNLGGSITPDGRSMIMVNRTN-GKFNIARQDLE 382 (448)
T ss_pred -EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCC----CCCcCeeECCCCCEEEEEEecC-CceEEEEEECC
Confidence 122244 4555433222 257999999999988876331 1111122333444333333221 23578899998
Q ss_pred CCceEEee
Q 020245 207 HAQWAQVE 214 (329)
Q Consensus 207 ~~~w~~~~ 214 (329)
+.+.+.+.
T Consensus 383 ~g~~~~lt 390 (448)
T PRK04792 383 TGAMQVLT 390 (448)
T ss_pred CCCeEEcc
Confidence 88877665
No 95
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.18 E-value=7.2 Score=36.27 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=68.3
Q ss_pred eeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCC-CC-C---CCCcceeEEEECCEEEEEccccCCCC
Q 020245 24 HAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTG-DV-P---PPRVGVTMAAVGHTIYMFGGRDGTHK 96 (329)
Q Consensus 24 ~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~-~~-p---~~r~~~~~~~~~~~iyv~GG~~~~~~ 96 (329)
.+-++.++.||+.... ..++.+|..+.+ |+.-.... .. + ........+..+++||+...
T Consensus 63 stPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------ 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------ 128 (527)
T ss_pred cCCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------
Confidence 3345568899986542 468999988654 76433211 00 0 01112234566778887432
Q ss_pred CCCceEEEECCCC--cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe--EEEec
Q 020245 97 ELNELYSFDTRTN--QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK--WIQYP 165 (329)
Q Consensus 97 ~~~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~--W~~~~ 165 (329)
...++.+|..+. .|+.-..... .......+-++.++++|+-...........+..||.++.+ |+.-.
T Consensus 129 -dg~l~ALDa~TGk~~W~~~~~~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 -DARLVALDAKTGKVVWSKKNGDYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred -CCEEEEEECCCCCEEeeccccccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 247999999876 4764322100 0011223344567777764322222234578899998874 76444
No 96
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.12 E-value=6.4 Score=35.49 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=78.6
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..++++|+.+.+-+.+.... .........-.+++|++..-. ....+++.+|..+...+++.... ..-...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~---g~~~~~~~SpDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~lt~~~---~~~~~~ 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE---GLNGAPAWSPDGSKLAFVLSK----DGNPEIYVMDLASRQLSRVTNHP---AIDTEP 292 (430)
T ss_pred CEEEEEECCCCCEEEccCCC---CCcCCeEECCCCCEEEEEEcc----CCCceEEEEECCCCCeEEcccCC---CCcCCe
Confidence 57899999888776655321 111111111123455543211 12358999999998887765431 111111
Q ss_pred eeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCE-EEEEeeeCCCCcccEEEEeCC
Q 020245 128 STAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK-IWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 128 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~ 206 (329)
.....+.+|++...... ...++.+++.+++++.+.... .........-+++ +++..... ....++.+|+.
T Consensus 293 ~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~--~~~~l~~~dl~ 363 (430)
T PRK00178 293 FWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQD--GNFHVAAQDLQ 363 (430)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccC--CceEEEEEECC
Confidence 11112345555432221 257899999988888775331 1111112223444 44443222 12468999998
Q ss_pred CCceEEeec
Q 020245 207 HAQWAQVET 215 (329)
Q Consensus 207 ~~~w~~~~~ 215 (329)
+...+.+..
T Consensus 364 tg~~~~lt~ 372 (430)
T PRK00178 364 RGSVRILTD 372 (430)
T ss_pred CCCEEEccC
Confidence 888877763
No 97
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.87 E-value=6.7 Score=35.07 Aligned_cols=147 Identities=14% Similarity=0.056 Sum_probs=78.1
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..++++|+.+.+...+.... ...........+..|++.... ....+++.+|..+...+.+.... ......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~---~~~~~~~~spDg~~l~~~~~~----~~~~~i~~~d~~~~~~~~l~~~~---~~~~~~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP---GMNGAPAFSPDGSKLAVSLSK----DGNPDIYVMDLDGKQLTRLTNGP---GIDTEP 283 (417)
T ss_pred cEEEEEECCCCCEEEeecCC---CCccceEECCCCCEEEEEECC----CCCccEEEEECCCCCEEECCCCC---CCCCCE
Confidence 56888998877665554321 112221221223456554321 22357999999988777765432 111111
Q ss_pred eeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEE-EEECCEEEEEeeeCCCCcccEEEEeC
Q 020245 128 STAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGL-IVTQGKIWVVYGFAGVEVDDVHCFDP 205 (329)
Q Consensus 128 ~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~v~gG~~~~~~~~~~~~d~ 205 (329)
. ...++ +|++...... ...++.+|..+..+..+.... ...... ...+++.+++....+ ....++.+|+
T Consensus 284 ~-~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~ 353 (417)
T TIGR02800 284 S-WSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG-GGFNIAVMDL 353 (417)
T ss_pred E-ECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC-CceEEEEEeC
Confidence 1 12244 4554433222 247899999988887766432 112222 233555555544322 2357899999
Q ss_pred CCCceEEee
Q 020245 206 AHAQWAQVE 214 (329)
Q Consensus 206 ~~~~w~~~~ 214 (329)
.+..++.+.
T Consensus 354 ~~~~~~~l~ 362 (417)
T TIGR02800 354 DGGGERVLT 362 (417)
T ss_pred CCCCeEEcc
Confidence 887666554
No 98
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.82 E-value=6.1 Score=34.47 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=95.5
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCC--CCcEEEEeeCCCCCCCCcceeEEEE---CCEEEEEccccCCCCCCCceEEE
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLE--TLTWSVADVTGDVPPPRVGVTMAAV---GHTIYMFGGRDGTHKELNELYSF 104 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~ 104 (329)
++.||+....... ...+..|... +.+.+.+.... ......+.+.+ +..||+.. .....+..|
T Consensus 48 ~~~LY~~~e~~~~----~g~v~~~~i~~~~g~L~~~~~~~---~~g~~p~~i~~~~~g~~l~van------y~~g~v~v~ 114 (345)
T PF10282_consen 48 GRRLYVVNEGSGD----SGGVSSYRIDPDTGTLTLLNSVP---SGGSSPCHIAVDPDGRFLYVAN------YGGGSVSVF 114 (345)
T ss_dssp SSEEEEEETTSST----TTEEEEEEEETTTTEEEEEEEEE---ESSSCEEEEEECTTSSEEEEEE------TTTTEEEEE
T ss_pred CCEEEEEEccccC----CCCEEEEEECCCcceeEEeeeec---cCCCCcEEEEEecCCCEEEEEE------ccCCeEEEE
Confidence 4578887654211 1455555544 45676666532 12222223333 34577652 224567777
Q ss_pred ECCCC-cEEEcc---------cCCCCCCCcccceeEee-CC-eEEEEcccCCCcCcceeEEEEcCCCe--EEEecCCCCC
Q 020245 105 DTRTN-QWTLLS---------NGDAGPPHRSYHSTAAD-DR-HVYIFGGCGVSGRLNDLWGFDVVDRK--WIQYPSAGEN 170 (329)
Q Consensus 105 d~~~~-~W~~~~---------~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~~~~~~~~--W~~~~~~~~~ 170 (329)
++... .-.... +.......-.-|.+... ++ .+|+. ... .+.++.|+....+ .+.......
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dlG----~D~v~~~~~~~~~~~l~~~~~~~~- 188 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DLG----ADRVYVYDIDDDTGKLTPVDSIKV- 188 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ETT----TTEEEEEEE-TTS-TEEEEEEEEC-
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ecC----CCEEEEEEEeCCCceEEEeecccc-
Confidence 77653 222211 11000122233444443 33 56554 222 2678888887665 555333311
Q ss_pred CCCCC-CcEEEEEC-CEEEEEeeeCCCCcccEEEEeCC--CCceEEeeccCCCCC---Cc-ceeEEEEE--CCEEEEEcC
Q 020245 171 CKGRG-GPGLIVTQ-GKIWVVYGFAGVEVDDVHCFDPA--HAQWAQVETSGEKPT---AR-SVFSTVGI--GKHIVVYGG 240 (329)
Q Consensus 171 ~~~~~-~~~~~~~~-~~l~v~gG~~~~~~~~~~~~d~~--~~~w~~~~~~~~~p~---~r-~~~~~~~~--~~~i~i~GG 240 (329)
+.+-. .|.+..-+ ..+||+.-.. +.+..|+.. +.+++.+.....+|. .. ..+.++.. +..||+.--
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELS----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTT----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCC----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 12222 23333323 4588886433 455555554 666666554333332 12 22233333 336777532
Q ss_pred ccCCCCCCcCCCCeeeceeEEEEc--CCceeEeecC
Q 020245 241 EVDPSDLGHLGAGKFAGELYSLDT--ETLVWTRWDD 274 (329)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~d~--~~~~W~~~~~ 274 (329)
. .+.|..|++ ++.+.+.+..
T Consensus 265 ~--------------~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 265 G--------------SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp T--------------TTEEEEEEECTTTTTEEEEEE
T ss_pred c--------------CCEEEEEEEecCCCceEEEEE
Confidence 1 346777776 4445555554
No 99
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.76 E-value=7.3 Score=35.22 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=96.5
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..++.+|+.+.+.+.+... +.........-.+.+|++.... ....+++.+|..+...+++.... .... .
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~Lt~~~---~~~~-~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---PGMTFAPRFSPDGRKVVMSLSQ----GGNTDIYTMDLRSGTTTRLTDSP---AIDT-S 294 (435)
T ss_pred CEEEEEECCCCcEEEeecC---CCcccCcEECCCCCEEEEEEec----CCCceEEEEECCCCceEEccCCC---CccC-c
Confidence 6799999998887766542 1221222222233455544321 22467999999988777665431 1111 1
Q ss_pred eeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC
Q 020245 128 STAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 128 ~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~ 206 (329)
....-++ +|++...... ...++.+|..+.+.+.+.... .........-+++.+++..... ....++.+|++
T Consensus 295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~~----~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~ 366 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFGG----GRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPD 366 (435)
T ss_pred eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecCC----CcccCeEECCCCCEEEEEEcCC-CceEEEEEECC
Confidence 1222244 4544332211 257899999888777776431 2222222333444333322211 12478888987
Q ss_pred CCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeec
Q 020245 207 HAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWD 273 (329)
Q Consensus 207 ~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 273 (329)
....+.+... .....-...-+++.+++-...... .....++.+|++...-+.+.
T Consensus 367 ~~~~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 367 GSGERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCceEeccCC-----CCCCCCeECCCCCEEEEEEccCCC--------CCcceEEEEECCCCceEEcc
Confidence 6665555421 111111223344444443221110 00146889998877666555
No 100
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.62 E-value=3 Score=30.41 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=58.3
Q ss_pred eeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC--CcccEEEEe-CCC
Q 020245 131 ADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV--EVDDVHCFD-PAH 207 (329)
Q Consensus 131 ~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~--~~~~~~~~d-~~~ 207 (329)
.++|-+|-..-. .......+..||..+++|+.+..+...........++.++|+|-++.-.... ..-++|.++ .++
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 357777776655 3344578999999999999888752223566677778899999887644322 235778874 556
Q ss_pred CceEEeec
Q 020245 208 AQWAQVET 215 (329)
Q Consensus 208 ~~w~~~~~ 215 (329)
..|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78987754
No 101
>PTZ00421 coronin; Provisional
Probab=92.45 E-value=8.8 Score=35.37 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=36.1
Q ss_pred CeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEE-EECCEEEEEeeeCCCCcccEEEEeCCCCc
Q 020245 134 RHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLI-VTQGKIWVVYGFAGVEVDDVHCFDPAHAQ 209 (329)
Q Consensus 134 ~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~v~gG~~~~~~~~~~~~d~~~~~ 209 (329)
+.+++.|+.+ ..+..||+.+.+-...-.. ....-.++. ..++.+++.++.+ ..+..||+.+.+
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~----h~~~V~sla~spdG~lLatgs~D----g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKC----HSDQITSLEWNLDGSLLCTTSKD----KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcC----CCCceEEEEEECCCCEEEEecCC----CEEEEEECCCCc
Confidence 3577777754 4688899887653222111 111112222 2367777777755 478889987665
No 102
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.34 E-value=8.3 Score=34.85 Aligned_cols=189 Identities=17% Similarity=0.129 Sum_probs=95.3
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..++++|+.+++.+.+... +...........+.+|++..... ...+++.+|+.+...+++.... ......
T Consensus 228 ~~l~~~dl~~g~~~~l~~~---~g~~~~~~~SpDG~~l~~~~s~~----g~~~Iy~~d~~~g~~~~lt~~~---~~~~~~ 297 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF---RGINGAPSFSPDGRRLALTLSRD----GNPEIYVMDLGSRQLTRLTNHF---GIDTEP 297 (433)
T ss_pred cEEEEEECCCCCEEEeccC---CCCccCceECCCCCEEEEEEeCC----CCceEEEEECCCCCeEECccCC---CCccce
Confidence 5688999988776665532 11111111112234565443211 2357999999988776665431 111111
Q ss_pred eeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEE-EECC-EEEEEeeeCCCCcccEEEEe
Q 020245 128 STAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLI-VTQG-KIWVVYGFAGVEVDDVHCFD 204 (329)
Q Consensus 128 ~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~-~l~v~gG~~~~~~~~~~~~d 204 (329)
...-++ +|++...... ...++.++..+++.+.+.... ....... .-++ .|++..+.. ....++.+|
T Consensus 298 -~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~--~~~~I~v~d 366 (433)
T PRK04922 298 -TWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSG--GQYRIAVMD 366 (433)
T ss_pred -EECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCC--CceeEEEEE
Confidence 222244 4544433221 257899999888887776331 1222222 2344 454443321 224788999
Q ss_pred CCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeec
Q 020245 205 PAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWD 273 (329)
Q Consensus 205 ~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 273 (329)
+.+.+.+.+.... .. ..-...-+++.+++...... ...++.+|++...=+.+.
T Consensus 367 ~~~g~~~~Lt~~~---~~--~~p~~spdG~~i~~~s~~~g-----------~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 367 LSTGSVRTLTPGS---LD--ESPSFAPNGSMVLYATREGG-----------RGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCCCCeEECCCCC---CC--CCceECCCCCEEEEEEecCC-----------ceEEEEEECCCCceEEcc
Confidence 9888877665321 11 11122335555454432111 246888888765433443
No 103
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.21 E-value=8.5 Score=34.69 Aligned_cols=148 Identities=8% Similarity=0.024 Sum_probs=79.8
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
...++++|+.+++-+.+.... . ........-++ +|++...... ...++.+|+.+.+.+.+.... ....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~---g-~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~----~~~~ 290 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFE---G-LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHP----AIDT 290 (430)
T ss_pred CCEEEEEECCCCCEEEccCCC---C-CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCC----CCcC
Confidence 457999999988777765442 1 11111122244 5554332221 157999999999888776542 1111
Q ss_pred cEEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCCcCCCCe
Q 020245 177 PGLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIG-KHIVVYGGEVDPSDLGHLGAGK 254 (329)
Q Consensus 177 ~~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~ 254 (329)
......+++ |++..... ....++.++..+.+++.+...+ .........-+ +.|++......
T Consensus 291 ~~~~spDg~~i~f~s~~~--g~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~----------- 353 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRG--GKPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG----------- 353 (430)
T ss_pred CeEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC-----------
Confidence 112223444 55443222 2357999999888887775321 11111122223 35555432110
Q ss_pred eeceeEEEEcCCceeEeecC
Q 020245 255 FAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 255 ~~~~~~~~d~~~~~W~~~~~ 274 (329)
...++.+|+.+...+.+..
T Consensus 354 -~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 -NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred -ceEEEEEECCCCCEEEccC
Confidence 2369999999888877764
No 104
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.84 E-value=6.1 Score=32.20 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=65.2
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCCCceEEEECCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~ 108 (329)
+++.++.++. ...+..||..+.+....... ....-..+... ++++++.++.+ ..+..||..+
T Consensus 62 ~~~~l~~~~~-------~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSS-------DKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcC-------CCeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCC
Confidence 3345555553 25788888876432211110 11111222222 23566665523 4688888875
Q ss_pred CcEEEcccCCCCCCCcccceeEeeC-CeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEE-CCEE
Q 020245 109 NQWTLLSNGDAGPPHRSYHSTAADD-RHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVT-QGKI 186 (329)
Q Consensus 109 ~~W~~~~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~l 186 (329)
.+-...-.. ....-..+.... +.+++.|..+ ..+..||..+.+-...-.. ....-.++... ++..
T Consensus 125 ~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 125 GKCLTTLRG----HTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTG----HTGEVNSVAFSPDGEK 191 (289)
T ss_pred cEEEEEecc----CCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEec----CccccceEEECCCcCE
Confidence 432221111 111112222233 4554444422 4678888875432211111 11122223333 3435
Q ss_pred EEEeeeCCCCcccEEEEeCCCCc
Q 020245 187 WVVYGFAGVEVDDVHCFDPAHAQ 209 (329)
Q Consensus 187 ~v~gG~~~~~~~~~~~~d~~~~~ 209 (329)
+++++.+ ..+..||....+
T Consensus 192 l~~~~~~----~~i~i~d~~~~~ 210 (289)
T cd00200 192 LLSSSSD----GTIKLWDLSTGK 210 (289)
T ss_pred EEEecCC----CcEEEEECCCCc
Confidence 5555443 578888886543
No 105
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.60 E-value=10 Score=34.29 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=78.7
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
...++++|..+++-+.+.... .. .......-++ +|++...... ...++.+|+.+.+...+.... ....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~---g~-~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~ 295 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFR---GI-NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHF----GIDT 295 (433)
T ss_pred CcEEEEEECCCCCEEEeccCC---CC-ccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCC----CCcc
Confidence 457999999888777665442 11 1112222344 5555433222 257999999998877665432 1111
Q ss_pred cEEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeE-EEEE-CCEEEEEcCccCCCCCCcCCCC
Q 020245 177 PGLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFS-TVGI-GKHIVVYGGEVDPSDLGHLGAG 253 (329)
Q Consensus 177 ~~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~-~~~~-~~~i~i~GG~~~~~~~~~~~~~ 253 (329)
.....-+++ |++.....+ ...+|.+|..+.+.+.+...+ ..... ...- ++.|++..+.. .
T Consensus 296 ~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~-~--------- 358 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSG-G--------- 358 (433)
T ss_pred ceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCC-C---------
Confidence 112223444 444332222 257899998888877765321 11111 1122 34555544311 0
Q ss_pred eeeceeEEEEcCCceeEeecC
Q 020245 254 KFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 254 ~~~~~~~~~d~~~~~W~~~~~ 274 (329)
...++.+|+.+...+.+..
T Consensus 359 --~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 --QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred --ceeEEEEECCCCCeEECCC
Confidence 2378999998887776654
No 106
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.27 E-value=8.7 Score=32.91 Aligned_cols=175 Identities=13% Similarity=0.164 Sum_probs=88.4
Q ss_pred EEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCC--
Q 020245 32 KVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTN-- 109 (329)
Q Consensus 32 ~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~-- 109 (329)
.||.+......+. -..+.+|+..++-+.+.... .+..--+|.++.-++++.+..- .....+-+|-..+.
T Consensus 53 ~LY~v~~~~~~gg---vaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~An-----Y~~g~v~v~p~~~dG~ 123 (346)
T COG2706 53 HLYVVNEPGEEGG---VAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVAN-----YHSGSVSVYPLQADGS 123 (346)
T ss_pred EEEEEEecCCcCc---EEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEE-----ccCceEEEEEcccCCc
Confidence 6888765433222 23556676667776666533 2222224545444554333322 22355666655432
Q ss_pred cEE---EcccCCCCCCCcc----cceeE-eeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEE
Q 020245 110 QWT---LLSNGDAGPPHRS----YHSTA-ADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIV 181 (329)
Q Consensus 110 ~W~---~~~~~~~~p~~r~----~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 181 (329)
-|. .+...+..|.+|. .|.+. .-++++++.--.. ++.+..|+...+.-+...+....|.....|-+..
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH 199 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH 199 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----CceEEEEEcccCccccccccccCCCCCcceEEEc
Confidence 222 1222233345552 22222 2344444433322 2678889888776655554432233333444444
Q ss_pred ECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCC
Q 020245 182 TQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPT 221 (329)
Q Consensus 182 ~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~ 221 (329)
-+++ .|++.-.+ ..-.++.||....+.+.+.....+|.
T Consensus 200 pn~k~aY~v~EL~--stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 200 PNGKYAYLVNELN--STVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred CCCcEEEEEeccC--CEEEEEEEcCCCceEEEeeeeccCcc
Confidence 4554 68876433 22467777877788888877656663
No 107
>PTZ00421 coronin; Provisional
Probab=90.50 E-value=14 Score=34.03 Aligned_cols=108 Identities=9% Similarity=0.075 Sum_probs=53.5
Q ss_pred CEEEEEccccCCCCCCCceEEEECCCCcEE-EcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeE
Q 020245 83 HTIYMFGGRDGTHKELNELYSFDTRTNQWT-LLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 161 (329)
Q Consensus 83 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W 161 (329)
+.+++.||.+ ..+..||..+.+-. .+... ... -.......++.+++.|+.+ ..+..||+.+.+-
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l~~h---~~~-V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVIKCH---SDQ-ITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEEcCC---CCc-eEEEEEECCCCEEEEecCC-----CEEEEEECCCCcE
Confidence 3566766655 46888898876422 11111 111 1111122366777777764 4688899987653
Q ss_pred EE-ecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCC
Q 020245 162 IQ-YPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHA 208 (329)
Q Consensus 162 ~~-~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~ 208 (329)
.. +... ............++..++..|.+...-..+..||+.+.
T Consensus 203 v~tl~~H---~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 203 VSSVEAH---ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred EEEEecC---CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 22 2111 01111112222334455555554333356888887653
No 108
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.39 E-value=11 Score=32.77 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=105.2
Q ss_pred ceEEEeCCCCcEEEEeeCCCCCCCCccee-EEE--ECCEEEEEccccCCCCCCCceEEEECC--CCcEEEcccCCCCCCC
Q 020245 49 NLHVFDLETLTWSVADVTGDVPPPRVGVT-MAA--VGHTIYMFGGRDGTHKELNELYSFDTR--TNQWTLLSNGDAGPPH 123 (329)
Q Consensus 49 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~-~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~p~~ 123 (329)
.++.||..+.++..+...... ...+ ++. -++.||+..... .....+..|+.. +.+.+.+..... .+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~--~g 86 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEG----ENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPS--GG 86 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEES----SSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEE--SS
T ss_pred EEEEEcCCCCCceEeeeecCC----CCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeecc--CC
Confidence 344566688888877652211 1122 222 346788885322 134456555544 467777665521 12
Q ss_pred cc-cceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCC-eEEEec---------CCCCCCCCCCCcEEEEE-C-CEEEEE
Q 020245 124 RS-YHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDR-KWIQYP---------SAGENCKGRGGPGLIVT-Q-GKIWVV 189 (329)
Q Consensus 124 r~-~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~-~W~~~~---------~~~~~~~~~~~~~~~~~-~-~~l~v~ 189 (329)
.. .|.++.-++ .+|+. -+.. ..+..|++..+ +-.... +.+.......-|.+... + ..+|+.
T Consensus 87 ~~p~~i~~~~~g~~l~va-ny~~----g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVA-NYGG----GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp SCEEEEEECTTSSEEEEE-ETTT----TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CCcEEEEEecCCCEEEEE-EccC----CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 22 232222234 55554 3222 56777777663 222221 11111112222333333 3 346665
Q ss_pred eeeCCCCcccEEEEeCCCCc--eEEeeccCCCCCCc-ceeEEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcC
Q 020245 190 YGFAGVEVDDVHCFDPAHAQ--WAQVETSGEKPTAR-SVFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTE 265 (329)
Q Consensus 190 gG~~~~~~~~~~~~d~~~~~--w~~~~~~~~~p~~r-~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~ 265 (329)
.- ..+.++.|+.+..+ ....... ..|..- -.|.+..- +..+|++.-. .+.|..|+..
T Consensus 162 dl----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~--------------s~~v~v~~~~ 222 (345)
T PF10282_consen 162 DL----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL--------------SNTVSVFDYD 222 (345)
T ss_dssp ET----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT--------------TTEEEEEEEE
T ss_pred ec----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC--------------CCcEEEEeec
Confidence 31 23688888886665 5443322 222222 22333222 3488888754 2345555554
Q ss_pred --CceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEec
Q 020245 266 --TLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTP 322 (329)
Q Consensus 266 --~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~ 322 (329)
...++.+...+........... ...+++..+.+.||+.-- . .+.|.+|++
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~ispdg~~lyvsnr-~-----~~sI~vf~~ 274 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENA-PAEIAISPDGRFLYVSNR-G-----SNSISVFDL 274 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSS-EEEEEE-TTSSEEEEEEC-T-----TTEEEEEEE
T ss_pred ccCCceeEEEEeeeccccccccCC-ceeEEEecCCCEEEEEec-c-----CCEEEEEEE
Confidence 6666665541111111111112 134444434255666432 1 346677776
No 109
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.36 E-value=11 Score=32.47 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=78.0
Q ss_pred CeEEEEcccCC-Cc---Cc-ceeEEEEcCCC-----eEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEE
Q 020245 134 RHVYIFGGCGV-SG---RL-NDLWGFDVVDR-----KWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCF 203 (329)
Q Consensus 134 ~~i~v~GG~~~-~~---~~-~~~~~~~~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~ 203 (329)
..++++|-... .. .. ..+..|+..+. +.+.+.... ....-.+++.+++++.+..| ..+..|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~---~~g~V~ai~~~~~~lv~~~g------~~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE---VKGPVTAICSFNGRLVVAVG------NKLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE---ESS-EEEEEEETTEEEEEET------TEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe---ecCcceEhhhhCCEEEEeec------CEEEEE
Confidence 35666665211 11 22 67899999885 666665542 34445666677888666555 688888
Q ss_pred eCCCCc-eEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCC
Q 020245 204 DPAHAQ-WAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHP 282 (329)
Q Consensus 204 d~~~~~-w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p 282 (329)
++...+ +...... ..+-...++...++.|++ |.... .-.+..|+.+..+...+.. -.
T Consensus 113 ~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~v-gD~~~------------sv~~~~~~~~~~~l~~va~------d~ 170 (321)
T PF03178_consen 113 DLDNSKTLLKKAFY---DSPFYITSLSVFKNYILV-GDAMK------------SVSLLRYDEENNKLILVAR------DY 170 (321)
T ss_dssp EEETTSSEEEEEEE----BSSSEEEEEEETTEEEE-EESSS------------SEEEEEEETTTE-EEEEEE------ES
T ss_pred EccCcccchhhhee---cceEEEEEEeccccEEEE-EEccc------------CEEEEEEEccCCEEEEEEe------cC
Confidence 887777 7777643 234455566667775554 54321 1246677887777888876 45
Q ss_pred CCCCcceeccccc-CC
Q 020245 283 GPRGWCAFAGGLR-GG 297 (329)
Q Consensus 283 ~~r~~~~~~~~~~-~~ 297 (329)
.++.- .++..+ ++
T Consensus 171 ~~~~v--~~~~~l~d~ 184 (321)
T PF03178_consen 171 QPRWV--TAAEFLVDE 184 (321)
T ss_dssp S-BEE--EEEEEE-SS
T ss_pred CCccE--EEEEEecCC
Confidence 56665 566666 53
No 110
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.20 E-value=14 Score=33.42 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=94.8
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..++.+|+.+.+-+.+... +.........-.+.+|++.... ....+++.+|..+.+.+++.... ......
T Consensus 223 ~~i~i~dl~~G~~~~l~~~---~~~~~~~~~SPDG~~La~~~~~----~g~~~I~~~d~~tg~~~~lt~~~---~~~~~~ 292 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF---PRHNGAPAFSPDGSKLAFALSK----TGSLNLYVMDLASGQIRQVTDGR---SNNTEP 292 (429)
T ss_pred cEEEEEECCCCCeEEccCC---CCCcCCeEECCCCCEEEEEEcC----CCCcEEEEEECCCCCEEEccCCC---CCcCce
Confidence 5688888887765555432 1111111111223456554321 12346999999988877765431 111111
Q ss_pred eeEeeCCe-EEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC
Q 020245 128 STAADDRH-VYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 128 ~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~ 206 (329)
...-+++ |+....... ...++.+|+.+..-+.+.... .........-+++.+++....+ ....++.+|++
T Consensus 293 -~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~ 363 (429)
T PRK03629 293 -TWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLA 363 (429)
T ss_pred -EECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccC-CCceEEEEECC
Confidence 1222444 444332211 257889999888776664331 1111222233455444433221 22468899998
Q ss_pred CCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeec
Q 020245 207 HAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWD 273 (329)
Q Consensus 207 ~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 273 (329)
+..++.+.... ........-+++.+++...... ...++..+++...=+.+.
T Consensus 364 ~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~-----------~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 364 TGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM-----------GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC-----------ceEEEEEECCCCCeEECc
Confidence 88888776311 1111122346666666543211 234666676555444443
No 111
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=90.16 E-value=16 Score=34.12 Aligned_cols=222 Identities=10% Similarity=0.112 Sum_probs=107.8
Q ss_pred eeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEE
Q 020245 7 TWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIY 86 (329)
Q Consensus 7 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iy 86 (329)
+|...... .-.++.--+++++++ +.+.||.+. .....+. .+..........+.++..-..++..++++
T Consensus 280 ~wv~~~~r--~~h~hdvrs~av~~~-~l~sgG~d~--------~l~i~~s-~~~~~~~h~~~~~~p~~~~v~~a~~~~L~ 347 (691)
T KOG2048|consen 280 EWVINSRR--DLHAHDVRSMAVIEN-ALISGGRDF--------TLAICSS-REFKNMDHRQKNLFPASDRVSVAPENRLL 347 (691)
T ss_pred ceeeeccc--cCCcccceeeeeecc-eEEecceee--------EEEEccc-cccCchhhhccccccccceeecCccceEE
Confidence 37766543 445677778888888 666788542 1112211 11111111111224455555566677777
Q ss_pred EEccccCCCCCCCceEEEECC--CC--c---EEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCC
Q 020245 87 MFGGRDGTHKELNELYSFDTR--TN--Q---WTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDR 159 (329)
Q Consensus 87 v~GG~~~~~~~~~~~~~~d~~--~~--~---W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~ 159 (329)
++= ....-.+|+.-.. ++ . --++...+ .....+++..-++.+.++|-... ..+++.++..+
T Consensus 348 ~~w-----~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~---~~nIs~~aiSPdg~~Ia~st~~~----~~iy~L~~~~~ 415 (691)
T KOG2048|consen 348 VLW-----KAHGVDLWRLGSVILQGEYNYIHLLKLFTKE---KENISCAAISPDGNLIAISTVSR----TKIYRLQPDPN 415 (691)
T ss_pred EEe-----ccccccceeccCcccccccChhhheeeecCC---ccceeeeccCCCCCEEEEeeccc----eEEEEeccCcc
Confidence 763 1112222222111 00 0 01111111 11222333334556666654322 34555555432
Q ss_pred -eEEEecCCCCCCCCCCCcEEE---EECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCC-Cccee-EEEEECC
Q 020245 160 -KWIQYPSAGENCKGRGGPGLI---VTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPT-ARSVF-STVGIGK 233 (329)
Q Consensus 160 -~W~~~~~~~~~~~~~~~~~~~---~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~-~r~~~-~~~~~~~ 233 (329)
+-+.+..+ |..+...+.. .-++++++.. ....+++.++.++.+.+++....+.+. +-..+ ..-..++
T Consensus 416 vk~~~v~~~---~~~~~~a~~i~ftid~~k~~~~s----~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~ 488 (691)
T KOG2048|consen 416 VKVINVDDV---PLALLDASAISFTIDKNKLFLVS----KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGN 488 (691)
T ss_pred eeEEEeccc---hhhhccceeeEEEecCceEEEEe----cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCC
Confidence 33334444 3444333332 3356677665 122567778888877777664322211 11111 1223367
Q ss_pred EEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 234 HIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 234 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
.|.++++. ..|++|++++.+-..+..
T Consensus 489 yiaa~~t~---------------g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 489 YIAAISTR---------------GQIFVYNLETLESHLLKV 514 (691)
T ss_pred EEEEEecc---------------ceEEEEEcccceeecchh
Confidence 88888863 589999999999888874
No 112
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.95 E-value=12 Score=32.28 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=68.1
Q ss_pred EEEEEcCccCCCCccCCceEEEeCCC-CcEEEEeeCCCCCCCCcceeEEEE--CCEEEEEccccCCCCCCCceEEEECC-
Q 020245 32 KVYAFGGEFTPRVPVDNNLHVFDLET-LTWSVADVTGDVPPPRVGVTMAAV--GHTIYMFGGRDGTHKELNELYSFDTR- 107 (329)
Q Consensus 32 ~l~~~GG~~~~~~~~~~~~~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~- 107 (329)
++|+.... .+.+..||..+ .+++.+.... .....+.++.. +..||+.+. ....+..|+..
T Consensus 3 ~~y~~~~~-------~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~ 66 (330)
T PRK11028 3 IVYIASPE-------SQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIAD 66 (330)
T ss_pred EEEEEcCC-------CCCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECC
Confidence 46666442 26788888853 4666555432 21111222222 345777532 13567777765
Q ss_pred CCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCe--EEEecCCCCCCCCCCCcEEEEE-C
Q 020245 108 TNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRK--WIQYPSAGENCKGRGGPGLIVT-Q 183 (329)
Q Consensus 108 ~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~ 183 (329)
+.+++.+..... + ....+.+..-++ .+|+. .... +.+..|++.++. .+.+... +....-|.++.. +
T Consensus 67 ~g~l~~~~~~~~-~-~~p~~i~~~~~g~~l~v~-~~~~----~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~~p~ 136 (330)
T PRK11028 67 DGALTFAAESPL-P-GSPTHISTDHQGRFLFSA-SYNA----NCVSVSPLDKDGIPVAPIQII---EGLEGCHSANIDPD 136 (330)
T ss_pred CCceEEeeeecC-C-CCceEEEECCCCCEEEEE-EcCC----CeEEEEEECCCCCCCCceeec---cCCCcccEeEeCCC
Confidence 456665543311 1 111233333344 45554 3322 567777775431 1112211 111222333333 3
Q ss_pred C-EEEEEeeeCCCCcccEEEEeCCC
Q 020245 184 G-KIWVVYGFAGVEVDDVHCFDPAH 207 (329)
Q Consensus 184 ~-~l~v~gG~~~~~~~~~~~~d~~~ 207 (329)
+ .+|+..- ..+.+..||+.+
T Consensus 137 g~~l~v~~~----~~~~v~v~d~~~ 157 (330)
T PRK11028 137 NRTLWVPCL----KEDRIRLFTLSD 157 (330)
T ss_pred CCEEEEeeC----CCCEEEEEEECC
Confidence 4 4555432 226788898865
No 113
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=89.84 E-value=14 Score=32.99 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=78.6
Q ss_pred CceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCc
Q 020245 99 NELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGP 177 (329)
Q Consensus 99 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 177 (329)
..++++|..+++-..+.... ..... ....-++ .|++...... ...++.+|+.+...+.+..... . ...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~---~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~---~-~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP---GMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPG---I-DTE 282 (417)
T ss_pred cEEEEEECCCCCEEEeecCC---CCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCC---C-CCC
Confidence 57999999888766555431 11222 2222244 5655433221 2578999999888777765421 1 111
Q ss_pred EEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeE-EEEECCEEEEEcCccCCCCCCcCCCCee
Q 020245 178 GLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFS-TVGIGKHIVVYGGEVDPSDLGHLGAGKF 255 (329)
Q Consensus 178 ~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~ 255 (329)
.....+++ |++.....+ ...++.+|..+.+++.+.... ..... ...-+++.+++......
T Consensus 283 ~~~s~dg~~l~~~s~~~g--~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~----------- 344 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGG--SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG----------- 344 (417)
T ss_pred EEECCCCCEEEEEECCCC--CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCC-----------
Confidence 11223444 444332221 247999999888877765321 11111 22224555555432211
Q ss_pred eceeEEEEcCCceeEeecC
Q 020245 256 AGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 256 ~~~~~~~d~~~~~W~~~~~ 274 (329)
...++.+|+.+..++.+..
T Consensus 345 ~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ceEEEEEeCCCCCeEEccC
Confidence 2478999998877766653
No 114
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.76 E-value=14 Score=32.99 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=84.4
Q ss_pred CCceEEEECCCC-----cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe---EEE-ecCCC
Q 020245 98 LNELYSFDTRTN-----QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK---WIQ-YPSAG 168 (329)
Q Consensus 98 ~~~~~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~---W~~-~~~~~ 168 (329)
.+.++..|.... .|..+... ..-..+.+...++.+|+.-.. ......+..+++.+.. |.. +.+..
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCC
Confidence 478999999875 78888764 222333444558899988663 3344678888888765 664 33321
Q ss_pred CCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEE-E-CCE-EEEEcCccCCC
Q 020245 169 ENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVG-I-GKH-IVVYGGEVDPS 245 (329)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~-~-~~~-i~i~GG~~~~~ 245 (329)
....-..+...++.|++.--.+ ....+.+++.. ..|..... .+|..-.-..... . .+. .|.+.+...
T Consensus 325 ---~~~~l~~~~~~~~~Lvl~~~~~--~~~~l~v~~~~-~~~~~~~~--~~p~~g~v~~~~~~~~~~~~~~~~ss~~~-- 394 (414)
T PF02897_consen 325 ---EDVSLEDVSLFKDYLVLSYREN--GSSRLRVYDLD-DGKESREI--PLPEAGSVSGVSGDFDSDELRFSYSSFTT-- 394 (414)
T ss_dssp ---SSEEEEEEEEETTEEEEEEEET--TEEEEEEEETT--TEEEEEE--ESSSSSEEEEEES-TT-SEEEEEEEETTE--
T ss_pred ---CceeEEEEEEECCEEEEEEEEC--CccEEEEEECC-CCcEEeee--cCCcceEEeccCCCCCCCEEEEEEeCCCC--
Confidence 2223344456788888765433 44788999987 33444332 2222211111111 1 233 444455432
Q ss_pred CCCcCCCCeeeceeEEEEcCCceeEeec
Q 020245 246 DLGHLGAGKFAGELYSLDTETLVWTRWD 273 (329)
Q Consensus 246 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 273 (329)
-..++.||+++++.+.+.
T Consensus 395 ----------P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 395 ----------PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ----------EEEEEEEETTTTCEEEEE
T ss_pred ----------CCEEEEEECCCCCEEEEE
Confidence 358999999999877764
No 115
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=89.19 E-value=15 Score=32.43 Aligned_cols=239 Identities=19% Similarity=0.191 Sum_probs=104.5
Q ss_pred CceEEEeCCCCcE-EEEeeCC---CCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCC
Q 020245 48 NNLHVFDLETLTW-SVADVTG---DVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPH 123 (329)
Q Consensus 48 ~~~~~~d~~~~~W-~~~~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~ 123 (329)
+.+..+|..+.+= +.++... ..+.+|...-..+..+..|++- -....+++..|....+=...... ...
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~-----lkd~~~I~vVdy~d~~~~~~~~i---~~g 171 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN-----LKDTGEIWVVDYSDPKNLKVTTI---KVG 171 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE-----ETTTTEEEEEETTTSSCEEEEEE---E--
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE-----EccCCeEEEEEeccccccceeee---ccc
Confidence 6788899887654 3343321 1123444333333455556652 34467888888665421121222 123
Q ss_pred cccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEEC-CEEEEEeeeCCCCcccEE
Q 020245 124 RSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQ-GKIWVVYGFAGVEVDDVH 201 (329)
Q Consensus 124 r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~l~v~gG~~~~~~~~~~ 201 (329)
+.-|-.... +++.|+.+-... +.+-..|.++++-..+......|.+.....+.... +-++..++.... .-...
T Consensus 172 ~~~~D~~~dpdgry~~va~~~s----n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~-~~~~i 246 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGS----NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF-AIPLI 246 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGG----TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS-EEEEE
T ss_pred ccccccccCcccceeeeccccc----ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce-ecccc
Confidence 344444433 444444432222 57888999988765544433333333333333333 234444432211 00112
Q ss_pred EEeC----CCCceEEeeccCCCCCCcceeEEEEECC--EEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCcee-EeecC
Q 020245 202 CFDP----AHAQWAQVETSGEKPTARSVFSTVGIGK--HIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVW-TRWDD 274 (329)
Q Consensus 202 ~~d~----~~~~w~~~~~~~~~p~~r~~~~~~~~~~--~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~ 274 (329)
--++ ....|+.+... +..-.++.+....+ .+++---. .. . ...+..+|.++..= ..+..
T Consensus 247 g~~~v~v~d~~~wkvv~~I---~~~G~glFi~thP~s~~vwvd~~~--~~--------~-~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTI---PTQGGGLFIKTHPDSRYVWVDTFL--NP--------D-ADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp E--TTT-STTTBTSEEEEE---E-SSSS--EE--TT-SEEEEE-TT---S--------S-HT-EEEEECCGTEEEE-HHH
T ss_pred cCCccccchhhcCeEEEEE---ECCCCcceeecCCCCccEEeeccC--CC--------C-CceEEEEECcCcceeEEEec
Confidence 2222 34668777643 22223334444433 56663111 00 1 46899999998721 22221
Q ss_pred CCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCc
Q 020245 275 GPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGI 327 (329)
Q Consensus 275 ~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~ 327 (329)
.+..|.. |.-..-++ +.+|+--..... .|.+||.++.+.
T Consensus 313 ------~~~~~~~--h~ef~~dG-~~v~vS~~~~~~-----~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 313 ------GPGKRVV--HMEFNPDG-KEVWVSVWDGNG-----AIVVYDAKTLKE 351 (369)
T ss_dssp ------HHT--EE--EEEE-TTS-SEEEEEEE--TT-----EEEEEETTTTEE
T ss_pred ------cCCCcEe--ccEECCCC-CEEEEEEecCCC-----EEEEEECCCcEE
Confidence 1222333 44444444 567775543221 788999887654
No 116
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=89.12 E-value=11 Score=30.71 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=83.9
Q ss_pred cEEEEeeCC--CCCCCCcceeEEE-ECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCe
Q 020245 59 TWSVADVTG--DVPPPRVGVTMAA-VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRH 135 (329)
Q Consensus 59 ~W~~~~~~~--~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 135 (329)
.|+..+++. ..+.|-.++.... -.|.|++.||.. .++..|.++++.++.--- +.-+-|+++.-+..
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~rG----HtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYRG----HTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEcC----CcceeeeeeecccC
Confidence 365554432 2345555555444 568899999866 789999999987654322 33455665543222
Q ss_pred EE-EEcccCCCcCcceeEEEEcCCCeEEEecCCCCC-CCCC----CCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCc
Q 020245 136 VY-IFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGEN-CKGR----GGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQ 209 (329)
Q Consensus 136 i~-v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~~----~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~ 209 (329)
-- +-|+.+ .++-.+|.+|.+-.++-..-.. ..-| ....+...+..-.|+||. ..+-.+++...+
T Consensus 169 ~qilsG~ED-----GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-----p~lslwhLrsse 238 (325)
T KOG0649|consen 169 GQILSGAED-----GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-----PKLSLWHLRSSE 238 (325)
T ss_pred cceeecCCC-----ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-----CceeEEeccCCC
Confidence 22 334443 4677888888865444332211 1111 122444556667777764 355556666655
Q ss_pred eEEeeccCCCCCCcceeEEEEECCEEEEEc
Q 020245 210 WAQVETSGEKPTARSVFSTVGIGKHIVVYG 239 (329)
Q Consensus 210 w~~~~~~~~~p~~r~~~~~~~~~~~i~i~G 239 (329)
-+.+- |.|...|-+..+++.+++.|
T Consensus 239 ~t~vf-----pipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 239 STCVF-----PIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ceEEE-----ecccceeEeeeecceEEEec
Confidence 55543 23333333434455555555
No 117
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=88.79 E-value=13 Score=31.04 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=90.1
Q ss_pred CcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEe-eCCeE
Q 020245 58 LTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAA-DDRHV 136 (329)
Q Consensus 58 ~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~i 136 (329)
+.|..+..+.. .+...-+.+..+++.+++|+.. .+..-|-...+|++.... ..|+.+..+. .+.+-
T Consensus 32 ~p~~~velp~~--s~~l~ia~~~~g~~gwlVg~rg-------tiletdd~g~tw~qal~~----~gr~~f~sv~f~~~eg 98 (339)
T COG4447 32 NPWTDVELPTL--SPTLDIAFTESGSHGWLVGGRG-------TILETDDGGITWAQALDF----LGRHAFHSVSFLGMEG 98 (339)
T ss_pred Ccceeeecccc--CcccceeEeecCcceEEEcCcc-------eEEEecCCcccchhhhch----hhhhheeeeeeecccc
Confidence 45776665542 3444556667788999999876 456667777889887765 3354444443 34445
Q ss_pred EEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECC-EEEEEeeeCCCCcccEEEEeCCCCceEEeec
Q 020245 137 YIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQG-KIWVVYGFAGVEVDDVHCFDPAHAQWAQVET 215 (329)
Q Consensus 137 ~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~ 215 (329)
++.|-- ..++.-+..-++|.+++.....+.. -.+....++ .-+++|-. ..++.-+-....|+.+..
T Consensus 99 w~vGe~------sqll~T~DgGqsWARi~~~e~~eg~--~~sI~f~d~q~g~m~gd~-----Gail~T~DgGk~Wk~l~e 165 (339)
T COG4447 99 WIVGEP------SQLLHTTDGGQSWARIPLSEKLEGF--PDSITFLDDQRGEMLGDQ-----GAILKTTDGGKNWKALVE 165 (339)
T ss_pred cccCCc------ceEEEecCCCcchhhchhhcCCCCC--cceeEEecchhhhhhccc-----ceEEEecCCcccHhHhcc
Confidence 555432 3456666677899999876533222 223333443 34565532 356665666788998875
Q ss_pred cCCCCCCcceeEEEEECCEEEEEcC
Q 020245 216 SGEKPTARSVFSTVGIGKHIVVYGG 240 (329)
Q Consensus 216 ~~~~p~~r~~~~~~~~~~~i~i~GG 240 (329)
.. .+...........++..+.+|-
T Consensus 166 ~~-v~~~~~n~ia~s~dng~vaVg~ 189 (339)
T COG4447 166 KA-VGLAVPNEIARSADNGYVAVGA 189 (339)
T ss_pred cc-cchhhhhhhhhhccCCeEEEec
Confidence 32 1111112223345667777775
No 118
>PRK04043 tolB translocation protein TolB; Provisional
Probab=88.25 E-value=19 Score=32.43 Aligned_cols=190 Identities=12% Similarity=0.021 Sum_probs=105.2
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEE-ECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSY 126 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~ 126 (329)
.++|++|+.+.+-+.+.... ......... .+.+|.+.-.. ....++|.+|..+..++++.... ..-..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl~~g~~~~LT~~~---~~d~~ 281 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAP----KGQPDIYLYDTNTKTLTQITNYP---GIDVN 281 (419)
T ss_pred CEEEEEECCCCcEEEEecCC----CcEEeeEECCCCCEEEEEEcc----CCCcEEEEEECCCCcEEEcccCC---CccCc
Confidence 47999999888766665421 111112222 23455554322 23468999999999888886542 11111
Q ss_pred ceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCC-----CcccEE
Q 020245 127 HSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGV-----EVDDVH 201 (329)
Q Consensus 127 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~-----~~~~~~ 201 (329)
......+.+|++...... ...++++|..+++.+++.... .... ...-+++.+++-..... ...+++
T Consensus 282 p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g-----~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG-----KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred cEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCC-----CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 122222446777654322 268999999999887776542 1222 33345553333332221 225899
Q ss_pred EEeCCCCceEEeeccCCCCCCcceeEEEEECCE-EEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 202 CFDPAHAQWAQVETSGEKPTARSVFSTVGIGKH-IVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 202 ~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~-i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
.+|.++..++.+...+ ....-...-+++ |+..... .. ...++.++++.+.=..++.
T Consensus 353 v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~~-----------~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 353 LISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-GN-----------QSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-CC-----------cEEEEEEecCCCeeEEeec
Confidence 9999999888887421 111122233554 4444321 11 3468889988775555553
No 119
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.97 E-value=26 Score=32.64 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=66.2
Q ss_pred eeEEEECCEEEEEccccCCCCCCCceEEEECCCC--cEEEcccCCCC--C---CCcccceeEeeCCeEEEEcccCCCcCc
Q 020245 76 VTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTN--QWTLLSNGDAG--P---PHRSYHSTAADDRHVYIFGGCGVSGRL 148 (329)
Q Consensus 76 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~--p---~~r~~~~~~~~~~~i~v~GG~~~~~~~ 148 (329)
.+-++.++.||+... ...++.+|..+. .|+.-...... + ........++.++++|+... +
T Consensus 63 stPvv~~g~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d----- 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D----- 129 (527)
T ss_pred cCCEEECCEEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----
Confidence 445667899998643 236899998865 58754432100 0 00112234556788887432 1
Q ss_pred ceeEEEEcCCCe--EEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCC-CCcccEEEEeCCCC--ceEE
Q 020245 149 NDLWGFDVVDRK--WIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAG-VEVDDVHCFDPAHA--QWAQ 212 (329)
Q Consensus 149 ~~~~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~-~~~~~~~~~d~~~~--~w~~ 212 (329)
..++.+|.++.+ |+.-..... .......+.++.++.+|+-....+ .....++.||.++. .|+.
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEECCCCCEEeeccccccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 468999998874 765432210 011122333466787766422111 12357888887665 3554
No 120
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.43 E-value=24 Score=31.63 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=93.4
Q ss_pred ECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCC
Q 020245 29 VGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 29 ~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 108 (329)
.++.+++.|+-+ .-+-.+|..+.. .++...++-. .....++...++.|++.||++ ..+-.||..+
T Consensus 121 ~d~t~l~s~sDd-------~v~k~~d~s~a~-v~~~l~~htD-YVR~g~~~~~~~hivvtGsYD------g~vrl~DtR~ 185 (487)
T KOG0310|consen 121 QDNTMLVSGSDD-------KVVKYWDLSTAY-VQAELSGHTD-YVRCGDISPANDHIVVTGSYD------GKVRLWDTRS 185 (487)
T ss_pred cCCeEEEecCCC-------ceEEEEEcCCcE-EEEEecCCcc-eeEeeccccCCCeEEEecCCC------ceEEEEEecc
Confidence 578888888732 334455666554 2333332111 122233445577899999988 3566778776
Q ss_pred CcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEE-CCEEE
Q 020245 109 NQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVT-QGKIW 187 (329)
Q Consensus 109 ~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~l~ 187 (329)
.+ ..+-...+ -.|........-+..|...|| +.+-++|+.++.-. +..+. .+...-.++.+. ++.-.
T Consensus 186 ~~-~~v~elnh-g~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~ql-l~~~~--~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 186 LT-SRVVELNH-GCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGGQL-LTSMF--NHNKTVTCLRLASDSTRL 253 (487)
T ss_pred CC-ceeEEecC-CCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCcee-hhhhh--cccceEEEEEeecCCceE
Confidence 63 22222211 123333222233456777777 67888888765421 11111 012222233332 44566
Q ss_pred EEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCcc
Q 020245 188 VVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEV 242 (329)
Q Consensus 188 v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~ 242 (329)
+-||.+ ..+-.||. ..|+.+... .+|.|.... ++..++.-+++|..+
T Consensus 254 lS~sLD----~~VKVfd~--t~~Kvv~s~-~~~~pvLsi-avs~dd~t~viGmsn 300 (487)
T KOG0310|consen 254 LSGSLD----RHVKVFDT--TNYKVVHSW-KYPGPVLSI-AVSPDDQTVVIGMSN 300 (487)
T ss_pred eecccc----cceEEEEc--cceEEEEee-ecccceeeE-EecCCCceEEEeccc
Confidence 667765 46777884 456655543 444444322 223467888888753
No 121
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.07 E-value=21 Score=30.70 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=42.7
Q ss_pred CceEEEeCC-CCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCCCceEEEECCCCc--EEEcccCCCCCCC
Q 020245 48 NNLHVFDLE-TLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHKELNELYSFDTRTNQ--WTLLSNGDAGPPH 123 (329)
Q Consensus 48 ~~~~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~ 123 (329)
+.+..|+.. ..+++.+.... .+. ...+....- ++.+|+.. . ....+..||..+.. .+.+... +..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~-~~~-~p~~i~~~~~g~~l~v~~-~-----~~~~v~v~~~~~~g~~~~~~~~~---~~~ 125 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP-LPG-SPTHISTDHQGRFLFSAS-Y-----NANCVSVSPLDKDGIPVAPIQII---EGL 125 (330)
T ss_pred CcEEEEEECCCCceEEeeeec-CCC-CceEEEECCCCCEEEEEE-c-----CCCeEEEEEECCCCCCCCceeec---cCC
Confidence 567777765 34565444321 111 111222222 33576653 1 23567778775321 1122211 111
Q ss_pred cccceeEee-CC-eEEEEcccCCCcCcceeEEEEcCC
Q 020245 124 RSYHSTAAD-DR-HVYIFGGCGVSGRLNDLWGFDVVD 158 (329)
Q Consensus 124 r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~~~~~~ 158 (329)
..-|.+... ++ .+|+. .... +.+..||+.+
T Consensus 126 ~~~~~~~~~p~g~~l~v~-~~~~----~~v~v~d~~~ 157 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVP-CLKE----DRIRLFTLSD 157 (330)
T ss_pred CcccEeEeCCCCCEEEEe-eCCC----CEEEEEEECC
Confidence 122333333 33 55554 3222 5788998876
No 122
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.05 E-value=23 Score=31.17 Aligned_cols=210 Identities=17% Similarity=0.183 Sum_probs=97.2
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC--CEEEEEccccC------------------CCCCCCceEEEECC
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG--HTIYMFGGRDG------------------THKELNELYSFDTR 107 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~------------------~~~~~~~~~~~d~~ 107 (329)
..+.+.|+.+.+=+.+-. .|..-.+....+.+ +.. ++| ... .......+...|+.
T Consensus 102 ~~l~~vdL~T~e~~~vy~---~p~~~~g~gt~v~n~d~t~-~~g-~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYE---VPDDWKGYGTWVANSDCTK-LVG-IEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEEEEE-----TTEEEEEEEEE-TTSSE-EEE-EEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEEEEE---CCcccccccceeeCCCccE-EEE-EEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 568889988877665555 33433333322222 222 222 110 23455678888999
Q ss_pred CCcEEEcccCCCCCCCcccceeEe-eCCeEEEEcccCCCcCc-ceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCE
Q 020245 108 TNQWTLLSNGDAGPPHRSYHSTAA-DDRHVYIFGGCGVSGRL-NDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK 185 (329)
Q Consensus 108 ~~~W~~~~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 185 (329)
+++.+.+-... .-.+|.... .+..+.+|.-....... ..||..+.......++.... +.....|-....++.
T Consensus 177 tG~~~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~--~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 177 TGERKVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM--EGESVGHEFWVPDGS 250 (386)
T ss_dssp T--EEEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS
T ss_pred CCceeEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC--CCcccccccccCCCC
Confidence 88877665542 123444443 35567777554444433 48999998877777776553 334444555555665
Q ss_pred -EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeec--eeEEE
Q 020245 186 -IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAG--ELYSL 262 (329)
Q Consensus 186 -l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~--~~~~~ 262 (329)
|+..+...+..-.-+..+|+++..=+.+.. .+++.|-+...++.+++--|.+..-+....+...+.+ -++.+
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 333343333334568888998876555442 3457788888899998877754322110000011122 35567
Q ss_pred EcCCceeEeec
Q 020245 263 DTETLVWTRWD 273 (329)
Q Consensus 263 d~~~~~W~~~~ 273 (329)
+++...-..+.
T Consensus 326 ~~~~~~~~~l~ 336 (386)
T PF14583_consen 326 DVEAGRFRKLA 336 (386)
T ss_dssp ETTTTEEEEEE
T ss_pred ccccCceeeee
Confidence 88777655444
No 123
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=85.57 E-value=30 Score=31.93 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=41.7
Q ss_pred EEEC-CEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCC---CCCCc
Q 020245 27 TIVG-QKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTH---KELNE 100 (329)
Q Consensus 27 ~~~~-~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~ 100 (329)
++.+ ++||+... ...++.+|..+.+ |+.-......+......+.++.++.+|+ |...... .....
T Consensus 106 ~~~~~~~V~v~~~--------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~ 176 (488)
T cd00216 106 AYWDPRKVFFGTF--------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGA 176 (488)
T ss_pred EEccCCeEEEecC--------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcE
Confidence 3446 78887442 2578999988654 6643321100011122334555666665 4322111 23467
Q ss_pred eEEEECCCC--cEEEc
Q 020245 101 LYSFDTRTN--QWTLL 114 (329)
Q Consensus 101 ~~~~d~~~~--~W~~~ 114 (329)
++.+|..+. .|+.-
T Consensus 177 v~alD~~TG~~~W~~~ 192 (488)
T cd00216 177 LRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEEECCCCceeeEee
Confidence 899999865 58653
No 124
>PRK03629 tolB translocation protein TolB; Provisional
Probab=84.89 E-value=30 Score=31.31 Aligned_cols=149 Identities=9% Similarity=-0.056 Sum_probs=78.2
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
...++.+|..+++-+.+.... ... ......-++ +|++...... ...++.+|..+.+.+++.... . ...
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~---~~~-~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~---~-~~~ 290 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFP---RHN-GAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGR---S-NNT 290 (429)
T ss_pred CcEEEEEECCCCCeEEccCCC---CCc-CCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCC---C-CcC
Confidence 357899999887766665441 111 111222244 5555433221 146899999998887776542 1 111
Q ss_pred cEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECC-EEEEEcCccCCCCCCcCCCCee
Q 020245 177 PGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGK-HIVVYGGEVDPSDLGHLGAGKF 255 (329)
Q Consensus 177 ~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~~ 255 (329)
.....-+++.+++....+ ...++|.+|.++..-+.+...+ . ........-++ .|++......
T Consensus 291 ~~~wSPDG~~I~f~s~~~-g~~~Iy~~d~~~g~~~~lt~~~---~-~~~~~~~SpDG~~Ia~~~~~~g------------ 353 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQA-GRPQVYKVNINGGAPQRITWEG---S-QNQDADVSSDGKFMVMVSSNGG------------ 353 (429)
T ss_pred ceEECCCCCEEEEEeCCC-CCceEEEEECCCCCeEEeecCC---C-CccCEEECCCCCEEEEEEccCC------------
Confidence 112223455333332211 2357889998877766664321 1 11111222344 5544443211
Q ss_pred eceeEEEEcCCceeEeecC
Q 020245 256 AGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 256 ~~~~~~~d~~~~~W~~~~~ 274 (329)
...++.+|+++..++.+..
T Consensus 354 ~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 354 QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CceEEEEECCCCCeEEeCC
Confidence 2368899999888887764
No 125
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.77 E-value=43 Score=33.09 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=51.4
Q ss_pred CEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEe--eCCeEEEEcccCCCcCcceeEEEEcCCCe
Q 020245 83 HTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAA--DDRHVYIFGGCGVSGRLNDLWGFDVVDRK 160 (329)
Q Consensus 83 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 160 (329)
+.+++.|+.+ ..+..||..+.+-. .... .+...-.++.. .++.+++.|+.+ ..+..||+.+..
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~--~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLV--TEMK--EHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEE--EEec--CCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCc
Confidence 3455555544 46788888765422 1111 11111122222 245777777764 457888887654
Q ss_pred EE-EecCCCCCCCCCCCcEEEE---ECCEEEEEeeeCCCCcccEEEEeCCCC
Q 020245 161 WI-QYPSAGENCKGRGGPGLIV---TQGKIWVVYGFAGVEVDDVHCFDPAHA 208 (329)
Q Consensus 161 W~-~~~~~~~~~~~~~~~~~~~---~~~~l~v~gG~~~~~~~~~~~~d~~~~ 208 (329)
-. .+... ....++. .++.+++.|+.+ ..+..||..+.
T Consensus 610 ~~~~~~~~-------~~v~~v~~~~~~g~~latgs~d----g~I~iwD~~~~ 650 (793)
T PLN00181 610 SIGTIKTK-------ANICCVQFPSESGRSLAFGSAD----HKVYYYDLRNP 650 (793)
T ss_pred EEEEEecC-------CCeEEEEEeCCCCCEEEEEeCC----CeEEEEECCCC
Confidence 22 22111 1112222 246677777655 57888998654
No 126
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=83.93 E-value=22 Score=29.08 Aligned_cols=187 Identities=12% Similarity=0.125 Sum_probs=98.1
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCC----CCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEE
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLE----TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFD 105 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~----~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d 105 (329)
++++|+...... ..+..|... ...+...-. +|.+-.+-..++.++.+|.- ...++.+.+||
T Consensus 30 ~~r~~~~~~~~~------~~l~E~~~~~~~~~~~~~~~~~---lp~~~~gTg~VVynGs~yyn------k~~t~~ivky~ 94 (249)
T KOG3545|consen 30 DDRIYVMNYFDG------LMLTEYTNLEDFKRGRKAEKYR---LPYSWDGTGHVVYNGSLYYN------KAGTRNIIKYD 94 (249)
T ss_pred cCceEEeccccC------ceEEEeccHHHhhccCcceEEe---CCCCccccceEEEcceEEee------ccCCcceEEEE
Confidence 678888844322 455556542 233333222 66777788889999999884 45567899999
Q ss_pred CCCC---cEEEcccCCCC-C--CC---cccceeEeeCCeEEEEcccCCCcCcceeEEEEcCC----CeEEEecCCCCCCC
Q 020245 106 TRTN---QWTLLSNGDAG-P--PH---RSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVD----RKWIQYPSAGENCK 172 (329)
Q Consensus 106 ~~~~---~W~~~~~~~~~-p--~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~----~~W~~~~~~~~~~~ 172 (329)
+.+. .+..++.++.. + -. ....-+++.+.-++++=-..++...-.+.+.|+.+ .+|..-- .
T Consensus 95 l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~------~ 168 (249)
T KOG3545|consen 95 LETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTL------P 168 (249)
T ss_pred eecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeecccc------C
Confidence 9874 35555554311 1 11 11122233344555553322222222346666644 3453221 1
Q ss_pred CCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE---CCEEEEEc
Q 020245 173 GRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI---GKHIVVYG 239 (329)
Q Consensus 173 ~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~---~~~i~i~G 239 (329)
.+....+.++=+.+|++-........-.+.||..+++-+.+.. +.+.+-.+.+++-. +.+||+.-
T Consensus 169 k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i--pf~N~y~~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 169 KRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL--PFPNPYSYATMIDYNPRDRRLYAWD 236 (249)
T ss_pred CCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc--cccchhhhhhccCCCcccceeeEec
Confidence 2222333344466888766554422333788887776654432 33333334444433 45888874
No 127
>PRK02889 tolB translocation protein TolB; Provisional
Probab=82.63 E-value=37 Score=30.66 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=75.3
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
...++.+|..+.+=..+... +. ........-++ +|++....+. ...+|.+|..+...+++.... ....
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~---~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~----~~~~ 287 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANF---KG-SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSS----GIDT 287 (427)
T ss_pred CcEEEEEECCCCCEEEeecC---CC-CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCCC----CCCc
Confidence 35699999988765555433 11 11122222244 5554433222 267899998887766665431 1111
Q ss_pred cEEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECC-EEEEEcCccCCCCCCcCCCCe
Q 020245 177 PGLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGK-HIVVYGGEVDPSDLGHLGAGK 254 (329)
Q Consensus 177 ~~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~ 254 (329)
.....-+++ |+...... ....+|.++......+.+...+ .........-++ .|+.......
T Consensus 288 ~~~wSpDG~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g----------- 350 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRG--GAPQIYRMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRVGG----------- 350 (427)
T ss_pred CeEEcCCCCEEEEEecCC--CCcEEEEEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEccCC-----------
Confidence 222333554 44332211 2257888888777776665321 111111222244 4544332110
Q ss_pred eeceeEEEEcCCceeEeecC
Q 020245 255 FAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 255 ~~~~~~~~d~~~~~W~~~~~ 274 (329)
...++.+|+.+...+.+..
T Consensus 351 -~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 351 -AFKLYVQDLATGQVTALTD 369 (427)
T ss_pred -cEEEEEEECCCCCeEEccC
Confidence 1368899998887776653
No 128
>PRK04043 tolB translocation protein TolB; Provisional
Probab=81.41 E-value=41 Score=30.35 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=84.4
Q ss_pred CceEEEECCCCcEEEcccCCCCCCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCc
Q 020245 99 NELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGP 177 (329)
Q Consensus 99 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 177 (329)
.++|.+|+.+++=+.+...+ . ........-++ +|++.-.... ..+++.+|..+..+++++..+ . ....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~---g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~---~-~d~~ 281 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ---G-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYP---G-IDVN 281 (419)
T ss_pred CEEEEEECCCCcEEEEecCC---C-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCC---C-ccCc
Confidence 48999999887766665431 1 11111222344 5555433222 368999999999999887653 1 1111
Q ss_pred EEEEECC-EEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECC-EEEEEcCccCCCCCCcCCCCee
Q 020245 178 GLIVTQG-KIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGK-HIVVYGGEVDPSDLGHLGAGKF 255 (329)
Q Consensus 178 ~~~~~~~-~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~~ 255 (329)
....-++ +|++..... ...+++.+|.++.+.+++...+ . ... ...-++ .|......... . ....
T Consensus 282 p~~SPDG~~I~F~Sdr~--g~~~Iy~~dl~~g~~~rlt~~g---~--~~~-~~SPDG~~Ia~~~~~~~~-~-----~~~~ 347 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRL--GYPNIFMKKLNSGSVEQVVFHG---K--NNS-SVSTYKNYIVYSSRETNN-E-----FGKN 347 (419)
T ss_pred cEECCCCCEEEEEECCC--CCceEEEEECCCCCeEeCccCC---C--cCc-eECCCCCEEEEEEcCCCc-c-----cCCC
Confidence 1222344 566654332 2368999999988887776422 1 122 223344 55444432111 0 0001
Q ss_pred eceeEEEEcCCceeEeecC
Q 020245 256 AGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 256 ~~~~~~~d~~~~~W~~~~~ 274 (329)
..+++.+|+++..++.+..
T Consensus 348 ~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 348 TFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CcEEEEEECCCCCeEECCC
Confidence 3579999999998888875
No 129
>smart00284 OLF Olfactomedin-like domains.
Probab=81.15 E-value=30 Score=28.66 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=97.4
Q ss_pred CCEEEEEccccCCCCCCCceEEEEC----CCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcC
Q 020245 82 GHTIYMFGGRDGTHKELNELYSFDT----RTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVV 157 (329)
Q Consensus 82 ~~~iyv~GG~~~~~~~~~~~~~~d~----~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 157 (329)
++++|++.+.. ...+.+..|.. ...+..+.-.+ |.+-.+...++.++.+|.--.. ...+.+||+.
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~~L---p~~~~GtG~VVYngslYY~~~~-----s~~iiKydL~ 102 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDHPL---PHAGQGTGVVVYNGSLYFNKFN-----SHDICRFDLT 102 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEEEC---CCccccccEEEECceEEEEecC-----CccEEEEECC
Confidence 46788876543 12345666642 23333222222 5666777788889999885332 3679999999
Q ss_pred CCeEEEecCCCCC------CC---CCCCcEEEEECCEEEEEeeeCCC-CcccEEEEeCCCCceEEeeccCCCCCCcceeE
Q 020245 158 DRKWIQYPSAGEN------CK---GRGGPGLIVTQGKIWVVYGFAGV-EVDDVHCFDPAHAQWAQVETSGEKPTARSVFS 227 (329)
Q Consensus 158 ~~~W~~~~~~~~~------~~---~~~~~~~~~~~~~l~v~gG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~ 227 (329)
+++-.....++.. +- +-...-.++-++-|+|+=...+. ..-.+-++|+.+-+..+.-.. ..+.+... -
T Consensus 103 t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~-n 180 (255)
T smart00284 103 TETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT-TYNKRSAS-N 180 (255)
T ss_pred CCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc-CCCccccc-c
Confidence 9987655544211 11 11112233444557776433222 223344666655444333321 22232222 2
Q ss_pred EEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCc-ceEEEE
Q 020245 228 TVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGK-HGLLVY 304 (329)
Q Consensus 228 ~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~-~~i~i~ 304 (329)
+.++=+.||++-..... ...=.+.||+.+.+-..+. +|.+.....++++-++-+ +.||+.
T Consensus 181 aFmvCGvLY~~~s~~~~----------~~~I~yayDt~t~~~~~~~-------i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 181 AFMICGILYVTRSLGSK----------GEKVFYAYDTNTGKEGHLD-------IPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred cEEEeeEEEEEccCCCC----------CcEEEEEEECCCCccceee-------eeeccccccceeceeCCCCCeEEEE
Confidence 44555678887431111 1223688999877644433 243333322555554432 447764
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=80.43 E-value=45 Score=30.28 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=49.8
Q ss_pred eeEEEEcCCC----eEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcce
Q 020245 150 DLWGFDVVDR----KWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSV 225 (329)
Q Consensus 150 ~~~~~~~~~~----~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~ 225 (329)
.+-.||.... .|.+.... +..+.+++-.+..|++.-|++ .+++.||+....-...-.- +.|
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsA-----P~~gicfspsne~l~vsVG~D----kki~~yD~~s~~s~~~l~y-~~P----- 252 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSA-----PCRGICFSPSNEALLVSVGYD----KKINIYDIRSQASTDRLTY-SHP----- 252 (673)
T ss_pred eEEEEeccCCCcccchhhhccC-----CcCcceecCCccceEEEeccc----ceEEEeecccccccceeee-cCC-----
Confidence 3455555443 34444433 344556666788888888877 6899999875433222111 111
Q ss_pred eEEEEE--CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCc
Q 020245 226 FSTVGI--GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETL 267 (329)
Q Consensus 226 ~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~ 267 (329)
.+.+.+ ++.++++|-. ...++.||+...
T Consensus 253 lstvaf~~~G~~L~aG~s--------------~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 253 LSTVAFSECGTYLCAGNS--------------KGELIAYDMRST 282 (673)
T ss_pred cceeeecCCceEEEeecC--------------CceEEEEecccC
Confidence 233333 4466666643 346888887643
No 131
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=79.40 E-value=41 Score=29.16 Aligned_cols=123 Identities=16% Similarity=0.091 Sum_probs=64.0
Q ss_pred CEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccC---CCCCCCceEEEEC
Q 020245 31 QKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDG---THKELNELYSFDT 106 (329)
Q Consensus 31 ~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~---~~~~~~~~~~~d~ 106 (329)
+++||.--.... ....++++|..+++-.-+... .-..+.+.+- +..+|+..-+-. -....+-+..||.
T Consensus 3 ~rvyV~D~~~~~---~~~rv~viD~d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~ 74 (342)
T PF06433_consen 3 HRVYVQDPVFFH---MTSRVYVIDADSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT 74 (342)
T ss_dssp TEEEEEE-GGGG---SSEEEEEEETTTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET
T ss_pred cEEEEECCcccc---ccceEEEEECCCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEec
Confidence 577886542221 125799999988876544432 2222322222 346777654321 2344567889999
Q ss_pred CCCcEEEcccCCCCCCCcccc------eeEee-CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCC
Q 020245 107 RTNQWTLLSNGDAGPPHRSYH------STAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSA 167 (329)
Q Consensus 107 ~~~~W~~~~~~~~~p~~r~~~------~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~ 167 (329)
.|.+-+.--..+ +.+|... ....- +..+||+ - -.+..++-+.|+..++....-+.
T Consensus 75 ~TL~~~~EI~iP--~k~R~~~~~~~~~~~ls~dgk~~~V~-N---~TPa~SVtVVDl~~~kvv~ei~~ 136 (342)
T PF06433_consen 75 QTLSPTGEIEIP--PKPRAQVVPYKNMFALSADGKFLYVQ-N---FTPATSVTVVDLAAKKVVGEIDT 136 (342)
T ss_dssp TTTEEEEEEEET--TS-B--BS--GGGEEE-TTSSEEEEE-E---ESSSEEEEEEETTTTEEEEEEEG
T ss_pred CcCcccceEecC--CcchheecccccceEEccCCcEEEEE-c---cCCCCeEEEEECCCCceeeeecC
Confidence 988543211121 1223321 12222 3455554 1 23457889999999887655444
No 132
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.05 E-value=49 Score=29.86 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=74.1
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEE-ECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSY 126 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~ 126 (329)
..++.+|+.+.+-+.+... +... ...... .+++|++.... ....++|.+|..+...+++.... .....
T Consensus 220 ~~I~~~dl~~g~~~~l~~~---~g~~-~~~~~SPDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~lt~~~---~~~~~ 288 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF---KGSN-SAPAWSPDGRTLAVALSR----DGNSQIYTVNADGSGLRRLTQSS---GIDTE 288 (427)
T ss_pred cEEEEEECCCCCEEEeecC---CCCc-cceEECCCCCEEEEEEcc----CCCceEEEEECCCCCcEECCCCC---CCCcC
Confidence 5699999987765555431 1111 111222 23455543322 23468999998877766654321 11111
Q ss_pred ceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeC
Q 020245 127 HSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDP 205 (329)
Q Consensus 127 ~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~ 205 (329)
. ...-++ +|++...... ...++.++..+...+.+.... .........-+++.+++....+. ...++.+|.
T Consensus 289 ~-~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g-~~~I~v~d~ 359 (427)
T PRK02889 289 P-FFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRVGG-AFKLYVQDL 359 (427)
T ss_pred e-EEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEccCC-cEEEEEEEC
Confidence 1 222344 4544332211 256888888887777665321 11111222234543333322211 237889999
Q ss_pred CCCceEEee
Q 020245 206 AHAQWAQVE 214 (329)
Q Consensus 206 ~~~~w~~~~ 214 (329)
.+.+.+.+.
T Consensus 360 ~~g~~~~lt 368 (427)
T PRK02889 360 ATGQVTALT 368 (427)
T ss_pred CCCCeEEcc
Confidence 888777665
No 133
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.89 E-value=34 Score=27.89 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=62.2
Q ss_pred CceEEEeCCCCcEE-EEeeCCCCCCCCcceeEEEECC--EEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCc
Q 020245 48 NNLHVFDLETLTWS-VADVTGDVPPPRVGVTMAAVGH--TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHR 124 (329)
Q Consensus 48 ~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r 124 (329)
..+..||..+.+-. +... ....--.+.+|+ .+.+-|+.+ ..+-.||..++..+.+... -..+
T Consensus 81 k~v~vwDV~TGkv~Rr~rg------H~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQil---dea~ 145 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRG------HLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQIL---DEAK 145 (307)
T ss_pred ceEEEEEcccCeeeeeccc------ccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchh---hhhc
Confidence 67888998877532 1111 111122345554 466666555 6788899999888877766 4668
Q ss_pred ccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe
Q 020245 125 SYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK 160 (329)
Q Consensus 125 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 160 (329)
.+..++.+.+...|.|-.+ ..+-.||+..++
T Consensus 146 D~V~Si~v~~heIvaGS~D-----GtvRtydiR~G~ 176 (307)
T KOG0316|consen 146 DGVSSIDVAEHEIVAGSVD-----GTVRTYDIRKGT 176 (307)
T ss_pred CceeEEEecccEEEeeccC-----CcEEEEEeecce
Confidence 8888888888887776655 357788888765
No 134
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.31 E-value=33 Score=31.72 Aligned_cols=127 Identities=13% Similarity=0.139 Sum_probs=72.2
Q ss_pred CCCCcceeEEEE--CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEEC--CEEEEEccccC
Q 020245 18 PGARSSHAITIV--GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVG--HTIYMFGGRDG 93 (329)
Q Consensus 18 p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~ 93 (329)
-.|+.+..+++. .-.||+.|-. .+||++++..++|...-... .+- --++.++ +.|+.+||.+
T Consensus 131 RIP~~GRDm~y~~~scDly~~gsg--------~evYRlNLEqGrfL~P~~~~---~~~--lN~v~in~~hgLla~Gt~~- 196 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGSG--------SEVYRLNLEQGRFLNPFETD---SGE--LNVVSINEEHGLLACGTED- 196 (703)
T ss_pred ecCcCCccccccCCCccEEEeecC--------cceEEEEccccccccccccc---ccc--ceeeeecCccceEEecccC-
Confidence 457777777764 3367776642 78999999999986433221 122 2233443 4688888866
Q ss_pred CCCCCCceEEEECCCCc-EEEcccCC---CCCCCccc--ceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecC
Q 020245 94 THKELNELYSFDTRTNQ-WTLLSNGD---AGPPHRSY--HSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPS 166 (329)
Q Consensus 94 ~~~~~~~~~~~d~~~~~-W~~~~~~~---~~p~~r~~--~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~ 166 (329)
..|+.+|+.+.. -..+.... .-|..-.. .++..+ ++-|-+.-|... ..++.||+.+.+-..++.
T Consensus 197 -----g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 197 -----GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----GSVLIYDLRASKPLLVKD 267 (703)
T ss_pred -----ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----CcEEEEEcccCCceeecc
Confidence 468888887653 12221111 11222111 222333 446666556433 578999999877555444
Q ss_pred C
Q 020245 167 A 167 (329)
Q Consensus 167 ~ 167 (329)
.
T Consensus 268 h 268 (703)
T KOG2321|consen 268 H 268 (703)
T ss_pred c
Confidence 3
No 135
>PRK01742 tolB translocation protein TolB; Provisional
Probab=77.12 E-value=56 Score=29.50 Aligned_cols=161 Identities=12% Similarity=0.150 Sum_probs=77.6
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECC-EEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGH-TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSY 126 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~ 126 (329)
..++.+|+.+.+-+.+... +.. .......-++ +|++..... ...++|.+|..+....++... .....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~---~g~-~~~~~wSPDG~~La~~~~~~----g~~~Iy~~d~~~~~~~~lt~~---~~~~~- 295 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASF---RGH-NGAPAFSPDGSRLAFASSKD----GVLNIYVMGANGGTPSQLTSG---AGNNT- 295 (429)
T ss_pred cEEEEEeCCCCceEEEecC---CCc-cCceeECCCCCEEEEEEecC----CcEEEEEEECCCCCeEeeccC---CCCcC-
Confidence 4688899887765555432 111 1112222234 454433212 224688999988777666443 11111
Q ss_pred ceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCE-EEEEeeeCCCCcccEEEEe
Q 020245 127 HSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK-IWVVYGFAGVEVDDVHCFD 204 (329)
Q Consensus 127 ~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-l~v~gG~~~~~~~~~~~~d 204 (329)
.....-++ +|++...... ...++.++..+..-..+.. .. +. ....-+++ +++.++ ..++.+|
T Consensus 296 ~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~-----~~-~~-~~~SpDG~~ia~~~~------~~i~~~D 359 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG-----RG-YS-AQISADGKTLVMING------DNVVKQD 359 (429)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC-----CC-CC-ccCCCCCCEEEEEcC------CCEEEEE
Confidence 12222344 4554433222 2467777776654443321 11 11 12223444 444432 4677899
Q ss_pred CCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCc
Q 020245 205 PAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGE 241 (329)
Q Consensus 205 ~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~ 241 (329)
..+.+++.+... . ........-++++++++..
T Consensus 360 l~~g~~~~lt~~--~---~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 360 LTSGSTEVLSST--F---LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCCCCeEEecCC--C---CCCCceECCCCCEEEEEEc
Confidence 988888766421 1 1111122335666666653
No 136
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=76.80 E-value=53 Score=29.01 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=58.9
Q ss_pred ceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCC--CCCCC--c
Q 020245 49 NLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGD--AGPPH--R 124 (329)
Q Consensus 49 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~--~~p~~--r 124 (329)
++..+. .+.|+.++. .......++.+++++|++.- ...++.++..- +-.++.+.- ..... +
T Consensus 183 ~l~~w~--~~~Wt~l~~-----~~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~ 247 (373)
T PLN03215 183 KINYWD--GNVLKALKQ-----MGYHFSDIIVHKGQTYALDS-------IGIVYWINSDL-EFSRFGTSLDENITDGCWT 247 (373)
T ss_pred cEeeec--CCeeeEccC-----CCceeeEEEEECCEEEEEcC-------CCeEEEEecCC-ceeeecceecccccCCccc
Confidence 343344 478998864 23345668899999999832 23566666331 112222210 00001 1
Q ss_pred ccceeEeeCCeEEEEcccCCCc--------------CcceeEEEEcCCCeEEEecCCC
Q 020245 125 SYHSTAADDRHVYIFGGCGVSG--------------RLNDLWGFDVVDRKWIQYPSAG 168 (329)
Q Consensus 125 ~~~~~~~~~~~i~v~GG~~~~~--------------~~~~~~~~~~~~~~W~~~~~~~ 168 (329)
...-.+...|+++++....... ..-.+++.|.+..+|.++..++
T Consensus 248 ~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 248 GDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 1233455667888887742210 1134566688889999999885
No 137
>PLN00181 protein SPA1-RELATED; Provisional
Probab=76.30 E-value=84 Score=31.10 Aligned_cols=99 Identities=9% Similarity=0.131 Sum_probs=50.6
Q ss_pred CCEEEEEccccCCCCCCCceEEEECCCCcE-EEcccCCCCCCCcccceeEe---eCCeEEEEcccCCCcCcceeEEEEcC
Q 020245 82 GHTIYMFGGRDGTHKELNELYSFDTRTNQW-TLLSNGDAGPPHRSYHSTAA---DDRHVYIFGGCGVSGRLNDLWGFDVV 157 (329)
Q Consensus 82 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~---~~~~i~v~GG~~~~~~~~~~~~~~~~ 157 (329)
++.+++.||.+ ..+..||..+..- ..+... ....++. .++.+++.|+.+ ..+..||+.
T Consensus 587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~~-------~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDD------GSVKLWSINQGVSIGTIKTK-------ANICCVQFPSESGRSLAFGSAD-----HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEEEEEecC-------CCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECC
Confidence 45677777655 4688888876432 222111 1111121 246777777754 468889987
Q ss_pred CCe--EEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCC
Q 020245 158 DRK--WIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAH 207 (329)
Q Consensus 158 ~~~--W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~ 207 (329)
+.. ...+.. ....-..+...++..++.++.+ ..+..||+..
T Consensus 649 ~~~~~~~~~~~-----h~~~V~~v~f~~~~~lvs~s~D----~~ikiWd~~~ 691 (793)
T PLN00181 649 NPKLPLCTMIG-----HSKTVSYVRFVDSSTLVSSSTD----NTLKLWDLSM 691 (793)
T ss_pred CCCccceEecC-----CCCCEEEEEEeCCCEEEEEECC----CEEEEEeCCC
Confidence 643 111111 1111122233456666777654 3566677643
No 138
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=76.17 E-value=36 Score=31.51 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=58.5
Q ss_pred ECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEE
Q 020245 182 TQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYS 261 (329)
Q Consensus 182 ~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 261 (329)
..-.||+.|-. .++|+++++.+.|-..-. ...+-..+..+---+.|+.+|+. ...|..
T Consensus 144 ~scDly~~gsg-----~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~~hgLla~Gt~--------------~g~VEf 201 (703)
T KOG2321|consen 144 PSCDLYLVGSG-----SEVYRLNLEQGRFLNPFE---TDSGELNVVSINEEHGLLACGTE--------------DGVVEF 201 (703)
T ss_pred CCccEEEeecC-----cceEEEEccccccccccc---cccccceeeeecCccceEEeccc--------------CceEEE
Confidence 34568887633 699999999998843221 11122222222223478888885 357888
Q ss_pred EEcCCce-eEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccC
Q 020245 262 LDTETLV-WTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLD 325 (329)
Q Consensus 262 ~d~~~~~-W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~ 325 (329)
+|+.... -..+.....-...|..-...+.+++-..+ +-|-+-=| .....|++||++..
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVG-----ts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVG-----TSTGSVLIYDLRAS 260 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEee-----ccCCcEEEEEcccC
Confidence 9987653 12222200000122221111134444444 23444333 23347888888764
No 139
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=75.71 E-value=43 Score=27.45 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=54.6
Q ss_pred CcEEEcccCC--CCCCCcccceeEe-eCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEEC-C
Q 020245 109 NQWTLLSNGD--AGPPHRSYHSTAA-DDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQ-G 184 (329)
Q Consensus 109 ~~W~~~~~~~--~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~ 184 (329)
..|+...++. ..+.|--...... .++.|+..||- ..++..|+++++.+..-.. ..-+-|+++.-+ +
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~rG----HtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYRG----HTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEcC----CcceeeeeeecccC
Confidence 3577666662 2334444444433 57889999884 4689999999998766543 445666666422 2
Q ss_pred EEEEEeeeCCCCcccEEEEeCCCCceEEe
Q 020245 185 KIWVVYGFAGVEVDDVHCFDPAHAQWAQV 213 (329)
Q Consensus 185 ~l~v~gG~~~~~~~~~~~~d~~~~~w~~~ 213 (329)
.-++.|+-+ ..+-.+|.++.+-.++
T Consensus 169 ~qilsG~ED----GtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 169 GQILSGAED----GTVRVWDTKTQKHVSM 193 (325)
T ss_pred cceeecCCC----ccEEEEeccccceeEE
Confidence 234445544 3556677777665443
No 140
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=74.73 E-value=56 Score=28.26 Aligned_cols=99 Identities=9% Similarity=0.110 Sum_probs=57.6
Q ss_pred cccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEE
Q 020245 124 RSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCF 203 (329)
Q Consensus 124 r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~ 203 (329)
|+..-++.+++++.|- ...+ .++-.+++.|......-.. -+.+.++..+++++.|-|..+ +.+-.+
T Consensus 320 rAaVNvVdfd~kyIVs-ASgD----RTikvW~~st~efvRtl~g-----HkRGIAClQYr~rlvVSGSSD----ntIRlw 385 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVS-ASGD----RTIKVWSTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSD----NTIRLW 385 (499)
T ss_pred hhheeeeccccceEEE-ecCC----ceEEEEeccceeeehhhhc-----ccccceehhccCeEEEecCCC----ceEEEE
Confidence 3333344456664333 2211 5677788887765544432 345667778899998887644 567777
Q ss_pred eCCCCceEEeeccCCCCCCc-ceeEEEEECCEEEEEcCcc
Q 020245 204 DPAHAQWAQVETSGEKPTAR-SVFSTVGIGKHIVVYGGEV 242 (329)
Q Consensus 204 d~~~~~w~~~~~~~~~p~~r-~~~~~~~~~~~i~i~GG~~ 242 (329)
|++.+..-.+- .+. .-.-++.++++-++-|+++
T Consensus 386 di~~G~cLRvL------eGHEeLvRciRFd~krIVSGaYD 419 (499)
T KOG0281|consen 386 DIECGACLRVL------EGHEELVRCIRFDNKRIVSGAYD 419 (499)
T ss_pred eccccHHHHHH------hchHHhhhheeecCceeeecccc
Confidence 77655432221 111 1113667888888889864
No 141
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.20 E-value=47 Score=27.13 Aligned_cols=134 Identities=11% Similarity=0.081 Sum_probs=76.5
Q ss_pred CceEEEeCCCCcEEE-EeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEE-cccCCCCCCCcc
Q 020245 48 NNLHVFDLETLTWSV-ADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTL-LSNGDAGPPHRS 125 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~p~~r~ 125 (329)
..+-.++|....--. -...+ .... -+..+.+|.-|.-||-+ +.+..||..|++-.+ +..- .+
T Consensus 39 rtvrLWNp~rg~liktYsghG---~EVl-D~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr~rgH----~a-- 102 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHG---HEVL-DAALSSDNSKFASCGGD------KAVQVWDVNTGKVDRRFRGH----LA-- 102 (307)
T ss_pred ceEEeecccccceeeeecCCC---ceee-eccccccccccccCCCC------ceEEEEEcccCeeeeecccc----cc--
Confidence 556677877554211 11111 1111 12233455555555544 478999999875322 1111 00
Q ss_pred cceeEee--CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEE
Q 020245 126 YHSTAAD--DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCF 203 (329)
Q Consensus 126 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~ 203 (329)
..-.+.+ +..+.+-|+.+ .++..||-.+.+.+.+..+. ..+..-..+.+.+..+|.|..+ ..+-.|
T Consensus 103 qVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQild---ea~D~V~Si~v~~heIvaGS~D----GtvRty 170 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILD---EAKDGVSSIDVAEHEIVAGSVD----GTVRTY 170 (307)
T ss_pred eeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhh---hhcCceeEEEecccEEEeeccC----CcEEEE
Confidence 1111222 23566666654 56889999999888888773 5666667777788888877655 467788
Q ss_pred eCCCCc
Q 020245 204 DPAHAQ 209 (329)
Q Consensus 204 d~~~~~ 209 (329)
|+...+
T Consensus 171 diR~G~ 176 (307)
T KOG0316|consen 171 DIRKGT 176 (307)
T ss_pred Eeecce
Confidence 886553
No 142
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=73.31 E-value=64 Score=28.31 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=65.1
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccC---CCCCCCceEEEEC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDG---THKELNELYSFDT 106 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~~d~ 106 (329)
..++|+.-..... ..+.+.++|..+.+-......+. .|| ..+...+..||+.-.+-. .....+.+..||+
T Consensus 12 ~~~v~V~d~~~~~---~~~~v~ViD~~~~~v~g~i~~G~--~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 12 ARRVYVLDPGHFA---ATTQVYTIDGEAGRVLGMTDGGF--LPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred CCEEEEECCcccc---cCceEEEEECCCCEEEEEEEccC--CCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 3467776653211 12789999998766543333322 233 233334567999876321 2335678999999
Q ss_pred CCCcEEEcccCCCCCCCccc------ceeEeeCC-eEEEEcccCCCcCcceeEEEEcCCCeEEE
Q 020245 107 RTNQWTLLSNGDAGPPHRSY------HSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVDRKWIQ 163 (329)
Q Consensus 107 ~~~~W~~~~~~~~~p~~r~~------~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~~W~~ 163 (329)
.+.+-..--+.+ +.||.. .....-++ .+||. ..+ ..+.+-+.|..+++-..
T Consensus 85 ~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~---p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 85 QTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFY-QFS---PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred ccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEe-cCC---CCCEEEEEECCCCcEEE
Confidence 998754322222 233311 12222244 56665 222 23567777777776544
No 143
>PRK02888 nitrous-oxide reductase; Validated
Probab=72.51 E-value=90 Score=29.68 Aligned_cols=54 Identities=9% Similarity=-0.053 Sum_probs=37.1
Q ss_pred ceeEEEEcCC---ceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEeccc
Q 020245 257 GELYSLDTET---LVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCL 324 (329)
Q Consensus 257 ~~~~~~d~~~---~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~ 324 (329)
+.|-.+|..+ ..+..+.. .|.++.- |++.+-.+.+.+|+-|+.+ ++|-++|.++
T Consensus 296 n~V~VID~~t~~~~~~~v~~y------IPVGKsP--HGV~vSPDGkylyVanklS------~tVSVIDv~k 352 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRY------VPVPKNP--HGVNTSPDGKYFIANGKLS------PTVTVIDVRK 352 (635)
T ss_pred CEEEEEECCccccCCcceEEE------EECCCCc--cceEECCCCCEEEEeCCCC------CcEEEEEChh
Confidence 3678888876 13555555 6788887 7777777656677777654 4777777765
No 144
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=71.92 E-value=59 Score=27.32 Aligned_cols=120 Identities=17% Similarity=0.203 Sum_probs=73.0
Q ss_pred ceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEE-ECCEEEEEccccCCCCCCCce
Q 020245 23 SHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHTIYMFGGRDGTHKELNEL 101 (329)
Q Consensus 23 ~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 101 (329)
.-+.+...++.+++|+. ..+..-|-..+.|.+.... ..|+.+..+. .+.+-++.| .-+.+
T Consensus 47 ~ia~~~~g~~gwlVg~r--------gtiletdd~g~tw~qal~~----~gr~~f~sv~f~~~egw~vG-------e~sql 107 (339)
T COG4447 47 DIAFTESGSHGWLVGGR--------GTILETDDGGITWAQALDF----LGRHAFHSVSFLGMEGWIVG-------EPSQL 107 (339)
T ss_pred ceeEeecCcceEEEcCc--------ceEEEecCCcccchhhhch----hhhhheeeeeeecccccccC-------CcceE
Confidence 33444457899999986 4566777778889876653 3354444443 444455554 23456
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCC
Q 020245 102 YSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAG 168 (329)
Q Consensus 102 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~ 168 (329)
+.-+-...+|.+++.....|.+- ....+.-+.+-+++|-+ ..++.-+.--+.|+.+.+..
T Consensus 108 l~T~DgGqsWARi~~~e~~eg~~-~sI~f~d~q~g~m~gd~------Gail~T~DgGk~Wk~l~e~~ 167 (339)
T COG4447 108 LHTTDGGQSWARIPLSEKLEGFP-DSITFLDDQRGEMLGDQ------GAILKTTDGGKNWKALVEKA 167 (339)
T ss_pred EEecCCCcchhhchhhcCCCCCc-ceeEEecchhhhhhccc------ceEEEecCCcccHhHhcccc
Confidence 66666778999887764322222 22222234566676653 35666666777899888764
No 145
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=70.69 E-value=1.3e+02 Score=30.92 Aligned_cols=254 Identities=13% Similarity=0.105 Sum_probs=124.3
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCC--C-----CCCC--cceeEEEE--CCEEEEEccccCCCCCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGD--V-----PPPR--VGVTMAAV--GHTIYMFGGRDGTHKEL 98 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~--~-----p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~ 98 (329)
++.|||.--. .+.|.++|+....-..+...+. . ...+ .-+.++.. ++.|||.-. ..
T Consensus 579 ~g~lyVaDs~-------n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt------~n 645 (1057)
T PLN02919 579 NNRLFISDSN-------HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT------EN 645 (1057)
T ss_pred CCeEEEEECC-------CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC------CC
Confidence 5688886531 2678899987543333332110 0 0011 11333333 457888632 23
Q ss_pred CceEEEECCCCcEEEcccCCCCC----C--------CcccceeEee--CCeEEEEcccCCCcCcceeEEEEcCCCeEEEe
Q 020245 99 NELYSFDTRTNQWTLLSNGDAGP----P--------HRSYHSTAAD--DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQY 164 (329)
Q Consensus 99 ~~~~~~d~~~~~W~~~~~~~~~p----~--------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~ 164 (329)
..+.++|+.++.-+.+...+... . -..-..++.. ++.+||.... .+.+++||+.+.....+
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEE
Confidence 57888998887665553321000 0 0111122322 5788887432 25688999887765544
Q ss_pred cCCCCC-------C---CCCCCcEEEEE-C-CEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCC-CCC----------
Q 020245 165 PSAGEN-------C---KGRGGPGLIVT-Q-GKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGE-KPT---------- 221 (329)
Q Consensus 165 ~~~~~~-------~---~~~~~~~~~~~-~-~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~-~p~---------- 221 (329)
...... . ....-..++.. + +.|||....+ +.+.+||+.+...+.+..... .+.
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC----CeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 321100 0 00111122332 3 3588876533 689999987765433221000 000
Q ss_pred ------CcceeEEEE-ECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCC----CCCCCCCccee
Q 020245 222 ------ARSVFSTVG-IGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSD----HHPGPRGWCAF 290 (329)
Q Consensus 222 ------~r~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~----~~p~~r~~~~~ 290 (329)
.....+++. -++.|||.... .+.|.++|+++.....+......+ .........-.
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~--------------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSY--------------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECC--------------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 001123322 25578887653 357999999888776665311000 00111111113
Q ss_pred cccccCCcceEEEEcCCCCCCCcccceEEEecccCC
Q 020245 291 AGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDG 326 (329)
Q Consensus 291 ~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~ 326 (329)
++++..+ +.+||.-..+ +.|.++|+++.+
T Consensus 863 GIavd~d-G~lyVaDt~N------n~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGEN-GRLFVADTNN------SLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeCC-CCEEEEECCC------CEEEEEECCCCc
Confidence 3344333 5588876543 367777776654
No 146
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.16 E-value=60 Score=26.68 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=32.5
Q ss_pred EEeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCc-eeEeecC
Q 020245 202 CFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETL-VWTRWDD 274 (329)
Q Consensus 202 ~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~ 274 (329)
.-+.+.+.|+.-.. .+.|.+....+-...++.|-+-|| .+.+..+....+ +|.++..
T Consensus 239 t~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~G---------------dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGG---------------DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EecCccCccccccc-ccCCcceEEEEEeccccEEEEecC---------------CcEEEEEEeCCCCcEEEccc
Confidence 34455677865432 144555554444444556666666 256667766644 8998874
No 147
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=69.74 E-value=63 Score=26.77 Aligned_cols=157 Identities=12% Similarity=0.075 Sum_probs=83.1
Q ss_pred CCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEE-E--EeeCCCC---CCCC---cceeEEEECCEEEE
Q 020245 17 GPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWS-V--ADVTGDV---PPPR---VGVTMAAVGHTIYM 87 (329)
Q Consensus 17 ~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~-~--~~~~~~~---p~~r---~~~~~~~~~~~iyv 87 (329)
+|-+-.+...+++++.+|.--. .++.+.+||+.+.+-. + ++..... |... ...-.++.++-|++
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWv 137 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWV 137 (250)
T ss_pred EeceeccCCeEEECCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEE
Confidence 4556667777778887777543 1378999999987755 3 3222111 1111 11234455555666
Q ss_pred EccccCCCCCCCceEEEECCCC----cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEE
Q 020245 88 FGGRDGTHKELNELYSFDTRTN----QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQ 163 (329)
Q Consensus 88 ~GG~~~~~~~~~~~~~~d~~~~----~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~ 163 (329)
+=... .....=.+-+.|+.+- +|..- . +.+..+. ++.+=|.||++....... ..-.+.||+.+++=..
T Consensus 138 IYat~-~~~g~ivvskld~~tL~v~~tw~T~--~---~k~~~~n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 138 IYATE-DNNGNIVVSKLDPETLSVEQTWNTS--Y---PKRSAGN-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEED 209 (250)
T ss_pred EEecC-CCCCcEEEEeeCcccCceEEEEEec--c---Cchhhcc-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceec
Confidence 63332 1111223455666543 45431 1 2333333 333445788886654433 4567899999887654
Q ss_pred ecCCCCCCCCCCCcEEEEE---CCEEEEEe
Q 020245 164 YPSAGENCKGRGGPGLIVT---QGKIWVVY 190 (329)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~---~~~l~v~g 190 (329)
+...- +.+-..+++... +.+||+.-
T Consensus 210 ~~i~f--~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 210 VSIPF--PNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eeeee--ccccCceEeeeECCCCCeEEEEE
Confidence 43221 233344555543 46688764
No 148
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.05 E-value=87 Score=28.12 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=66.7
Q ss_pred ECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE---CCEEEEEccccCCCCCCCceEEEE
Q 020245 29 VGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV---GHTIYMFGGRDGTHKELNELYSFD 105 (329)
Q Consensus 29 ~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d 105 (329)
.+++.+++||.+ +.+.++|..+.+=.. . ++..|-.-....+ -+++|..+ ....+-+++
T Consensus 212 ~Dgkylatgg~d-------~~v~Iw~~~t~ehv~--~---~~ghr~~V~~L~fr~gt~~lys~s-------~Drsvkvw~ 272 (479)
T KOG0299|consen 212 SDGKYLATGGRD-------RHVQIWDCDTLEHVK--V---FKGHRGAVSSLAFRKGTSELYSAS-------ADRSVKVWS 272 (479)
T ss_pred CCCcEEEecCCC-------ceEEEecCcccchhh--c---ccccccceeeeeeecCccceeeee-------cCCceEEEe
Confidence 488999999964 567788887654221 1 1122222222222 13566643 122344444
Q ss_pred CCCCcEEEcccCCCCCCCcccceeEe------eCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEE
Q 020245 106 TRTNQWTLLSNGDAGPPHRSYHSTAA------DDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGL 179 (329)
Q Consensus 106 ~~~~~W~~~~~~~~~p~~r~~~~~~~------~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 179 (329)
.... ..+..+ ++|...+ -.++...+||++. ++..|++...+-.... +.....-++
T Consensus 273 ~~~~--s~vetl-------yGHqd~v~~IdaL~reR~vtVGgrDr-----T~rlwKi~eesqlifr-----g~~~sidcv 333 (479)
T KOG0299|consen 273 IDQL--SYVETL-------YGHQDGVLGIDALSRERCVTVGGRDR-----TVRLWKIPEESQLIFR-----GGEGSIDCV 333 (479)
T ss_pred hhHh--HHHHHH-------hCCccceeeechhcccceEEeccccc-----eeEEEeccccceeeee-----CCCCCeeeE
Confidence 3322 122222 2332222 2468889999875 4555555433311111 123345567
Q ss_pred EEECCEEEEEeeeCCC
Q 020245 180 IVTQGKIWVVYGFAGV 195 (329)
Q Consensus 180 ~~~~~~l~v~gG~~~~ 195 (329)
+++++.-||.|+.++.
T Consensus 334 ~~In~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 334 AFINDEHFVSGSDNGS 349 (479)
T ss_pred EEecccceeeccCCce
Confidence 7889999999987643
No 149
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=67.99 E-value=69 Score=26.57 Aligned_cols=226 Identities=12% Similarity=0.158 Sum_probs=100.2
Q ss_pred ceeEEeccCCCCC--CCCcceeEEEE--CCEEEEEcCccCCCCc-cCCce-EEEeCC-CCcEEEEeeCC-C----CCCCC
Q 020245 6 GTWIKLDQKGSGP--GARSSHAITIV--GQKVYAFGGEFTPRVP-VDNNL-HVFDLE-TLTWSVADVTG-D----VPPPR 73 (329)
Q Consensus 6 ~~W~~~~~~~~~p--~~r~~~~~~~~--~~~l~~~GG~~~~~~~-~~~~~-~~~d~~-~~~W~~~~~~~-~----~p~~r 73 (329)
.+|.....-...+ ..+....+.+. +++|+++-........ ....+ +..... ..+|....... . .+.+.
T Consensus 30 ~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~ 109 (275)
T PF13088_consen 30 KTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPG 109 (275)
T ss_dssp TEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECS
T ss_pred CeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccc
Confidence 4798865432233 23333433333 7788887522111110 01111 244444 57898765311 0 11111
Q ss_pred cceeEEEECCEEEEEccccCCCCCCCceEEEECC-CCcEEEcccCCCCCCCcccceeEe--eCCeEEEEcccCCCcCcce
Q 020245 74 VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTR-TNQWTLLSNGDAGPPHRSYHSTAA--DDRHVYIFGGCGVSGRLND 150 (329)
Q Consensus 74 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~ 150 (329)
....+..-++++++. .+.........+..+... ..+|+...... ........+.. -+++|+++--.. ... ..
T Consensus 110 ~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~-~~ 184 (275)
T PF13088_consen 110 RGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND-DI 184 (275)
T ss_dssp EEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST-EE
T ss_pred eeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC-cE
Confidence 222233447777776 222111223344445554 45798887763 12122222222 367888875432 111 23
Q ss_pred eEEEEcC-CCeEEEecCCCCCCCCCCCcEEEE-ECCEEEEEeeeCCCCcc-cEEEEeCCCCceEEeeccCCCCCC-ccee
Q 020245 151 LWGFDVV-DRKWIQYPSAGENCKGRGGPGLIV-TQGKIWVVYGFAGVEVD-DVHCFDPAHAQWAQVETSGEKPTA-RSVF 226 (329)
Q Consensus 151 ~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~v~gG~~~~~~~-~~~~~d~~~~~w~~~~~~~~~p~~-r~~~ 226 (329)
.+..... -.+|+....... |.......++. .++.++++......... .++.-..+..+|.........+.. -.+.
T Consensus 185 ~~~~S~D~G~TWs~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~ 263 (275)
T PF13088_consen 185 YISRSTDGGRTWSPPQPTNL-PNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYP 263 (275)
T ss_dssp EEEEESSTTSS-EEEEEEEC-SSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEE
T ss_pred EEEEECCCCCcCCCceeccc-CcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECC
Confidence 3333333 347998653211 23333333333 35678877763222222 222223346789876543222212 2334
Q ss_pred EEEEE-CCEEEE
Q 020245 227 STVGI-GKHIVV 237 (329)
Q Consensus 227 ~~~~~-~~~i~i 237 (329)
+++.. +++|+|
T Consensus 264 ~~~~~~dg~l~i 275 (275)
T PF13088_consen 264 SLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEETTEEEE
T ss_pred eeEEeCCCcCCC
Confidence 45555 458876
No 150
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=67.84 E-value=92 Score=27.93 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=49.9
Q ss_pred CcceeEEEECCEEEEEcCc--cCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCC
Q 020245 21 RSSHAITIVGQKVYAFGGE--FTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKEL 98 (329)
Q Consensus 21 r~~~~~~~~~~~l~~~GG~--~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 98 (329)
...+++..+++.+-+..-. -..++...|+++.+|-..+---++... .|..|. +++-..++.+|++ ..+..
T Consensus 377 ln~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl--~~gERI-YAvRf~gdv~yiV-----Tfrqt 448 (603)
T COG4880 377 LNSFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGL--APGERI-YAVRFVGDVLYIV-----TFRQT 448 (603)
T ss_pred hhcccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEecc--CCCceE-EEEEEeCceEEEE-----EEecc
Confidence 4556666666655554322 122233458999999886655555443 234454 5555678888887 56677
Q ss_pred CceEEEECCC
Q 020245 99 NELYSFDTRT 108 (329)
Q Consensus 99 ~~~~~~d~~~ 108 (329)
+.++..|+..
T Consensus 449 DPlfviDlsN 458 (603)
T COG4880 449 DPLFVIDLSN 458 (603)
T ss_pred CceEEEEcCC
Confidence 8888888764
No 151
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=67.81 E-value=1.5e+02 Score=30.50 Aligned_cols=158 Identities=10% Similarity=0.129 Sum_probs=82.0
Q ss_pred CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCC-------CC---CCcccceeEe-e-CCeEEEEcccCCCcCcc
Q 020245 82 GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDA-------GP---PHRSYHSTAA-D-DRHVYIFGGCGVSGRLN 149 (329)
Q Consensus 82 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~-------~p---~~r~~~~~~~-~-~~~i~v~GG~~~~~~~~ 149 (329)
++.+||... ..+.+++||+.+.....+...+. .+ ....-..++. - ++.|||.-..+ +
T Consensus 694 ~g~LyVad~------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~ 762 (1057)
T PLN02919 694 NEKVYIAMA------GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----S 762 (1057)
T ss_pred CCeEEEEEC------CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----C
Confidence 568888643 34678999988776554332110 00 0011112222 2 34588875432 6
Q ss_pred eeEEEEcCCCeEEEecCCC-CCCC---------------CCCC-cEEE-EECCEEEEEeeeCCCCcccEEEEeCCCCceE
Q 020245 150 DLWGFDVVDRKWIQYPSAG-ENCK---------------GRGG-PGLI-VTQGKIWVVYGFAGVEVDDVHCFDPAHAQWA 211 (329)
Q Consensus 150 ~~~~~~~~~~~W~~~~~~~-~~~~---------------~~~~-~~~~-~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~ 211 (329)
.+.+||+.++....+.... ..+. .... ..++ ..++.+||....+ +.+.+||+++....
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N----~rIrviD~~tg~v~ 838 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN----HKIKKLDPATKRVT 838 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC----CEEEEEECCCCeEE
Confidence 7899998876543222100 0000 0001 1222 3456788876443 68999999888777
Q ss_pred EeeccCC--------CCC-CcceeEEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCce
Q 020245 212 QVETSGE--------KPT-ARSVFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLV 268 (329)
Q Consensus 212 ~~~~~~~--------~p~-~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 268 (329)
.+...+. .+. -...++++.- ++++||.... .+.|.++|+++.+
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEEEEECCCCc
Confidence 6653221 000 0112233332 5688887643 2468888887764
No 152
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=65.51 E-value=98 Score=27.39 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=54.2
Q ss_pred CCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCC-CC-CC--CCCcEEEEEC
Q 020245 108 TNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGE-NC-KG--RGGPGLIVTQ 183 (329)
Q Consensus 108 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~-~~-~~--~~~~~~~~~~ 183 (329)
.+.|+.+..+ ....--++.++|++|++.- ...++.++.. -+-+++.+.-. .+ .+ ......+...
T Consensus 189 ~~~Wt~l~~~-----~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~-l~i~~v~~~i~~~~~~g~~~~~~yLVEs~ 256 (373)
T PLN03215 189 GNVLKALKQM-----GYHFSDIIVHKGQTYALDS------IGIVYWINSD-LEFSRFGTSLDENITDGCWTGDRRFVECC 256 (373)
T ss_pred CCeeeEccCC-----CceeeEEEEECCEEEEEcC------CCeEEEEecC-CceeeecceecccccCCcccCceeEEEEC
Confidence 4789998643 2334556778999999822 1345666532 12222222100 00 01 1234456677
Q ss_pred CEEEEEeeeCCC-------------C--cccEEEEeCCCCceEEeeccC
Q 020245 184 GKIWVVYGFAGV-------------E--VDDVHCFDPAHAQWAQVETSG 217 (329)
Q Consensus 184 ~~l~v~gG~~~~-------------~--~~~~~~~d~~~~~w~~~~~~~ 217 (329)
|+++++...... . .-+++..|.+..+|.++...+
T Consensus 257 GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 257 GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 889998874211 1 124566687888999987543
No 153
>PRK01742 tolB translocation protein TolB; Provisional
Probab=64.60 E-value=1.1e+02 Score=27.64 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=70.8
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcc-cCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGG-CGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
...++.+|..+.+-+.+.... . ........-+++.++++. .+.. ..+|.+|+.+.....+.... ....
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~---g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~----~~~~ 295 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFR---G-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTSGA----GNNT 295 (429)
T ss_pred CcEEEEEeCCCCceEEEecCC---C-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeeccCC----CCcC
Confidence 356899999887655554431 1 111222223554444433 2221 45888999888777665431 1112
Q ss_pred cEEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECC-EEEEEcCccCCCCCCcCCCCe
Q 020245 177 PGLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGK-HIVVYGGEVDPSDLGHLGAGK 254 (329)
Q Consensus 177 ~~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~ 254 (329)
......+++ |+......+ ..++|.++.....-+.+.. . .. .....-++ .|++.++
T Consensus 296 ~~~wSpDG~~i~f~s~~~g--~~~I~~~~~~~~~~~~l~~-----~-~~-~~~~SpDG~~ia~~~~-------------- 352 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSG--SPQVYRMSASGGGASLVGG-----R-GY-SAQISADGKTLVMING-------------- 352 (429)
T ss_pred CEEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEecC-----C-CC-CccCCCCCCEEEEEcC--------------
Confidence 222234555 444332222 2577887776554333321 1 11 11222244 4544433
Q ss_pred eeceeEEEEcCCceeEeecC
Q 020245 255 FAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 255 ~~~~~~~~d~~~~~W~~~~~ 274 (329)
+.++.+|+.+..++.+..
T Consensus 353 --~~i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 353 --DNVVKQDLTSGSTEVLSS 370 (429)
T ss_pred --CCEEEEECCCCCeEEecC
Confidence 257778998888876653
No 154
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=64.46 E-value=1.1e+02 Score=27.67 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=62.9
Q ss_pred CCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCC
Q 020245 95 HKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGR 174 (329)
Q Consensus 95 ~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 174 (329)
.....++|.+|..+.+-.++... +..-...+....+.+|+..-.+.. ...+++++++..+-++++... +.
T Consensus 258 rdg~~~iy~~dl~~~~~~~Lt~~---~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~----~~ 327 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLPRLTNG---FGINTSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSG----GG 327 (425)
T ss_pred CCCCccEEEEcCCCCcceecccC---CccccCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccC----CC
Confidence 34677899999998774444333 122222333333445555533222 248999999998877777653 22
Q ss_pred CCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCc-eEEeec
Q 020245 175 GGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQ-WAQVET 215 (329)
Q Consensus 175 ~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~-w~~~~~ 215 (329)
..+-...-+++.+++-+..+.. ..+..+|+.+.. |+.+..
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCc-eeeEEeccCCCCcEEEccc
Confidence 2233344556555554432112 567888886665 877764
No 155
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=64.32 E-value=22 Score=19.47 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=20.1
Q ss_pred eeEEeccCCCCCCCCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCCC
Q 020245 7 TWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLET 57 (329)
Q Consensus 7 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~ 57 (329)
.|+.-.. .....+.++.++.||+.+. ...++++|+.+
T Consensus 4 ~W~~~~~------~~~~~~~~v~~g~vyv~~~--------dg~l~ald~~t 40 (40)
T PF13570_consen 4 LWSYDTG------GPIWSSPAVAGGRVYVGTG--------DGNLYALDAAT 40 (40)
T ss_dssp EEEEE-S------S---S--EECTSEEEEE-T--------TSEEEEEETT-
T ss_pred eEEEECC------CCcCcCCEEECCEEEEEcC--------CCEEEEEeCCC
Confidence 5776433 1333444667888888665 26799999763
No 156
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=63.76 E-value=85 Score=26.07 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=58.9
Q ss_pred CCcceeEEEECCEEEEEcCccCCCCccCCceEEEeCC-----CCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCC
Q 020245 20 ARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLE-----TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGT 94 (329)
Q Consensus 20 ~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~-----~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 94 (329)
.-.-|+.|.+++.-|.+|=.++.-.+..-.+..|... .-.-++++.. .....+-.+.-..++.||+.--...+
T Consensus 135 vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se--y~~~AsEPCvkyY~g~LyLtTRgt~~ 212 (367)
T PF12217_consen 135 VTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE--YERNASEPCVKYYDGVLYLTTRGTLP 212 (367)
T ss_dssp -SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG--G-TTEEEEEEEEETTEEEEEEEES-T
T ss_pred eeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh--hccccccchhhhhCCEEEEEEcCcCC
Confidence 4567888888887777774333222211233444322 1112333332 11222333444679999987644435
Q ss_pred CCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEccc
Q 020245 95 HKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGC 142 (329)
Q Consensus 95 ~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 142 (329)
.+.-+.+.+-+.....|..+..... ...+.--.+..++.||+||-.
T Consensus 213 ~~~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 213 TNPGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp TS---EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-
T ss_pred CCCcceeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEecc
Confidence 5667788888888899998876532 223333345679999999964
No 157
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=63.48 E-value=1.2e+02 Score=27.71 Aligned_cols=185 Identities=12% Similarity=0.126 Sum_probs=86.6
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..+.+||..... ..+......+... ...+..-.+++++.|+.+ ..+..+|+.+.+-.+.-.. ....-..
T Consensus 225 ~tiriwd~~~~~-~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~~~l~~---hs~~is~ 293 (456)
T KOG0266|consen 225 KTLRIWDLKDDG-RNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDD------GTVRIWDVRTGECVRKLKG---HSDGISG 293 (456)
T ss_pred ceEEEeeccCCC-eEEEEecCCCCce-EEEEecCCCCEEEEecCC------CcEEEEeccCCeEEEeeec---cCCceEE
Confidence 567788884332 1222211122222 122222334788888766 5788889888543322211 1112222
Q ss_pred eeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCC
Q 020245 128 STAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAH 207 (329)
Q Consensus 128 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~ 207 (329)
.++.-++.+++.+..+ ..+.+||..+..-.-+..+...........+....+-.|++.+..+ ..+-.+|...
T Consensus 294 ~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d---~~~~~w~l~~ 365 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD---RTLKLWDLRS 365 (456)
T ss_pred EEECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC---CeEEEEEccC
Confidence 3333467777777543 5688899998774311111110111112222333444555544432 2444555554
Q ss_pred CceEEeeccCCCCCC-cceeEEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCc
Q 020245 208 AQWAQVETSGEKPTA-RSVFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETL 267 (329)
Q Consensus 208 ~~w~~~~~~~~~p~~-r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~ 267 (329)
..-..... ..... +..+..+.. ++..++.|.. -..|..+|+.+.
T Consensus 366 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~--------------d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 366 GKSVGTYT--GHSNLVRCIFSPTLSTGGKLIYSGSE--------------DGSVYVWDSSSG 411 (456)
T ss_pred Ccceeeec--ccCCcceeEecccccCCCCeEEEEeC--------------CceEEEEeCCcc
Confidence 33222221 11111 333344433 4455555553 246888888863
No 158
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=63.08 E-value=1.2e+02 Score=27.66 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=52.9
Q ss_pred CceEEEECCCC--cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCC
Q 020245 99 NELYSFDTRTN--QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 176 (329)
Q Consensus 99 ~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 176 (329)
..+.+||.... .-+.+... +... ...++...+++++.|+.+ .++..+|..+.+-...-.. -.....
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH---~~~v-~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~~l~~---hs~~is 292 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGH---STYV-TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECVRKLKG---HSDGIS 292 (456)
T ss_pred ceEEEeeccCCCeEEEEecCC---CCce-EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEEEeeec---cCCceE
Confidence 46777887433 22333322 1222 222223355788888866 4688999998654443332 122222
Q ss_pred cEEEEECCEEEEEeeeCCCCcccEEEEeCCCCce
Q 020245 177 PGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQW 210 (329)
Q Consensus 177 ~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w 210 (329)
..+..-++..++.+..+ ..+..||..+..-
T Consensus 293 ~~~f~~d~~~l~s~s~d----~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYD----GTIRVWDLETGSK 322 (456)
T ss_pred EEEECCCCCEEEEcCCC----ccEEEEECCCCce
Confidence 22233456677766544 5788899887774
No 159
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=62.29 E-value=89 Score=25.82 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=65.3
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..|-.+|..+.+-.+-.. .+.+.. ..=+..+++|..+- .-+.+-.+|+.+-.--+--.+ |.....+
T Consensus 165 ~tVRLWD~rTgt~v~sL~---~~s~Vt-SlEvs~dG~ilTia-------~gssV~Fwdaksf~~lKs~k~---P~nV~SA 230 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE---FNSPVT-SLEVSQDGRILTIA-------YGSSVKFWDAKSFGLLKSYKM---PCNVESA 230 (334)
T ss_pred CceEEEEeccCcEEEEEe---cCCCCc-ceeeccCCCEEEEe-------cCceeEEeccccccceeeccC---ccccccc
Confidence 567778888776543222 122221 12223344444431 223456666655332222222 4444443
Q ss_pred eeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEE-EECCEEEEEeeeCCCCcccEEEEeC
Q 020245 128 STAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLI-VTQGKIWVVYGFAGVEVDDVHCFDP 205 (329)
Q Consensus 128 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~v~gG~~~~~~~~~~~~d~ 205 (329)
++- -+..+||.||.+ -.+++||..|+.=...-... ....-|++- .-++.+|..|..++. -.+|.-.+
T Consensus 231 SL~-P~k~~fVaGged-----~~~~kfDy~TgeEi~~~nkg---h~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~ 298 (334)
T KOG0278|consen 231 SLH-PKKEFFVAGGED-----FKVYKFDYNTGEEIGSYNKG---HFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTP 298 (334)
T ss_pred ccc-CCCceEEecCcc-----eEEEEEeccCCceeeecccC---CCCceEEEEECCCCceeeccCCCce--EEEEEecC
Confidence 333 245899999965 34678888776522221111 222223332 347889998865543 34444444
No 160
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=62.25 E-value=40 Score=26.35 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=35.9
Q ss_pred eceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccCCc
Q 020245 256 AGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGI 327 (329)
Q Consensus 256 ~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~ 327 (329)
..++|++|...+.|..+...+... .-.|+. +.=+++...++|+|-.-+.-..=.++|+|++.+...
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~-k~sPK~-----i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~ 152 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEE-KYSPKY-----IEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNL 152 (200)
T ss_pred ceeEEEEecCCCceEEEEecCccc-ccCCce-----eEEecCCcEEEEEccccceEccCCeEEEEEccCCce
Confidence 568999999988887765422210 112221 122444234555553332222334789998887643
No 161
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=60.91 E-value=1.8e+02 Score=28.79 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=21.8
Q ss_pred eeEEEECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEe
Q 020245 24 HAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVAD 64 (329)
Q Consensus 24 ~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~ 64 (329)
.+-+++++.||+.... +.++.+|..+.+ |+.-+
T Consensus 188 ~TPlvvgg~lYv~t~~--------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH--------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC--------CeEEEEECCCCcEEEEEcC
Confidence 3445679999997542 568888887544 65433
No 162
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=60.06 E-value=1.2e+02 Score=26.75 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=108.8
Q ss_pred CEEEEEcCccCCCCccCCceEEEeCCCCcEE-EEeeCCCCCCCCcceeEE-EECCEEEEEccccCCCCCCCceEEEECCC
Q 020245 31 QKVYAFGGEFTPRVPVDNNLHVFDLETLTWS-VADVTGDVPPPRVGVTMA-AVGHTIYMFGGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 31 ~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 108 (329)
..+|+.+. + ..+.++|+.+.+-. ++. .......++ +-+++..+.+.+ ....+..+|..+
T Consensus 49 r~~yv~~r-d-------g~vsviD~~~~~~v~~i~------~G~~~~~i~~s~DG~~~~v~n~-----~~~~v~v~D~~t 109 (369)
T PF02239_consen 49 RYLYVANR-D-------GTVSVIDLATGKVVATIK------VGGNPRGIAVSPDGKYVYVANY-----EPGTVSVIDAET 109 (369)
T ss_dssp SEEEEEET-T-------SEEEEEETTSSSEEEEEE-------SSEEEEEEE--TTTEEEEEEE-----ETTEEEEEETTT
T ss_pred CEEEEEcC-C-------CeEEEEECCcccEEEEEe------cCCCcceEEEcCCCCEEEEEec-----CCCceeEecccc
Confidence 47888753 1 56889999987732 222 222223333 334443343322 346888999887
Q ss_pred CcE-EEcccCC---CCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECC
Q 020245 109 NQW-TLLSNGD---AGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQG 184 (329)
Q Consensus 109 ~~W-~~~~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 184 (329)
.+= ..++..+ ..+..|-........+..|++--.+. ..++..|....+-...... ..++.-|-.....+
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~----~~I~vVdy~d~~~~~~~~i---~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT----GEIWVVDYSDPKNLKVTTI---KVGRFPHDGGFDPD 182 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT----TEEEEEETTTSSCEEEEEE---E--TTEEEEEE-TT
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEEccC----CeEEEEEeccccccceeee---cccccccccccCcc
Confidence 643 3333221 11334543333444556566543332 5678887665432222222 13444455544433
Q ss_pred EEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCCcCCCCeeeceeEEEE
Q 020245 185 KIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIG-KHIVVYGGEVDPSDLGHLGAGKFAGELYSLD 263 (329)
Q Consensus 185 ~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d 263 (329)
.-|++.+.. ..+.+-..|.++.+-..+...+..|.+.....+.-.+ +-++..++.... .-...--|
T Consensus 183 gry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~-----------~~~~ig~~ 249 (369)
T PF02239_consen 183 GRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF-----------AIPLIGTD 249 (369)
T ss_dssp SSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS-----------EEEEEE--
T ss_pred cceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce-----------ecccccCC
Confidence 333333332 2257888898877655544333333333333332222 234444443211 11122222
Q ss_pred c----CCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCCCCCCCcccceEEEecccC
Q 020245 264 T----ETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLD 325 (329)
Q Consensus 264 ~----~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~ 325 (329)
. ....|+.+.. ++..... +-+....+.+.+|+=-=.+ ...+.|.++|.++.
T Consensus 250 ~v~v~d~~~wkvv~~------I~~~G~g--lFi~thP~s~~vwvd~~~~---~~~~~v~viD~~tl 304 (369)
T PF02239_consen 250 PVSVHDDYAWKVVKT------IPTQGGG--LFIKTHPDSRYVWVDTFLN---PDADTVQVIDKKTL 304 (369)
T ss_dssp TTT-STTTBTSEEEE------EE-SSSS----EE--TT-SEEEEE-TT----SSHT-EEEEECCGT
T ss_pred ccccchhhcCeEEEE------EECCCCc--ceeecCCCCccEEeeccCC---CCCceEEEEECcCc
Confidence 2 2357888876 4444333 3333334335666631111 22678899998775
No 163
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=56.95 E-value=1.6e+02 Score=27.11 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=17.5
Q ss_pred ccccCCcceEEEEcCCCCCCCcccceEEEeccc
Q 020245 292 GGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCL 324 (329)
Q Consensus 292 ~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~ 324 (329)
++.-.+ ..|++.|--...+.....++.||..+
T Consensus 415 c~FSPd-~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 415 CCFSPD-DKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cccCCC-ceEEEecccccCCCCCceEEEEeccc
Confidence 344444 44777765544444444577777654
No 164
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=55.51 E-value=1.5e+02 Score=26.33 Aligned_cols=232 Identities=14% Similarity=0.019 Sum_probs=100.1
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEE-ccccCCCCCCCceEEEECCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMF-GGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~~~d~~~ 108 (329)
+++-+||++... -...++.+|+.+.+-.++..-. .....+.....-++.+|.+ .+ ..+...|+.|
T Consensus 46 dG~kllF~s~~d----g~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~T 111 (386)
T PF14583_consen 46 DGRKLLFASDFD----GNRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVKNG--------RSLRRVDLDT 111 (386)
T ss_dssp TS-EEEEEE-TT----SS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT--------TEEEEEETTT
T ss_pred CCCEEEEEeccC----CCcceEEEEcccCEEEECccCC--CCCccceEEecCCCeEEEEECC--------CeEEEEECCc
Confidence 444445554322 1368999999999988877632 1223333333334565433 22 4688899988
Q ss_pred CcEEEcccCCCCCCCcccceeEe--eCCeEEEEcccCC------------------CcCcceeEEEEcCCCeEEEecCCC
Q 020245 109 NQWTLLSNGDAGPPHRSYHSTAA--DDRHVYIFGGCGV------------------SGRLNDLWGFDVVDRKWIQYPSAG 168 (329)
Q Consensus 109 ~~W~~~~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~------------------~~~~~~~~~~~~~~~~W~~~~~~~ 168 (329)
.+=+.+-.. |..-.+....+ .++.. ++|=... ......+...|+.+++.+.+-...
T Consensus 112 ~e~~~vy~~---p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~ 187 (386)
T PF14583_consen 112 LEERVVYEV---PDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT 187 (386)
T ss_dssp --EEEEEE-----TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES
T ss_pred CcEEEEEEC---CcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC
Confidence 765555444 33322222222 12333 2221100 113467888899998887777652
Q ss_pred CCCCCCCCcEEEE-ECCEEEE--EeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEECC-EEEEEcCccCC
Q 020245 169 ENCKGRGGPGLIV-TQGKIWV--VYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGK-HIVVYGGEVDP 244 (329)
Q Consensus 169 ~~~~~~~~~~~~~-~~~~l~v--~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~-~i~i~GG~~~~ 244 (329)
...+|--.. .+..+++ .-|--...-.+||..+.+....+.+... .+....+|=--..++ .|+..+.....
T Consensus 188 ----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 188 ----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp ----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred ----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEEEeecCCC
Confidence 223333332 2233333 3332222234999999888777777642 234444554444455 44443332211
Q ss_pred CCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCC
Q 020245 245 SDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGN 307 (329)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~ 307 (329)
...-+..+|+++..=+.+.. +| +.. |-....+++ +++-=|-
T Consensus 262 ----------~~~~i~~~d~~t~~~~~~~~------~p--~~~--H~~ss~Dg~--L~vGDG~ 302 (386)
T PF14583_consen 262 ----------QDFWIAGYDPDTGERRRLME------MP--WCS--HFMSSPDGK--LFVGDGG 302 (386)
T ss_dssp ------------EEEEEE-TTT--EEEEEE------E---SEE--EEEE-TTSS--EEEEEE-
T ss_pred ----------CceEEEeeCCCCCCceEEEe------CC--cee--eeEEcCCCC--EEEecCC
Confidence 12347788888764344443 33 343 666667754 6665443
No 165
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.79 E-value=1.3e+02 Score=25.21 Aligned_cols=63 Identities=27% Similarity=0.381 Sum_probs=41.1
Q ss_pred EEEEeeeCCCCcccEEEEeCCCC--ceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEE
Q 020245 186 IWVVYGFAGVEVDDVHCFDPAHA--QWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLD 263 (329)
Q Consensus 186 l~v~gG~~~~~~~~~~~~d~~~~--~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d 263 (329)
+.++|.+. ..+...|+.+. .|+.+- ..|...+++++++. +++|-+ ...+|.++
T Consensus 25 ~v~igSHs----~~~~avd~~sG~~~We~il------g~RiE~sa~vvgdf-VV~GCy--------------~g~lYfl~ 79 (354)
T KOG4649|consen 25 LVVIGSHS----GIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDF-VVLGCY--------------SGGLYFLC 79 (354)
T ss_pred EEEEecCC----ceEEEecCCCCcEEeehhh------CceeeeeeEEECCE-EEEEEc--------------cCcEEEEE
Confidence 45555543 46666777554 577653 56777777788888 556764 45688888
Q ss_pred cCCc--eeEeec
Q 020245 264 TETL--VWTRWD 273 (329)
Q Consensus 264 ~~~~--~W~~~~ 273 (329)
.++. .|.-+.
T Consensus 80 ~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 80 VKTGSQIWNFVI 91 (354)
T ss_pred ecchhheeeeee
Confidence 7765 576554
No 166
>PRK10115 protease 2; Provisional
Probab=54.61 E-value=2.2e+02 Score=27.82 Aligned_cols=195 Identities=10% Similarity=-0.022 Sum_probs=93.8
Q ss_pred CCCceEEEECCCCcE--EEcccCCCCCCCcccceeEee-CCeEEEEcccCCCcCcceeEEEEc--CCCeEEEecCCCCCC
Q 020245 97 ELNELYSFDTRTNQW--TLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDV--VDRKWIQYPSAGENC 171 (329)
Q Consensus 97 ~~~~~~~~d~~~~~W--~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~--~~~~W~~~~~~~~~~ 171 (329)
...+++++++.+..- ..+-... ........... +++..++..... ....++.++. .+..|..+.+..
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~e~---~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~--- 268 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYEEK---DDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRR--- 268 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEeeC---CCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECC---
Confidence 447899999887732 2222111 11222222222 444444544322 2245677773 344443333321
Q ss_pred CCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC-CCceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcC
Q 020245 172 KGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA-HAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHL 250 (329)
Q Consensus 172 ~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~-~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~ 250 (329)
..........++.+|+.-... .....+...+.. ..+|+.+.... ..+.--.+...++.|++..-...
T Consensus 269 -~~~~~~~~~~~~~ly~~tn~~-~~~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~l~~~~~~~g------- 336 (686)
T PRK10115 269 -KDHEYSLDHYQHRFYLRSNRH-GKNFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLFTDWLVVEERQRG------- 336 (686)
T ss_pred -CCCEEEEEeCCCEEEEEEcCC-CCCceEEEecCCCcccCeEEECCC---CCCEEEEEEEECCEEEEEEEeCC-------
Confidence 111222334467788875432 233457777776 57898887431 22222234455777777653211
Q ss_pred CCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccc-cCCcceEEEEcCCCCCCCcccceEEEecccCCc
Q 020245 251 GAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGL-RGGKHGLLVYGGNSPSNDRLDDIYFFTPCLDGI 327 (329)
Q Consensus 251 ~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~-~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~~~ 327 (329)
...++.+|..+.....+.- +.+......+... .++...++.+.+... -.++|.||+.+.++
T Consensus 337 -----~~~l~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~ss~~~----P~~~y~~d~~~~~~ 398 (686)
T PRK10115 337 -----LTSLRQINRKTREVIGIAF-------DDPAYVTWIAYNPEPETSRLRYGYSSMTT----PDTLFELDMDTGER 398 (686)
T ss_pred -----EEEEEEEcCCCCceEEecC-------CCCceEeeecccCCCCCceEEEEEecCCC----CCEEEEEECCCCcE
Confidence 3568888876655555541 2222210011111 222122334554432 35888888877654
No 167
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=54.41 E-value=1.5e+02 Score=25.85 Aligned_cols=158 Identities=12% Similarity=0.158 Sum_probs=74.3
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEE-EECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMA-AVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSY 126 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~ 126 (329)
+.+-.+|-.+..... ......+...+ -++++++|-|..+ +.+-++|..++.- +.. ..+
T Consensus 217 nTikiWD~n~~~c~~------~L~GHtGSVLCLqyd~rviisGSSD------sTvrvWDv~tge~--l~t-------lih 275 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLK------ILTGHTGSVLCLQYDERVIVSGSSD------STVRVWDVNTGEP--LNT-------LIH 275 (499)
T ss_pred CceEEeccccHHHHH------hhhcCCCcEEeeeccceEEEecCCC------ceEEEEeccCCch--hhH-------Hhh
Confidence 566667655433221 11333344433 4678888876544 5677888777642 121 122
Q ss_pred ceeEe----eCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEE
Q 020245 127 HSTAA----DDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHC 202 (329)
Q Consensus 127 ~~~~~----~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~ 202 (329)
|+-++ +.+.+.|-...+ .++-++|+..-+ .++-.-..-.-|..-.++-++++.+|... ++ ..+-.
T Consensus 276 HceaVLhlrf~ng~mvtcSkD-----rsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~kyIVsAS--gD--RTikv 344 (499)
T KOG0281|consen 276 HCEAVLHLRFSNGYMVTCSKD-----RSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDDKYIVSAS--GD--RTIKV 344 (499)
T ss_pred hcceeEEEEEeCCEEEEecCC-----ceeEEEeccCch--HHHHHHHHhhhhhheeeeccccceEEEec--CC--ceEEE
Confidence 32222 233333332222 334445444322 11111000011222223345677444332 22 35566
Q ss_pred EeCCCCceEEeeccCCCCCCcceeEEEEECCEEEEEcCcc
Q 020245 203 FDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEV 242 (329)
Q Consensus 203 ~d~~~~~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~ 242 (329)
+++.+..+...- ..-+.+-+|..+.+++++-|-.+
T Consensus 345 W~~st~efvRtl-----~gHkRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 345 WSTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred Eeccceeeehhh-----hcccccceehhccCeEEEecCCC
Confidence 677666554322 24455667778899998887643
No 168
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=54.21 E-value=1.5e+02 Score=25.91 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=61.5
Q ss_pred CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeC--CCCce
Q 020245 133 DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDP--AHAQW 210 (329)
Q Consensus 133 ~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~--~~~~w 210 (329)
+..+.+-||-+ +..+.|++.++.|....+- -.-..-.++..+++.+...|+.++ .+.++.. ...+|
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~eltg---HKDSVt~~~FshdgtlLATGdmsG----~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGELTG---HKDSVTCCSFSHDGTLLATGDMSG----KVLVFKVSTGGEQW 142 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeEecC---CCCceEEEEEccCceEEEecCCCc----cEEEEEcccCceEE
Confidence 66788888866 3567888888886544332 111222333456788888888774 4444444 44556
Q ss_pred EEeeccCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeec
Q 020245 211 AQVETSGEKPTARSVFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWD 273 (329)
Q Consensus 211 ~~~~~~~~~p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 273 (329)
.......++-- +.-+ ...|+++|-. -..+|.|.+.++.-.++-
T Consensus 143 ~~~~e~~dieW------l~WHp~a~illAG~~--------------DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 143 KLDQEVEDIEW------LKWHPRAHILLAGST--------------DGSVWMWQIPSQALCKVM 186 (399)
T ss_pred EeecccCceEE------EEecccccEEEeecC--------------CCcEEEEECCCcceeeEe
Confidence 55422111110 0011 3367777754 246999999886444443
No 169
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=53.90 E-value=96 Score=23.56 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=50.2
Q ss_pred EeeCCeEEEEcccCCCcCcceeEEEEcCCCeE-EEecCCCCCCCCCCCcEEE-EECCEEEEEeeeCCCCcccEEEEeC--
Q 020245 130 AADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW-IQYPSAGENCKGRGGPGLI-VTQGKIWVVYGFAGVEVDDVHCFDP-- 205 (329)
Q Consensus 130 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W-~~~~~~~~~~~~~~~~~~~-~~~~~l~v~gG~~~~~~~~~~~~d~-- 205 (329)
+.++|.+|-++-.........+..||+.+++. ..++.+...........+. +.+++|.++--......-+||..+-
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~ 81 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG 81 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence 45688888887655443333799999999999 5444332111011222232 2367777774322223357777762
Q ss_pred -CCCceEEeecc
Q 020245 206 -AHAQWAQVETS 216 (329)
Q Consensus 206 -~~~~w~~~~~~ 216 (329)
....|+++-..
T Consensus 82 ~~~~SWtK~~~i 93 (164)
T PF07734_consen 82 YGKESWTKLFTI 93 (164)
T ss_pred cCcceEEEEEEE
Confidence 36799997653
No 170
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=53.29 E-value=89 Score=23.03 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=37.9
Q ss_pred CEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCCcCCCCeeeceeE
Q 020245 184 GKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI---GKHIVVYGGEVDPSDLGHLGAGKFAGELY 260 (329)
Q Consensus 184 ~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~---~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 260 (329)
..+.++|- ...+..||...+.=.-.. +.|.....-.+..+ ...+.++||. ..++
T Consensus 64 ~D~LliGt-----~t~llaYDV~~N~d~Fyk---e~~DGvn~i~~g~~~~~~~~l~ivGGn---------------csi~ 120 (136)
T PF14781_consen 64 RDCLLIGT-----QTSLLAYDVENNSDLFYK---EVPDGVNAIVIGKLGDIPSPLVIVGGN---------------CSIQ 120 (136)
T ss_pred cCEEEEec-----cceEEEEEcccCchhhhh---hCccceeEEEEEecCCCCCcEEEECce---------------EEEE
Confidence 34677764 368999999776422111 33333222222222 4589999993 5788
Q ss_pred EEEcCCce--eEe
Q 020245 261 SLDTETLV--WTR 271 (329)
Q Consensus 261 ~~d~~~~~--W~~ 271 (329)
-||.+.+. |+.
T Consensus 121 Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 121 GFDYEGNEIFWTV 133 (136)
T ss_pred EeCCCCcEEEEEe
Confidence 88886553 654
No 171
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=51.97 E-value=1.4e+02 Score=24.78 Aligned_cols=206 Identities=16% Similarity=0.211 Sum_probs=95.5
Q ss_pred CCCcEEEEeeCCCCC--CCCcceeEEEE--CCEEEEEccccCCC---CCCCceEEEECC-CCcEEEcccCCC-----CCC
Q 020245 56 ETLTWSVADVTGDVP--PPRVGVTMAAV--GHTIYMFGGRDGTH---KELNELYSFDTR-TNQWTLLSNGDA-----GPP 122 (329)
Q Consensus 56 ~~~~W~~~~~~~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~---~~~~~~~~~d~~-~~~W~~~~~~~~-----~p~ 122 (329)
...+|.........+ ..+....+.+. +++|+++-...... ......+..... ..+|........ .+.
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 356797765533222 22233333332 77888886222111 111111244444 568987764311 011
Q ss_pred CcccceeEeeCCeEEEEcccCCCcCcceeEEEEcC-CCeEEEecCCCCCCC-CCCCcEEEE-ECCEEEEEeeeCCCCccc
Q 020245 123 HRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVV-DRKWIQYPSAGENCK-GRGGPGLIV-TQGKIWVVYGFAGVEVDD 199 (329)
Q Consensus 123 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~-~~~~~~~~~-~~~~l~v~gG~~~~~~~~ 199 (329)
+-....+..-++++++..-............+... -.+|+...... .. .....+.+. .++.++++.-..... ..
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~~-~~ 184 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGND-DI 184 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSST-EE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCCC-cE
Confidence 11222234447788877211111123344445444 45798888763 11 122222222 367888876442111 23
Q ss_pred EEEEeCC-CCceEEeeccCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 200 VHCFDPA-HAQWAQVETSGEKPTARSVFSTVGI-GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 200 ~~~~d~~-~~~w~~~~~~~~~p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
.+.+..+ -.+|+..... .+|.+.....++.+ ++.++++...... ...-.++.-.-...+|.....
T Consensus 185 ~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------r~~l~l~~S~D~g~tW~~~~~ 251 (275)
T PF13088_consen 185 YISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDG---------RSNLSLYVSEDGGKTWSRPKT 251 (275)
T ss_dssp EEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSST---------SEEEEEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCC---------CCceEEEEEeCCCCcCCccEE
Confidence 3333333 4589986532 44555554444444 4577777662111 112345454555889986654
No 172
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=50.88 E-value=1.1e+02 Score=23.27 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=49.2
Q ss_pred EEECCEEEEEccccCCCCCCCceEEEECCCCcE-EEcccCCCCCCCcccceeE-eeCCeEEEEcccCCCcCcceeEEEEc
Q 020245 79 AAVGHTIYMFGGRDGTHKELNELYSFDTRTNQW-TLLSNGDAGPPHRSYHSTA-ADDRHVYIFGGCGVSGRLNDLWGFDV 156 (329)
Q Consensus 79 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~ 156 (329)
+.+++.+|-+.-.. ......-+..||..+.++ ..++.+...........+. ..+++|-++--. .....-.+|+.+-
T Consensus 2 V~vnG~~hW~~~~~-~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDE-NNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEec-CCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEEEee
Confidence 46778888776544 222222689999999999 5554432111011222332 236677777331 1222356666662
Q ss_pred ---CCCeEEEecCCC
Q 020245 157 ---VDRKWIQYPSAG 168 (329)
Q Consensus 157 ---~~~~W~~~~~~~ 168 (329)
...+|+++-..+
T Consensus 80 ~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 80 YGYGKESWTKLFTID 94 (164)
T ss_pred eccCcceEEEEEEEe
Confidence 267899987654
No 173
>PTZ00420 coronin; Provisional
Probab=50.62 E-value=2.3e+02 Score=26.91 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=52.2
Q ss_pred EEEEEccccCCCCCCCceEEEECCCCcEE-EcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEE
Q 020245 84 TIYMFGGRDGTHKELNELYSFDTRTNQWT-LLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWI 162 (329)
Q Consensus 84 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~ 162 (329)
.+++.||.+ ..+..||+.+.+=. .+. . +. .-.......++.+++.++.+ ..+..||+.+.+-.
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~~i~-~---~~-~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAFQIN-M---PK-KLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEEEEe-c---CC-cEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEE
Confidence 455556554 46788898776411 111 1 11 11111222367777776643 46889999876532
Q ss_pred EecCCCCCCCCCCCcEEEE-----ECCEEEEEeeeCCCCcccEEEEeCCC
Q 020245 163 QYPSAGENCKGRGGPGLIV-----TQGKIWVVYGFAGVEVDDVHCFDPAH 207 (329)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~-----~~~~l~v~gG~~~~~~~~~~~~d~~~ 207 (329)
. .... .........+. .++..++.+|.++.....+..||+..
T Consensus 203 ~--tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 S--SFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred E--EEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 2 1110 01111111111 24556666676543334688888764
No 174
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.68 E-value=1.4e+02 Score=24.13 Aligned_cols=60 Identities=12% Similarity=-0.075 Sum_probs=40.0
Q ss_pred eeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeee
Q 020245 128 STAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGF 192 (329)
Q Consensus 128 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~ 192 (329)
.+...+++|+.--|+... ..+.++|+.+.+-..-.+++ |...++-..+..++.+|.+--.
T Consensus 50 GL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~ 109 (262)
T COG3823 50 GLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWK 109 (262)
T ss_pred ceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEec
Confidence 344567888888776554 67899999977644444443 2344556667788999988653
No 175
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=48.16 E-value=2.7e+02 Score=27.12 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=68.0
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEE--ECCEEEEEccccCCCCCCCceEEEECC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA--VGHTIYMFGGRDGTHKELNELYSFDTR 107 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 107 (329)
++.+.+.|+.+ +.|-+||....- ..+.-. .+.++++++. ..++..+- ...-..|-.+|..
T Consensus 361 Dgq~iaTG~eD-------gKVKvWn~~Sgf-C~vTFt----eHts~Vt~v~f~~~g~~lls------sSLDGtVRAwDlk 422 (893)
T KOG0291|consen 361 DGQLIATGAED-------GKVKVWNTQSGF-CFVTFT----EHTSGVTAVQFTARGNVLLS------SSLDGTVRAWDLK 422 (893)
T ss_pred CCcEEEeccCC-------CcEEEEeccCce-EEEEec----cCCCceEEEEEEecCCEEEE------eecCCeEEeeeec
Confidence 66777777643 678888877543 222221 2333344332 23333332 1222356667766
Q ss_pred CCc-EEEcccCCCCCCCcccceeEeeC--CeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcE-EEEEC
Q 020245 108 TNQ-WTLLSNGDAGPPHRSYHSTAADD--RHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPG-LIVTQ 183 (329)
Q Consensus 108 ~~~-W~~~~~~~~~p~~r~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ 183 (329)
..+ ++.... |.++ .++++..+ |.++++|+.+. -.+++++.+|++-..+-.. +...-++ +....
T Consensus 423 RYrNfRTft~----P~p~-QfscvavD~sGelV~AG~~d~----F~IfvWS~qTGqllDiLsG----HEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 423 RYRNFRTFTS----PEPI-QFSCVAVDPSGELVCAGAQDS----FEIFVWSVQTGQLLDILSG----HEGPVSGLSFSPD 489 (893)
T ss_pred ccceeeeecC----CCce-eeeEEEEcCCCCEEEeeccce----EEEEEEEeecCeeeehhcC----CCCcceeeEEccc
Confidence 432 333322 3444 44444454 88999988765 5678888888875444332 1111122 12234
Q ss_pred CEEEEEeeeC
Q 020245 184 GKIWVVYGFA 193 (329)
Q Consensus 184 ~~l~v~gG~~ 193 (329)
+.+.+-|.++
T Consensus 490 ~~~LaS~SWD 499 (893)
T KOG0291|consen 490 GSLLASGSWD 499 (893)
T ss_pred cCeEEecccc
Confidence 5566666555
No 176
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=46.42 E-value=21 Score=24.82 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=13.4
Q ss_pred ceEEEEcCCCCCCCcccceEEEecc
Q 020245 299 HGLLVYGGNSPSNDRLDDIYFFTPC 323 (329)
Q Consensus 299 ~~i~i~GG~~~~~~~~~~v~~~~~~ 323 (329)
+.++|.||..++.=.++.+|+||+.
T Consensus 37 G~F~vLGG~~EMpW~FdRlykydIT 61 (103)
T PF14830_consen 37 GTFFVLGGEKEMPWAFDRLYKYDIT 61 (103)
T ss_dssp EEEEE---TTS---B-SS-EEEE-H
T ss_pred cEEEEcCCCccCccccCccchhhHH
Confidence 5599999998876678899999974
No 177
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=44.51 E-value=2.4e+02 Score=25.50 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.2
Q ss_pred EEEEEccccCCCCCCCceEEEECCCCcEEEcccCC
Q 020245 84 TIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGD 118 (329)
Q Consensus 84 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~ 118 (329)
..++++|.. ..|+||..++.-+.++...
T Consensus 101 q~V~i~G~~-------~gYrYdgat~~l~~~~~~~ 128 (469)
T PF11134_consen 101 QAVAINGKL-------KGYRYDGATKTLSNWPTDE 128 (469)
T ss_pred eEEEEcccc-------ceEEEechhhHhhcCCCcC
Confidence 356666644 6899999988766666553
No 178
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=43.80 E-value=2.1e+02 Score=24.47 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=69.0
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYH 127 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 127 (329)
..+-.||...+.-+..-.. ...-..++..+..-.+.||.+ ..+-+||..+..=.++.... .+. -
T Consensus 35 gslrlYdv~~~~l~~~~~~-----~~plL~c~F~d~~~~~~G~~d------g~vr~~Dln~~~~~~igth~---~~i--~ 98 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKLKFKH-----GAPLLDCAFADESTIVTGGLD------GQVRRYDLNTGNEDQIGTHD---EGI--R 98 (323)
T ss_pred CcEEEEeccchhhhhheec-----CCceeeeeccCCceEEEeccC------ceEEEEEecCCcceeeccCC---Cce--E
Confidence 5677788776632221111 111133444555555667766 57889999987766665542 111 1
Q ss_pred eeEe-eCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC
Q 020245 128 STAA-DDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 128 ~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~ 206 (329)
++.. .....+|.||++ .++-.+|+.+.. .+.... .+..-.++.+. +..+|+|+.+ ..+..||+.
T Consensus 99 ci~~~~~~~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d---~~kkVy~~~v~-g~~LvVg~~~----r~v~iyDLR 163 (323)
T KOG1036|consen 99 CIEYSYEVGCVISGSWD-----KTIKFWDPRNKV--VVGTFD---QGKKVYCMDVS-GNRLVVGTSD----RKVLIYDLR 163 (323)
T ss_pred EEEeeccCCeEEEcccC-----ccEEEEeccccc--cccccc---cCceEEEEecc-CCEEEEeecC----ceEEEEEcc
Confidence 1111 344566888887 467888888622 111111 12223333334 4455555543 578888886
Q ss_pred CC
Q 020245 207 HA 208 (329)
Q Consensus 207 ~~ 208 (329)
+.
T Consensus 164 n~ 165 (323)
T KOG1036|consen 164 NL 165 (323)
T ss_pred cc
Confidence 54
No 179
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.19 E-value=2.4e+02 Score=25.00 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCc
Q 020245 98 LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGP 177 (329)
Q Consensus 98 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 177 (329)
...+-.||+..++ +.+......-.+.+.-+.+.-++.||+ |-. ...+..||..+.+---..-.+ ..+ ...
T Consensus 225 ~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~-gn~-----~g~l~~FD~r~~kl~g~~~kg--~tG-sir 294 (412)
T KOG3881|consen 225 YHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT-GNT-----KGQLAKFDLRGGKLLGCGLKG--ITG-SIR 294 (412)
T ss_pred ceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEE-ecc-----cchhheecccCceeeccccCC--ccC-Ccc
Confidence 4567788887654 333222111122332222222334443 332 256788998877643332111 011 111
Q ss_pred EEEEEC-CEEEEEeeeCCCCcccEEEEeCCC
Q 020245 178 GLIVTQ-GKIWVVYGFAGVEVDDVHCFDPAH 207 (329)
Q Consensus 178 ~~~~~~-~~l~v~gG~~~~~~~~~~~~d~~~ 207 (329)
....+. ..+...+|.+ ..+-+||.++
T Consensus 295 sih~hp~~~~las~GLD----RyvRIhD~kt 321 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCGLD----RYVRIHDIKT 321 (412)
T ss_pred eEEEcCCCceEEeeccc----eeEEEeeccc
Confidence 112222 3466666654 4566677755
No 180
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=42.52 E-value=1.3e+02 Score=27.22 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=30.0
Q ss_pred CCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE---CCEEEEEcCcc
Q 020245 183 QGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI---GKHIVVYGGEV 242 (329)
Q Consensus 183 ~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~---~~~i~i~GG~~ 242 (329)
.+.-++..+++ ..+-.+|.++++-...-..+..| .++.+ +.+++++||.+
T Consensus 269 ~g~~fLS~sfD----~~lKlwDtETG~~~~~f~~~~~~------~cvkf~pd~~n~fl~G~sd 321 (503)
T KOG0282|consen 269 CGTSFLSASFD----RFLKLWDTETGQVLSRFHLDKVP------TCVKFHPDNQNIFLVGGSD 321 (503)
T ss_pred cCCeeeeeecc----eeeeeeccccceEEEEEecCCCc------eeeecCCCCCcEEEEecCC
Confidence 45566767765 45666788887766544333222 23322 34999999974
No 181
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=42.51 E-value=2.3e+02 Score=26.22 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=53.0
Q ss_pred CCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCC
Q 020245 143 GVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTA 222 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~ 222 (329)
+...+++.+..+|+.++.--.-.+.. ...+..+....+.+.+++|..+...-.+...|+.+-.-..-.. ..
T Consensus 369 d~~~~ls~LvllD~~tg~~l~~S~~~----~Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~kes~-----~~ 439 (489)
T PF05262_consen 369 DPNHYLSELVLLDSDTGDTLKRSPVN----GIRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKESE-----DE 439 (489)
T ss_pred cCCCcceeEEEEeCCCCceecccccc----eeccceeEEcCCCEEEEeccCCchheEEEecCcccceeeeecc-----cc
Confidence 44557789999999998755555542 2333444566777888888866555566666777766555442 12
Q ss_pred ccee-EEEEECCEEEEEc
Q 020245 223 RSVF-STVGIGKHIVVYG 239 (329)
Q Consensus 223 r~~~-~~~~~~~~i~i~G 239 (329)
.+.. .+...++.+|++-
T Consensus 440 i~~~S~l~~~~~~iyaVv 457 (489)
T PF05262_consen 440 ISWQSSLIVDGQMIYAVV 457 (489)
T ss_pred ccccCceEEcCCeEEEEE
Confidence 2222 3334455666543
No 182
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.20 E-value=2.6e+02 Score=25.19 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=48.6
Q ss_pred cEEEEeCCCC---ceEEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCC
Q 020245 199 DVHCFDPAHA---QWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDG 275 (329)
Q Consensus 199 ~~~~~d~~~~---~w~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 275 (329)
.++.||.... .|+...-. .+-.+-+.......++..++... .-++|.++...-+-.....
T Consensus 353 ~v~~~D~R~~~~~vwt~~AHd----~~ISgl~~n~~~p~~l~t~s~d~------------~Vklw~~~~~~~~~v~~~~- 415 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLKAHD----DEISGLSVNIQTPGLLSTASTDK------------VVKLWKFDVDSPKSVKEHS- 415 (463)
T ss_pred eEEeeecCCCCCceeEEEecc----CCcceEEecCCCCcceeeccccc------------eEEEEeecCCCCccccccc-
Confidence 5666776544 56554432 12222222222335555555422 3578888887776655555
Q ss_pred CCCCCCCCCCCcceecccccCCcceEEEEcCCCC
Q 020245 276 PGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSP 309 (329)
Q Consensus 276 ~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~~~ 309 (329)
+...|.. +++...-. ..+|++||...
T Consensus 416 -----~~~~rl~-c~~~~~~~--a~~la~GG~k~ 441 (463)
T KOG0270|consen 416 -----FKLGRLH-CFALDPDV--AFTLAFGGEKA 441 (463)
T ss_pred -----cccccee-ecccCCCc--ceEEEecCccc
Confidence 7778843 34444444 77999999653
No 183
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.39 E-value=2.9e+02 Score=25.51 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=56.4
Q ss_pred CCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeE
Q 020245 82 GHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 161 (329)
Q Consensus 82 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W 161 (329)
+..++|.-|.. .++.++++++...+....-..+...+--+++..++-=.+-|..+ ..+.+|+..++..
T Consensus 212 d~nliit~Gk~-------H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~-----G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 212 DPNLIITCGKG-------HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG-----GNILIWSKGTNRI 279 (626)
T ss_pred CCcEEEEeCCc-------eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC-----ceEEEEeCCCceE
Confidence 34555555544 68888888887655544422233322222222222222333322 4678888888776
Q ss_pred EEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEe
Q 020245 162 IQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFD 204 (329)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d 204 (329)
++-.-. ....-.++++.++-..+.||.+ ..+..+|
T Consensus 280 ~k~~~a----H~ggv~~L~~lr~GtllSGgKD----Rki~~Wd 314 (626)
T KOG2106|consen 280 SKQVHA----HDGGVFSLCMLRDGTLLSGGKD----RKIILWD 314 (626)
T ss_pred EeEeee----cCCceEEEEEecCccEeecCcc----ceEEecc
Confidence 654442 4556667777765555558765 4566666
No 184
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=41.16 E-value=74 Score=18.57 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=16.5
Q ss_pred EeccCCCCCCCCcceeEEEECCEEEEEcC
Q 020245 10 KLDQKGSGPGARSSHAITIVGQKVYAFGG 38 (329)
Q Consensus 10 ~~~~~~~~p~~r~~~~~~~~~~~l~~~GG 38 (329)
+|.+....+..+.+.++++.++.+ ++|-
T Consensus 6 kL~a~d~~~~d~FG~sVai~gd~~-vVGA 33 (49)
T PF14312_consen 6 KLTASDGAAGDYFGWSVAISGDTL-VVGA 33 (49)
T ss_pred EEECCCCCccCcceeEEEEeCCEE-EEee
Confidence 455444445567777777777764 4454
No 185
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=40.99 E-value=1.9e+02 Score=24.29 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=40.1
Q ss_pred EEECCEEEEEccccCCCC-CCCceEEEECC-CCcEEEcccCCCCCCCcccceeEeeCCeEEEEccc
Q 020245 79 AAVGHTIYMFGGRDGTHK-ELNELYSFDTR-TNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGC 142 (329)
Q Consensus 79 ~~~~~~iyv~GG~~~~~~-~~~~~~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 142 (329)
...+++.+|+|-...... ..+.|..|.-. ..+|+.++... -........+.+++.+ ++||.
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~--~~~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAP--VFQLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT-----BS-EEEEEEEETTEE-EEEEE
T ss_pred eeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcc--eEEecCcceeeECCEE-EEeeE
Confidence 457889999998775555 67788888776 88999998753 2346666777788887 67883
No 186
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.82 E-value=2.8e+02 Score=25.07 Aligned_cols=120 Identities=12% Similarity=0.188 Sum_probs=62.8
Q ss_pred cccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEE
Q 020245 124 RSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHC 202 (329)
Q Consensus 124 r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~ 202 (329)
...++++.+ ++.|+..|-.+ ..+-.||+++++ .+...+ +....--+....++--|+.-+.++ ..+..
T Consensus 348 v~~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fp--ght~~vk~i~FsENGY~Lat~add---~~V~l 415 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFP--GHTGPVKAISFSENGYWLATAADD---GSVKL 415 (506)
T ss_pred ceeEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCC--CCCCceeEEEeccCceEEEEEecC---CeEEE
Confidence 445555555 44555544332 457788888877 555553 111111222233343444444332 24777
Q ss_pred EeCCCCc-eEEeeccCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecC
Q 020245 203 FDPAHAQ-WAQVETSGEKPTARSVFSTVGI--GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 203 ~d~~~~~-w~~~~~~~~~p~~r~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
+|+...+ .+.+.. +... ......+ .+..++++|. .-.|+.++-.+..|+++..
T Consensus 416 wDLRKl~n~kt~~l----~~~~-~v~s~~fD~SGt~L~~~g~--------------~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQL----DEKK-EVNSLSFDQSGTYLGIAGS--------------DLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEehhhcccceeec----cccc-cceeEEEcCCCCeEEeecc--------------eeEEEEEecccccceeeeh
Confidence 8875443 333321 1211 2223333 3466666664 2368889999999999987
No 187
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=38.69 E-value=2.5e+02 Score=23.99 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=58.4
Q ss_pred eCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEE-CCEEEEEeeeCCCCcccEEEEeCCCCce
Q 020245 132 DDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVT-QGKIWVVYGFAGVEVDDVHCFDPAHAQW 210 (329)
Q Consensus 132 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~l~v~gG~~~~~~~~~~~~d~~~~~w 210 (329)
.+..=.+.||.+ ..+-+||+.+..=..+..-. ....++... ....+|.||++ ..+-.+|+....-
T Consensus 63 ~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~-----~~i~ci~~~~~~~~vIsgsWD----~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 63 ADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHD-----EGIRCIEYSYEVGCVISGSWD----KTIKFWDPRNKVV 128 (323)
T ss_pred cCCceEEEeccC-----ceEEEEEecCCcceeeccCC-----CceEEEEeeccCCeEEEcccC----ccEEEEecccccc
Confidence 344455667765 46889999998877777653 222233332 23466778877 5777788865111
Q ss_pred EEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCce
Q 020245 211 AQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLV 268 (329)
Q Consensus 211 ~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 268 (329)
.. ..-.+..-+++ .+.+..+|+|+. -..+..||+.+..
T Consensus 129 --~~---~~d~~kkVy~~-~v~g~~LvVg~~--------------~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 129 --VG---TFDQGKKVYCM-DVSGNRLVVGTS--------------DRKVLIYDLRNLD 166 (323)
T ss_pred --cc---ccccCceEEEE-eccCCEEEEeec--------------CceEEEEEccccc
Confidence 11 11122233444 345555556664 2468888887653
No 188
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=35.82 E-value=3.4e+02 Score=25.16 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=42.8
Q ss_pred CCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCC
Q 020245 94 THKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSA 167 (329)
Q Consensus 94 ~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~ 167 (329)
+...++.++.+|+.+..=-.-++.. ...+..+...++.+.+++|..+... -.+...|+.+-...+-...
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~~~----~Ir~r~~~~~~~~~vaI~g~~G~~~-ikLvlid~~tLev~kes~~ 438 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSPVN----GIRGRTFYEREDDLVAIAGCSGNAA-IKLVLIDPETLEVKKESED 438 (489)
T ss_pred CCCcceeEEEEeCCCCceecccccc----eeccceeEEcCCCEEEEeccCCchh-eEEEecCcccceeeeeccc
Confidence 4567889999999997644444432 2223444456888999999844432 2344456777666555554
No 189
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=35.44 E-value=3.1e+02 Score=24.11 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=78.5
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEE-EeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSV-ADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRT 108 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 108 (329)
++.+.+.||.+ +.-+.++..+..|-- +... .--.-......++.+...|+.. ..+.+|+..+
T Consensus 75 ~~~l~aTGGgD-------D~AflW~~~~ge~~~eltgH----KDSVt~~~FshdgtlLATGdms------G~v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGGD-------DLAFLWDISTGEFAGELTGH----KDSVTCCSFSHDGTLLATGDMS------GKVLVFKVST 137 (399)
T ss_pred CCceEEecCCC-------ceEEEEEccCCcceeEecCC----CCceEEEEEccCceEEEecCCC------ccEEEEEccc
Confidence 66888888854 456788888888532 2211 1122233344567777777655 4566666554
Q ss_pred C--cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEE
Q 020245 109 N--QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKI 186 (329)
Q Consensus 109 ~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l 186 (329)
+ +|......... .-...|- ...|+++|-.+ .++|.|.+.++.-.++-.- ...+....-..-+++.
T Consensus 138 g~~~~~~~~e~~di-eWl~WHp----~a~illAG~~D-----GsvWmw~ip~~~~~kv~~G---h~~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDI-EWLKWHP----RAHILLAGSTD-----GSVWMWQIPSQALCKVMSG---HNSPCTCGEFIPDGKR 204 (399)
T ss_pred CceEEEeecccCce-EEEEecc----cccEEEeecCC-----CcEEEEECCCcceeeEecC---CCCCcccccccCCCce
Confidence 4 56554222111 0000000 23466665543 4689999888744443332 1222233333456777
Q ss_pred EEEeeeCCCCcccEEEEeCCCCc
Q 020245 187 WVVYGFAGVEVDDVHCFDPAHAQ 209 (329)
Q Consensus 187 ~v~gG~~~~~~~~~~~~d~~~~~ 209 (329)
.+.|-.+ ..+..+|+.+.+
T Consensus 205 ~~tgy~d----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 205 ILTGYDD----GTIIVWNPKTGQ 223 (399)
T ss_pred EEEEecC----ceEEEEecCCCc
Confidence 7766433 467778887764
No 190
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=35.22 E-value=4.1e+02 Score=25.45 Aligned_cols=214 Identities=14% Similarity=0.110 Sum_probs=102.0
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCCCceEEEECCCCcEE-EcccCCCCCCCcc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHKELNELYSFDTRTNQWT-LLSNGDAGPPHRS 125 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~p~~r~ 125 (329)
..++.|++.. .|...+... .|..|+--+.+-. +++||-.|+.+ .+-.+|+.+.+=. .+...+ .+..
T Consensus 47 g~IEiwN~~~-~w~~~~vi~-g~~drsIE~L~W~e~~RLFS~g~sg-------~i~EwDl~~lk~~~~~d~~g---g~IW 114 (691)
T KOG2048|consen 47 GNIEIWNLSN-NWFLEPVIH-GPEDRSIESLAWAEGGRLFSSGLSG-------SITEWDLHTLKQKYNIDSNG---GAIW 114 (691)
T ss_pred CcEEEEccCC-CceeeEEEe-cCCCCceeeEEEccCCeEEeecCCc-------eEEEEecccCceeEEecCCC---ccee
Confidence 6799999985 687766644 3566655555544 78899888765 5556666544311 111110 0011
Q ss_pred cceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEE-EEeeeCCCCcccEEEEe
Q 020245 126 YHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIW-VVYGFAGVEVDDVHCFD 204 (329)
Q Consensus 126 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~-v~gG~~~~~~~~~~~~d 204 (329)
. .+..-.+....+|-.++ .++.++...++-+.-..++ ......-.+..+.... ++||..+ ..+-++|
T Consensus 115 s-iai~p~~~~l~IgcddG-----vl~~~s~~p~~I~~~r~l~---rq~sRvLslsw~~~~~~i~~Gs~D---g~Iriwd 182 (691)
T KOG2048|consen 115 S-IAINPENTILAIGCDDG-----VLYDFSIGPDKITYKRSLM---RQKSRVLSLSWNPTGTKIAGGSID---GVIRIWD 182 (691)
T ss_pred E-EEeCCccceEEeecCCc-----eEEEEecCCceEEEEeecc---cccceEEEEEecCCccEEEecccC---ceEEEEE
Confidence 1 11111224444442211 3344444444444444442 1111122223444433 5566433 2466677
Q ss_pred CCCCceEEeeccCCCCCCc----ceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCC
Q 020245 205 PAHAQWAQVETSGEKPTAR----SVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDH 280 (329)
Q Consensus 205 ~~~~~w~~~~~~~~~p~~r----~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~ 280 (329)
....+--.+.++...-..+ ..-++..+.+..++.|.. ...|...|....+-.+--.
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS--------------~G~V~FWd~~~gTLiqS~~------ 242 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS--------------AGTVTFWDSIFGTLIQSHS------ 242 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecC--------------CceEEEEcccCcchhhhhh------
Confidence 6555544433332111222 122344556666676654 3467778877664332221
Q ss_pred CCCCCCcceecccccCCcceEEEEcCCCC
Q 020245 281 HPGPRGWCAFAGGLRGGKHGLLVYGGNSP 309 (329)
Q Consensus 281 ~p~~r~~~~~~~~~~~~~~~i~i~GG~~~ 309 (329)
....-. .++++-++ ..-++.+|.+.
T Consensus 243 ~h~adV---l~Lav~~~-~d~vfsaGvd~ 267 (691)
T KOG2048|consen 243 CHDADV---LALAVADN-EDRVFSAGVDP 267 (691)
T ss_pred hhhcce---eEEEEcCC-CCeEEEccCCC
Confidence 112222 45555554 34566666664
No 191
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.49 E-value=2.6e+02 Score=22.64 Aligned_cols=161 Identities=15% Similarity=0.186 Sum_probs=88.3
Q ss_pred eEEEECCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEE
Q 020245 25 AITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSF 104 (329)
Q Consensus 25 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 104 (329)
.+...++++|...|... .+.+.++|+.+.+-..-... .|....+-..+..++.+|.+--.. .-.+.|
T Consensus 50 GL~~~~g~i~esTG~yg-----~S~ir~~~L~~gq~~~s~~l--~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~ 116 (262)
T COG3823 50 GLEYLDGHILESTGLYG-----FSKIRVSDLTTGQEIFSEKL--APDTVFGEGITKLGDYFYQLTWKE------GVAFKY 116 (262)
T ss_pred ceeeeCCEEEEeccccc-----cceeEEEeccCceEEEEeec--CCccccccceeeccceEEEEEecc------ceeEEE
Confidence 34455778888877654 26788999886553222221 123456667888999999875333 245667
Q ss_pred ECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCC---eEEEecCCCCCCCCCCCcEEEE
Q 020245 105 DTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDR---KWIQYPSAGENCKGRGGPGLIV 181 (329)
Q Consensus 105 d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~---~W~~~~~~~~~~~~~~~~~~~~ 181 (329)
|..+- +.+... +.+-.+-.++.-+..+.+--|. ..+.--||++- .=.+++..+.+ -+--...-.
T Consensus 117 d~~t~--~~lg~~---~y~GeGWgLt~d~~~LimsdGs------atL~frdP~tfa~~~~v~VT~~g~p--v~~LNELE~ 183 (262)
T COG3823 117 DADTL--EELGRF---SYEGEGWGLTSDDKNLIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVP--VSKLNELEW 183 (262)
T ss_pred ChHHh--hhhccc---ccCCcceeeecCCcceEeeCCc------eEEEecCHHHhhhcceEEEEECCee--cccccceee
Confidence 76553 233322 3445566677777777776663 23333355432 11222222110 111112234
Q ss_pred ECCEEEEEeeeCCCCcccEEEEeCCCCc---eEEeec
Q 020245 182 TQGKIWVVYGFAGVEVDDVHCFDPAHAQ---WAQVET 215 (329)
Q Consensus 182 ~~~~l~v~gG~~~~~~~~~~~~d~~~~~---w~~~~~ 215 (329)
+++.+|.--- ..+++.+.|+++.+ |..++.
T Consensus 184 VdG~lyANVw----~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 184 VDGELYANVW----QTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred eccEEEEeee----eecceEEEcCCCCcEEEEEEccC
Confidence 5666665322 33788999998874 666653
No 192
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=32.92 E-value=3.1e+02 Score=23.29 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=44.8
Q ss_pred CCEEEEE-cCccCCCC----ccCCceEEEeCCCCcE-EEEeeCCCCCCCCcceeEEEEC--------CEEEEEccccCCC
Q 020245 30 GQKVYAF-GGEFTPRV----PVDNNLHVFDLETLTW-SVADVTGDVPPPRVGVTMAAVG--------HTIYMFGGRDGTH 95 (329)
Q Consensus 30 ~~~l~~~-GG~~~~~~----~~~~~~~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~~~--------~~iyv~GG~~~~~ 95 (329)
.++|+|+ .|.-.... .....+..||+.+++- +++..+.....+.+...-.+++ ..+||. +
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt------D 84 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT------D 84 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE------E
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe------C
Confidence 4689998 34322111 3447899999999985 3333333233344444444433 257774 3
Q ss_pred CCCCceEEEECCCCc-EEEccc
Q 020245 96 KELNELYSFDTRTNQ-WTLLSN 116 (329)
Q Consensus 96 ~~~~~~~~~d~~~~~-W~~~~~ 116 (329)
.....+.+||..+++ |+.+..
T Consensus 85 ~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 85 SGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp TTTCEEEEEETTTTEEEEEETC
T ss_pred CCcCcEEEEEccCCcEEEEecC
Confidence 334589999999875 554443
No 193
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=32.48 E-value=3.3e+02 Score=23.46 Aligned_cols=216 Identities=14% Similarity=0.093 Sum_probs=110.6
Q ss_pred CceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCCc-EEEcccC-CCCCCCcc
Q 020245 48 NNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQ-WTLLSNG-DAGPPHRS 125 (329)
Q Consensus 48 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~-~~~p~~r~ 125 (329)
+.++++|+.+.+-+....+ .........-.++.|+.. ...+..+++.+.. ++.+... ...+..|.
T Consensus 47 ~~i~r~~~~~g~~~~~~~p----~~~~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSP----GGFSSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred CeEEEecCCcCceEEEECC----CCcccceeecCCCeEEEE---------ccccEEEeccCCceeEEeccccCCCCcCCC
Confidence 6788888876665555543 222222222233445543 2346667765433 3555544 23355677
Q ss_pred cceeEeeCCeEEEEccc------CCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECC-EEEEEeeeCCCCcc
Q 020245 126 YHSTAADDRHVYIFGGC------GVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQG-KIWVVYGFAGVEVD 198 (329)
Q Consensus 126 ~~~~~~~~~~i~v~GG~------~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~l~v~gG~~~~~~~ 198 (329)
.=..+.-++.+|+---. ........+|++++. ...+++.... ....+.-+..-++ .+|+.- ...+
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~---~~~~NGla~SpDg~tly~aD----T~~~ 185 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDD---LTIPNGLAFSPDGKTLYVAD----TPAN 185 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCc---EEecCceEECCCCCEEEEEe----CCCC
Confidence 77777777777764222 122345689999984 4444444431 1122222223344 577653 2447
Q ss_pred cEEEEeCCCCce-----EEeeccCCCCCCcceeEEEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeec
Q 020245 199 DVHCFDPAHAQW-----AQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWD 273 (329)
Q Consensus 199 ~~~~~d~~~~~w-----~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 273 (329)
.+++|+.+..+- ...... .....+-.-.++--++.+++...-. -..|.+|+++...-.++.
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~-~~~~G~PDG~~vDadG~lw~~a~~~-------------g~~v~~~~pdG~l~~~i~ 251 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDF-DEEPGLPDGMAVDADGNLWVAAVWG-------------GGRVVRFNPDGKLLGEIK 251 (307)
T ss_pred eEEEEecCcccCccCCcceEEEc-cCCCCCCCceEEeCCCCEEEecccC-------------CceEEEECCCCcEEEEEE
Confidence 888888753100 000000 1112333334445577888643311 137999999966666666
Q ss_pred CCCCCCCCCCCCCcceecccccCC--cceEEEEcCCCC
Q 020245 274 DGPGSDHHPGPRGWCAFAGGLRGG--KHGLLVYGGNSP 309 (329)
Q Consensus 274 ~~~~~~~~p~~r~~~~~~~~~~~~--~~~i~i~GG~~~ 309 (329)
+|..+. +++...+ .+.|||..-...
T Consensus 252 -------lP~~~~----t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 252 -------LPVKRP----TNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred -------CCCCCC----ccceEeCCCcCEEEEEecCCC
Confidence 354332 2222222 156888876653
No 194
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=31.86 E-value=3e+02 Score=22.90 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=64.3
Q ss_pred cceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeE
Q 020245 148 LNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFS 227 (329)
Q Consensus 148 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~ 227 (329)
..++-.+|..+++-.+--..+ .+... .-+..++.++.+.-. ..+-.+|..+ ...+... .+|......
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~---s~VtS-lEvs~dG~ilTia~g-----ssV~Fwdaks--f~~lKs~-k~P~nV~SA- 230 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFN---SPVTS-LEVSQDGRILTIAYG-----SSVKFWDAKS--FGLLKSY-KMPCNVESA- 230 (334)
T ss_pred CCceEEEEeccCcEEEEEecC---CCCcc-eeeccCCCEEEEecC-----ceeEEecccc--ccceeec-cCccccccc-
Confidence 367888888888754444332 22211 123345666555421 3555666644 3333321 444333211
Q ss_pred EEEECCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCceeEeecCCCCCCCCCCCCCcceecccccCCcceEEEEcCC
Q 020245 228 TVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGN 307 (329)
Q Consensus 228 ~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~~i~i~GG~ 307 (329)
..--+..+||.||.+ ..+++||-.+..=...-. ....-.- |+.-...+ +-+|..|..
T Consensus 231 SL~P~k~~fVaGged--------------~~~~kfDy~TgeEi~~~n------kgh~gpV--hcVrFSPd-GE~yAsGSE 287 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGED--------------FKVYKFDYNTGEEIGSYN------KGHFGPV--HCVRFSPD-GELYASGSE 287 (334)
T ss_pred cccCCCceEEecCcc--------------eEEEEEeccCCceeeecc------cCCCCce--EEEEECCC-CceeeccCC
Confidence 112255899999963 367888877664322211 1111122 34444444 559999987
Q ss_pred CCC
Q 020245 308 SPS 310 (329)
Q Consensus 308 ~~~ 310 (329)
+++
T Consensus 288 DGT 290 (334)
T KOG0278|consen 288 DGT 290 (334)
T ss_pred Cce
Confidence 753
No 195
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=30.77 E-value=3.8e+02 Score=23.65 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=44.2
Q ss_pred CCEEEEEcCccC--CCCccCCceEEEeCCCCcEE-EEeeCCCCCCCC-------cceeEEEECCEEEEEccccCCCCCCC
Q 020245 30 GQKVYAFGGEFT--PRVPVDNNLHVFDLETLTWS-VADVTGDVPPPR-------VGVTMAAVGHTIYMFGGRDGTHKELN 99 (329)
Q Consensus 30 ~~~l~~~GG~~~--~~~~~~~~~~~~d~~~~~W~-~~~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~ 99 (329)
+..||+.-.+.. ....-.+.+..||+.+.+-. +++.. +.|| ...+....+..+||. +....+
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p---~~p~~~~~~~~~~~~ls~dgk~l~V~-----n~~p~~ 128 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP---EGPRFLVGTYPWMTSLTPDNKTLLFY-----QFSPSP 128 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC---CCchhhccCccceEEECCCCCEEEEe-----cCCCCC
Confidence 447888776321 11222378999999987753 33332 2223 122222334568886 445577
Q ss_pred ceEEEECCCCcEEE
Q 020245 100 ELYSFDTRTNQWTL 113 (329)
Q Consensus 100 ~~~~~d~~~~~W~~ 113 (329)
.+-++|..+++-..
T Consensus 129 ~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 129 AVGVVDLEGKAFVR 142 (352)
T ss_pred EEEEEECCCCcEEE
Confidence 88899988876543
No 196
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=30.42 E-value=3.7e+02 Score=23.51 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=29.2
Q ss_pred EEEEEcCccCCCCccCCceEEEeCCCCcEEE-EeeCCCCCCCCcceeEEEECCEEEEEcccc
Q 020245 32 KVYAFGGEFTPRVPVDNNLHVFDLETLTWSV-ADVTGDVPPPRVGVTMAAVGHTIYMFGGRD 92 (329)
Q Consensus 32 ~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 92 (329)
.+||+-- ....+|-+.|+..++... ++. |-..+..-.-++.++.++|.+
T Consensus 108 ~~~V~N~------TPa~SVtVVDl~~~kvv~ei~~------PGC~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 108 FLYVQNF------TPATSVTVVDLAAKKVVGEIDT------PGCWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp EEEEEEE------SSSEEEEEEETTTTEEEEEEEG------TSEEEEEEEETTEEEEEETTS
T ss_pred EEEEEcc------CCCCeEEEEECCCCceeeeecC------CCEEEEEecCCCceEEEecCC
Confidence 5666542 123789999999887643 333 222333334466777777765
No 197
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=28.97 E-value=2.9e+02 Score=21.80 Aligned_cols=67 Identities=9% Similarity=0.271 Sum_probs=41.6
Q ss_pred CcceeEEEEcCCCeEEEecCCCCCCCCCCCc-EEE-EECCEEEEEeeeC-CC--CcccEEEEeCCCCceEEeec
Q 020245 147 RLNDLWGFDVVDRKWIQYPSAGENCKGRGGP-GLI-VTQGKIWVVYGFA-GV--EVDDVHCFDPAHAQWAQVET 215 (329)
Q Consensus 147 ~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~~-~~~~~l~v~gG~~-~~--~~~~~~~~d~~~~~w~~~~~ 215 (329)
-...+|.+|..++.|..+...+.. ..+.+ -+. .-+..|.|+-|+. |. .-..++.|++.++.-+.+..
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~--~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNE--EKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcc--cccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 467899999999988777544311 11111 122 3344455544432 33 34789999999999888874
No 198
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=27.70 E-value=2.7e+02 Score=25.38 Aligned_cols=107 Identities=15% Similarity=0.117 Sum_probs=51.5
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTN 109 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 109 (329)
..+|++.+|.+ ..|+.|+..... ..+.+...--.+.. ..+-.-.+.-|+-.|++ ..+-.+|.+|+
T Consensus 226 ~~hLlLS~gmD-------~~vklW~vy~~~-~~lrtf~gH~k~Vr-d~~~s~~g~~fLS~sfD------~~lKlwDtETG 290 (503)
T KOG0282|consen 226 KGHLLLSGGMD-------GLVKLWNVYDDR-RCLRTFKGHRKPVR-DASFNNCGTSFLSASFD------RFLKLWDTETG 290 (503)
T ss_pred eeeEEEecCCC-------ceEEEEEEecCc-ceehhhhcchhhhh-hhhccccCCeeeeeecc------eeeeeeccccc
Confidence 45788888864 456666655422 22222110001111 11111223444544444 45666788888
Q ss_pred cEEEcccCCCCCCCcccceeEee-CCeEEEEcccCCCcCcceeEEEEcCCCe
Q 020245 110 QWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRK 160 (329)
Q Consensus 110 ~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 160 (329)
+-...-..+..| .+.-..- +.+++++||.+. .+-.||+.+++
T Consensus 291 ~~~~~f~~~~~~----~cvkf~pd~~n~fl~G~sd~-----ki~~wDiRs~k 333 (503)
T KOG0282|consen 291 QVLSRFHLDKVP----TCVKFHPDNQNIFLVGGSDK-----KIRQWDIRSGK 333 (503)
T ss_pred eEEEEEecCCCc----eeeecCCCCCcEEEEecCCC-----cEEEEeccchH
Confidence 654332222111 1111112 348999999764 46677776654
No 199
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=27.68 E-value=5.8e+02 Score=24.83 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=44.6
Q ss_pred CCeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEE
Q 020245 133 DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQ 212 (329)
Q Consensus 133 ~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~ 212 (329)
.+.-|++.|..+ .++-.+|..++.-.++-.. +.+.-.++++.-...|+..|.. -..+..||+.+..--
T Consensus 545 PNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~G----H~~~V~al~~Sp~Gr~LaSg~e---d~~I~iWDl~~~~~v- 612 (707)
T KOG0263|consen 545 PNSNYVATGSSD----RTVRLWDVSTGNSVRIFTG----HKGPVTALAFSPCGRYLASGDE---DGLIKIWDLANGSLV- 612 (707)
T ss_pred CcccccccCCCC----ceEEEEEcCCCcEEEEecC----CCCceEEEEEcCCCceEeeccc---CCcEEEEEcCCCcch-
Confidence 345555555332 4566666666654444322 2333344444444444443322 256777887654221
Q ss_pred eeccCCCCCCcceeEEEEECCEEEEEcCcc
Q 020245 213 VETSGEKPTARSVFSTVGIGKHIVVYGGEV 242 (329)
Q Consensus 213 ~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~ 242 (329)
...-.. ..-.+.-....++.+++.||.+
T Consensus 613 -~~l~~H-t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 613 -KQLKGH-TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred -hhhhcc-cCceeEEEEecCCCEEEecCCC
Confidence 110011 1111111224478899999863
No 200
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.27 E-value=5.6e+02 Score=24.63 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=37.8
Q ss_pred ECCEEEEEeeeCCCCcccEEEEeCCCCceEE------eeccCCCC-CCcc-eeEEEEE-CCEEEEEcCccCCCCCCcCCC
Q 020245 182 TQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQ------VETSGEKP-TARS-VFSTVGI-GKHIVVYGGEVDPSDLGHLGA 252 (329)
Q Consensus 182 ~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~------~~~~~~~p-~~r~-~~~~~~~-~~~i~i~GG~~~~~~~~~~~~ 252 (329)
-++.+++.||.+ ..|..||..+..-+. +... .++ .++. -++.++- .+.|++-||.
T Consensus 128 k~~~lvaSgGLD----~~IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~t~t~ivsGgt----------- 191 (735)
T KOG0308|consen 128 KNNELVASGGLD----RKIFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIYSLAMNQTGTIIVSGGT----------- 191 (735)
T ss_pred cCceeEEecCCC----ccEEEEEccCcchhhhhhccccccc-cCCCCCccceeeeecCCcceEEEecCc-----------
Confidence 356788888877 577777776543222 2221 222 2232 2233222 2357777875
Q ss_pred CeeeceeEEEEcCCc
Q 020245 253 GKFAGELYSLDTETL 267 (329)
Q Consensus 253 ~~~~~~~~~~d~~~~ 267 (329)
..++..||+.+.
T Consensus 192 ---ek~lr~wDprt~ 203 (735)
T KOG0308|consen 192 ---EKDLRLWDPRTC 203 (735)
T ss_pred ---ccceEEeccccc
Confidence 357888998765
No 201
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=26.67 E-value=4.4e+02 Score=23.12 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=83.4
Q ss_pred EEECCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEE
Q 020245 27 TIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSF 104 (329)
Q Consensus 27 ~~~~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 104 (329)
+..++++|+... ...++.+|+.+.+ |+...... ...........+++||+-.. . ..+++|
T Consensus 65 ~~~dg~v~~~~~--------~G~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~-~------g~~y~l 126 (370)
T COG1520 65 ADGDGTVYVGTR--------DGNIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSW-D------GKLYAL 126 (370)
T ss_pred EeeCCeEEEecC--------CCcEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecc-c------ceEEEE
Confidence 556788888621 1379999999877 75433310 01111122223677776432 2 189999
Q ss_pred ECCC--CcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCC--eEEEecCCCCCCCCCCCcEEE
Q 020245 105 DTRT--NQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDR--KWIQYPSAGENCKGRGGPGLI 180 (329)
Q Consensus 105 d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~--~W~~~~~~~~~~~~~~~~~~~ 180 (329)
|..+ ..|+.-... . .+.....+..++.+|+.- ....++.+|..+. .|+.-...+ . ..+......
T Consensus 127 d~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~ 194 (370)
T COG1520 127 DASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPA 194 (370)
T ss_pred ECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-c-ccccccCce
Confidence 9954 468765544 1 344444555566666653 1156788888765 577555432 1 122222222
Q ss_pred EECCEEEEEeeeCCCCcccEEEEeCCCC--ceEE
Q 020245 181 VTQGKIWVVYGFAGVEVDDVHCFDPAHA--QWAQ 212 (329)
Q Consensus 181 ~~~~~l~v~gG~~~~~~~~~~~~d~~~~--~w~~ 212 (329)
...+.+|+-... . ...++.+|+++. .|..
T Consensus 195 ~~~~~vy~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 195 IASGTVYVGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred eecceEEEecCC--C-cceEEEEEccCCcEeeee
Confidence 455666664321 1 236888988554 5764
No 202
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.14 E-value=2.8e+02 Score=26.49 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=38.5
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEE------EeeCCCCC-CCCc-ceeEEEEC-CEEEEEccccCCCCCCCc
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSV------ADVTGDVP-PPRV-GVTMAAVG-HTIYMFGGRDGTHKELNE 100 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~------~~~~~~~p-~~r~-~~~~~~~~-~~iyv~GG~~~~~~~~~~ 100 (329)
++.+++.||.+ ..++.||..+..-+. ++... ++ .++. -++.+.-+ +.+++-||.. ..
T Consensus 129 ~~~lvaSgGLD-------~~IflWDin~~~~~l~~s~n~~t~~s-l~sG~k~siYSLA~N~t~t~ivsGgte------k~ 194 (735)
T KOG0308|consen 129 NNELVASGGLD-------RKIFLWDINTGTATLVASFNNVTVNS-LGSGPKDSIYSLAMNQTGTIIVSGGTE------KD 194 (735)
T ss_pred CceeEEecCCC-------ccEEEEEccCcchhhhhhcccccccc-CCCCCccceeeeecCCcceEEEecCcc------cc
Confidence 66888889864 678888887553221 22111 22 2222 23333322 2477777665 57
Q ss_pred eEEEECCCCc
Q 020245 101 LYSFDTRTNQ 110 (329)
Q Consensus 101 ~~~~d~~~~~ 110 (329)
+-.||+.+.+
T Consensus 195 lr~wDprt~~ 204 (735)
T KOG0308|consen 195 LRLWDPRTCK 204 (735)
T ss_pred eEEecccccc
Confidence 8888888753
No 203
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.13 E-value=4.4e+02 Score=22.64 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=89.1
Q ss_pred CcceeEEEECCEEEEEcCccC-------CC--------CccCCceEEEeCCCCcEEEEeeCC-CCCCCCcceeEE----E
Q 020245 21 RSSHAITIVGQKVYAFGGEFT-------PR--------VPVDNNLHVFDLETLTWSVADVTG-DVPPPRVGVTMA----A 80 (329)
Q Consensus 21 r~~~~~~~~~~~l~~~GG~~~-------~~--------~~~~~~~~~~d~~~~~W~~~~~~~-~~p~~r~~~~~~----~ 80 (329)
-.+.++.++++.||+ ||.-. .. ...-++|+.||..+.+-+.+=... +-+....+-..- -
T Consensus 37 DTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP 115 (339)
T PF09910_consen 37 DTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDP 115 (339)
T ss_pred ccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCC
Confidence 345566677888886 55421 00 012268899998877644332211 111111111111 1
Q ss_pred ECCEEEEEccccCCCCCCCceEEEECCCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcCCCe
Q 020245 81 VGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRK 160 (329)
Q Consensus 81 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 160 (329)
++++|++.=+ +....--+|..|..+.+-+++... |.. -.+...+..+|-+ ..-..-...+.++|+.+++
T Consensus 116 ~~D~LLlAR~---DGh~nLGvy~ldr~~g~~~~L~~~---ps~---KG~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~ 184 (339)
T PF09910_consen 116 YEDRLLLARA---DGHANLGVYSLDRRTGKAEKLSSN---PSL---KGTLVHDYACFGI--NNFHKGVSGIHCLDLISGK 184 (339)
T ss_pred CcCEEEEEec---CCcceeeeEEEcccCCceeeccCC---CCc---CceEeeeeEEEec--cccccCCceEEEEEccCCe
Confidence 2567887643 234445688889999988888776 332 2233334344433 2223345789999999999
Q ss_pred E--EEecCCCCC----CCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCC
Q 020245 161 W--IQYPSAGEN----CKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 206 (329)
Q Consensus 161 W--~~~~~~~~~----~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~ 206 (329)
| +......+. ...+..-.++...+++|.+-+ .-+...||-
T Consensus 185 ~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r------GGi~vgnP~ 230 (339)
T PF09910_consen 185 WVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR------GGIFVGNPY 230 (339)
T ss_pred EEEEecccccCCCCCceEeeccccEEEEeeeEEEEEe------ccEEEeCCC
Confidence 9 443322211 112223344556667666533 245566664
No 204
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=24.71 E-value=4.5e+02 Score=22.60 Aligned_cols=172 Identities=14% Similarity=0.230 Sum_probs=90.7
Q ss_pred CceEEEeCCCCc-EEEEeeCC-CCCCCCcceeEEEECCEEEEEccc-----cCCCCCCCceEEEECCCCcEEEcccCCCC
Q 020245 48 NNLHVFDLETLT-WSVADVTG-DVPPPRVGVTMAAVGHTIYMFGGR-----DGTHKELNELYSFDTRTNQWTLLSNGDAG 120 (329)
Q Consensus 48 ~~~~~~d~~~~~-W~~~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~~d~~~~~W~~~~~~~~~ 120 (329)
..++.+++.+.. |+.+.... ..+..|.+-..+.-++.+|+---. ....+..-.+|++|+.. ...++-..
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~~~~l~~~--- 160 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-GVVRLLDD--- 160 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-CEEEeecC---
Confidence 446667765333 34444432 355577777777777888775433 21334555899999854 34444332
Q ss_pred CCCcccceeEeeCC-eEEEEcccCCCcCcceeEEEEcCC------Ce--EEEecCCCCCCCCCCCcEEEEECCEEEEEee
Q 020245 121 PPHRSYHSTAADDR-HVYIFGGCGVSGRLNDLWGFDVVD------RK--WIQYPSAGENCKGRGGPGLIVTQGKIWVVYG 191 (329)
Q Consensus 121 p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~------~~--W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG 191 (329)
.....+..+..-++ .+|+. +...+.+++|+... ++ +..... ..++-.-.++-.++.+|+...
T Consensus 161 ~~~~~NGla~SpDg~tly~a-----DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~----~~G~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVA-----DTPANRIHRYDLDPATGPIGGRRGFVDFDE----EPGLPDGMAVDADGNLWVAAV 231 (307)
T ss_pred cEEecCceEECCCCCEEEEE-----eCCCCeEEEEecCcccCccCCcceEEEccC----CCCCCCceEEeCCCCEEEecc
Confidence 12233444444444 66665 33446677776652 11 111111 124444455556788887543
Q ss_pred eCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE-C---CEEEEEcCc
Q 020245 192 FAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI-G---KHIVVYGGE 241 (329)
Q Consensus 192 ~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~-~---~~i~i~GG~ 241 (329)
..+ ..+.+|+++...-.++ .+|.++ .+++.+ + +.|||..-.
T Consensus 232 ~~g---~~v~~~~pdG~l~~~i----~lP~~~--~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 232 WGG---GRVVRFNPDGKLLGEI----KLPVKR--PTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cCC---ceEEEECCCCcEEEEE----ECCCCC--CccceEeCCCcCEEEEEecC
Confidence 322 4889999984444443 334322 222233 2 577776654
No 205
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.27 E-value=5.4e+02 Score=23.36 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=58.7
Q ss_pred ceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCE-EEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeE
Q 020245 149 NDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGK-IWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFS 227 (329)
Q Consensus 149 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~ 227 (329)
.++|.+|..+.+-.++.... +...+-...-+++ |+......+ ..++++++.+..+-+.+.... .... +-
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G--~p~I~~~~~~g~~~~riT~~~---~~~~-~p 331 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGF----GINTSPSWSPDGSKIVFTSDRGG--RPQIYLYDLEGSQVTRLTFSG---GGNS-NP 331 (425)
T ss_pred ccEEEEcCCCCcceecccCC----ccccCccCCCCCCEEEEEeCCCC--CcceEEECCCCCceeEeeccC---CCCc-Cc
Confidence 67999999988855544442 2222333334455 443332222 248999999888877776432 1111 22
Q ss_pred EEEEC-CEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCce-eEeecC
Q 020245 228 TVGIG-KHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLV-WTRWDD 274 (329)
Q Consensus 228 ~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~ 274 (329)
...-+ +.|.+.+ ... +. .++..+|+.+.. |+.+..
T Consensus 332 ~~SpdG~~i~~~~-~~~---------g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 332 VWSPDGDKIVFES-SSG---------GQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred cCCCCCCEEEEEe-ccC---------Cc--eeeEEeccCCCCcEEEccc
Confidence 22233 4555555 211 01 478899997776 877775
No 206
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.05 E-value=7.1e+02 Score=24.27 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=51.5
Q ss_pred CCEEEEEcCccCCCCccCCceEEEeCCCCcEEEEeeCCCCCCCCcceeEEEECCEEEEEccccCCCCCCCceEEEECCCC
Q 020245 30 GQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTN 109 (329)
Q Consensus 30 ~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 109 (329)
.|.-|++.|.. ...|-.+|..++.-.++-. + -..+..+-+....++....|+-+ ..+..||..+.
T Consensus 545 PNs~Y~aTGSs------D~tVRlWDv~~G~~VRiF~-G--H~~~V~al~~Sp~Gr~LaSg~ed------~~I~iWDl~~~ 609 (707)
T KOG0263|consen 545 PNSNYVATGSS------DRTVRLWDVSTGNSVRIFT-G--HKGPVTALAFSPCGRYLASGDED------GLIKIWDLANG 609 (707)
T ss_pred CcccccccCCC------CceEEEEEcCCCcEEEEec-C--CCCceEEEEEcCCCceEeecccC------CcEEEEEcCCC
Confidence 35566666632 2567777877665444332 1 01222222222344444444333 46778888775
Q ss_pred cEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcC
Q 020245 110 QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVV 157 (329)
Q Consensus 110 ~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 157 (329)
+- +..+.. ...--.......++.+++.||.+ +++-.||..
T Consensus 610 ~~--v~~l~~-Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~ 649 (707)
T KOG0263|consen 610 SL--VKQLKG-HTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLT 649 (707)
T ss_pred cc--hhhhhc-ccCceeEEEEecCCCEEEecCCC-----CeEEEEEch
Confidence 31 122200 01111122223588999999976 456666654
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=5.5e+02 Score=22.84 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=18.7
Q ss_pred CeEEEEcccCCCcCcceeEEEEcCCC--eEEEecCC
Q 020245 134 RHVYIFGGCGVSGRLNDLWGFDVVDR--KWIQYPSA 167 (329)
Q Consensus 134 ~~i~v~GG~~~~~~~~~~~~~~~~~~--~W~~~~~~ 167 (329)
..|+.+||... .+.+..||+.+. .|+.-...
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCC
Confidence 36888898543 355666666654 46655444
No 208
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=22.31 E-value=1.2e+02 Score=14.99 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=14.4
Q ss_pred ceeEEEEECCEEEEEcCccC
Q 020245 224 SVFSTVGIGKHIVVYGGEVD 243 (329)
Q Consensus 224 ~~~~~~~~~~~i~i~GG~~~ 243 (329)
.....++++++..++|+.+.
T Consensus 5 ~H~K~~v~D~~~~~iGs~N~ 24 (28)
T smart00155 5 LHTKLMIVDDEIAYIGSANL 24 (28)
T ss_pred EEeEEEEEcCCEEEEeCccC
Confidence 34456778998888898654
No 209
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.97 E-value=7.7e+02 Score=24.30 Aligned_cols=147 Identities=11% Similarity=0.142 Sum_probs=74.3
Q ss_pred CeEEEEcccCCCcCcceeEEEEcCCCeEEEecCCCCCCCCCCCcEEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEe
Q 020245 134 RHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQV 213 (329)
Q Consensus 134 ~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~ 213 (329)
|....+|+.. +..+.+|+-.+++..-.... -..+........++++++.|+-+ .++-.||....-...-
T Consensus 319 GDWiA~g~~k----lgQLlVweWqsEsYVlKQQg---H~~~i~~l~YSpDgq~iaTG~eD----gKVKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 319 GDWIAFGCSK----LGQLLVWEWQSESYVLKQQG---HSDRITSLAYSPDGQLIATGAED----GKVKVWNTQSGFCFVT 387 (893)
T ss_pred CCEEEEcCCc----cceEEEEEeeccceeeeccc---cccceeeEEECCCCcEEEeccCC----CcEEEEeccCceEEEE
Confidence 5566666643 34566665555443322111 11222222233577888888766 4666777654322211
Q ss_pred eccCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCCcCCCCeeeceeEEEEcCCc-eeEeecCCCCCCCCCCCCCccee
Q 020245 214 ETSGEKPTARSVFSTVGI--GKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETL-VWTRWDDGPGSDHHPGPRGWCAF 290 (329)
Q Consensus 214 ~~~~~~p~~r~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~~~~~~~p~~r~~~~~ 290 (329)
- ...-..++++.+ .++.++---. -..|-++|++.- .++.... |.|+.+ .
T Consensus 388 F-----teHts~Vt~v~f~~~g~~llssSL--------------DGtVRAwDlkRYrNfRTft~-------P~p~Qf--s 439 (893)
T KOG0291|consen 388 F-----TEHTSGVTAVQFTARGNVLLSSSL--------------DGTVRAWDLKRYRNFRTFTS-------PEPIQF--S 439 (893)
T ss_pred e-----ccCCCceEEEEEEecCCEEEEeec--------------CCeEEeeeecccceeeeecC-------CCceee--e
Confidence 1 022233333322 3333332211 135677777644 4666765 888875 3
Q ss_pred cccccCCcceEEEEcCCCCCCCcccceEEEecccC
Q 020245 291 AGGLRGGKHGLLVYGGNSPSNDRLDDIYFFTPCLD 325 (329)
Q Consensus 291 ~~~~~~~~~~i~i~GG~~~~~~~~~~v~~~~~~~~ 325 (329)
+.++... +-+++.|+++.- +|++++.++-
T Consensus 440 cvavD~s-GelV~AG~~d~F-----~IfvWS~qTG 468 (893)
T KOG0291|consen 440 CVAVDPS-GELVCAGAQDSF-----EIFVWSVQTG 468 (893)
T ss_pred EEEEcCC-CCEEEeeccceE-----EEEEEEeecC
Confidence 3333322 449999997642 5666665554
No 210
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=21.73 E-value=6.7e+02 Score=23.45 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=38.3
Q ss_pred ECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCCcCCCCeeecee
Q 020245 182 TQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGI--GKHIVVYGGEVDPSDLGHLGAGKFAGEL 259 (329)
Q Consensus 182 ~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~ 259 (329)
.++...++||.+ ..++.|.+....-.+... +...|..-+.+.+ ++.++..|.. ..++
T Consensus 453 ~~~~~vaVGG~D----gkvhvysl~g~~l~ee~~---~~~h~a~iT~vaySpd~~yla~~Da--------------~rkv 511 (603)
T KOG0318|consen 453 PDGSEVAVGGQD----GKVHVYSLSGDELKEEAK---LLEHRAAITDVAYSPDGAYLAAGDA--------------SRKV 511 (603)
T ss_pred CCCCEEEEeccc----ceEEEEEecCCcccceee---eecccCCceEEEECCCCcEEEEecc--------------CCcE
Confidence 456788889876 458888876644322221 1123333445555 4466666653 4578
Q ss_pred EEEEcCCce
Q 020245 260 YSLDTETLV 268 (329)
Q Consensus 260 ~~~d~~~~~ 268 (329)
..||.++..
T Consensus 512 v~yd~~s~~ 520 (603)
T KOG0318|consen 512 VLYDVASRE 520 (603)
T ss_pred EEEEcccCc
Confidence 888887653
No 211
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=21.52 E-value=1.3e+02 Score=15.21 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=11.7
Q ss_pred cceeEEEE-CCEEEEEcC
Q 020245 22 SSHAITIV-GQKVYAFGG 38 (329)
Q Consensus 22 ~~~~~~~~-~~~l~~~GG 38 (329)
..|++++. +++||..|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 35666655 779999984
No 212
>PRK10115 protease 2; Provisional
Probab=20.14 E-value=8.3e+02 Score=23.92 Aligned_cols=216 Identities=8% Similarity=0.018 Sum_probs=104.6
Q ss_pred eEEEE-CCEEEEEcCccCCCCccCCceEEEeCCCCc--EEEEeeCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCCCc
Q 020245 25 AITIV-GQKVYAFGGEFTPRVPVDNNLHVFDLETLT--WSVADVTGDVPPPRVGVTMAAV-GHTIYMFGGRDGTHKELNE 100 (329)
Q Consensus 25 ~~~~~-~~~l~~~GG~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 100 (329)
.++.. +++-+++..... ......+++++++.+.. =..+-... ........... +++..++.. .....+.
T Consensus 176 ~~~w~~D~~~~~y~~~~~-~~~~~~~v~~h~lgt~~~~d~lv~~e~---~~~~~~~~~~s~d~~~l~i~~---~~~~~~~ 248 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHP-VTLLPYQVWRHTIGTPASQDELVYEEK---DDTFYVSLHKTTSKHYVVIHL---ASATTSE 248 (686)
T ss_pred EEEEeeCCCEEEEEEecC-CCCCCCEEEEEECCCChhHCeEEEeeC---CCCEEEEEEEcCCCCEEEEEE---ECCcccc
Confidence 34443 454444443322 11223789999988773 22332211 12222222222 333333332 2334567
Q ss_pred eEEEEC--CCCcEEEcccCCCCCCCcccceeEeeCCeEEEEcccCCCcCcceeEEEEcC-CCeEEEecCCCCCCCCCCCc
Q 020245 101 LYSFDT--RTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVV-DRKWIQYPSAGENCKGRGGP 177 (329)
Q Consensus 101 ~~~~d~--~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~ 177 (329)
++.++. .+..|..+.... .... ......++.+|+.--... ....+...++. ..+|+.+-+.. ....-.
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~ly~~tn~~~--~~~~l~~~~~~~~~~~~~l~~~~---~~~~i~ 319 (686)
T PRK10115 249 VLLLDAELADAEPFVFLPRR--KDHE--YSLDHYQHRFYLRSNRHG--KNFGLYRTRVRDEQQWEELIPPR---ENIMLE 319 (686)
T ss_pred EEEEECcCCCCCceEEEECC--CCCE--EEEEeCCCEEEEEEcCCC--CCceEEEecCCCcccCeEEECCC---CCCEEE
Confidence 888883 234443332221 1112 233345678888754432 23346666766 57888877652 122222
Q ss_pred EEEEECCEEEEEeeeCCCCcccEEEEeCCCCceEEeeccCCCCCCcceeEEEE---EC-CEEEE-EcCccCCCCCCcCCC
Q 020245 178 GLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVG---IG-KHIVV-YGGEVDPSDLGHLGA 252 (329)
Q Consensus 178 ~~~~~~~~l~v~gG~~~~~~~~~~~~d~~~~~w~~~~~~~~~p~~r~~~~~~~---~~-~~i~i-~GG~~~~~~~~~~~~ 252 (329)
.+...++.+++..-.. ....++.++..+.....+. ++.+........ .+ +.+++ +.....
T Consensus 320 ~~~~~~~~l~~~~~~~--g~~~l~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~--------- 384 (686)
T PRK10115 320 GFTLFTDWLVVEERQR--GLTSLRQINRKTREVIGIA----FDDPAYVTWIAYNPEPETSRLRYGYSSMTT--------- 384 (686)
T ss_pred EEEEECCEEEEEEEeC--CEEEEEEEcCCCCceEEec----CCCCceEeeecccCCCCCceEEEEEecCCC---------
Confidence 3445577777765433 2356888887655554443 112222211111 11 33333 233221
Q ss_pred CeeeceeEEEEcCCceeEeecC
Q 020245 253 GKFAGELYSLDTETLVWTRWDD 274 (329)
Q Consensus 253 ~~~~~~~~~~d~~~~~W~~~~~ 274 (329)
...++.||+.+.+|+.+..
T Consensus 385 ---P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 385 ---PDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred ---CCEEEEEECCCCcEEEEEe
Confidence 3579999999888887765
Done!