Query 020246
Match_columns 329
No_of_seqs 186 out of 1380
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3760 Uncharacterized conser 100.0 2.2E-34 4.7E-39 249.1 14.3 164 1-166 1-164 (164)
2 cd04335 PrdX_deacylase This CD 100.0 3.1E-33 6.7E-38 243.1 18.4 155 6-162 2-156 (156)
3 cd04336 YeaK YeaK is an unchar 100.0 3.3E-29 7.2E-34 216.4 18.0 149 6-165 2-153 (153)
4 PRK10670 hypothetical protein; 100.0 2.4E-29 5.2E-34 221.4 17.1 149 7-166 3-157 (159)
5 TIGR00011 YbaK_EbsC ybaK/ebsC 100.0 2.3E-29 5E-34 217.9 16.7 148 7-165 2-152 (152)
6 cd00002 YbaK_deacylase This CD 100.0 7.7E-28 1.7E-32 208.7 16.3 148 6-164 2-152 (152)
7 cd04333 ProX_deacylase This CD 100.0 2.9E-27 6.4E-32 204.0 17.4 140 6-153 2-142 (148)
8 PF04073 tRNA_edit: Aminoacyl- 99.9 9.2E-27 2E-31 194.4 14.5 122 24-151 1-123 (123)
9 COG2606 EbsC Uncharacterized c 99.9 1.6E-24 3.4E-29 190.8 15.7 141 8-154 4-147 (155)
10 cd04332 YbaK_like YbaK-like. 99.9 3.7E-24 8E-29 179.5 14.4 130 18-153 1-131 (136)
11 cd04939 PA2301 PA2301 is an un 99.9 4.4E-23 9.5E-28 178.7 14.1 128 21-154 4-136 (139)
12 cd04334 ProRS-INS INS is an am 99.9 4.2E-22 9.2E-27 174.1 12.7 118 17-141 25-143 (160)
13 PRK09194 prolyl-tRNA synthetas 99.7 8.1E-16 1.8E-20 159.0 13.8 114 21-141 252-365 (565)
14 TIGR00409 proS_fam_II prolyl-t 99.2 7.2E-11 1.6E-15 122.8 11.6 116 19-139 251-368 (568)
15 PRK13169 DNA replication intia 46.6 34 0.00073 29.0 4.3 13 300-317 73-85 (110)
16 PRK09570 rpoH DNA-directed RNA 46.1 20 0.00043 28.7 2.7 44 3-48 18-61 (79)
17 PF01191 RNA_pol_Rpb5_C: RNA p 35.8 17 0.00036 28.7 0.8 45 3-49 15-59 (74)
18 cd03028 GRX_PICOT_like Glutare 33.3 57 0.0012 25.6 3.5 47 121-167 2-48 (90)
19 KOG3857 Alcohol dehydrogenase, 33.1 1.6E+02 0.0035 30.3 7.3 81 6-108 88-173 (465)
20 PRK14563 ribosome modulation f 29.1 16 0.00036 27.3 -0.2 21 308-328 10-31 (55)
21 COG2875 CobM Precorrin-4 methy 26.4 1.1E+02 0.0024 29.5 4.7 45 9-55 96-142 (254)
22 PF06156 DUF972: Protein of un 25.4 1.2E+02 0.0026 25.4 4.2 16 297-317 73-88 (107)
23 PRK14039 ADP-dependent glucoki 24.6 1E+02 0.0022 32.2 4.4 69 1-73 282-350 (453)
24 TIGR02045 P_fruct_ADP ADP-spec 24.1 1.3E+02 0.0029 31.3 5.2 75 1-79 280-357 (446)
25 COG2012 RPB5 DNA-directed RNA 23.9 80 0.0017 25.4 2.7 43 4-48 22-64 (80)
26 PF04957 RMF: Ribosome modulat 23.5 18 0.0004 27.0 -0.8 21 308-328 10-31 (55)
27 cd02977 ArsC_family Arsenate R 21.9 1.6E+02 0.0035 23.5 4.3 34 5-38 12-46 (105)
28 TIGR02190 GlrX-dom Glutaredoxi 20.5 2.1E+02 0.0046 21.5 4.5 22 5-26 21-42 (79)
29 TIGR02194 GlrX_NrdH Glutaredox 20.3 1.8E+02 0.004 21.4 4.1 21 5-25 12-32 (72)
30 PF05157 T2SE_Nter: Type II se 20.3 1.3E+02 0.0028 23.3 3.4 50 46-96 49-99 (109)
31 PLN03111 DNA-directed RNA poly 20.3 99 0.0021 29.0 3.0 44 3-48 147-190 (206)
No 1
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=249.05 Aligned_cols=164 Identities=38% Similarity=0.634 Sum_probs=160.6
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCC
Q 020246 1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLG 80 (329)
Q Consensus 1 m~m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~k 80 (329)
|.++.+++.++|+++||++..++|||+.|++|..+..+..+++.+||||++++|++|||+.+.++..+|++.+.+.+|.+
T Consensus 1 ~~kt~~el~~lL~eLgI~~~tveHppv~tveEs~~~~~eipgghtKnLfLkdkK~q~~lv~~~e~~~vDLk~ih~~IG~~ 80 (164)
T COG3760 1 MMKTEAELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVTVDEDAVVDLKSIHETIGAA 80 (164)
T ss_pred CCCCHHHHHHHHHHhCCCcccccCCCceehHHHHHHHhhcCCCccceeEeecCCCCEEEEEecccceecHHHHHHHhcee
Confidence 66889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCe
Q 020246 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (329)
Q Consensus 81 r~~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~ 160 (329)
+++|.++|.+.+++|+.||+|++||+.||.+++|++|+|+.++..+.|.|||++|+.|.+|+.+||.+||+++||+|.
T Consensus 81 --RlsFg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~ 158 (164)
T COG3760 81 --RLSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPR 158 (164)
T ss_pred --eeecCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCce
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecc
Q 020246 161 YVDLEA 166 (329)
Q Consensus 161 ~VD~s~ 166 (329)
++|+++
T Consensus 159 il~~~~ 164 (164)
T COG3760 159 ILDVSA 164 (164)
T ss_pred eeeccC
Confidence 999875
No 2
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=100.00 E-value=3.1e-33 Score=243.15 Aligned_cols=155 Identities=49% Similarity=0.778 Sum_probs=148.6
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCccc
Q 020246 6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLR 85 (329)
Q Consensus 6 ~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~Lr 85 (329)
+++.++|++++|.|+.++||++.|++++++.+++++++++|+|++++++++++++++|||+++|+++|++.+|.+ +++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv~~~~~~~~vlv~~~gd~~vn~~kl~~~lg~~--~l~ 79 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFLKDKKGRLYLVTALHDKKVDLKALSKQLGAS--RLS 79 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEEEEcCCCCEEEEEEcCCcccCHHHHHHHhCCC--Ccc
Confidence 579999999999999999999999999999999999999999999987668999999999999999999999986 799
Q ss_pred cCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCeEE
Q 020246 86 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (329)
Q Consensus 86 ~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~~V 162 (329)
||++|++.+++|+.+|+|||||+.+|..+++++|+|+++...+.+|||||+++.++.|+++||.++++++|+.+.+|
T Consensus 80 ~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~ 156 (156)
T cd04335 80 FASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV 156 (156)
T ss_pred cCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence 99999999999999999999999877777899999999999999999999999999999999999999999998875
No 3
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=99.97 E-value=3.3e-29 Score=216.44 Aligned_cols=149 Identities=26% Similarity=0.337 Sum_probs=139.6
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEcCCCCCCHHHHHHHhCCCCCc
Q 020246 6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGG 83 (329)
Q Consensus 6 ~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg--~~vLVVl~gD~~VDlkKLak~LG~kr~~ 83 (329)
++++++|++++|+|+.++||+..|++++++.+++++++++|+++|+++++ ++|++++|+|+++|++++++.+|.+ +
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~~~~~~vlvv~~~~~~v~~~kl~~~~g~~--~ 79 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVLPADKKLDLKAVAAAVGGK--K 79 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecCCCceEEEEEEeCccccCHHHHHHHhCCC--c
Confidence 57999999999999999999999999999999999999999999999765 7999999999999999999999976 6
Q ss_pred cccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEeccccc-CCeEEeecCCCcceEEecHHHHHHHHHhcCCCCeEE
Q 020246 84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (329)
Q Consensus 84 Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~-~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~~V 162 (329)
+++|+++++.+++|+.+|+|+|||+.+ ++++|+|.++.. .+.||+|+|+++.++.|+++||.+|+. +.++
T Consensus 80 l~~a~~~~l~~~~g~~~G~v~P~gl~~----~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~-----~~~~ 150 (153)
T cd04336 80 ADLASPEEAEELTGCVIGAVPPFSFDP----KLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR-----PLVL 150 (153)
T ss_pred cccCCHHHHHHHhCCccccCCCCCCCC----CceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEe
Confidence 999999999999999999999999974 799999999999 889999999999999999999999986 4566
Q ss_pred Eec
Q 020246 163 DLE 165 (329)
Q Consensus 163 D~s 165 (329)
+|+
T Consensus 151 ~~~ 153 (153)
T cd04336 151 QFT 153 (153)
T ss_pred ccC
Confidence 653
No 4
>PRK10670 hypothetical protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=221.37 Aligned_cols=149 Identities=17% Similarity=0.281 Sum_probs=137.6
Q ss_pred HHHHHHHhCCCCeEE--EEcCCCCC--HHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEcCCCCCCHHHHHHHhCCC
Q 020246 7 QLLARLKDLQIEFSQ--YEHPAVMT--VEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLG 80 (329)
Q Consensus 7 ~v~~~L~~l~I~ye~--veHp~v~T--iEeaA~~lg~~~~~iaKtLvLkdkkg--~~vLVVl~gD~~VDlkKLak~LG~k 80 (329)
.+.++|++++|+|+. ++|++..| .+++|+.+|+++.+++|+|+++.+++ ++++++++||+++|++|+++.+|.+
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~~~~~~~~~~vl~v~~gd~~ld~~kl~~~lg~~ 82 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAK 82 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEEEecCCCceEEEEEEECCceeCHHHHHHHhCCC
Confidence 588999999999998 77987764 49999999999999999999987542 4999999999999999999999986
Q ss_pred CCccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCe
Q 020246 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (329)
Q Consensus 81 r~~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~ 160 (329)
+++||++|++.+++||.+|+|||||+.+ ++++|+|+++..++.+|+++|.++.++.|+++||.++++ ..
T Consensus 83 --~~~~a~~eev~~~tG~~~G~v~P~Gl~~----~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~ 151 (159)
T PRK10670 83 --KVEMADPMVAQRSTGYLVGGISPLGQKK----RLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AK 151 (159)
T ss_pred --CcccCCHHHHHHhhCCccceECccCCCC----CCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CE
Confidence 7999999999999999999999999974 799999999999999999999999999999999999986 68
Q ss_pred EEEecc
Q 020246 161 YVDLEA 166 (329)
Q Consensus 161 ~VD~s~ 166 (329)
|+||+.
T Consensus 152 ~~di~~ 157 (159)
T PRK10670 152 FADIAR 157 (159)
T ss_pred EEEEEe
Confidence 999974
No 5
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=99.97 E-value=2.3e-29 Score=217.95 Aligned_cols=148 Identities=19% Similarity=0.246 Sum_probs=138.3
Q ss_pred HHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCc
Q 020246 7 QLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG 83 (329)
Q Consensus 7 ~v~~~L~~l~I~ye~veHp~v---~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~ 83 (329)
.+.++|++++|+|++++|++. .|++++++.+|+++++++|+++|++++++++++++|||+++|++++++++|.+ +
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~~~t~~e~a~~~g~~~~~~~Ktlv~~~~~~~~~lv~~~gd~~ld~~kl~~~lg~~--~ 79 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPDHLDGESAAEKLGVDPHRVFKTLVAEGDKKGPVVAVIPGDEELDLKKLAKASGGK--K 79 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCcccHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--C
Confidence 578999999999999999975 48899999999999999999999987667999999999999999999999976 7
Q ss_pred cccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCeEEE
Q 020246 84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD 163 (329)
Q Consensus 84 Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~~VD 163 (329)
++||+++++.+++|+.+|+|+|||+. .++++|+|.++...+.+++|+|+++.++.|+++||.++++ +.|+|
T Consensus 80 ~~~a~~ee~~~~~g~~~G~v~P~g~~----~~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~-----~~~~~ 150 (152)
T TIGR00011 80 AEMADPKDAEKVTGYIRGGISPIGQK----KKFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD-----GTFAD 150 (152)
T ss_pred cccCCHHHHHHhcCCcccccCCCCcC----CCccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC-----CEEEe
Confidence 99999999999999999999999987 3799999999999999999999999999999999999986 67887
Q ss_pred ec
Q 020246 164 LE 165 (329)
Q Consensus 164 ~s 165 (329)
++
T Consensus 151 i~ 152 (152)
T TIGR00011 151 IA 152 (152)
T ss_pred cC
Confidence 75
No 6
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=99.96 E-value=7.7e-28 Score=208.65 Aligned_cols=148 Identities=18% Similarity=0.261 Sum_probs=136.4
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCC
Q 020246 6 DQLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG 82 (329)
Q Consensus 6 ~~v~~~L~~l~I~ye~veHp~v---~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~ 82 (329)
+.+.++|++++|+|++++|+.. .|++|+++.++.++.+++|+++++.++++++++++|+|+++|++++++.+|.+
T Consensus 2 ~~~~~~L~~~~i~~~~~~h~~~~~~~t~~e~~~~~~~~~~~~~K~li~~~d~~~~vlv~~~gd~~ld~~kl~~~lg~~-- 79 (152)
T cd00002 2 TPAIRLLDKAKIPYELHEYEHDEDASDGLEAAEKLGLDPEQVFKTLVVEGDKKGLVVAVVPVDEELDLKKLAKALGAK-- 79 (152)
T ss_pred CHHHHHHHHcCCCeEEEeecCCCCcCCHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--
Confidence 4589999999999999999743 59999999999999999999999997667999999999999999999999986
Q ss_pred ccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCeEE
Q 020246 83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (329)
Q Consensus 83 ~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~~V 162 (329)
+++||+++++.+++|+.+|+|+|||+. .++++|+|.++...+.+++|+|+++.++.|+++||.++++ ..|+
T Consensus 80 ~l~~a~~ee~~~~~g~~~G~v~P~~l~----~~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~-----~~~~ 150 (152)
T cd00002 80 KVEMAPPKDAERLTGYIRGGISPLGQK----KRLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG-----AKFA 150 (152)
T ss_pred CcccCCHHHHHHhcCCcccccCccCcC----CCccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC-----CEEe
Confidence 799999999999999999999999997 3799999999999999999999999999999999999986 4566
Q ss_pred Ee
Q 020246 163 DL 164 (329)
Q Consensus 163 D~ 164 (329)
|+
T Consensus 151 ~~ 152 (152)
T cd00002 151 DI 152 (152)
T ss_pred cC
Confidence 53
No 7
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=99.95 E-value=2.9e-27 Score=203.97 Aligned_cols=140 Identities=21% Similarity=0.346 Sum_probs=133.6
Q ss_pred HHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCcc
Q 020246 6 DQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (329)
Q Consensus 6 ~~v~~~L~~l~I~ye~veHp-~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~L 84 (329)
+++.++|++++|.|+.++|| +..|++|+++.+|.++++++|++++++++ +++++++|+|+++|+++|++.+|. ++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~~~~~~~~K~l~~~~~~-~~~~v~~~~~~~ld~~kl~~~lg~---~l 77 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALGCEPGQIAKSLVFRVDD-EPVLVVTSGDARVDNKKFKALFGE---KL 77 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcCCChhHEEEEEEEEECC-cEEEEEEeCCcccCHHHHHHHhCC---Cc
Confidence 57999999999999999999 68999999999999999999999999965 699999999999999999999996 59
Q ss_pred ccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHH
Q 020246 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 153 (329)
Q Consensus 85 r~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~ 153 (329)
+||+++++.+++|+.+|+|+|||+.. ++++|+|.++...+.+++++|+++.++.|+++||.+++.
T Consensus 78 ~~a~~~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~ 142 (148)
T cd04333 78 KMADAEEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG 142 (148)
T ss_pred eeCCHHHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence 99999999999999999999999973 799999999999999999999999999999999999986
No 8
>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....
Probab=99.95 E-value=9.2e-27 Score=194.42 Aligned_cols=122 Identities=31% Similarity=0.483 Sum_probs=113.3
Q ss_pred cCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCccccCCHHHHHHHhCCCcccc
Q 020246 24 HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSV 103 (329)
Q Consensus 24 Hp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~Lr~AseEeL~ellGv~pG~V 103 (329)
||++.|++++++++|+++.+++|+++|++++++++++++++|+++|+++|++++|.+ +++||++|++.++||+.+|+|
T Consensus 1 h~~~~t~~~~a~~~~~~~~~~~Ktlv~~~~~~~~~lv~~~~d~~ld~~kl~~~~g~~--~l~~a~~e~~~~~~g~~~G~v 78 (123)
T PF04073_consen 1 HPPTRTIEDAAKALGVPPEQIVKTLVLKDKKGRPVLVVLPGDHRLDLKKLAKALGAR--RLRLASPEELEELTGYEPGGV 78 (123)
T ss_dssp ETTTSSHHHHHHHHTCSGGGEEEEEEEEETTTEEEEEEEETTSEB-HHHHHHHHT-S--SEEE-HHHHHHHHHSSTTTS-
T ss_pred CcCCCcHHHHHHHcCCCHHHEEEEEEEEECCCCEEEEEECCCCEecHHHHhcccccc--chhhccHHHhhhccCCCccee
Confidence 899999999999999999999999999998788999999999999999999999986 899999999999999999999
Q ss_pred CCCcc-cCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHH
Q 020246 104 TPFAL-VNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF 151 (329)
Q Consensus 104 sPfGL-~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~ 151 (329)
||||+ . .++++|+|+++.+.+.+++|+|+++.++.++.+||.+|
T Consensus 79 ~P~g~~~----~~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l 123 (123)
T PF04073_consen 79 SPFGLPP----KGVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL 123 (123)
T ss_dssp -SSGGGS----TTEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred ccccccc----CccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence 99999 6 48999999999999999999999999999999999986
No 9
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=190.78 Aligned_cols=141 Identities=22% Similarity=0.319 Sum_probs=130.4
Q ss_pred HHHHHHhCCCCeEE--EEc-CCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCcc
Q 020246 8 LLARLKDLQIEFSQ--YEH-PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (329)
Q Consensus 8 v~~~L~~l~I~ye~--veH-p~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~L 84 (329)
..++|+.++|.|+. +++ +...|.+++++.+|+++.+++|||++++++++++++|+|+|+++|+++|++++|.+ ++
T Consensus 4 a~~~l~~~~~~~~~~~~~~~~~~~~~~~aae~~g~~~~~i~KTLvl~~~~~~~~~~V~p~~~~Ldlkkla~~~G~k--k~ 81 (155)
T COG2606 4 AVRLLDKAKIAFEVHVYELDPSALTGAEAAEALGVDPAQVAKTLVLAVDKGGPALAVVPGDQRLDLKKLAKALGAK--KA 81 (155)
T ss_pred HHHHHHHhcCCCceeEEEecCCcccHHHHHHHhCCCHHHeeEEEEEEcCCCCEEEEEEeCcCccCHHHHHHHhCCc--cc
Confidence 56788888999877 333 45667999999999999999999999998678999999999999999999999997 79
Q ss_pred ccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHh
Q 020246 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 154 (329)
Q Consensus 85 r~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a 154 (329)
.|+++++++++|||..|+|||||+.. .+++|+|++++.+++|++++|.++..|.|+++||.+++.+
T Consensus 82 ~ma~~~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~~ 147 (155)
T COG2606 82 EMADPEEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLGA 147 (155)
T ss_pred ccCCHHHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhcc
Confidence 99999999999999999999999994 8999999999999999999999999999999999999873
No 10
>cd04332 YbaK_like YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).
Probab=99.92 E-value=3.7e-24 Score=179.49 Aligned_cols=130 Identities=31% Similarity=0.476 Sum_probs=122.9
Q ss_pred CeEEEEcCCC-CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCccccCCHHHHHHHh
Q 020246 18 EFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL 96 (329)
Q Consensus 18 ~ye~veHp~v-~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~Lr~AseEeL~ell 96 (329)
.|..+.|++. .|++++++.++.++++++|+++|++++++++++++|+|+++|+++|++++|.+ +++||+++++.+++
T Consensus 1 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~K~l~l~~~~~~~v~v~~~~d~~~d~~~l~~~~g~~--~l~~a~~~~~~~~~ 78 (136)
T cd04332 1 EYLEYEHTPGAKTIEEAAEALGVPPGQIAKTLVLKDDKGGLVLVVVPGDHELDLKKLAKALGAK--KLRLASEEELEELT 78 (136)
T ss_pred CcEEEecCCCCCCHHHHHHHcCCCHHHeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHhCCC--CeeeCCHHHHHHHh
Confidence 4678888877 99999999999999999999999998767999999999999999999999986 79999999999999
Q ss_pred CCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHH
Q 020246 97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 153 (329)
Q Consensus 97 Gv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~ 153 (329)
|+.+|+|+|||+.. ++++|+|.++...+.+++|+|+++.++.|+.+||.++++
T Consensus 79 g~~~G~v~P~~~~~----~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~ 131 (136)
T cd04332 79 GCEPGGVGPFGLKK----GVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG 131 (136)
T ss_pred CCCcCccCccccCC----CCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence 99999999999984 799999999999999999999999999999999999886
No 11
>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=99.90 E-value=4.4e-23 Score=178.66 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=114.1
Q ss_pred EEEcCC-CCCHHHHHHHhCCCCCceeeEEEEEecC---CcEEEEEEcCCCCCCHHH-HHHHhCCCCCccccCCHHHHHHH
Q 020246 21 QYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKK---HRFYIVSALADTKVDMKV-LSQRLGLGKGGLRMAPEETMLEI 95 (329)
Q Consensus 21 ~veHp~-v~TiEeaA~~lg~~~~~iaKtLvLkdkk---g~~vLVVl~gD~~VDlkK-Lak~LG~kr~~Lr~AseEeL~el 95 (329)
.|+|.+ .....++|+.+|+++++++|||+++.++ .+++++++++|+++|+++ +++.+|.+ +++|+++++++++
T Consensus 4 ~y~~~~~~~~~~~~A~~lG~~~~~i~KTLv~~~~~~~~~~~~v~vv~gd~~ldlkk~~~~~~g~k--k~~ma~~~ev~~~ 81 (139)
T cd04939 4 VFAIDPELADTAAFCARYGFGLEDSANCVVVAGKRGGEERYAACVVLATTRADVNGVVKRRLGAR--KASFAPMETAVEL 81 (139)
T ss_pred EEecCCCcccHHHHHHHhCCCHHHeEEEEEEEeecCCCccEEEEEEECccccCHHHHHHHHhCCC--CcccCCHHHHHHh
Confidence 466654 3556777889999999999999998642 258999999999999875 77999987 7999999999999
Q ss_pred hCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHh
Q 020246 96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 154 (329)
Q Consensus 96 lGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a 154 (329)
|||.+|+|||||+. +.+++|+|++++.++.||+++|+++.++.|+++||.++..+
T Consensus 82 TGy~~GGvsP~G~~----~~~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~a 136 (139)
T cd04939 82 TGMEYGGITPVGLP----AGWPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPGA 136 (139)
T ss_pred hCCCCccCCcCCcC----CCCCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhCC
Confidence 99999999999998 48999999999999999999999999999999999999864
No 12
>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.
Probab=99.88 E-value=4.2e-22 Score=174.10 Aligned_cols=118 Identities=20% Similarity=0.295 Sum_probs=111.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecC-CcEEEEEEcCCCCCCHHHHHHHhCCCCCccccCCHHHHHHH
Q 020246 17 IEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK-HRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEI 95 (329)
Q Consensus 17 I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkk-g~~vLVVl~gD~~VDlkKLak~LG~kr~~Lr~AseEeL~el 95 (329)
..|+.++||++.|++++++.++++..+++|+|+|++++ ++++++++|+|+++|+++|++++|.+ +++||+++++.++
T Consensus 25 ~~~~~v~hp~~~t~~~~a~~~~~~~~~~~K~l~~~~~~~~~~~l~~~~~d~~vd~~kl~~~~g~~--~l~~a~~eel~~~ 102 (160)
T cd04334 25 KELEKVATPGQKTIEELAEFLGVPPSQTVKTLLVKADGEEELVAVLLRGDHELNEVKLENLLGAA--PLELASEEEIEAA 102 (160)
T ss_pred cCCeEEcCcCCCCHHHHHHHhCcCHHHeEEEEEEEECCCCCEEEEEecCCchhCHHHHHHhcCCC--cceeCCHHHHHHh
Confidence 78999999999999999999999999999999999875 47999999999999999999999986 7999999999999
Q ss_pred hCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceE
Q 020246 96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI 141 (329)
Q Consensus 96 lGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl 141 (329)
+|+.+|+|+|||+. ++++|+|.++...+.+++++|.++..+
T Consensus 103 ~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~~~~ 143 (160)
T cd04334 103 TGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDDYHY 143 (160)
T ss_pred hCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCCcEE
Confidence 99999999999996 599999999999999999999888755
No 13
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.66 E-value=8.1e-16 Score=159.04 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=105.6
Q ss_pred EEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCccccCCHHHHHHHhCCCc
Q 020246 21 QYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPL 100 (329)
Q Consensus 21 ~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~Lr~AseEeL~ellGv~p 100 (329)
.++||+..|++++++.++.++++++|+|++++++ +++++++|+|+++|+++|++.+|.+ +++||+++++.+++|+.+
T Consensus 252 ~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~-~~~lvvvp~d~~vn~~kl~~~lg~~--~l~~a~~eel~~~~g~~~ 328 (565)
T PRK09194 252 KVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADG-ELVAVLVRGDHELNEVKLENLLGAA--PLELATEEEIRAALGAVP 328 (565)
T ss_pred eecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCC-eEEEEEeecchhhhHHHHHhhcCCc--ccccCCHHHHHHhhCCCC
Confidence 3478889999999999999999999999999865 7999999999999999999999986 799999999999999999
Q ss_pred cccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceE
Q 020246 101 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI 141 (329)
Q Consensus 101 G~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl 141 (329)
|+|+|||+.+ ++++|+|.++...+.+++++|.++..+
T Consensus 329 G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~~g~h~ 365 (565)
T PRK09194 329 GFLGPVGLPK----DVPIIADRSVADMSNFVVGANEDDYHY 365 (565)
T ss_pred CccCcccCCC----CceEEEeccccccccccccCCCCCcee
Confidence 9999999985 799999999999999999998877654
No 14
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.21 E-value=7.2e-11 Score=122.82 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=103.6
Q ss_pred eEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEcCCCCCCHHHHHHHhCCCCCccccCCHHHHHHHh
Q 020246 19 FSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL 96 (329)
Q Consensus 19 ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg--~~vLVVl~gD~~VDlkKLak~LG~kr~~Lr~AseEeL~ell 96 (329)
.+.+++|.+.|+++++.++++++.+.+|+++++..++ +++++++|||++||+.|+.+.+|.. ..+++|+++++...+
T Consensus 251 ~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~-~~~~~a~~~~~~~~~ 329 (568)
T TIGR00409 251 LDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVA-QVLELATEEEIFQKI 329 (568)
T ss_pred ceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccC-cccccCCHHHHHHhh
Confidence 4678899999999999999999999999999986432 5999999999999999999999532 148999999999999
Q ss_pred CCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcc
Q 020246 97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDM 139 (329)
Q Consensus 97 Gv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~ 139 (329)
|..+|+++|+|+. ..+++++|.++.....+.+++|..+.
T Consensus 330 g~~~g~~gpv~~~----~~~~i~~D~~~~~~~~~~~gan~~~~ 368 (568)
T TIGR00409 330 ASGPGSLGPVNIN----GGIPVLIDQTVALMSDFAAGANADDK 368 (568)
T ss_pred CCCCCccCccccc----cCceEEechhhhcccccccccCCCCc
Confidence 9999999999987 36899999999999999999988755
No 15
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.55 E-value=34 Score=28.97 Aligned_cols=13 Identities=54% Similarity=1.066 Sum_probs=9.8
Q ss_pred hhHHHHhhcccccccccc
Q 020246 300 KNLATIFKNTAYTQGFHA 317 (329)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~ 317 (329)
.||+++ |-+|||-
T Consensus 73 ~NL~~L-----Y~EGFHI 85 (110)
T PRK13169 73 DNLARL-----YQEGFHI 85 (110)
T ss_pred HHHHHH-----HHcCcee
Confidence 577766 7899984
No 16
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=46.07 E-value=20 Score=28.70 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEE
Q 020246 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (329)
Q Consensus 3 m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtL 48 (329)
|+.++..++|++.+|... +-|-+...+-+++++|..+++++|-.
T Consensus 18 Ls~eE~~~lL~~y~i~~~--qLP~I~~~DPv~r~~g~k~GdVvkI~ 61 (79)
T PRK09570 18 LSEEEAKKLLKEYGIKPE--QLPKIKASDPVVKAIGAKPGDVIKIV 61 (79)
T ss_pred CCHHHHHHHHHHcCCCHH--HCCceeccChhhhhcCCCCCCEEEEE
Confidence 568899999999999544 46788888889999999999999954
No 17
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=35.83 E-value=17 Score=28.75 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEE
Q 020246 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLF 49 (329)
Q Consensus 3 m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLv 49 (329)
|+.++..++|++++|.- .+-|-+...+-+++++|..+++++|..=
T Consensus 15 ls~eE~~~lL~~y~i~~--~qLP~I~~~DPv~r~~g~k~GdVvkI~R 59 (74)
T PF01191_consen 15 LSEEEKKELLKKYNIKP--EQLPKILSSDPVARYLGAKPGDVVKIIR 59 (74)
T ss_dssp E-HHHHHHHHHHTT--T--TCSSEEETTSHHHHHTT--TTSEEEEEE
T ss_pred cCHHHHHHHHHHhCCCh--hhCCcccccChhhhhcCCCCCCEEEEEe
Confidence 46789999999999843 3467788888899999999999999653
No 18
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=33.33 E-value=57 Score=25.59 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=37.6
Q ss_pred ecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCeEEEeccC
Q 020246 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167 (329)
Q Consensus 121 D~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~~VD~s~~ 167 (329)
++.+.+.+.+.|.-+..+..-+--.....++|.+.+..+.++|+...
T Consensus 2 ~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~ 48 (90)
T cd03028 2 KKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED 48 (90)
T ss_pred hhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 45566677778877777777777788899999999999999998653
No 19
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=33.11 E-value=1.6e+02 Score=30.25 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCCeEEEEc----CCCCCHHHHHHHhCCCCCceeeEEEEEecCCcE-EEEEEcCCCCCCHHHHHHHhCCC
Q 020246 6 DQLLARLKDLQIEFSQYEH----PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRF-YIVSALADTKVDMKVLSQRLGLG 80 (329)
Q Consensus 6 ~~v~~~L~~l~I~ye~veH----p~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~-vLVVl~gD~~VDlkKLak~LG~k 80 (329)
+.+.+.|++.+|+|++|+- |.+.++-++.+++ +++++ .+|.+-|..-.|..|-++++...
T Consensus 88 ~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefa---------------k~~~fDs~vaiGGGSa~DtaKaaaL~Asn 152 (465)
T KOG3857|consen 88 KVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFA---------------KKKNFDSFVAIGGGSAHDTAKAAALLASN 152 (465)
T ss_pred HHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHH---------------HhcccceEEEEcCcchhhhHHHHHHhhcC
Confidence 6789999999999999873 3445666666654 12222 45566777888888888877653
Q ss_pred CCccccCCHHHHHHHhCCCccccCCCcc
Q 020246 81 KGGLRMAPEETMLEILKVPLGSVTPFAL 108 (329)
Q Consensus 81 r~~Lr~AseEeL~ellGv~pG~VsPfGL 108 (329)
. +.++..+-|++.|-+-+...
T Consensus 153 ~-------~~eflDyvg~pigk~~~~s~ 173 (465)
T KOG3857|consen 153 G-------EGEFLDYVGPPIGKVKQSSK 173 (465)
T ss_pred C-------CccchhccCCcccccccccc
Confidence 1 23566666777776665443
No 20
>PRK14563 ribosome modulation factor; Provisional
Probab=29.15 E-value=16 Score=27.33 Aligned_cols=21 Identities=38% Similarity=0.785 Sum_probs=16.4
Q ss_pred ccccccccccccc-cccccCCC
Q 020246 308 NTAYTQGFHAGKA-SSLTQCPR 328 (329)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~ 328 (329)
+.||..||.||.. .+...||-
T Consensus 10 ~RA~~rGYqAGv~GrSke~CPy 31 (55)
T PRK14563 10 ERAFSRGYQAGIAGRSKEMCPY 31 (55)
T ss_pred HHHHHHHHhhhccCCCcccCCC
Confidence 4689999999975 45677884
No 21
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=26.36 E-value=1.1e+02 Score=29.52 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=35.8
Q ss_pred HHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCC--CceeeEEEEEecCC
Q 020246 9 LARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIG--GGLSKNLFLKDKKH 55 (329)
Q Consensus 9 ~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~--~~iaKtLvLkdkkg 55 (329)
.+.|+++||+|++ .|.+.+.-.+|..++... -.+..++++..-.+
T Consensus 96 m~~L~~~gI~yev--vPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sg 142 (254)
T COG2875 96 MRELEALGIPYEV--VPGVSSFAAAAAALGIELTVPGVSQTVILTRPSG 142 (254)
T ss_pred HHHHHHcCCCeEE--eCCchHHHHHHHHhCceeecCCcceeEEEEcccc
Confidence 4679999999999 469999999999998864 35778888875433
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.39 E-value=1.2e+02 Score=25.42 Aligned_cols=16 Identities=44% Similarity=0.794 Sum_probs=11.2
Q ss_pred hhhhhHHHHhhcccccccccc
Q 020246 297 PELKNLATIFKNTAYTQGFHA 317 (329)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (329)
.-.+||+.+ |-+|||-
T Consensus 73 ~g~~NL~~L-----Y~EGFHI 88 (107)
T PF06156_consen 73 EGRDNLARL-----YQEGFHI 88 (107)
T ss_pred chHHHHHHH-----HhcCeee
Confidence 345677766 7899984
No 23
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=24.58 E-value=1e+02 Score=32.23 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=46.5
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHH
Q 020246 1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVL 73 (329)
Q Consensus 1 m~m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKL 73 (329)
+||+.+++..+++-+|+..+.+-.-.+.++-+++..+-... -+..|.+... .|+|++...|..+..+.+
T Consensus 282 lGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~--~le~l~vHT~--~y~l~i~~~~~~~~~~~~ 350 (453)
T PRK14039 282 IGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQLASES--GLQRLIIHTR--EFVLCVSKPDVKMAKKKI 350 (453)
T ss_pred ccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHc--CCCEEEEEec--ceEEEEecCCCCccHHHH
Confidence 58999999999999998764432222344444444332211 3455777764 599999999998887777
No 24
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=24.15 E-value=1.3e+02 Score=31.26 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHhCCC---CeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHh
Q 020246 1 MAYSKDQLLARLKDLQI---EFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRL 77 (329)
Q Consensus 1 m~m~~~~v~~~L~~l~I---~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~L 77 (329)
.||+.+++..+|+-+|. ...++.++.+.++-+++..+-. ..-++.+.+... .|+|++.+.|..+....+++.|
T Consensus 280 lGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~--~~~leri~vHT~--~y~l~i~~~~~p~~~~~~~~aL 355 (446)
T TIGR02045 280 VGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLD--ELNLEVVQVHTI--YYIMYITHADNPLSEEELRRSL 355 (446)
T ss_pred ccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHH--HcCCCEEEEEec--ceeEEEeccCCCCCHHHHHHHH
Confidence 37999999999987765 4455666655555555444322 123577778764 5999999999999988888876
Q ss_pred CC
Q 020246 78 GL 79 (329)
Q Consensus 78 G~ 79 (329)
-.
T Consensus 356 ~f 357 (446)
T TIGR02045 356 EF 357 (446)
T ss_pred HH
Confidence 54
No 25
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=23.91 E-value=80 Score=25.39 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=35.3
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEE
Q 020246 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (329)
Q Consensus 4 ~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtL 48 (329)
+.++..+.|++++|.- .+-|.+...+=+|+.+|..++.++|-+
T Consensus 22 s~eE~~~vLk~l~i~~--~qLPkI~~~DPva~~lgak~GdvVkIv 64 (80)
T COG2012 22 SEEEAKEVLKELGIEP--EQLPKIKASDPVAKALGAKPGDVVKIV 64 (80)
T ss_pred CHHHHHHHHHHhCCCH--HHCCcccccChhHHHccCCCCcEEEEE
Confidence 5688899999999943 446788888889999999999988743
No 26
>PF04957 RMF: Ribosome modulation factor; InterPro: IPR007040 This entry contains ribosome modulation factors (RMF). They associate with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia colicells [, ]. It has been proposed that RMF mediates the formation of a 'storage ribosome', the 100S particle, in stationary phase by inactivating excess ribosomes to protect them from degradation and to maintain the required balance between the concentrations of ribosomes and protein synthesis factors in order to maintain translational elongation efficiency [, ]. ; PDB: 2JRM_A 3V24_V 3V22_V.
Probab=23.54 E-value=18 Score=27.03 Aligned_cols=21 Identities=38% Similarity=0.798 Sum_probs=14.7
Q ss_pred ccccccccccccc-cccccCCC
Q 020246 308 NTAYTQGFHAGKA-SSLTQCPR 328 (329)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~ 328 (329)
+.||..||.||.. .+...||-
T Consensus 10 ~RA~~~GYqAG~~Grske~CPy 31 (55)
T PF04957_consen 10 ERAYSRGYQAGLSGRSKELCPY 31 (55)
T ss_dssp HHHHHHHHHHHCTTTSGCC--S
T ss_pred HHHHHHHHHhhccCCCcccCCC
Confidence 4689999999964 45678885
No 27
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=21.90 E-value=1.6e+02 Score=23.47 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCeEEEEc-CCCCCHHHHHHHhC
Q 020246 5 KDQLLARLKDLQIEFSQYEH-PAVMTVEAQAKYVG 38 (329)
Q Consensus 5 ~~~v~~~L~~l~I~ye~veH-p~v~TiEeaA~~lg 38 (329)
...+.++|+++||+|+.++- ..-.+.+++.+.++
T Consensus 12 c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 12 SRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred HHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 46789999999999999875 33456666666554
No 28
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=20.51 E-value=2.1e+02 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 020246 5 KDQLLARLKDLQIEFSQYEHPA 26 (329)
Q Consensus 5 ~~~v~~~L~~l~I~ye~veHp~ 26 (329)
..++.++|+++||+|+.++-..
T Consensus 21 C~~ak~~L~~~gi~y~~idi~~ 42 (79)
T TIGR02190 21 CAKAKATLKEKGYDFEEIPLGN 42 (79)
T ss_pred HHHHHHHHHHcCCCcEEEECCC
Confidence 3679999999999999987543
No 29
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=20.34 E-value=1.8e+02 Score=21.37 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 020246 5 KDQLLARLKDLQIEFSQYEHP 25 (329)
Q Consensus 5 ~~~v~~~L~~l~I~ye~veHp 25 (329)
...+.++|+++||+|+.++-.
T Consensus 12 C~~ak~~L~~~~i~~~~~di~ 32 (72)
T TIGR02194 12 CKMTKKALEEHGIAFEEINID 32 (72)
T ss_pred HHHHHHHHHHCCCceEEEECC
Confidence 367899999999999998754
No 30
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=20.28 E-value=1.3e+02 Score=23.35 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=33.1
Q ss_pred eEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCC-CCCccccCCHHHHHHHh
Q 020246 46 KNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGL-GKGGLRMAPEETMLEIL 96 (329)
Q Consensus 46 KtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~-kr~~Lr~AseEeL~ell 96 (329)
+.+.++..++.+++++......--...|+..+|. +. ++.+|+++++.+.+
T Consensus 49 ~~lPl~~~~~~l~va~~dP~~~~~~~~l~~~~~~~~i-~~~la~~~~i~~~l 99 (109)
T PF05157_consen 49 RVLPLRQDDGTLVVAVADPLDPEALDELEFLLGKYPI-EFVLATREDIDQLL 99 (109)
T ss_dssp TEEEEEECTTCEEEEES-TT-HHHHHHHHHHH-S--E-EEEE--HHHHHHHH
T ss_pred CEEEEEEECCEEEEEEcCCCCHHHHHHHHHHcCCCCe-EEEEeCHHHHHHHH
Confidence 4566676667777777776666567888888887 43 67889999998876
No 31
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=20.26 E-value=99 Score=29.03 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEE
Q 020246 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNL 48 (329)
Q Consensus 3 m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtL 48 (329)
++.++..++|++++|. ..+-|-+...+-+|+++|..+++++|-.
T Consensus 147 ls~eEk~~lL~~y~i~--~~qLPrI~~~DPvary~g~k~G~vvkI~ 190 (206)
T PLN03111 147 LTDEEKKTLLKRYTVK--ETQLPRIQVSDPIARYYGLKRGQVVKII 190 (206)
T ss_pred cCHHHHHHHHHHcCCC--HHHCCcccccChhhHhcCCCCCCEEEEE
Confidence 5678999999999985 3446788888889999999999999954
Done!