Query 020246
Match_columns 329
No_of_seqs 186 out of 1380
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjf_A DNA-binding protein, pu 100.0 8.4E-36 2.9E-40 264.8 17.8 165 3-169 14-178 (180)
2 1vki_A Hypothetical protein AT 100.0 2.2E-35 7.6E-40 262.3 20.5 163 2-166 18-181 (181)
3 3op6_A Uncharacterized protein 100.0 4.6E-33 1.6E-37 240.1 15.4 151 2-164 1-152 (152)
4 2z0x_A Putative uncharacterize 100.0 1.7E-31 5.7E-36 230.7 18.5 153 1-166 3-157 (158)
5 1wdv_A Hypothetical protein AP 100.0 2.6E-30 9E-35 221.0 18.8 148 6-165 3-151 (152)
6 1dbu_A HI1434, cysteinyl-tRNA( 100.0 1.5E-29 5E-34 218.2 17.3 150 6-166 2-157 (158)
7 2dxa_A Protein YBAK; trans-edi 100.0 4.6E-29 1.6E-33 217.5 14.5 154 2-166 4-164 (166)
8 3mem_A Putative signal transdu 99.9 6.7E-23 2.3E-27 204.7 10.5 131 6-158 6-139 (457)
9 2j3l_A Prolyl-tRNA synthetase; 99.2 1.8E-10 6.2E-15 117.2 17.6 107 25-138 258-364 (572)
10 1hmj_A RPB5, protein (subunit 48.0 11 0.00039 28.9 2.7 43 3-47 15-57 (78)
11 4ayb_H DNA-directed RNA polyme 43.0 26 0.0009 27.1 4.1 60 3-64 23-84 (84)
12 1eik_A RNA polymerase subunit 40.5 12 0.00041 28.7 1.8 43 3-47 17-59 (77)
13 2jrm_A Ribosome modulation fac 30.1 8.9 0.0003 28.6 -0.5 22 308-329 10-32 (65)
14 3v22_V Ribosome modulation fac 28.8 9.5 0.00033 28.1 -0.5 21 308-328 10-31 (61)
15 3gkn_A Bacterioferritin comigr 20.4 2.9E+02 0.0098 21.5 6.9 54 4-61 79-141 (163)
No 1
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=100.00 E-value=8.4e-36 Score=264.77 Aligned_cols=165 Identities=36% Similarity=0.633 Sum_probs=157.4
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCC
Q 020246 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG 82 (329)
Q Consensus 3 m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~ 82 (329)
|+.++++++|+++||+|+.++||+..|++++++++++++++++|||++++++++||++++|+|+++|+++|++.+|.+
T Consensus 14 ~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~ld~kkl~~~lg~k-- 91 (180)
T 1vjf_A 14 KTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG-- 91 (180)
T ss_dssp CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--
T ss_pred chHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCccCHHHHHHHhCCC--
Confidence 568999999999999999999999999999999999999999999999996677999999999999999999999986
Q ss_pred ccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCeEE
Q 020246 83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (329)
Q Consensus 83 ~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~~V 162 (329)
+++||++++++++|||.+|+|+|||+.++..+.+++|+|+++...+.|+||||.++.++.|+++||.+++++.+|.+.||
T Consensus 92 ~l~~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v 171 (180)
T 1vjf_A 92 RLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIV 171 (180)
T ss_dssp CEEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEE
T ss_pred CeeeCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEE
Confidence 79999999999999999999999999876667899999999999999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 020246 163 DLEANPA 169 (329)
Q Consensus 163 D~s~~~~ 169 (329)
||+++..
T Consensus 172 ~~~~~~~ 178 (180)
T 1vjf_A 172 DFAAMEV 178 (180)
T ss_dssp ETTTTEE
T ss_pred ECccccc
Confidence 9988543
No 2
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=100.00 E-value=2.2e-35 Score=262.26 Aligned_cols=163 Identities=33% Similarity=0.526 Sum_probs=155.2
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhC-CC
Q 020246 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG-LG 80 (329)
Q Consensus 2 ~m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG-~k 80 (329)
.|+.++++++|+++||+|+.++||+..|++++++++|+++++++|||++++++++||++++|+|+++|++++++.+| .+
T Consensus 18 ~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~vlvvv~gd~~ld~kkl~~~lg~~k 97 (181)
T 1vki_A 18 RKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAAS 97 (181)
T ss_dssp CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCSS
T ss_pred chHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCCeEEEEEEeCCCccCHHHHHHHhCCCC
Confidence 36788999999999999999999999999999999999999999999999976789999999999999999999999 55
Q ss_pred CCccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCe
Q 020246 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (329)
Q Consensus 81 r~~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~ 160 (329)
+++||++++++++|||.+|+|||||+.+|..+++++|+|+++...+.|+||||.++.++.|+++||.+++++.||.+.
T Consensus 98 --~l~~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~ 175 (181)
T 1vki_A 98 --RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPL 175 (181)
T ss_dssp --SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCE
T ss_pred --CeEECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeE
Confidence 799999999999999999999999997766678999999999999999999999999999999999999999999999
Q ss_pred EEEecc
Q 020246 161 YVDLEA 166 (329)
Q Consensus 161 ~VD~s~ 166 (329)
||||++
T Consensus 176 ~v~~~~ 181 (181)
T 1vki_A 176 VLKVSE 181 (181)
T ss_dssp EECCBC
T ss_pred EEeCCC
Confidence 999964
No 3
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=100.00 E-value=4.6e-33 Score=240.10 Aligned_cols=151 Identities=22% Similarity=0.353 Sum_probs=137.7
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCC
Q 020246 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGK 81 (329)
Q Consensus 2 ~m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr 81 (329)
||+.+++.++|+++||+|+.++||+..|++++++.+|+++++++|||+++++ ++||++++|+|+++|++|+++++|.+
T Consensus 1 ~M~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg~~- 78 (152)
T 3op6_A 1 GMPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMD-GRLAMVVLPASDHITFMKLKEAIGTS- 78 (152)
T ss_dssp -CHHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEET-TEEEEEEEETTCCCCHHHHHHHHSCS-
T ss_pred CCcHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEEC-CeEEEEEECCCCeECHHHHHHHhCCC-
Confidence 7899999999999999999999999999999999999999999999999996 57999999999999999999999986
Q ss_pred CccccCCHHHHHHHh-CCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCe
Q 020246 82 GGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (329)
Q Consensus 82 ~~Lr~AseEeL~ell-Gv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~ 160 (329)
+++||+++++.+.+ ||.+|+|||||+.+ ++++|+|+++...+.|++|+|+++.++.|+++||.++++ ..
T Consensus 79 -~~~~a~~e~l~~~~tG~~~G~v~P~g~~~----~~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~ 148 (152)
T 3op6_A 79 -DLELATESEFEGKFAECDVGAMPPFGNLY----GLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK-----PT 148 (152)
T ss_dssp -CEEECCGGGTGGGCTTSCTTCCCSCGGGG----TCCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC-----CE
T ss_pred -ceeeCCHHHHHHHhcCCCcCCCCCCCCCc----CCeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc-----Ce
Confidence 79999999999884 99999999999985 699999999999999999999999999999999999996 45
Q ss_pred EEEe
Q 020246 161 YVDL 164 (329)
Q Consensus 161 ~VD~ 164 (329)
++|+
T Consensus 149 ~~d~ 152 (152)
T 3op6_A 149 LVTL 152 (152)
T ss_dssp EECC
T ss_pred ecCC
Confidence 5553
No 4
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A
Probab=99.98 E-value=1.7e-31 Score=230.66 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=143.6
Q ss_pred CCCcHHHHHHHHHhCCCCe-EEEEcCC-CCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhC
Q 020246 1 MAYSKDQLLARLKDLQIEF-SQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG 78 (329)
Q Consensus 1 m~m~~~~v~~~L~~l~I~y-e~veHp~-v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG 78 (329)
|.|+.+++.++|+++||+| +.++||+ ..|++++++.+|+++++++|||+++++ +++|++++|+|+++|++|+++.+|
T Consensus 3 ~~m~~~~~~~~L~~~~i~~~~~~~~p~~~~t~~e~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg 81 (158)
T 2z0x_A 3 LSPSARRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKSLVFVGE-KGAYLFLVSGKNRLDLGKATRLVG 81 (158)
T ss_dssp CCHHHHHHHHHHHHTTCTTSCEEECSSCCSSHHHHHHHHTCCGGGEEEEEEEEES-SSEEEEEEETTCCBCHHHHHHHHT
T ss_pred cchhHHHHHHHHHHcCCCCCEEEEcCCCCCCHHHHHHHcCCCHHHEEEEEEEEeC-CcEEEEEEECchhhCHHHHHHHhC
Confidence 4567899999999999999 9999995 999999999999999999999999984 579999999999999999999999
Q ss_pred CCCCccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCC
Q 020246 79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD 158 (329)
Q Consensus 79 ~kr~~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~ 158 (329)
. +++||++++++++|||.+|+|+|||+.+ ++++|+|+++...+.|++|+|+++.++.|+++||.++++
T Consensus 82 ~---~l~~a~~e~~~~~tG~~~G~v~P~gl~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~----- 149 (158)
T 2z0x_A 82 G---PLRQATPEEVRELTGFAIGGVPPVGHNT----PLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG----- 149 (158)
T ss_dssp S---CEEECCHHHHHHHHSSCTTSCCSSCCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----
T ss_pred C---CcEECCHHHHHHHhCCCCccCCcCCCCC----CCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----
Confidence 7 3999999999999999999999999973 799999999999999999999999999999999999996
Q ss_pred CeEEEecc
Q 020246 159 PAYVDLEA 166 (329)
Q Consensus 159 ~~~VD~s~ 166 (329)
..|+|++.
T Consensus 150 ~~~~di~~ 157 (158)
T 2z0x_A 150 AQVADLKE 157 (158)
T ss_dssp CEEECCBC
T ss_pred CEEEEeec
Confidence 56888874
No 5
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=99.97 E-value=2.6e-30 Score=220.97 Aligned_cols=148 Identities=17% Similarity=0.287 Sum_probs=139.9
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCcc
Q 020246 6 DQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (329)
Q Consensus 6 ~~v~~~L~~l~I~ye~veHp~v-~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~L 84 (329)
+++.++|+++||+|+.++||+. .|++++++.+|+++++++|||+++++++++|++++|+|+++|++|+++.+| + ++
T Consensus 3 ~~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~~l~vv~gd~~ld~~kl~~~~g-~--~l 79 (152)
T 1wdv_A 3 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-K--PV 79 (152)
T ss_dssp CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT-S--CE
T ss_pred HHHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCCcEEEEEEECchhhCHHHHHHHHC-C--Cc
Confidence 4799999999999999999999 999999999999999999999999866689999999999999999999999 5 79
Q ss_pred ccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCeEEEe
Q 020246 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164 (329)
Q Consensus 85 r~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~~~VD~ 164 (329)
+||++++++++|||.+|+|+|||+.+ ++++|+|+++...+.|++++|.++.++.++++||.+++. ..|+|+
T Consensus 80 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~-----~~~~di 150 (152)
T 1wdv_A 80 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV 150 (152)
T ss_dssp EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred eeCCHHHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhC-----CEEEee
Confidence 99999999999999999999999974 799999999999999999999999999999999999986 468887
Q ss_pred c
Q 020246 165 E 165 (329)
Q Consensus 165 s 165 (329)
+
T Consensus 151 ~ 151 (152)
T 1wdv_A 151 S 151 (152)
T ss_dssp B
T ss_pred e
Confidence 5
No 6
>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A
Probab=99.97 E-value=1.5e-29 Score=218.21 Aligned_cols=150 Identities=15% Similarity=0.241 Sum_probs=136.0
Q ss_pred HHHHHHHHhCCCCeEEE--EcCCC--CCHHHHHHHhCCCCCceeeEEEEEe--cCCcEEEEEEcCCCCCCHHHHHHHhCC
Q 020246 6 DQLLARLKDLQIEFSQY--EHPAV--MTVEAQAKYVGNIGGGLSKNLFLKD--KKHRFYIVSALADTKVDMKVLSQRLGL 79 (329)
Q Consensus 6 ~~v~~~L~~l~I~ye~v--eHp~v--~TiEeaA~~lg~~~~~iaKtLvLkd--kkg~~vLVVl~gD~~VDlkKLak~LG~ 79 (329)
+++.++|+++||+|+++ +|++. .|++++++.+|+++++++|||+++. +++++|++++|+|+++|++++++.+|.
T Consensus 2 t~~~~~L~~~~i~~~~~~~~~~~~~~~t~~e~a~~l~~~~~~~~Ktl~~~~~~~~~~~~lvv~~gd~~ld~~kl~~~~g~ 81 (158)
T 1dbu_A 2 TPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGV 81 (158)
T ss_dssp CHHHHHHHHHTCCCEEEECCCCCC-----CHHHHHHTCCGGGEEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTC
T ss_pred ChHHHHHHHCCCCeEEEEEccCCcccchHHHHHHHcCCCHhHeEEEEEEEecCCCCcEEEEEEECCceeCHHHHHHHhCC
Confidence 56899999999999996 66776 6899999999999999999999985 345799999999999999999999998
Q ss_pred CCCccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCC
Q 020246 80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159 (329)
Q Consensus 80 kr~~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~~ 159 (329)
+ +++||++++++++||+.+|+|+|||+. .++++|+|+++...+.+++|+|.++.++.|+++||.+++. .
T Consensus 82 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~-----~ 150 (158)
T 1dbu_A 82 K--KVEMADKDAAQKSTGYLVGGISPLGQK----KRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----A 150 (158)
T ss_dssp S--CEEECCHHHHHHHHSSCTTSCCSSSCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----C
T ss_pred C--CeeeCCHHHHHHHhCCCCccCCCCCCC----CCCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhC-----C
Confidence 6 799999999999999999999999986 3799999999999999999999999999999999999986 4
Q ss_pred eEEEecc
Q 020246 160 AYVDLEA 166 (329)
Q Consensus 160 ~~VD~s~ 166 (329)
.|+||+.
T Consensus 151 ~~~di~~ 157 (158)
T 1dbu_A 151 EFTDIVD 157 (158)
T ss_dssp EEECCBC
T ss_pred EEEeeec
Confidence 6888875
No 7
>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}
Probab=99.96 E-value=4.6e-29 Score=217.47 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=138.5
Q ss_pred CCc-HHHHHHHHHhCCCCeEE--EEcCCC--CCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEcCCCCCCHHHHH
Q 020246 2 AYS-KDQLLARLKDLQIEFSQ--YEHPAV--MTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLS 74 (329)
Q Consensus 2 ~m~-~~~v~~~L~~l~I~ye~--veHp~v--~TiEeaA~~lg~~~~~iaKtLvLkdkkg--~~vLVVl~gD~~VDlkKLa 74 (329)
||+ ++++.++|+++||+|++ ++|++. .|++++|+.+|+++++++|||+++++++ +||++++|+|+++|++|++
T Consensus 4 ~~~~~t~~~~~L~~~~i~y~~~~~~h~~~~~~~~~e~a~~l~~~~~~~~Ktlv~~~~~~~~~~~lvvv~gd~~ld~~kl~ 83 (166)
T 2dxa_A 4 GSSGMTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVA 83 (166)
T ss_dssp ----CCHHHHHHHHTTCCCEEEECCCCTTSCCSSCHHHHHHTCCTTTEEEEEEEEETTEEEEEEEEEEETTSEECHHHHH
T ss_pred CCCchhHHHHHHHHCCCCcEEEEEecCCcccchHHHHHHHcCCCHHHeeEEEEEEeCCCCceEEEEEEeCCceeCHHHHH
Confidence 354 37899999999999999 568873 7889999999999999999999998542 4999999999999999999
Q ss_pred HHhCCCCCccccCCHHHHHHHhCCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHh
Q 020246 75 QRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 154 (329)
Q Consensus 75 k~LG~kr~~Lr~AseEeL~ellGv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a 154 (329)
+.+|.+ +++||+++++++++||.+|+|+|||+. .++++|+|+++...+.|++|+|.++.++.|+++||.+++.
T Consensus 84 ~~lg~~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~- 156 (166)
T 2dxa_A 84 KALGAK--KVEMADPMVAQRSTGYLVGGISPLGQK----KRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILD- 156 (166)
T ss_dssp HHHTCS--CEEECCHHHHHHHHSSCTTCCCSSSCS----SCCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHT-
T ss_pred HHhCCC--ceEECCHHHHHHccCCCCccCCCcCCC----CCCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhC-
Confidence 999986 799999999999999999999999996 3799999999999999999999999999999999999986
Q ss_pred cCCCCeEEEecc
Q 020246 155 IGRDPAYVDLEA 166 (329)
Q Consensus 155 ~g~~~~~VD~s~ 166 (329)
..|+||+.
T Consensus 157 ----~~~~di~~ 164 (166)
T 2dxa_A 157 ----AKFADIAR 164 (166)
T ss_dssp ----CEEECCEE
T ss_pred ----CEEEEEec
Confidence 46888874
No 8
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=99.88 E-value=6.7e-23 Score=204.74 Aligned_cols=131 Identities=17% Similarity=0.244 Sum_probs=123.0
Q ss_pred HHHHHHHHhC--CCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCc
Q 020246 6 DQLLARLKDL--QIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG 83 (329)
Q Consensus 6 ~~v~~~L~~l--~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~ 83 (329)
+++.++|+++ ||+|+.++ |+++++++|||+++++++ |+++|+|+|++||++++++.+|.+
T Consensus 6 ~~v~~~L~~~~~~i~y~~~~--------------g~~~~~i~Ktl~~~~~~~-~~l~v~p~~~~ldlk~l~~~~g~k--- 67 (457)
T 3mem_A 6 VVVQQALGDNAPGVSFRSVS--------------QIDTGHLLRMVLLSDDQG-NLQAICRRNDMLDLEALNKRLGRD--- 67 (457)
T ss_dssp HHHHHHHTTSCTTCEEEECC--------------SSCGGGBEEEEEEEETTE-EEEEEEETTSEECHHHHHHHHTCC---
T ss_pred HHHHHHHHhCCCCCceEEeC--------------CCCHhHeeeEEEEEECCc-EEEEEecCCCeeCHHHHHHHhCCC---
Confidence 7899999999 99999987 678999999999999765 999999999999999999999973
Q ss_pred cccCCHHHHHHHh-CCCccccCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCC
Q 020246 84 LRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD 158 (329)
Q Consensus 84 Lr~AseEeL~ell-Gv~pG~VsPfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~~tl~Is~~DL~k~L~a~g~~ 158 (329)
++|++++++.++| ||.+|+|||||..+ ++++|+|+++...+.||+++|+++.++.|+++||.+++++.+|.
T Consensus 68 ~~~~~~~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~~ 139 (457)
T 3mem_A 68 LRMMQRREQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAARH 139 (457)
T ss_dssp CEECCHHHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEEE
T ss_pred CeeCCHHHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCcc
Confidence 9999999999999 69999999999985 79999999999999999999999999999999999999876654
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.24 E-value=1.8e-10 Score=117.19 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCccccCCHHHHHHHhCCCccccC
Q 020246 25 PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVT 104 (329)
Q Consensus 25 p~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~~vLVVl~gD~~VDlkKLak~LG~kr~~Lr~AseEeL~ellGv~pG~Vs 104 (329)
|...|++++++.+|+++.+++|+++++..+ +++++++++|+++|++++.+.+|.+ .++++..+++.+++|+..|+++
T Consensus 258 ~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~-~~~~vli~gd~el~~~kl~~~l~~~--~l~~a~~~el~~~~g~~~g~~~ 334 (572)
T 2j3l_A 258 PEVGTIAEVANFFEVEPQRIIKSVLFIADE-EPVMVLVRGDHDVNDVKLKNFLGAD--FLDEATEEDARRVLGAGFGSIG 334 (572)
T ss_dssp TTCCSHHHHHHHHTCCGGGBEEEEEEEETT-EEEEEEEETTCCBCHHHHHHHHTCS--CEEECCHHHHHHHHSSCTTSCC
T ss_pred CCCCcHHHHHHHhCcCHHHeEEEEEEEeCC-cEEEEEeeCccccCHHHHHHhhCCC--ccccCCHHHHHHhhCCCccccC
Confidence 345679999999999999999999999854 7999999999999999999999985 6999999999999999999999
Q ss_pred CCcccCCCCCCeEEEEecccccCCeEEeecCCCc
Q 020246 105 PFALVNESARDVALLLDKGFKAQERCFFHPLSND 138 (329)
Q Consensus 105 PfGL~nd~~~~V~VIvD~sL~~~~~I~~haG~n~ 138 (329)
|+|+. +++++++|.++.....+++++|..+
T Consensus 335 p~gl~----~~i~~~iD~sl~r~~~~~~ga~~~~ 364 (572)
T 2j3l_A 335 PVNVS----EDVKIYADLAVQDLANAIVGANEDG 364 (572)
T ss_dssp STTCC----TTCEEEEETTTTTCCSEEEECSSTT
T ss_pred CccCC----CCCcEEEehhhhcCCceEEccCCCC
Confidence 99986 3799999999999999999998654
No 10
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=47.99 E-value=11 Score=28.92 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 020246 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (329)
Q Consensus 3 m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKt 47 (329)
|+.++..++|++.+|. ..+-|-+...+-+|+++|..+++++|-
T Consensus 15 Ls~eEk~~lL~~y~i~--~~qLPrI~~~DPvar~~G~k~GdVvkI 57 (78)
T 1hmj_A 15 VPKEEVEEILKRYNIK--IQQLPKIYEDDPVIQEIGAKEGDVVRV 57 (78)
T ss_pred CCHHHHHHHHHHcCCC--HHHCCeeeCcCHhhHHhCCCCCCEEEE
Confidence 5689999999999995 344678888889999999999999997
No 11
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=43.03 E-value=26 Score=27.07 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCc--EEEEEEcC
Q 020246 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR--FYIVSALA 64 (329)
Q Consensus 3 m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKtLvLkdkkg~--~vLVVl~g 64 (329)
++.++..++|++.+|.-+ +-|-+...+-+|+++|..+++++|-.=-..-.|+ +|=+|++|
T Consensus 23 Ls~eE~~~ll~~y~i~~~--qLP~I~~~DPva~~~g~k~GdVvkI~R~S~tag~~~~YR~vv~g 84 (84)
T 4ayb_H 23 LSIDEAYKILKELGIRPE--QLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVISG 84 (84)
T ss_dssp CCHHHHHHHHHHHTCCGG--GSCCEESSSHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEEC-
T ss_pred CCHHHHHHHHHHhcCCHh--HCCeecccCHhHHhhCCCCCCEEEEEEcCCCCCccEEEEEEeCC
Confidence 467889999999999643 4577777788999999999999986543221222 55555544
No 12
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=40.48 E-value=12 Score=28.67 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 020246 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (329)
Q Consensus 3 m~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~iaKt 47 (329)
|+.++..++|++.+|.- .+-|-+...+-+|+++|..+++++|-
T Consensus 17 Ls~eEk~~lL~~y~i~~--~qLP~I~~~DPvar~~G~k~GdVvkI 59 (77)
T 1eik_A 17 LNESEAKRVLKELDAHP--EQLPKIKTTDPVAKAIGAKRGDIVKI 59 (77)
T ss_dssp ECHHHHHHHHHHTTCCT--TTSCCCBTTSHHHHGGGCCTTCEEEE
T ss_pred cCHHHHHHHHHHcCCCH--HHCCeeeCcCHhhHHhCCCCCCEEEE
Confidence 46789999999999953 34578889999999999999999997
No 13
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=30.11 E-value=8.9 Score=28.59 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=17.3
Q ss_pred ccccccccccccc-cccccCCCC
Q 020246 308 NTAYTQGFHAGKA-SSLTQCPRT 329 (329)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~ 329 (329)
+.||..||.||.. .+...||-+
T Consensus 10 eRA~~rGYqAGl~GrSke~CPy~ 32 (65)
T 2jrm_A 10 ERAQSQGYKAGLNGRSQEACPYQ 32 (65)
T ss_dssp HHHHHHHHHHHHTSCSGGGCCSC
T ss_pred HHHHHHHHHhhcCCCCcccCCCC
Confidence 5689999999964 567789953
No 14
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=28.77 E-value=9.5 Score=28.09 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=16.8
Q ss_pred ccccccccccccc-cccccCCC
Q 020246 308 NTAYTQGFHAGKA-SSLTQCPR 328 (329)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~ 328 (329)
+.||..||.||.. .....||-
T Consensus 10 eRA~~rGYqAGl~GrSke~CPy 31 (61)
T 3v22_V 10 ERAHQRGYQAGIAGRSKEMCPY 31 (61)
T ss_dssp HHHHHHHHHHHSSSSCCSSCCC
T ss_pred HHHHHHHHHhhccCCChhhCCC
Confidence 5689999999964 45678985
No 15
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=20.42 E-value=2.9e+02 Score=21.47 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=34.2
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCc---------eeeEEEEEecCCcEEEEE
Q 020246 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGG---------LSKNLFLKDKKHRFYIVS 61 (329)
Q Consensus 4 ~~~~v~~~L~~l~I~ye~veHp~v~TiEeaA~~lg~~~~~---------iaKtLvLkdkkg~~vLVV 61 (329)
+.+.+.++++++++.|..+.-+. .+.++.+|+.... .+-+.++-|++|+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 79 SVKSHDNFCAKQGFAFPLVSDGD----EALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CHHHHHHHHHHHCCSSCEEECTT----CHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHhCCCceEEECCc----HHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE
Confidence 35677888888888887764221 2566666664321 156788888878755554
Done!