BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020247
(329 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556021|ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative [Ricinus communis]
Length = 451
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/295 (84%), Positives = 282/295 (95%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S AER TNFSSSMMK+FQRGLL++RDKEAPRLTESGFQFLLMDTNAQLWYI+REYISN
Sbjct: 156 NSGHAERSTNFSSSMMKIFQRGLLTQRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
S+ERG++ ADLISFLLELSFH+ GEAYN+ L+E Q++MIKD ADLGLVKLQQGRKE+WF
Sbjct: 216 SEERGLDSADLISFLLELSFHITGEAYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLSMSLTDSS+RK+GF+VVETNFRMYAYSTSKLHCEI+RLFS+VEYQLPNL+V
Sbjct: 276 IPTKLATNLSMSLTDSSSRKQGFVVVETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GA+TKESLY+AFENGITAEQIISFLQQNAHPRVA+R+PSVPENV DQIRLWESD+NRVEM
Sbjct: 336 GAMTKESLYSAFENGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
TPAH YDEFPSRDVFEAAC++ARD +GLLWED K+MR+VVKAEIH++MRE+LRGQ
Sbjct: 396 TPAHLYDEFPSRDVFEAACNFARDWNGLLWEDSKRMRMVVKAEIHLNMREYLRGQ 450
>gi|224077128|ref|XP_002305144.1| predicted protein [Populus trichocarpa]
gi|222848108|gb|EEE85655.1| predicted protein [Populus trichocarpa]
Length = 449
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/295 (83%), Positives = 281/295 (95%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
SS QAE+PT+ SSSMMK+FQRGLLS+RD++APRLTE GFQFLLMDTNAQLWYI+REYI+N
Sbjct: 154 SSGQAEKPTSLSSSMMKIFQRGLLSQRDRDAPRLTEGGFQFLLMDTNAQLWYIIREYITN 213
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
S+ERG ADLISFLLELSFHV GEAYN+NTL+EIQ++ IKD A+LGLVKLQQGRKE+WF
Sbjct: 214 SEERGTEPADLISFLLELSFHVTGEAYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWF 273
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+SLTDSS+RK+G++VVETNFR+YAYS+SKLHCEILRLFSK+EYQLPNLIV
Sbjct: 274 IPTKLATNLSVSLTDSSSRKQGYVVVETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIV 333
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLY AFENGIT++QIISFLQQNAHPRVA+R+PSVPENV DQIRLWE+DLNRVE+
Sbjct: 334 GAITKESLYTAFENGITSDQIISFLQQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEI 393
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
TP+H+YDEFPSRD FEAACD+AR+ +GLLWED KKMR+VVKAEIHM+MREFLRGQ
Sbjct: 394 TPSHFYDEFPSRDTFEAACDFAREWNGLLWEDSKKMRVVVKAEIHMNMREFLRGQ 448
>gi|147854406|emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/293 (84%), Positives = 277/293 (94%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
SSTQ E+ TNFSSS+MKVFQRGLL++R+KEAPRLTESGFQFLLMDTNAQLWYI+REYISN
Sbjct: 156 SSTQTEKLTNFSSSLMKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
S+ERG++ ADLISFLLELSFHV GEAYN+NTL+E Q++ IKD DLGLVKLQQGRKE+WF
Sbjct: 216 SEERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLSMSL+D+S+RK+GF+VVETNFR+YAYS+SKLHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLYNAFENGITAEQIISFLQQNAHPRVA+R P+VPENV DQIRLWE+DLNRVE
Sbjct: 336 GAITKESLYNAFENGITAEQIISFLQQNAHPRVAERTPAVPENVTDQIRLWETDLNRVET 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
P+H YDEFPSRDVFEAACD+AR+ GLLWED KKMRLVVKAEIH+HMRE+LR
Sbjct: 396 MPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLR 448
>gi|449433857|ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/295 (82%), Positives = 278/295 (94%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S QAE+P+N SSS+MKVFQ+GLLS+RDKEAPRLTESGFQFLLM+TNAQLWYI+REYISN
Sbjct: 156 NSGQAEKPSNISSSVMKVFQKGLLSQRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ ADLISFLLELSFHV GEAY+++TLS+ Q+ IKD ADLGLVKLQQGRKE+WF
Sbjct: 216 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLSMSL DSS+RK GF+VVETNFRMYAYSTSKLHCEILRLFS++EYQLPNLIV
Sbjct: 276 IPTKLATNLSMSLADSSSRKLGFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLYNAF+NGITAEQI++FLQQNAHPRVA+R+PSVPENV DQIRLWESDLNRV++
Sbjct: 336 GAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDI 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
TPAH+YDEFPSR+VFEAACDYAR+ +GLLWED K +RLVVKA+IH HMRE LR Q
Sbjct: 396 TPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQ 450
>gi|357461579|ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490119|gb|AES71322.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 452
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 234/295 (79%), Positives = 273/295 (92%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
S + ++ N SSS+MKVFQR LLS+RD+EAP+LTESGFQFLLMDTNAQLWYI+REYI+N
Sbjct: 157 SPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITN 216
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
S+ERG++ DLISF+LELSFHV GEAYN+NTL+E Q+++IKD ADLGLVKLQQGRKE+WF
Sbjct: 217 SEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWF 276
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+S+T+SS+RKEGF+VVETNFR+YAYSTSKLHCEILRLFS+VEYQLPNLIV
Sbjct: 277 IPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIV 336
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLYNAF+NGITA+QI+SFL+QNAHPRVA R+P+VPENV DQIRLWESDLNRVEM
Sbjct: 337 GAITKESLYNAFDNGITADQIVSFLRQNAHPRVAQRVPAVPENVTDQIRLWESDLNRVEM 396
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
T A+YYDEFPSRDVFE ACD AR+ SGLLWED KKM LVVK+E+H ++R+FLR Q
Sbjct: 397 TEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQ 451
>gi|358346685|ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355503331|gb|AES84534.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 451
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/295 (78%), Positives = 272/295 (92%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
S + ++ N SSS+MKVFQR LLS+RD+EAP+LTESGFQFLLMDTNAQLWYI+REYI+N
Sbjct: 156 SPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
S+ERG++ DLISF+LELSFHV GEAYN+NTL+E Q+++IKD ADLGLVKLQQGRKE+WF
Sbjct: 216 SEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+S+T+SS+RKEGF+VVETNFR+YAYSTSKLHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLYNAF+NGITA+QI+SF +QNAHPRVA R+P+VPENV DQIRLWESDLNRVEM
Sbjct: 336 GAITKESLYNAFDNGITADQIVSFFRQNAHPRVAQRIPAVPENVTDQIRLWESDLNRVEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
T A+YYDEFPSRDVFE ACD AR+ SGLLWED KKM LVVK+E+H ++R+FLR Q
Sbjct: 396 TEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQ 450
>gi|297800414|ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
gi|297313927|gb|EFH44350.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
Length = 452
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/297 (77%), Positives = 267/297 (89%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S Q E+ T SSSMM++FQRGLLS+RDK+ PRLTESGFQFLLMDTNAQLWYI+REYISN
Sbjct: 156 NSGQGEKLTGISSSMMRIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYISN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ER + ADLISFLLELSFHV GEAYN NTL+E+Q + +KD ADLGLVKLQQGRK++WF
Sbjct: 216 AEERDVEPADLISFLLELSFHVTGEAYNSNTLTEVQNNTLKDLADLGLVKLQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+SL DSSARKEGF+V+ETNFRMYAYSTSKL CEILRLF+++EYQLPNLI
Sbjct: 276 IPTKLATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIA 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
AITKESLYNAF+NGIT++QII+FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EM
Sbjct: 336 CAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLKRIEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
T AH+YDEFPS+DVFEAACD+AR+ GLLWED K+MRLVVK+E+H MREFL Q K
Sbjct: 396 TQAHFYDEFPSKDVFEAACDFAREWGGLLWEDSKRMRLVVKSEVHNQMREFLHNQTK 452
>gi|356548733|ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/295 (77%), Positives = 270/295 (91%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
S +Q E+P N SSS+MKVFQR +LS RDKEAP+LTESGFQFLLMDTNAQLWYI+REYISN
Sbjct: 156 SPSQVEKPLNISSSLMKVFQRRILSYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
S++RG++ ADLISF+LELSFH GEAY+++TL+ Q+++I D ADLGLVK+QQGRK +WF
Sbjct: 216 SEDRGVDAADLISFMLELSFHDIGEAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLSMSL DSS+RK+GF+VVETNFR+YAYSTSKLHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTKLATNLSMSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLY+AFENGITAEQII+FLQQNAHPRVA+R+PSVPENV +QIRLWE+DLNRVEM
Sbjct: 336 GAITKESLYSAFENGITAEQIITFLQQNAHPRVAERIPSVPENVTEQIRLWEADLNRVEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
T A+YYDEFPSRDVFE ACD AR+ +GLLWED KKM +VVK E+H ++R++LR Q
Sbjct: 396 TDAYYYDEFPSRDVFEGACDCAREWNGLLWEDSKKMHMVVKTEVHQYVRDYLRRQ 450
>gi|356521347|ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 228/295 (77%), Positives = 270/295 (91%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
S +Q E+P N SSS+MKVFQR +LS RDKEAP+LTESGFQFLLMDTNAQLWYI+REYISN
Sbjct: 156 SPSQVEKPLNISSSLMKVFQRRILSHRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
S++RG++ ADLISF+LELSFHV GEAY+++TL+ Q+++I D ADLGLVK+QQGRK +WF
Sbjct: 216 SEDRGVDAADLISFMLELSFHVIGEAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLSMSL DSS+RK+GF+VVETNFR+YAYSTSKLHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTKLATNLSMSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLY+A+ENGITAEQI++FLQQNAHPRVA+R+PSVPENV +QIRLWE+DLNRVEM
Sbjct: 336 GAITKESLYSAYENGITAEQIVTFLQQNAHPRVAERVPSVPENVTEQIRLWEADLNRVEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
T +YYDEFPSRDVFE ACD AR+ +GLLWED KKM +VVK E+H ++R++LR Q
Sbjct: 396 TDTYYYDEFPSRDVFEGACDCAREWNGLLWEDSKKMHMVVKTEVHPYVRDYLRRQ 450
>gi|42566894|ref|NP_193435.2| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|51969678|dbj|BAD43531.1| unnamed protein product [Arabidopsis thaliana]
gi|115646777|gb|ABJ17114.1| At4g17020 [Arabidopsis thaliana]
gi|332658439|gb|AEE83839.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 452
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 228/297 (76%), Positives = 269/297 (90%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S Q E+ T SSSMMK+FQRGLLS+RDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N
Sbjct: 156 NSGQGEKLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ER ++ ADLISFLLELSFHV G+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK++WF
Sbjct: 216 AEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+SL DSSARKEGF+V+ETNFRMYAYSTSKL CEILRLF+++EYQLPNLI
Sbjct: 276 IPTKLATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIA 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
AITKESLYNAF+NGIT++QII+FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EM
Sbjct: 336 CAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
T AH+YDEFPS+DVFEAACD+AR+ GLLWED K+MRLVVK+E+H MREFL Q++
Sbjct: 396 TQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|42572935|ref|NP_974564.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658438|gb|AEE83838.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 462
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 228/297 (76%), Positives = 269/297 (90%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S Q E+ T SSSMMK+FQRGLLS+RDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N
Sbjct: 156 NSGQGEKLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ER ++ ADLISFLLELSFHV G+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK++WF
Sbjct: 216 AEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+SL DSSARKEGF+V+ETNFRMYAYSTSKL CEILRLF+++EYQLPNLI
Sbjct: 276 IPTKLATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIA 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
AITKESLYNAF+NGIT++QII+FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EM
Sbjct: 336 CAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
T AH+YDEFPS+DVFEAACD+AR+ GLLWED K+MRLVVK+E+H MREFL Q++
Sbjct: 396 TQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|334186626|ref|NP_001190745.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658440|gb|AEE83840.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 482
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 228/296 (77%), Positives = 268/296 (90%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S Q E+ T SSSMMK+FQRGLLS+RDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N
Sbjct: 156 NSGQGEKLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ER ++ ADLISFLLELSFHV G+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK++WF
Sbjct: 216 AEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+SL DSSARKEGF+V+ETNFRMYAYSTSKL CEILRLF+++EYQLPNLI
Sbjct: 276 IPTKLATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIA 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
AITKESLYNAF+NGIT++QII+FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EM
Sbjct: 336 CAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
T AH+YDEFPS+DVFEAACD+AR+ GLLWED K+MRLVVK+E+H MREFL Q+
Sbjct: 396 TQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQS 451
>gi|51969958|dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]
Length = 452
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 228/297 (76%), Positives = 268/297 (90%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S Q E+ T SSSMMK+FQRGLLS+RDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N
Sbjct: 156 NSGQGEKLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ER ++ ADLISFLLELSFHV G+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK++WF
Sbjct: 216 AEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS+SL DSSARKEGF+V+ETNFRMYAYSTSKL CEILRLF+++EYQLPNLI
Sbjct: 276 IPTKLATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIA 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
AITKESLYNAF NGIT++QII+FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EM
Sbjct: 336 CAITKESLYNAFGNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
T AH+YDEFPS+DVFEAACD+AR+ GLLWED K+MRLVVK+E+H MREFL Q++
Sbjct: 396 TQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|32487401|emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]
Length = 451
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/293 (76%), Positives = 265/293 (90%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q ER T+FSSSMM+ FQRGLLS RD EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+
Sbjct: 156 NSSQVERGTSFSSSMMRTFQRGLLSSRDGEAPRLTENGFQFLLMETNAQLWYIMREYISS 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ +LISFLLELSFH GEAY+LNTL+++Q++ I+D A+LGLVKLQQGRK++WF
Sbjct: 216 AEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS SL+DSS+ KEGF+VVETNFRMYAYSTS+LHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
G+ITKESLY AFENGITAEQIISFLQQNAHPRVAD++P+VPENV DQIRLWE+D NRV+M
Sbjct: 336 GSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
T +H Y++FPS+D+F+ CDYARD LLWED KKMRL+V+ E H MREFLR
Sbjct: 396 TLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 448
>gi|218195833|gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indica Group]
Length = 459
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/301 (74%), Positives = 265/301 (88%), Gaps = 8/301 (2%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q ER T+FSSSMM+ FQRGLLS RD EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+
Sbjct: 156 NSSQVERGTSFSSSMMRTFQRGLLSSRDGEAPRLTENGFQFLLMETNAQLWYIMREYISS 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQ------- 145
++ERG++ +LISFLLELSFH GEAY+LNTL+++Q++ I+D A+LGLVKLQQ
Sbjct: 216 AEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQMSRVKPW 275
Query: 146 -GRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
GRK++WFIPTKLATNLS SL+DSS+ KEGF+VVETNFRMYAYSTS+LHCEILRLFS+VE
Sbjct: 276 QGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVE 335
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWE 264
YQLPNLIVG+ITKESLY AFENGITAEQIISFLQQNAHPRVAD++P+VPENV DQIRLWE
Sbjct: 336 YQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWE 395
Query: 265 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFL 324
+D NRV+MT +H Y++FPS+D+F+ CDYARD LLWED KKMRL+V+ E H MREFL
Sbjct: 396 TDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFL 455
Query: 325 R 325
R
Sbjct: 456 R 456
>gi|414584751|tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 451
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/295 (73%), Positives = 263/295 (89%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q E+ ++FSSSMMK FQRGLLS RD EA +LTE+GFQFLLM+TNAQLWYI+REYIS+
Sbjct: 156 NSSQVEKGSSFSSSMMKTFQRGLLSSRDGEASKLTENGFQFLLMETNAQLWYIMREYISS 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ +LISFLLELSFH G AY+LNTL+++Q+ I+D A+LGLVK QQGRK++WF
Sbjct: 216 AEERGVDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPT+LATNLS SL+DSS+ KEGF+VVETNFRMYAYSTSKLHCEILRLF++VEYQLPNLIV
Sbjct: 276 IPTQLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GA+TKES+Y AFENGITAEQIISFL+QNAHPRVAD++P+VPENV DQIRLWE+DLNRVEM
Sbjct: 336 GAVTKESIYGAFENGITAEQIISFLRQNAHPRVADKIPAVPENVTDQIRLWETDLNRVEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
P+H Y++FPS++ FE CDYARD LLWEDPK+MRL+V+ E H MREFLR Q
Sbjct: 396 IPSHLYEDFPSKEWFEQCCDYARDNGYLLWEDPKRMRLIVRGEFHPEMREFLRRQ 450
>gi|242074798|ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
gi|241938518|gb|EES11663.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
Length = 451
Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/295 (73%), Positives = 259/295 (87%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q E+ T+FSSSMMK FQRGLLS RD EA +LTE+GFQFLLM+TNAQLWYI+REYIS+
Sbjct: 156 NSSQVEKGTSFSSSMMKTFQRGLLSSRDGEASKLTENGFQFLLMETNAQLWYIMREYISS 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ +LISFLLELSFH G AY+LNTL+++Q+ I+D A+LGLVK QQGR + WF
Sbjct: 216 AEERGVDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVKQQQGRTDRWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPT+LATNLS SL+DSS+ KEGF+VVETNFRMYAYSTSKLHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTQLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GA+TKES+Y AFENGITAEQIISFL+QNAHPRVAD++P+VPENV DQIRLWE+D NRVEM
Sbjct: 336 GAVTKESIYGAFENGITAEQIISFLRQNAHPRVADKIPTVPENVTDQIRLWETDRNRVEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
P+H Y++FPS++ FE CDYARD LLWED K+MRL+V+ E H MREFLR Q
Sbjct: 396 IPSHLYEDFPSKEWFEQCCDYARDNGYLLWEDSKRMRLIVRGEFHPEMREFLRRQ 450
>gi|357166758|ref|XP_003580836.1| PREDICTED: general transcription factor IIH subunit 4-like
[Brachypodium distachyon]
Length = 451
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/295 (72%), Positives = 258/295 (87%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q ER T+FSSSMMK FQRGLLS RD +AP+L+E+GFQFLLM+TNAQLWYI+REYIS+
Sbjct: 156 NSSQVERGTSFSSSMMKTFQRGLLSSRDGDAPKLSENGFQFLLMETNAQLWYIMREYISS 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ +LISFLLELSFH G AY+ NTL+++Q+ I+D A+LGLVK+QQGRK++WF
Sbjct: 216 AEERGVDPTELISFLLELSFHTLGAAYSFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS SL+DSSA KEG +VVETNFR+YAYS S+LHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTKLATNLSSSLSDSSASKEGIVVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLY AF+NGITAEQIISFL+QNAHPRVAD++P VPENV DQIRLWE+D NRV+M
Sbjct: 336 GAITKESLYGAFDNGITAEQIISFLKQNAHPRVADKIPVVPENVTDQIRLWETDRNRVDM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
+H Y++FPS+D+FE CD ARD LLWED KKMRL+V+ E H MREFLR Q
Sbjct: 396 VLSHVYEDFPSKDMFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQEMREFLRRQ 450
>gi|326510735|dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 451
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/295 (73%), Positives = 254/295 (86%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q E+ T FSSSMMK FQRGLLS RD EA +L+E+GFQFLLM+TNAQLWYI+REYIS+
Sbjct: 156 NSSQVEKGTTFSSSMMKTFQRGLLSSRDGEAAKLSENGFQFLLMETNAQLWYIMREYISS 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ DLISFLLELSFH G AY+L+TL+E+Q+ + D +LGLVKLQQGRK++WF
Sbjct: 216 AEERGVDPTDLISFLLELSFHTQGAAYSLSTLTEVQRIAVMDLMELGLVKLQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS SL+DS+A KEG +VVETNFR+YAYS SKLHCEILRLFS+VEYQLPNLIV
Sbjct: 276 IPTKLATNLSSSLSDSAASKEGIVVVETNFRLYAYSASKLHCEILRLFSRVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLY AF+NGITAEQIISFLQQNAHPRV D++P VPENV DQIRLWE+D NRVEM
Sbjct: 336 GAITKESLYGAFDNGITAEQIISFLQQNAHPRVIDKIPIVPENVTDQIRLWENDRNRVEM 395
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
+H Y++FPS+D+FE CD+ARD LLWED KKMRL+V E H MREFLR Q
Sbjct: 396 ILSHVYEDFPSKDMFEQCCDHARDNGYLLWEDAKKMRLIVSGEFHQEMREFLRRQ 450
>gi|357123176|ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 4-like [Brachypodium distachyon]
Length = 452
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/295 (72%), Positives = 256/295 (86%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q ER T+FSSSMMK FQRGLLS RD +AP+L+E+GFQFLLM+TN QLWYI+REYIS+
Sbjct: 157 NSSQVERGTSFSSSMMKTFQRGLLSSRDGDAPKLSENGFQFLLMETNVQLWYIMREYISS 216
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ +LISFLLELSFH G AY+ NTL+++Q+ I+D A+LGLVK+QQGRK++WF
Sbjct: 217 AEERGVDPTELISFLLELSFHTLGAAYSFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWF 276
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPTKLATNLS SL+DSSA KEG +VVETNFR+YAYS S+LHCEILRLFS+VEYQLPNLIV
Sbjct: 277 IPTKLATNLSSSLSDSSASKEGIVVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIV 336
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
GAITKESLY AF+NGITAEQIISFL+QNAHP VAD++P VPENV DQIRLWE+D NRV+M
Sbjct: 337 GAITKESLYGAFDNGITAEQIISFLKQNAHPXVADKIPVVPENVTDQIRLWETDRNRVDM 396
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
+H Y++FPS+D+FE CD ARD LLWED KKMRL+V+ E H MREFLR Q
Sbjct: 397 VLSHVYEDFPSKDLFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQEMREFLRRQ 451
>gi|222629781|gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
Length = 427
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/266 (76%), Positives = 242/266 (90%)
Query: 60 DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAY 119
D EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+++ERG++ +LISFLLELSFH GEAY
Sbjct: 159 DGEAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGEAY 218
Query: 120 NLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVE 179
+LNTL+++Q++ I+D A+LGLVKLQQGRK++WFIPTKLATNLS SL+DSS+ KEGF+VVE
Sbjct: 219 SLNTLTDVQRNAIRDLAELGLVKLQQGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVE 278
Query: 180 TNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 239
TNFRMYAYSTS+LHCEILRLFS+VEYQLPNLIVG+ITKESLY AFENGITAEQIISFLQQ
Sbjct: 279 TNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQ 338
Query: 240 NAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSG 299
NAHPRVAD++P+VPENV DQIRLWE+D NRV+MT +H Y++FPS+D+F+ CDYARD
Sbjct: 339 NAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGC 398
Query: 300 LLWEDPKKMRLVVKAEIHMHMREFLR 325
LLWED KKMRL+V+ E H MREFLR
Sbjct: 399 LLWEDAKKMRLIVRVEFHSEMREFLR 424
>gi|90399251|emb|CAJ86205.1| B0213E10.4 [Oryza sativa Indica Group]
Length = 470
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/266 (68%), Positives = 216/266 (81%), Gaps = 28/266 (10%)
Query: 60 DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAY 119
D EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+++ERG++ +LISFLLELSFH GEAY
Sbjct: 230 DGEAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGEAY 289
Query: 120 NLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVE 179
+LNTL+++Q++ I+D A+LGLVKLQQ GF+VVE
Sbjct: 290 SLNTLTDVQRNAIRDLAELGLVKLQQ----------------------------GFVVVE 321
Query: 180 TNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 239
TNFRMYAYSTS+LHCEILRLFS+VEYQLPNLIVG+ITKESLY AFENGITAEQIISFLQQ
Sbjct: 322 TNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQ 381
Query: 240 NAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSG 299
NAHPRVAD++P+VPENV DQIRLWE+D NRV+MT +H Y++FPS+D+F+ CDYARD
Sbjct: 382 NAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGC 441
Query: 300 LLWEDPKKMRLVVKAEIHMHMREFLR 325
LLWED KKMRL+V+ E H MREFLR
Sbjct: 442 LLWEDAKKMRLIVRVEFHSEMREFLR 467
>gi|414584750|tpg|DAA35321.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 386
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 172/228 (75%), Positives = 209/228 (91%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S+Q E+ ++FSSSMMK FQRGLLS RD EA +LTE+GFQFLLM+TNAQLWYI+REYIS+
Sbjct: 156 NSSQVEKGSSFSSSMMKTFQRGLLSSRDGEASKLTENGFQFLLMETNAQLWYIMREYISS 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ +LISFLLELSFH G AY+LNTL+++Q+ I+D A+LGLVK QQGRK++WF
Sbjct: 216 AEERGVDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWF 275
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
IPT+LATNLS SL+DSS+ KEGF+VVETNFRMYAYSTSKLHCEILRLF++VEYQLPNLIV
Sbjct: 276 IPTQLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIV 335
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQI 260
GA+TKES+Y AFENGITAEQIISFL+QNAHPRVAD++P+VPENV DQ+
Sbjct: 336 GAVTKESIYGAFENGITAEQIISFLRQNAHPRVADKIPAVPENVTDQV 383
>gi|115461368|ref|NP_001054284.1| Os04g0680000 [Oryza sativa Japonica Group]
gi|113565855|dbj|BAF16198.1| Os04g0680000 [Oryza sativa Japonica Group]
Length = 444
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 165/252 (65%), Positives = 201/252 (79%), Gaps = 28/252 (11%)
Query: 72 QFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSM 131
+F LM+TNAQLWYI+REYIS+++ERG++ +LISFLLELSFH GEAY+LNTL+++Q++
Sbjct: 214 EFKLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNA 273
Query: 132 IKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSK 191
I+D A+LGLVKLQQ GF+VVETNFRMYAYSTS+
Sbjct: 274 IRDLAELGLVKLQQ----------------------------GFVVVETNFRMYAYSTSR 305
Query: 192 LHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS 251
LHCEILRLFS+VEYQLPNLIVG+ITKESLY AFENGITAEQIISFLQQNAHPRVAD++P+
Sbjct: 306 LHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPA 365
Query: 252 VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLV 311
VPENV DQIRLWE+D NRV+MT +H Y++FPS+D+F+ CDYARD LLWED KKMRL+
Sbjct: 366 VPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLI 425
Query: 312 VKAEIHMHMREF 323
V+ E H M ++
Sbjct: 426 VRVEFHSEMHDY 437
>gi|167997877|ref|XP_001751645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697626|gb|EDQ83962.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 157/284 (55%), Positives = 224/284 (78%), Gaps = 2/284 (0%)
Query: 47 MMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISF 106
++KVFQR L + E+P LT+ GFQFLLMDTN+QLW +VREY+++S++RG + +L+ F
Sbjct: 171 IIKVFQRSGLLTPENESPSLTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGF 230
Query: 107 LLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT 166
LLEL FH+ GEAY++N+LS + ++ + A LGLVKLQQG KE+W+IPTKLA+NLS SL+
Sbjct: 231 LLELGFHLVGEAYSVNSLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLASNLSASLS 290
Query: 167 DSS--ARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 224
+S+ EGF+VVETNF++YAY++SKL EILR F+++EYQLPNL+V +TKES+ A
Sbjct: 291 ESTDWQSSEGFVVVETNFKVYAYTSSKLQTEILRCFTRLEYQLPNLVVATLTKESVNKAL 350
Query: 225 ENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 284
+GI+AEQIISFL+++AHP VA ++P VPE V DQ+RLWE+D NRV+ PA++YD+FP+
Sbjct: 351 GSGISAEQIISFLRKHAHPHVAQKIPVVPETVSDQLRLWETDRNRVQFEPAYFYDDFPTM 410
Query: 285 DVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
++EA +ARD GLL+ED RL+V++++H MR+++R Q+
Sbjct: 411 AIYEAVVAHARDLGGLLFEDASAKRLIVRSDLHEDMRQYIRKQS 454
>gi|296084734|emb|CBI25875.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/256 (60%), Positives = 183/256 (71%), Gaps = 26/256 (10%)
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
ERG++ ADLISFLLELSFHV GEAYN+NTL+E Q++ IKD DLGLVKLQQGRKE+WFIP
Sbjct: 1 ERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIP 60
Query: 155 TKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI--- 211
TKLATNLSMSL+D+S+RK+GF+VVETNFR+YAYS+SKLHCEILRLFS+ L + +
Sbjct: 61 TKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRYASMLFDCLLCI 120
Query: 212 -----------VGAITKESLYNAFENGITAEQIISFLQQNAHP-----------RVADRM 249
V I E L F G S + A P +A+++
Sbjct: 121 CYSSQKGTLLDVSLIMYECL-RTFSLGKIIFWFFSSVSTVATPCHGYLVIFTISCLAEKI 179
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
P + QIRLWE+DLNRVE P+H YDEFPSRDVFEAACD+AR+ GLLWED KKMR
Sbjct: 180 PCLQFTNMSQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMR 239
Query: 310 LVVKAEIHMHMREFLR 325
LVVKAEIH+HMRE+LR
Sbjct: 240 LVVKAEIHLHMREYLR 255
>gi|302806060|ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
gi|302808297|ref|XP_002985843.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300146350|gb|EFJ13020.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300147366|gb|EFJ14030.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
Length = 459
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 214/284 (75%), Gaps = 2/284 (0%)
Query: 47 MMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISF 106
++++FQ+ L ++ P++T +GFQFLL+D N+QLW ++REY+ ++ R I+ +LI F
Sbjct: 175 IVQLFQKADLLTSGQD-PKITPAGFQFLLLDRNSQLWRVIREYVQYAEARQIDTGELIRF 233
Query: 107 LLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT 166
LLE+ F+ GE Y++++L Q++ ++ A LG+++LQ+G K+ WFIPT+LAT LS SL+
Sbjct: 234 LLEIGFYSVGEPYSMDSLPNSQRNFAEELAMLGVLQLQKGMKDRWFIPTRLATGLSASLS 293
Query: 167 DSSA-RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFE 225
+SSA + EGFI+VETNFR+YAY++SKLH E L +F + EY LPN++VG+ITKES+ AF
Sbjct: 294 ESSAWQTEGFIMVETNFRVYAYTSSKLHIETLHVFVRTEYVLPNILVGSITKESVNGAFA 353
Query: 226 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
+GI+A+QII FLQQ+AHP VA ++PSVPE VCDQIRLWESD RV+ PA+ Y+ FPS
Sbjct: 354 SGISADQIIKFLQQHAHPFVAQKVPSVPETVCDQIRLWESDRVRVQYLPAYCYEGFPSTS 413
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
V+E+ +ARD++GLLWED + +VV E H +R FL+ NK
Sbjct: 414 VYESVVAHARDRNGLLWEDANRKMIVVGGEHHEAIRAFLQNINK 457
>gi|359497087|ref|XP_002267711.2| PREDICTED: general transcription factor IIH subunit 4-like [Vitis
vinifera]
Length = 238
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 144/232 (62%), Positives = 168/232 (72%), Gaps = 43/232 (18%)
Query: 94 QERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFI 153
QERG++ ADLISFLLELSFHV GEAYN+NTL+E Q++ IKD DLGLVKLQQGRKE+WFI
Sbjct: 47 QERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFI 106
Query: 154 PTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
PTKLATNLSMSL+D+S+RK+GF+VVETNFR+YAYS+SKLHCEILRLFS+
Sbjct: 107 PTKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRSS--------- 157
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMT 273
+S + H + IRLWE+DLNRVE
Sbjct: 158 --------------------VSTVATPCHGYL--------------IRLWETDLNRVETM 183
Query: 274 PAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
P+H YDEFPSRDVFEAACD+AR+ GLLWED KKMRLVVKAEIH+HMRE+LR
Sbjct: 184 PSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLR 235
>gi|449521313|ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like,
partial [Cucumis sativus]
Length = 296
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/140 (80%), Positives = 131/140 (93%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
+S QAE+P+N SSS+MKVFQ+GLLS+RDKEAPRLTESGFQFLLM+TNAQLWYI+REYISN
Sbjct: 156 NSGQAEKPSNISSSVMKVFQKGLLSQRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
++ERG++ ADLISFLLELSFHV GEAY+++TLS+ Q+ IKD ADLGLVKLQQGRKE+WF
Sbjct: 216 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 275
Query: 153 IPTKLATNLSMSLTDSSARK 172
IPTKLATNLSMSL DSS+RK
Sbjct: 276 IPTKLATNLSMSLADSSSRK 295
>gi|147899535|ref|NP_001085110.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
laevis]
gi|47939830|gb|AAH72322.1| MGC83106 protein [Xenopus laevis]
Length = 455
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 183/282 (64%), Gaps = 3/282 (1%)
Query: 50 VFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLE 109
+ Q GL+ EAP ++ +GFQFLL+DT +QLWY + +Y+ +++ RG+N +++SF+ +
Sbjct: 173 LIQAGLMKNESGEAPCISSAGFQFLLLDTPSQLWYFMLQYLKSAESRGMNLVEILSFMFQ 232
Query: 110 LSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS- 168
LSF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NL+ ++ S
Sbjct: 233 LSFSTLGKDYSVEGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSV 291
Query: 169 -SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENG 227
+ K+GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+E++ A NG
Sbjct: 292 VDSHKQGFIVVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNG 351
Query: 228 ITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 287
ITAEQII FL+ AHP + + P++P + DQIRLWE + +R+ + Y++F S+ F
Sbjct: 352 ITAEQIIHFLRTRAHPVMLQQNPALPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDF 411
Query: 288 EAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
E +YARD L++E+P K +VV H ++ F + Q +
Sbjct: 412 ELLRNYARDLGVLVFENPAKRVMVVTPGGHSDVKRFWKRQKQ 453
>gi|290987279|ref|XP_002676350.1| predicted protein [Naegleria gruberi]
gi|284089952|gb|EFC43606.1| predicted protein [Naegleria gruberi]
Length = 532
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 186/307 (60%), Gaps = 15/307 (4%)
Query: 35 TQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQ 94
T AE FS ++ ++ + L ++ + R+T GFQFLL +T Q+W +++ Y+ S
Sbjct: 224 TAAESEQTFSGNVNELLKYSQLIKKS-DTVRITNEGFQFLLQETKVQVWKLLKHYLETSG 282
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN---- 150
+R + ++++F+ EL F G+ Y+ L+ QKS++ DF DLG++ L + +K+
Sbjct: 283 QRNQVKNEILNFIFELGFLDVGKEYSSKDLTSTQKSLLVDFNDLGIIYLHRDKKKKIKDK 342
Query: 151 WFIPTKLATNLSMSLTDS----------SARKEGFIVVETNFRMYAYSTSKLHCEILRLF 200
+F PT LA +L++S++ S ++ G+I+VETN+R+YAY+ S L +L LF
Sbjct: 343 YFFPTPLAKSLTVSMSTSYDLISSFGSHNSINNGYIIVETNYRVYAYTNSPLQIALLSLF 402
Query: 201 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQI 260
EY+LPN++VG IT+ ++ A +NGI+A QI+ FL+ NAHP++ + P +P+ V DQI
Sbjct: 403 IFPEYRLPNMVVGLITRSTIREALKNGISAHQILQFLRLNAHPQMRLKKPVIPDTVSDQI 462
Query: 261 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHM 320
LWE + NRV T + YD+F + A DYAR Q LLW +KM +V K E H M
Sbjct: 463 LLWEKERNRVIKTTSVVYDKFTNVSELNATVDYARRQGALLWHSEEKMMMVCKREFHGLM 522
Query: 321 REFLRGQ 327
+EF+ Q
Sbjct: 523 KEFISSQ 529
>gi|260810774|ref|XP_002600123.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
gi|229285409|gb|EEN56135.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
Length = 457
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 195/325 (60%), Gaps = 25/325 (7%)
Query: 14 LLQGFQPWRTLRPMP----------LDNGSSTQAERPTNF---------SSSMMKVFQRG 54
LL G +PW ++ +P LD S + E NF S +M++ +
Sbjct: 117 LLGGGKPWFSVVQLPPDKHAKDVAALDTYSLERWEVLLNFIVGSGEAQVSKDIMEILIKS 176
Query: 55 LLSRRDKEA--PRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSF 112
L + ++ + P +T +GFQFLLMDT +Q+WYI+ +Y+ Q RG+N + + FL ++SF
Sbjct: 177 GLMKSEEGSLHPTITPAGFQFLLMDTPSQVWYIILQYLDTMQSRGLNLVEALQFLFQISF 236
Query: 113 HVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA-- 170
G+ Y +S+ + ++ +LGLV Q+ RK F PT+LA +L+ ++D
Sbjct: 237 STLGKDYPTEGMSDSMQQFLQHLRELGLVN-QRKRKSGRFYPTRLAIHLASGISDVEKDF 295
Query: 171 RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITA 230
KEG++VVE+N+R+YAY+ S+L ++ LFS++ Y+ PN++V +T++S+ A GITA
Sbjct: 296 HKEGYLVVESNYRIYAYTDSELQVALIGLFSEILYRFPNMVVANLTRDSVQEAVVRGITA 355
Query: 231 EQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 290
+QI+ FL+ NAHP+ R+P VP + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 356 DQILHFLRVNAHPKALHRVPIVPPTISDQIRLWEMERDRLTFTEGVLYNQFLSQPDFEML 415
Query: 291 CDYARDQSGLLWE-DPKKMRLVVKA 314
+YA+D LLWE +PK++ +V KA
Sbjct: 416 RNYAKDLGVLLWENNPKRLMVVSKA 440
>gi|384246869|gb|EIE20357.1| Tfb2-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 451
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 184/313 (58%), Gaps = 9/313 (2%)
Query: 19 QPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDT 78
Q W + +PL N ++F+S ++ L+ E+ + E GFQFLL DT
Sbjct: 139 QQWEVIT-VPLLNQLKCTCGLGSSFAS--LQTLMLYLVGSICAESRSIEEQGFQFLLSDT 195
Query: 79 NAQLWYIVREYISNSQER-GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFAD 137
+QLW ++R YI++ +ER G +++FLL+L F G + L+ L + Q+ + D A
Sbjct: 196 YSQLWRLLRAYIASGEERSGAPLGTILNFLLQLGFREVGSPFALSGLDDSQRHIAADMAQ 255
Query: 138 LGLVKLQQGRKEN-WFIPTKLATNLSMSLTDSSAR--KEGFIVVETNFRMYAYSTSKLHC 194
LGL+ + + W PT+LA L+ + + +GF+VVETN+R+YAY++S L
Sbjct: 256 LGLLMPFTAKDGSVWLAPTRLALALAGGSSGQAQHDVTDGFVVVETNYRVYAYTSSLLQT 315
Query: 195 EILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPE 254
+LRLF++ E LPNL VG +T+ES+ A G++A+QI+ +L+Q+AHP VA R P VPE
Sbjct: 316 ALLRLFTRCECILPNLFVGVLTRESVTGALACGLSADQIVLYLRQHAHPHVASRTPVVPE 375
Query: 255 NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKK--MRLVV 312
V DQ+RLW++D RV A YD+FPS VF+ + AR LWEDPK RL V
Sbjct: 376 VVADQVRLWQADTMRVRHNRAVLYDDFPSAQVFQLSAQKARTLGVWLWEDPKAGMGRLAV 435
Query: 313 KAEIHMHMREFLR 325
+ H MRE+++
Sbjct: 436 QEAGHDAMREYIK 448
>gi|62751795|ref|NP_001015845.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
gi|58475911|gb|AAH90134.1| general transcription factor II H, polypeptide 4 [Xenopus
(Silurana) tropicalis]
gi|89272862|emb|CAJ82116.1| transcription factor tfb2 [Xenopus (Silurana) tropicalis]
gi|114107989|gb|AAI22900.1| gtf2h4 protein [Xenopus (Silurana) tropicalis]
Length = 455
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 180/281 (64%), Gaps = 3/281 (1%)
Query: 50 VFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLE 109
+ Q GL+ EAP ++ +GFQFLL+DT +QLWY + +Y+ +++ RG+ +++SF+ +
Sbjct: 173 LIQAGLMKSESGEAPCISSAGFQFLLLDTPSQLWYFMLQYLKSAESRGMILVEILSFMFQ 232
Query: 110 LSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS- 168
LSF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NL+ ++ S
Sbjct: 233 LSFSTLGKDYSVEGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSV 291
Query: 169 -SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENG 227
+ K+GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+E++ A NG
Sbjct: 292 VDSHKQGFIVVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNG 351
Query: 228 ITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 287
ITAEQII FL+ AHP + + P +P + DQIRLWE + +R+ + Y++F S+ F
Sbjct: 352 ITAEQIIHFLRTRAHPVMLQQNPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDF 411
Query: 288 EAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
E +YARD L++E+P K +VV H ++ F + Q
Sbjct: 412 ELLRNYARDLGVLVFENPAKRVMVVTPGGHSDVKRFWKRQK 452
>gi|72074363|ref|XP_796111.1| PREDICTED: general transcription factor IIH subunit 4
[Strongylocentrotus purpuratus]
Length = 469
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 169/269 (62%), Gaps = 3/269 (1%)
Query: 63 APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN 122
P +T SGFQFLL+DT +Q+W+ + +Y+ SQ RG++ D +SFL +LSF G+ Y+
Sbjct: 198 TPVITPSGFQFLLLDTPSQVWFFMLQYLETSQARGLDIVDALSFLFQLSFSTLGKDYSSE 257
Query: 123 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--RKEGFIVVET 180
++E Q ++ +LGLV Q+ RK + PT+LA NL+ ++ + K+GFIVVET
Sbjct: 258 GMTEQQLHFLQHLRELGLV-FQRKRKSMRYYPTRLAINLASGVSSMAKDDHKDGFIVVET 316
Query: 181 NFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 240
NFR+YAY+ S L EIL LF + Y+ PNL V A+T+ES+ A NGITAEQI+SFL+ +
Sbjct: 317 NFRVYAYTESDLQVEILGLFCSMMYRFPNLSVAALTRESVQLAISNGITAEQILSFLRTH 376
Query: 241 AHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
AHP + + P VP + DQ+RLWE + +R+ T Y+EF S FE DYA+D L
Sbjct: 377 AHPNMRLKTPIVPPTISDQVRLWELERDRLSFTQGIIYNEFLSLHDFEVLRDYAKDLGVL 436
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+W+ + ++V H ++++ + K
Sbjct: 437 IWDSTARRIMIVSPAGHDSVKKYWKRLKK 465
>gi|327266348|ref|XP_003217968.1| PREDICTED: general transcription factor IIH subunit 4-like [Anolis
carolinensis]
Length = 460
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 179/278 (64%), Gaps = 4/278 (1%)
Query: 54 GLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSF 112
GL+ S E P +T SGFQFLL+DT++QLWY + +Y+ +++ RG++ +++SFL +LSF
Sbjct: 181 GLMKSSEPGEPPCITSSGFQFLLLDTSSQLWYFMLQYLQSAETRGMDLVEILSFLFQLSF 240
Query: 113 HVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS--A 170
G+ Y++ +SE + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 241 STLGKDYSVEGMSESLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGISGITIDT 299
Query: 171 RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITA 230
R +GFI+VETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+ES+ A NGITA
Sbjct: 300 RNQGFIIVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRESVQQAIANGITA 359
Query: 231 EQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 290
+QII FL+ AHP + + P +P + DQIRLWE + +R+ + Y++F S+ FE
Sbjct: 360 DQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELL 419
Query: 291 CDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
D+AR+ L++E+P K +VV H ++ F + Q
Sbjct: 420 RDHARELGVLIFENPSKRLMVVTPAGHSDVKRFWKRQK 457
>gi|432883135|ref|XP_004074222.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryzias
latipes]
Length = 460
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 181/298 (60%), Gaps = 11/298 (3%)
Query: 40 PTNFSSSMMKVF-QRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGI 98
P+ S + ++ Q GL+ EAP +T +GFQFLL+DT +QLWY+ +Y++ +Q RG+
Sbjct: 160 PSAVSQDLAQLLVQAGLMKSEAGEAPYITSAGFQFLLLDTASQLWYLTLQYLNTAQSRGM 219
Query: 99 NQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLA 158
+++SFL +LSF G Y++ +SE + ++ + GLV Q+ RK + PT+LA
Sbjct: 220 ELVEILSFLFQLSFSTLGRDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLA 278
Query: 159 TNLSMSLTDSSARK---------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
L+ ++ +S GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN
Sbjct: 279 ITLAAGVSSNSPSNMTNTPGTGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPN 338
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNR 269
++V +T+ES+ A NGITA+QII FL+ AHP + + P++P + DQIRLWE + +R
Sbjct: 339 VVVAHLTRESVQQAIANGITAQQIIHFLRTRAHPVMLKQSPALPPTITDQIRLWELERDR 398
Query: 270 VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
++ T Y++F S+ FE D A+ L+W+D +VV + H +++F + Q
Sbjct: 399 LQFTEGVLYNQFLSQADFEVLRDRAQGLGCLVWQDASHRAMVVTPQGHSEVKKFWKRQ 456
>gi|41053973|ref|NP_956221.1| general transcription factor IIH subunit 4 [Danio rerio]
gi|39794736|gb|AAH64301.1| General transcription factor IIH, polypeptide 4 [Danio rerio]
Length = 466
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 173/293 (59%), Gaps = 15/293 (5%)
Query: 50 VFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLE 109
+ Q GL+ EAP +T +GFQFLL+DT +QLWY +Y+ +Q RG++ +++SFL +
Sbjct: 172 LIQAGLMKSETGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQ 231
Query: 110 LSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS 169
LSF G Y++ +SE + ++ + GLV Q+ RK + PT+LA L+ +T +
Sbjct: 232 LSFSTLGRDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTANP 290
Query: 170 ARKE--------------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAI 215
A GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +
Sbjct: 291 ASGSASSALGAIPGTGDTGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNLVVAQV 350
Query: 216 TKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPA 275
T+ES+ A NGITA+QII FL+ AHP + + P +P + DQIRLWE + +R++ T
Sbjct: 351 TRESVQQAISNGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEG 410
Query: 276 HYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
Y++F S+ FE D A+ L+W++P +VV H ++ F + Q
Sbjct: 411 VLYNQFLSQADFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKRQK 463
>gi|390594544|gb|EIN03954.1| transcription factor Tfb2 [Punctularia strigosozonata HHB-11173
SS5]
Length = 467
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 11/309 (3%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTN 79
W T+ + +G++ RP S+ ++ + QR GL+ P++T +GFQFLL + +
Sbjct: 157 WETILHFMVSSGTAHNPPRP---SAGVLFLLQRSGLMGGGGN--PQITSAGFQFLLHEPH 211
Query: 80 AQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLG 139
AQLW ++ +Y+ ++ER ++ +++SF+ LS G Y+ LS+ QK+M++D D G
Sbjct: 212 AQLWELLLQYLRMAEERQMDLVEVLSFIFMLSTTELGREYSTENLSDTQKAMLEDLRDYG 271
Query: 140 LVKLQQGRKENWFIPTKLATNLSMSL----TDSSARKEGFIVVETNFRMYAYSTSKLHCE 195
L+ QQ F PT+LAT L+ S T S EGFIV+ETN+R+YAY+ + L
Sbjct: 272 LI-WQQKPTSKRFSPTRLATTLTSSSPPLPTSGSGVSEGFIVLETNYRLYAYTDNPLQTA 330
Query: 196 ILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPEN 255
+L LF+ + + PNL+VG IT+ES+ A ++GI+AEQIIS+L +AHP++ P +P
Sbjct: 331 VLALFTTLRSRFPNLVVGQITRESVKRALQSGISAEQIISYLSTHAHPQMRKNNPLIPVT 390
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
V DQIRLWE + NR++ Y EF S+ +E +YAR+ + +LWE+P K E
Sbjct: 391 VQDQIRLWELEKNRLKSQEGFLYTEFASQGDYEYVLNYARELNVVLWENPVKRCFFGSME 450
Query: 316 IHMHMREFL 324
H ++R F+
Sbjct: 451 GHANIRGFI 459
>gi|348542188|ref|XP_003458568.1| PREDICTED: general transcription factor IIH subunit 4 [Oreochromis
niloticus]
Length = 461
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 177/299 (59%), Gaps = 12/299 (4%)
Query: 40 PTNFSSSMMKVF-QRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGI 98
P+ S + ++ Q GL+ EAP +T +GFQFLL+DT +QLWY +Y+ +Q RG+
Sbjct: 160 PSAVSQDLAQLLVQAGLMKSEAGEAPYITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGM 219
Query: 99 NQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLA 158
+ +++SFL +LSF G Y++ +SE + ++ + GLV Q+ RK + PT+LA
Sbjct: 220 DLVEILSFLFQLSFSSLGRDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLA 278
Query: 159 TNLSMSLTDS----------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
L+ +T S GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ P
Sbjct: 279 ITLAAGVTSSSSVSNLSSSPGTGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFP 338
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLN 268
N++V +T+ES+ A NGITA+QII FL+ AHP + + P +P + DQIRLWE + +
Sbjct: 339 NVVVAQLTRESVQQAIANGITAQQIIHFLRTRAHPVMLTQTPVLPPTITDQIRLWELERD 398
Query: 269 RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
R++ T Y++F S+ FE D A+ L+W+D +VV + H ++ F + Q
Sbjct: 399 RLQFTEGVLYNQFLSQADFEVLRDRAQGLGCLVWQDVAHRVMVVTPQGHSEVKRFWKRQ 457
>gi|417401351|gb|JAA47565.1| Putative rna polymer [Desmodus rotundus]
Length = 463
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 178/282 (63%), Gaps = 4/282 (1%)
Query: 50 VFQRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLL 108
+ Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL
Sbjct: 180 LIQAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLF 239
Query: 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS 168
+LSF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 240 QLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGA 298
Query: 169 --SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFEN 226
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +
Sbjct: 299 GGTAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIAS 358
Query: 227 GITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 286
GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+
Sbjct: 359 GITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD 418
Query: 287 FEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
FE +AR+ L++E+ K +VV H ++ F + Q
Sbjct: 419 FELLLAHARELGVLVFENSAKRLMVVTPAGHGDVKRFWKRQK 460
>gi|155371845|ref|NP_001094527.1| general transcription factor IIH subunit 4 [Bos taurus]
gi|148878127|gb|AAI46241.1| GTF2H4 protein [Bos taurus]
gi|296474219|tpg|DAA16334.1| TPA: general transcription factor IIH, polypeptide 4, 52kDa [Bos
taurus]
Length = 463
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLMFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|338718559|ref|XP_003363845.1| PREDICTED: general transcription factor IIH subunit 4 [Equus
caballus]
Length = 463
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|281337500|gb|EFB13084.1| hypothetical protein PANDA_018954 [Ailuropoda melanoleuca]
Length = 463
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|178056954|ref|NP_001116592.1| general transcription factor IIH subunit 4 [Sus scrofa]
gi|41529162|dbj|BAD08424.1| general transcription factor IIH, polypeptide 4 [Sus scrofa]
gi|47496805|dbj|BAD08426.2| general transcription factor IIH, polypeptide 4 [Sus scrofa]
Length = 463
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ +LGLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLRELGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|426250586|ref|XP_004019016.1| PREDICTED: general transcription factor IIH subunit 4 [Ovis aries]
Length = 463
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|440896165|gb|ELR48176.1| General transcription factor IIH subunit 4 [Bos grunniens mutus]
Length = 463
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|410958682|ref|XP_003985944.1| PREDICTED: general transcription factor IIH subunit 4 [Felis catus]
Length = 463
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQSPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|359320969|ref|XP_003639474.1| PREDICTED: general transcription factor IIH subunit 4-like [Canis
lupus familiaris]
Length = 463
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFI+VETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIIVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|344307658|ref|XP_003422497.1| PREDICTED: general transcription factor IIH subunit 4 [Loxodonta
africana]
Length = 463
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFI+VETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIIVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|47059175|ref|NP_997666.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|46237651|emb|CAE84027.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|117558335|gb|AAI27470.1| General transcription factor II H, polypeptide 4 [Rattus
norvegicus]
Length = 463
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|4504201|ref|NP_001508.1| general transcription factor IIH subunit 4 [Homo sapiens]
gi|113865855|ref|NP_001038968.1| general transcription factor IIH subunit 4 [Pan troglodytes]
gi|114050799|ref|NP_001040607.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|297677636|ref|XP_002816695.1| PREDICTED: general transcription factor IIH subunit 4 isoform 2
[Pongo abelii]
gi|332245940|ref|XP_003272109.1| PREDICTED: general transcription factor IIH subunit 4 [Nomascus
leucogenys]
gi|426352309|ref|XP_004043656.1| PREDICTED: general transcription factor IIH subunit 4 [Gorilla
gorilla gorilla]
gi|17380328|sp|Q92759.1|TF2H4_HUMAN RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|38503276|sp|P60027.1|TF2H4_PANTR RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|1514597|emb|CAA68870.1| transcription factor TFIIH [Homo sapiens]
gi|13436278|gb|AAH04935.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|15277224|dbj|BAB63317.1| Transcription factor II H [Homo sapiens]
gi|16740884|gb|AAH16302.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|21655317|gb|AAM64222.1| general transcription factor IIH, polypeptide 4 (52kD subunit)
[Homo sapiens]
gi|27544403|dbj|BAC54936.1| transcription factor II H [Homo sapiens]
gi|30583481|gb|AAP35985.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|32127781|dbj|BAC78171.1| transcription factor II H [Pan troglodytes]
gi|55700798|dbj|BAD69753.1| general transcription factor IIH, polypeptide 4, 52kDa [Macaca
mulatta]
gi|60655839|gb|AAX32483.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|60655841|gb|AAX32484.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|86197966|dbj|BAE78622.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|90960934|dbj|BAE92819.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|90960936|dbj|BAE92820.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|114306784|dbj|BAF31271.1| TFIIH protein [Homo sapiens]
gi|119623752|gb|EAX03347.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|123992979|gb|ABM84091.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|123999907|gb|ABM87462.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|355561507|gb|EHH18139.1| General transcription factor IIH polypeptide 4, partial [Macaca
mulatta]
gi|355748409|gb|EHH52892.1| General transcription factor IIH polypeptide 4 [Macaca
fascicularis]
gi|380812138|gb|AFE77944.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|380812140|gb|AFE77945.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|383408563|gb|AFH27495.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|410214852|gb|JAA04645.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410250640|gb|JAA13287.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410290944|gb|JAA24072.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410352807|gb|JAA43007.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
Length = 462
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 240
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 241 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 299
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 300 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 359
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 360 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 419
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 420 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>gi|395831929|ref|XP_003789035.1| PREDICTED: general transcription factor IIH subunit 4 [Otolemur
garnettii]
Length = 463
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|62896773|dbj|BAD96327.1| general transcription factor IIH, polypeptide 4, 52kDa variant
[Homo sapiens]
Length = 462
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 175/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 240
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 241 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 299
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 300 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 359
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE +R+ T Y++F S+ FE
Sbjct: 360 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELGRDRLRFTEGVLYNQFLSQVDFE 419
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 420 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>gi|6754094|ref|NP_034494.1| general transcription factor IIH subunit 4 [Mus musculus]
gi|18202124|sp|O70422.1|TF2H4_MOUSE RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|2997755|gb|AAC08594.1| TFIIH transcription/DNA repair factor p52 subunit [Mus musculus]
gi|15215027|gb|AAH12638.1| Gtf2h4 protein [Mus musculus]
gi|26348003|dbj|BAC37650.1| unnamed protein product [Mus musculus]
gi|74194835|dbj|BAE26009.1| unnamed protein product [Mus musculus]
gi|74222199|dbj|BAE26910.1| unnamed protein product [Mus musculus]
Length = 463
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|442757633|gb|JAA70975.1| Putative rna polymer [Ixodes ricinus]
Length = 459
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 171/280 (61%), Gaps = 5/280 (1%)
Query: 50 VFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFL 107
+ GL+ ++E AP +T GFQFLLMDT +Q+W+ V +Y+ + RG+N + ++FL
Sbjct: 175 LLHAGLMKSEEEEGSAPLITMEGFQFLLMDTASQVWHFVLQYLDTLESRGLNLVECLTFL 234
Query: 108 LELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD 167
+LSF G+ Y+ +SE ++ + GLV Q+ R+ F PT+LA NL+ L +
Sbjct: 235 FQLSFLTLGKDYSTEGMSESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLKE 293
Query: 168 SSAR--KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFE 225
++ R + G+IVVETN+R+YAY+ S+L +L LF ++ Y+LPNL+VG +T+ES+ A
Sbjct: 294 TNLRSYESGYIVVETNYRVYAYTDSQLQVALLALFCELMYRLPNLVVGVLTRESVRQALR 353
Query: 226 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
+GIT+ QII FLQ +AHP + P +P + DQ+RLWE + +R Y +F S+
Sbjct: 354 SGITSNQIIKFLQMHAHPEAQKQSPVIPPTIMDQLRLWELERDRFNFREGVLYSQFISQS 413
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
F+ +YA D L+W++P K +VV H ++ F +
Sbjct: 414 DFQLLRNYASDLGVLIWDNPSKRVMVVNRNGHDEVKRFWK 453
>gi|74143475|dbj|BAE28812.1| unnamed protein product [Mus musculus]
Length = 463
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 175/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+D AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDMPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ +GI
Sbjct: 301 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQVIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ VFE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVVFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|440791255|gb|ELR12502.1| TFIIH basal transcription factor complex subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 304
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 180/285 (63%), Gaps = 6/285 (2%)
Query: 44 SSSMMKVFQRG--LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S ++ + RG ++ + ++ R+ + GF FLL D Q+W ++ Y+ + QE N
Sbjct: 10 SDRVVSLLTRGEFMVVHEEDQSIRIADKGFPFLLKDLRTQVWILLLLYLRSLQEEKANVH 69
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL 161
D++SFL LSF GE Y ++ L+ + +++D DLG++ ++ R W PT+LA L
Sbjct: 70 DVLSFLFRLSFLTVGEGYQMDDLAFSESGLLQDLQDLGII-YRKHRDSKWLYPTQLAIGL 128
Query: 162 SMSLTDSSAR-KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
S T+++ R +EG+I+V T++R+YAY++S + +L LF+++EYQLPN+++G + +E++
Sbjct: 129 SS--TEAAKRDQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLRENI 186
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
A + GI+A QI+ FL+ NAHP++ P +PE++ DQ+RLWE++ R+ ++P ++YD+
Sbjct: 187 RQAVQVGISANQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSPGYFYDD 246
Query: 281 FPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
F S F+ A YARD LL+ D K L V + H +R +++
Sbjct: 247 FASLAAFKKAEKYARDVGALLYSDAAKRFLFVTEQGHQLLRRYVK 291
>gi|410911638|ref|XP_003969297.1| PREDICTED: general transcription factor IIH subunit 4-like
[Takifugu rubripes]
Length = 465
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 170/288 (59%), Gaps = 14/288 (4%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GL+ E P +T +GFQFLL+DT +QLWY +Y+ +Q RG++ +++SFL +LSF
Sbjct: 176 GLMKSEAGEPPYITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFS 235
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS---- 169
G Y++ +S+ + ++ + GLV Q+ RK + PT+LA L+ + SS
Sbjct: 236 TLGRDYSVEGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLATGDSSSSLHTP 294
Query: 170 ---------ARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
+ GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+
Sbjct: 295 TASLASTPGSGDSGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVVVAQVTRESV 354
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
A NGITA+QII FL+ AHP + + P +P + DQIRLWE + +R++ T Y++
Sbjct: 355 QQAIANGITAQQIIHFLRTRAHPVMLRQTPFLPPTITDQIRLWELERDRLQFTEGVLYNQ 414
Query: 281 FPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
F S+ FE D A+ L+W+D +VV H +++F + Q
Sbjct: 415 FLSQTDFEVLRDRAKSLGCLVWQDAAHRVMVVTLWGHSEVKKFWKRQK 462
>gi|336370852|gb|EGN99192.1| hypothetical protein SERLA73DRAFT_90464 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383609|gb|EGO24758.1| hypothetical protein SERLADRAFT_361686 [Serpula lacrymans var.
lacrymans S7.9]
Length = 469
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS Q PT S ++ + QR GL+++ A ++T +GFQFLL + QLW ++ +Y+
Sbjct: 162 SSGQGSLPTKPSQGVLYLLQRSGLMTQNHGSALQITSAGFQFLLHTPHDQLWDLLLQYLH 221
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
++ER ++ +++SFL LS G Y+ LSE QK+M++D D GLV Q+
Sbjct: 222 MAEERQMDLVEVLSFLFMLSTMDLGREYSTEGLSETQKAMLEDLRDYGLV-WQRKATSKR 280
Query: 152 FIPTKLATNLSMSL--------TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
F PT+LAT L+ S T + +GFIV+ETN+R+YAY+ L +L LF +
Sbjct: 281 FSPTRLATTLTSSCPPLPTSTGTSGGPQSQGFIVLETNYRIYAYTDKPLQTAVLNLFITM 340
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLW 263
+Y+ PNL+VG +T+ES+ A NGI+AEQIIS+L +AHP++ P +P V DQIRLW
Sbjct: 341 KYRFPNLVVGMLTRESVKKALSNGISAEQIISYLTTHAHPQMRKNNPLLPVTVQDQIRLW 400
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
E + NR++ + Y +F S +E +YA+ +LWE+ + + H ++R F
Sbjct: 401 ELERNRLKSEEGYLYKDFGSHADYEYVLNYAKQLDVVLWENTSRRCFFGSLDGHTNIRGF 460
Query: 324 L 324
+
Sbjct: 461 I 461
>gi|344252968|gb|EGW09072.1| General transcription factor IIH subunit 4 [Cricetulus griseus]
Length = 463
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT+AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTSAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA 170
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 171 --RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 SVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|170039509|ref|XP_001847575.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
gi|167863052|gb|EDS26435.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
Length = 492
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 189/324 (58%), Gaps = 17/324 (5%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDT 78
WR + + GSS E S +++ L +RD+ +P +T GFQFLL+DT
Sbjct: 168 WRCVLHYMVGAGSSKGME-GEGISPDAVRILLHANLMKRDETDGSPVITRQGFQFLLLDT 226
Query: 79 NAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADL 138
AQ+W+ + +Y+ + RG++ A+ +S L +LSF G Y+ LS+ + ++ +
Sbjct: 227 QAQVWHFMLQYLDTCEARGLDLAECLSMLFQLSFSTLGRDYSSEGLSQGLLTFLQHLREF 286
Query: 139 GLVKLQQGRKENWFIPTKLATNLS-------MSLTDSSARKEGFIVVETNFRMYAYSTSK 191
GLV Q+ RKE F PT+LA N++ + S+A+ +G+IVVETN+R+YAY+ S
Sbjct: 287 GLV-YQRKRKEGRFYPTRLAHNITSRNAVPTIQEDGSAAQDKGYIVVETNYRVYAYTDSN 345
Query: 192 LHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP------RV 245
L +L LF+++ Y+ PNL+VG +T++S+ AF GITA+QIIS+L+Q+AHP +
Sbjct: 346 LQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITADQIISYLEQHAHPTMHNVEQT 405
Query: 246 ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
+ ++P V DQI+LWE++ NR T Y++F S+ F DYA+ ++W++
Sbjct: 406 INTKSALPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQGDFNTLRDYAQSIGVMIWQNE 465
Query: 306 KKMRLVVKAEIHMHMREFLRGQNK 329
+ +VV H +++F + +K
Sbjct: 466 RTRTMVVTKNGHDDVKKFWKRYSK 489
>gi|195126587|ref|XP_002007752.1| GI12214 [Drosophila mojavensis]
gi|193919361|gb|EDW18228.1| GI12214 [Drosophila mojavensis]
Length = 492
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 186/323 (57%), Gaps = 15/323 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
WR + + G+ + E ++ + L+ R ++E +T GFQFLL+DT A
Sbjct: 168 WRCVLHYMVGTGNRSNTETEAISPDAVRILLHANLMKRDEREGITITRQGFQFLLLDTRA 227
Query: 81 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 140
Q+W+ + +Y+ QERG+ A+ +S L +LSF G Y+ +++ ++ + GL
Sbjct: 228 QVWHFMLQYLDTCQERGLVLAECLSMLFQLSFSTLGRDYSSEGMNKQMLMFLQHLREFGL 287
Query: 141 VKLQQGRKENWFIPTKLATNL--------SMSLTDSSARKEGFIVVETNFRMYAYSTSKL 192
V Q+ RKE+ F PT+LA N+ S+S+ + ++ G+IVVETN+R+YAY+ S+L
Sbjct: 288 V-FQRKRKEHRFYPTRLALNVTNKEAAEASISVDEERMQERGYIVVETNYRVYAYTDSQL 346
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA------ 246
+L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP +
Sbjct: 347 QVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMKLVESAI 406
Query: 247 DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPK 306
+P V DQI+LWE + NR T Y++F S++ F DYA+ Q+ L+W++ +
Sbjct: 407 QSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSQNVLVWQNER 466
Query: 307 KMRLVVKAEIHMHMREFLRGQNK 329
+VV+ H ++ + + +K
Sbjct: 467 TRTMVVQKNGHDDVKRYWKKYSK 489
>gi|351713119|gb|EHB16038.1| General transcription factor IIH subunit 4 [Heterocephalus glaber]
Length = 463
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 174/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA 170
SF G Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGRDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 171 --RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 SVHQPGFIVVETNYRLYAYTESELQVALIALFSEMLYRFPNVVVAQVTRESVQQAIGSGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|145351329|ref|XP_001420034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580267|gb|ABO98327.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 495
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNL-NTL 124
+T GF FLL Q+W ++ +YI +SQ+ A ISFLL L+F G AY + L
Sbjct: 220 VTAEGFAFLLQTAQEQIWVLLTQYIRDSQKTSATSA--ISFLLRLTFQEPGRAYAMTGVL 277
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA-------RKEGFIV 177
S+ ++ ++ D LGL+ + +K+ +++PT LA+ LS T EG I+
Sbjct: 278 SDTEQDVVLDLTHLGLLYTFEVKKKFYYVPTLLASGLSGGFTGDDGDTKAAAAAAEGHII 337
Query: 178 VETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 237
VETN+R+YAY++S + EILRLF++ +Y+LPNL VG +T+ES+ NA G+ AEQI+ ++
Sbjct: 338 VETNYRVYAYTSSAVEMEILRLFTRADYRLPNLYVGMLTRESVQNALRAGVDAEQIVGYI 397
Query: 238 QQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA-CDYARD 296
+ +AH +V + PSVP VCDQIRLW D+ R+E Y +FP F A A
Sbjct: 398 RAHAHKQVRRKKPSVPSTVCDQIRLWARDMERMEAEECVLYCDFPQAGTFYGAVVSEAEK 457
Query: 297 QSGLLWEDPKKMRLVVKAEIHMHMREFL 324
+ LLW D RL V+A H M+ +
Sbjct: 458 RGALLWRDDASRRLTVRASAHDEMKAVV 485
>gi|392564310|gb|EIW57488.1| transcription factor Tfb2 [Trametes versicolor FP-101664 SS1]
Length = 477
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS E P+ S ++ + +R GL++R A ++T GFQFLL + QLW ++ +Y+
Sbjct: 169 SSGTGEFPSQPSKGVLYLLERSGLMARVHSGALQITSGGFQFLLHPPHVQLWELLLQYLQ 228
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
++ER ++ ++ISFLL LS G+ Y+ LS QK+M+ D D GL+K Q+
Sbjct: 229 MAEERQMDLVEVISFLLMLSTTELGKNYSTENLSPTQKTMLDDLRDYGLIK-QRTPTSRR 287
Query: 152 FIPTKLATNLSMSL--------TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
F PT+LAT L+ S + + +GFIV+ETN+R+YAY+ + L +L LF +
Sbjct: 288 FSPTRLATTLTSSSPPLPTSAGSGDGSHAQGFIVLETNYRLYAYTDNPLQIAVLNLFVTL 347
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLW 263
+ + PNL++GAIT++S+ A +GITA+QIIS+L +AHP++ P +P V DQIRLW
Sbjct: 348 KSRFPNLVIGAITRDSVKKALASGITADQIISYLVTHAHPQMRKNQPLLPVTVQDQIRLW 407
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
E + NR++ + Y F S+ +E +YA+ +LWE+ + E H ++R F
Sbjct: 408 ELEKNRMKSQEGYLYTAFASQADYEYVLNYAKQLDVVLWENASRRCFFGSVEGHANIRGF 467
Query: 324 L 324
+
Sbjct: 468 I 468
>gi|242021693|ref|XP_002431278.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
gi|212516535|gb|EEB18540.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
Length = 467
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 179/293 (61%), Gaps = 6/293 (2%)
Query: 42 NFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGIN 99
S+ +++ L +RD+E + +T GFQFLL+DT +Q+WY + +Y+ R ++
Sbjct: 173 GISADAVRILLHANLMKRDEEDGSCVITREGFQFLLLDTASQVWYFMLQYLDTVSARNLD 232
Query: 100 QADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLAT 159
+ ++FL +LSF G+ Y+ +SE ++ + GL+ Q+ R+ F PT+LA
Sbjct: 233 LVECLTFLFQLSFSTLGKDYSTIGMSEGLLVFLQHLREFGLI-YQRKRRGGRFYPTRLAL 291
Query: 160 NLSMSLTDS--SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITK 217
N++ S KEG+I++ETN+R+YAY+ S L +L LF ++ Y+ PNL VG IT+
Sbjct: 292 NIACGENKSLQQMNKEGYIIIETNYRVYAYTDSNLQVALLGLFCEMLYRFPNLSVGLITR 351
Query: 218 ESLYNAFENGITAEQIISFLQQNAHPR-VADRMPSVPENVCDQIRLWESDLNRVEMTPAH 276
+S+ AF++GITAEQI+ FL+ +AHPR +A P++P V DQI+LWE++LNR+ +
Sbjct: 352 DSVRQAFKSGITAEQIVGFLRLHAHPRMIAVGPPTLPPTVVDQIKLWENELNRLVYSDGV 411
Query: 277 YYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y +F S+ FEA D A + L+WE+ KK +VV H +++F + +K
Sbjct: 412 LYSQFLSQADFEALRDRANELGVLVWENDKKRTMVVTKSGHDDVKKFWKSYSK 464
>gi|157113167|ref|XP_001651923.1| TFIIH basal transcription factor complex p52 subunit [Aedes
aegypti]
gi|108877858|gb|EAT42083.1| AAEL006356-PA [Aedes aegypti]
Length = 487
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 186/324 (57%), Gaps = 17/324 (5%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDT 78
WR + + GSS E S +++ L +RD+ +P +T GFQFLL+DT
Sbjct: 163 WRCVLHYMVGAGSSKGME-GEGISPDAVRILLHANLMKRDETDGSPVITRQGFQFLLLDT 221
Query: 79 NAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADL 138
AQ+W+ + +Y+ + RG++ A+ +S L +LSF G Y+ LS+ + ++ +
Sbjct: 222 QAQVWHFMLQYLDTCEARGLDLAECLSMLFQLSFSTLGRDYSSEGLSQGLLTFLQHLREF 281
Query: 139 GLVKLQQGRKENWFIPTKLATNLS-------MSLTDSSARKEGFIVVETNFRMYAYSTSK 191
GLV Q+ RKE F PT+LA N++ + SS + +G+I+VETN+R+YAY+ S
Sbjct: 282 GLV-YQRKRKEGRFYPTRLAHNITSKNAVQTIQEDGSSVQDKGYIIVETNYRVYAYTDSN 340
Query: 192 LHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS 251
L +L LF+++ Y+ PNL+VG +T++S+ AF GITAEQIIS+L+Q+AHP + + +
Sbjct: 341 LQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITAEQIISYLEQHAHPTMLNMEQA 400
Query: 252 V------PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
+ P V DQI+LWE++ NR T Y++F S+ F DYA+ + W++
Sbjct: 401 INSKSPLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQGDFNTLRDYAQSIGVMTWQNE 460
Query: 306 KKMRLVVKAEIHMHMREFLRGQNK 329
+ +VV H ++ F + +K
Sbjct: 461 RTRTMVVTKNGHDDVKRFWKRYSK 484
>gi|402224480|gb|EJU04542.1| transcription factor Tfb2 [Dacryopinax sp. DJM-731 SS1]
Length = 466
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 189/317 (59%), Gaps = 14/317 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLL----SRRDKEAPRLTESGFQFLLM 76
W ++ + +GSS P + + + + + GL+ + R E+ R+T GFQFLL
Sbjct: 147 WESILHFMVSSGSSAGRVPPPSIAVIFL-LRRSGLMVPIGAERHPES-RITSKGFQFLLE 204
Query: 77 DTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFA 136
D++ QLW ++ +Y++ S+++G + ++I FL L G+ Y+ LSE Q M++DF
Sbjct: 205 DSHTQLWELLLQYLAMSEDQGRDLVEVIGFLFMLGSMQLGQEYSTENLSETQDVMLQDFL 264
Query: 137 DLGLVKLQQGRKENWFIPTKLATNL----SMSLTDS----SARKEGFIVVETNFRMYAYS 188
D GL+ + F PT+LAT L S++ T S +A EGFI++ETN+R+YAY+
Sbjct: 265 DYGLIYRRNPDDHTRFYPTRLATTLTSTSSLAFTSSKHEKAASSEGFIILETNYRVYAYT 324
Query: 189 TSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 248
+ L +L LF + + NL++G +T+ES+ A NGITA+QIIS+L +AHP +
Sbjct: 325 ENPLQIAVLNLFVALHSRFENLVIGRLTRESIKAALANGITADQIISYLTVHAHPMMHKN 384
Query: 249 MPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKM 308
P +P V DQIRLW+ + NR++ + Y++F S+ F+ +YA+ +LWE+ +K
Sbjct: 385 NPVLPVTVQDQIRLWQLEKNRLKSENGYLYEDFNSQGDFDLVLNYAKQLDVVLWENREKR 444
Query: 309 RLVVKAEIHMHMREFLR 325
++ V+ + H ++REF+R
Sbjct: 445 KMFVREDGHENVREFIR 461
>gi|440800489|gb|ELR21525.1| transcription factor tfb2 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 465
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 178/285 (62%), Gaps = 6/285 (2%)
Query: 44 SSSMMKVFQRG--LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S ++ + RG ++ + ++ R+ + GF FLL D Q+W ++ Y+ + QE N
Sbjct: 169 SDRVVSLLTRGEFMVVHEEDQSIRIADKGFPFLLKDLRTQVWTLLLLYLRSLQEEKANVH 228
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL 161
D++SFL LSF GE Y ++ L+ + +++D DLG++ ++ + W PT+LA L
Sbjct: 229 DVLSFLFRLSFLTVGEGYQMDDLAFSESGLLQDLQDLGII-YRKHKDSKWLYPTQLAIGL 287
Query: 162 SMSLTDSSAR-KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
S T+++ R +EG+I+V T++R+YAY++S + +L LF+++EYQLPN+++G + +E++
Sbjct: 288 SS--TEAAKRDQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLRENI 345
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
A + GI+A QI+ FL+ NAHP++ P +PE++ DQ+RLWE++ R+ ++ ++YD+
Sbjct: 346 RQAVQVGISANQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSSGYFYDD 405
Query: 281 FPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
F S F+ A YARD L++ D K L V H +R +++
Sbjct: 406 FASLAAFKKAEKYARDVGALIYSDATKRFLFVSEPGHQLLRRYVK 450
>gi|449540295|gb|EMD31288.1| hypothetical protein CERSUDRAFT_119839 [Ceriporiopsis subvermispora
B]
Length = 412
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS + PT S +++ + +R GL++ A ++T SGFQFLL + QLW ++ +Y+
Sbjct: 105 SSGNGQYPTKPSDAVLYLLKRSGLMTSVRGAALQITSSGFQFLLHPPHEQLWELLLQYLH 164
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
++ER ++ D++ FLL LS G Y+ + LS QK+M++D D GL+ Q+
Sbjct: 165 LTEERQMDLVDVLGFLLMLSTMELGREYSTDGLSPTQKAMLEDLRDYGLL-WQRSATSQR 223
Query: 152 FIPTKLATNLSMS--------LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
F PT+LAT L+ S + ++ +GFIV+ETN+R+YAY+ + L +L LF +
Sbjct: 224 FSPTRLATTLTASSNPLPTSSSASADSQSQGFIVLETNYRVYAYTDNPLQIAVLNLFVTM 283
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLW 263
+ + PNL++GA+T+ES+ A NGITA+QIIS+L +AHP++ P +P V DQIRLW
Sbjct: 284 KSRFPNLVIGAVTRESVKKALANGITADQIISYLTAHAHPQMRRYKPLLPVTVQDQIRLW 343
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
E + NRV+ + Y F S+ +E +YA+ ++WE P + E H ++R F
Sbjct: 344 ELEKNRVKSQEGYLYTAFASQADYEYVLNYAKQLDVVIWESPTRRCFFGSLEGHSNIRGF 403
Query: 324 L 324
+
Sbjct: 404 I 404
>gi|393221241|gb|EJD06726.1| transcription factor Tfb2 [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 178/312 (57%), Gaps = 12/312 (3%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
W T+ + +G+ RP S ++ + +R L + ++T GFQFLL +A
Sbjct: 148 WETILHYMVSSGTGQMPARP---SQGVLFLLERSGLMSGNGGNMKITSFGFQFLLHSPHA 204
Query: 81 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 140
QLW ++ +Y+ ++ER ++ +++ FL LS G Y+ L E QK+M++D D GL
Sbjct: 205 QLWELLLQYLHMAEERQMDLIEVLGFLFMLSTMELGRGYSTENLGETQKAMLEDLRDYGL 264
Query: 141 VKLQQGRKENWFIPTKLATNLSMSL--------TDSSARKEGFIVVETNFRMYAYSTSKL 192
+ Q+ F PT+LAT L+ SL ++A+ +GFI++ETN+R+YAY+ + L
Sbjct: 265 I-WQKKASSRRFYPTRLATTLTSSLPPLPTSGSGGANAQAQGFIILETNYRIYAYTDNPL 323
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV 252
+L LF ++Y+ PNL+VG++T++S+ A NGITA+QII +L +AHP++ P +
Sbjct: 324 QTAVLNLFVTLKYRFPNLVVGSLTRDSVRKALANGITADQIIKYLTTHAHPQMRKNDPLI 383
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVV 312
P V DQIRLWE + NR++ + Y F S+ +E YA+ +LWE+ K
Sbjct: 384 PVTVQDQIRLWELERNRLKSQEGYLYTAFASQADYEFVLKYAKQLGVVLWENAAKRCFFG 443
Query: 313 KAEIHMHMREFL 324
E H ++R F+
Sbjct: 444 SLEGHANIRGFI 455
>gi|395332344|gb|EJF64723.1| transcription factor Tfb2 [Dichomitus squalens LYAD-421 SS1]
Length = 506
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 179/321 (55%), Gaps = 30/321 (9%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS + P S ++ + QR GL++ ++T +GFQFLL + QLW ++ +Y+
Sbjct: 179 SSGTGQFPAKPSQGVLYLLQRSGLMATVHGATLQITSAGFQFLLHPPHEQLWELLLQYLQ 238
Query: 92 NSQERGINQADLISFLLELSFHVAG--------------------EAYNLNTLSEIQKSM 131
++ER ++ +++SFLL LS G ++Y+ LS QK+M
Sbjct: 239 MAEERQMDLVEVLSFLLMLSTTELGKVGVHTIQFIAQVTQAIPHAQSYSTENLSATQKAM 298
Query: 132 IKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL--------TDSSARKEGFIVVETNFR 183
++D D GL++ Q+ F PT+LAT L+ S T + +GFIV+ETN+R
Sbjct: 299 LEDLRDYGLIR-QRTATSRKFSPTRLATTLTSSSPPLPTSAGTGDGSHVQGFIVLETNYR 357
Query: 184 MYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 243
+YAY+ + L +L LF ++Y+ PNL+VG IT++S+ A NGITA+QIIS+L +AHP
Sbjct: 358 LYAYTDNPLQIAVLNLFVTLKYRFPNLVVGQITRDSVKKALANGITADQIISYLITHAHP 417
Query: 244 RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE 303
++ P +P V DQIRLWE + NRV+ + Y F S +E DYA+ +LWE
Sbjct: 418 QMRKNKPLLPVTVQDQIRLWELERNRVKSQEGYLYTAFASHADYEWVLDYAKKLGVVLWE 477
Query: 304 DPKKMRLVVKAEIHMHMREFL 324
+P K E HM++R ++
Sbjct: 478 NPSKRCFFGSVEGHMNIRGYI 498
>gi|195162678|ref|XP_002022181.1| GL25529 [Drosophila persimilis]
gi|198464237|ref|XP_001353141.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
gi|194104142|gb|EDW26185.1| GL25529 [Drosophila persimilis]
gi|198149631|gb|EAL30642.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
Length = 494
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 182/313 (58%), Gaps = 19/313 (6%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 184 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYL 239
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+ERG++ + +S L +LSF G Y+ ++ S ++ + GLV Q+ RKE
Sbjct: 240 DTCEERGVSLPECLSMLFQLSFSTLGRDYSSEGMNSQMLSFLQHLREFGLV-FQRKRKEG 298
Query: 151 WFIPTKLATNL-------SMSLTDSSARKE-GFIVVETNFRMYAYSTSKLHCEILRLFSK 202
F PT+LA N+ +M+++D A ++ G+IVVETN+R+YAY+ S L +L LF++
Sbjct: 299 RFYPTRLALNVTSKEAATTMTVSDEEAMQDSGYIVVETNYRVYAYTDSPLQVAVLGLFTE 358
Query: 203 VEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA------DRMPSVPENV 256
+ Y+ PNL+VG +T++S+ A GITAEQI+S+LQQ AHP + +P V
Sbjct: 359 LLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLQQYAHPNMKLVESAIQSKSCLPPTV 418
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEI 316
DQI+LWE + NR T Y++F S++ F DYA+ L+W++ + +VV+
Sbjct: 419 VDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSIHVLVWQNERTRTMVVQKHG 478
Query: 317 HMHMREFLRGQNK 329
H ++ + + +K
Sbjct: 479 HDDVKRYWKKYSK 491
>gi|195999048|ref|XP_002109392.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
gi|190587516|gb|EDV27558.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
Length = 452
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 170/277 (61%), Gaps = 11/277 (3%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GL+S+ +T +GFQFLL+D +Q+WYI+ +Y+ +++ G++ +++SFL +LS+
Sbjct: 176 GLVSKNG-----ITAAGFQFLLLDRPSQVWYILLQYLDSAESLGMDLVEILSFLFQLSYS 230
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD---SSA 170
G+ Y+ L++ Q + ++ ++GLV +Q+ RK+ F PT+LA NL+ +
Sbjct: 231 TFGQNYSTEGLTQTQLTCLQHMREIGLV-VQRKRKDMKFYPTQLAINLASGAKQEELDHS 289
Query: 171 RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITA 230
+ G+I+VETN+R+YAY+ S L ++ LF ++ Y+LP L VG IT+ES+ AF NGITA
Sbjct: 290 KSSGYIIVETNYRLYAYTESPLDIALVALFCEMMYRLPGLCVGLITRESVQQAFTNGITA 349
Query: 231 EQIISFLQQNAHPRVADRM--PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
+II+F++ +AHP ++ P VP + DQ+ LWE + R+ + Y++ S FE
Sbjct: 350 NKIINFIRTHAHPEAKKKVTTPIVPSTIIDQLYLWELERGRLSCSDGVLYNQILSSSDFE 409
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
A YA D LLW P K LVV + H H++ F +
Sbjct: 410 ALRKYADDMGVLLWASPAKRLLVVNRDGHNHVKHFWK 446
>gi|393246879|gb|EJD54387.1| transcription factor Tfb2 [Auricularia delicata TFB-10046 SS5]
Length = 480
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 184/316 (58%), Gaps = 15/316 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSR---RDKEAPRLTESGFQFLLMD 77
W T+ + +G+ P+ ++++ + GL+ R R + ++T GFQFLL
Sbjct: 156 WETILHFMVSSGTDQSPATPSGAVCNLLR--KSGLMIRLDPRSDSSMKITSRGFQFLLSS 213
Query: 78 TNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFAD 137
+AQLW ++ Y+ ++ERG+ +++SFL LS G+ Y+ + L++ Q +++ + D
Sbjct: 214 PHAQLWELLLHYLELAEERGLGLMEVVSFLFMLSTMELGQEYSTDNLTKDQATVLGELLD 273
Query: 138 LGLV--KLQQGRKENWFIPTKLATNLSMSLTD-------SSARKEGFIVVETNFRMYAYS 188
GL+ + G + +F PT+LAT L SL + +SA GFI++ETN+R+YAY+
Sbjct: 274 YGLIYQRALPGMSKRFF-PTRLATTLMSSLPELPRTAGVASATSGGFIILETNYRLYAYT 332
Query: 189 TSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 248
+ L +L LF + + PNL+VG +T++S+ A NGITAEQII++L +AHP++
Sbjct: 333 DNPLQIAVLNLFVSFKSRFPNLVVGMVTRDSVKKALANGITAEQIITYLSAHAHPQMRKN 392
Query: 249 MPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKM 308
P +P V DQ+RLWE + NRV+ Y +F S+ FE DYAR ++WE+ ++
Sbjct: 393 NPLLPVTVQDQVRLWELEKNRVKAEEGFLYMDFTSQADFELVLDYARKLGVVIWENGRQR 452
Query: 309 RLVVKAEIHMHMREFL 324
KA+ H ++R F+
Sbjct: 453 MFFGKADGHNNIRTFI 468
>gi|307177222|gb|EFN66420.1| General transcription factor IIH subunit 4 [Camponotus floridanus]
Length = 467
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 181/299 (60%), Gaps = 7/299 (2%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQ 94
+++ S+ +++ L +RD+ +P +T++GFQFLL+DT +Q+WY + +Y+ +
Sbjct: 167 SQQQEGISADAVRILLHAGLMKRDEADGSPIITQAGFQFLLLDTASQVWYFILQYLDTIE 226
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
RG++ + ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F P
Sbjct: 227 ARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYP 285
Query: 155 TKLATNLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
T+LA N++ A+ KEG+IVVETN+R+YAY+ S L +L LF ++ Y+ PN++
Sbjct: 286 TRLALNIATGENKPLAKDTDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNVV 345
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRV 270
V +T++S+ A ++GITA QI+ +LQQ+ H ++ +R P + P + DQI+LWE++ NR
Sbjct: 346 VSILTRDSIRQALKSGITASQIVGYLQQHVHSKMIERGPPILPPTIVDQIKLWENERNRF 405
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ Y +F S+ FE D+A L+W+ +K +VV H +++F + +K
Sbjct: 406 LFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKTGHDDVKKFWKRYSK 464
>gi|350413829|ref|XP_003490125.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
impatiens]
Length = 467
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 179/294 (60%), Gaps = 7/294 (2%)
Query: 42 NFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGIN 99
S+ +++ L +RD+ +P +T++GFQFLL++T +Q+WY + +Y+ + RG++
Sbjct: 172 GISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLLETASQVWYFILQYLDTIEARGLD 231
Query: 100 QADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLAT 159
+ ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F PT+LA
Sbjct: 232 LVECLTFLFQLNFSTLGKDYSTEGMSEGLSTFLQHLREFGLV-YQRKRKAGRFYPTRLAL 290
Query: 160 NLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAIT 216
N++ +R KEG+IVVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T
Sbjct: 291 NIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILT 350
Query: 217 KESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRVEMTPA 275
++S+ A ++GITA QI+ +LQQ+AH ++ + P V P + DQI+LWE++ NR +
Sbjct: 351 RDSVRQALKSGITAAQIVGYLQQHAHGKMIEAGPPVLPPTIVDQIKLWENERNRFIFSEG 410
Query: 276 HYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y +F S+ FE D+A L+W++ +K +VV H +++F + +K
Sbjct: 411 VLYSQFLSQTDFEVLRDHALSTGVLIWQNERKRTIVVTKAGHDDVKKFWKRYSK 464
>gi|307212060|gb|EFN87943.1| General transcription factor IIH subunit 4 [Harpegnathos saltator]
Length = 467
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 177/294 (60%), Gaps = 7/294 (2%)
Query: 42 NFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGIN 99
S+ +++ L +RD+ +P +T++GFQFLL+DT +Q+WY + +Y+ + RG++
Sbjct: 172 GISADAVRILLHAGLMKRDETDGSPIITQAGFQFLLLDTASQVWYFILQYLDTIEARGLD 231
Query: 100 QADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLAT 159
+ ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F PT+LA
Sbjct: 232 LIECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYPTRLAL 290
Query: 160 NLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAIT 216
N++ T R KEG+IVVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T
Sbjct: 291 NIATGETKPLTRDTDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMIYRFPNLVVSILT 350
Query: 217 KESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRVEMTPA 275
++S+ A ++GITA QI+ +LQQ+AH + + P + P + DQI LWE++ NR +
Sbjct: 351 RDSVRQALKSGITATQIVGYLQQHAHSKTIEAGPPILPPTIVDQIMLWENERNRFLFSEG 410
Query: 276 HYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y +F S+ FE D+A L+W++ +K +VV H +++F + +K
Sbjct: 411 VLYSQFLSQTDFEVLRDHALTTGVLIWQNERKRTIVVTKAGHDDIKKFWKRYSK 464
>gi|409077631|gb|EKM77996.1| hypothetical protein AGABI1DRAFT_114851 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198975|gb|EKV48900.1| hypothetical protein AGABI2DRAFT_191077 [Agaricus bisporus var.
bisporus H97]
Length = 467
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 181/318 (56%), Gaps = 14/318 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAP-RLTESGFQFLLMDTN 79
W T+ + +G+ Q +P S ++ + QR L P ++T SGFQFLL +
Sbjct: 151 WETILHYMVSSGTGQQPAKP---SQGVLFLLQRSSLMSSFHGGPLQITSSGFQFLLHSPH 207
Query: 80 AQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLG 139
AQLW ++ +Y+ +QER ++ +++ FL LS G Y LS Q +++D D G
Sbjct: 208 AQLWDLLLQYLHLAQERQMDLVEVLGFLFMLSTMELGREYLTENLSTTQGVLLEDLRDYG 267
Query: 140 LVKLQQGRKENWFIPTKLATNLSMS-------LTDSSARKEGFIVVETNFRMYAYSTSKL 192
L+ Q K F PT+L T L+ S ++ SS +GFIV+ETN+R+YAY+ + L
Sbjct: 268 LI-WQSKPKSRRFSPTRLGTTLTSSSPPLPTTISASSGPLDGFIVLETNYRIYAYTDNPL 326
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV 252
+L LF ++Y+ PNL+VG IT++S+ A NGITA+QIIS+L +AHP++ P +
Sbjct: 327 QTAVLNLFVSLKYRFPNLVVGMITRDSVRRALMNGITADQIISYLITHAHPQMRKNNPLL 386
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVV 312
P V DQIRLWE + NR++ + + Y F S+ ++ +YA+ +LWE+ K
Sbjct: 387 PVTVQDQIRLWELEKNRLKSSEGYLYTAFTSQADYDLVLNYAKQLDVVLWENAAKRCFFG 446
Query: 313 KAEIHMHMREFL--RGQN 328
E H+ ++EF+ R QN
Sbjct: 447 SLEGHLRIKEFIERRTQN 464
>gi|358057347|dbj|GAA96696.1| hypothetical protein E5Q_03367 [Mixia osmundae IAM 14324]
Length = 467
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 166/278 (59%), Gaps = 9/278 (3%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GLLS D++ R+T GFQFLL D N+QLW ++ Y+ S++ G + ++I+ + ++
Sbjct: 186 GLLSSGDRDTRRITSLGFQFLLEDVNSQLWSLLLHYLKLSEDAGTDLKEVIALVFQIGNQ 245
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS----LTDSS 169
G Y+ TL+ +Q ++K F LGLV + K + PT+LA L+ L +
Sbjct: 246 ELGRVYSSETLNPLQLHILKTFGGLGLVYVY---KSGDYSPTRLAVTLTSGAPPLLKAGT 302
Query: 170 ARKE-GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
A +E GF+++ETN+R+YAY+ + L +L LF ++ + P L+VG IT+ES+ NGI
Sbjct: 303 AEEEQGFLILETNYRVYAYTQNPLQIAVLNLFVALKSRFPGLVVGMITRESIKAGLANGI 362
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
++QII+FL +AHP++ + P +P V DQI+LWE + NRV+ P YD+F S+ ++
Sbjct: 363 KSDQIIAFLTAHAHPQMRKQEPLLPPTVVDQIKLWEREKNRVKTEPCFLYDDFRSQADYD 422
Query: 289 AACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMREFLR 325
CDYA+ +LW +P R + H+ +R F++
Sbjct: 423 LVCDYAKQIGAVLWLGEPGSRRFATTEDGHVQVRGFIQ 460
>gi|340710070|ref|XP_003393621.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
terrestris]
Length = 467
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 181/299 (60%), Gaps = 7/299 (2%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQ 94
+++ S+ +++ L +RD+ +P +T++GFQFLL++T +Q+WY + +Y+ +
Sbjct: 167 SQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLLETASQVWYFILQYLDTIE 226
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
RG++ + ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F P
Sbjct: 227 ARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLSTFLQHLREFGLV-YQRKRKAGRFYP 285
Query: 155 TKLATNLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
T+LA N++ +R KEG+IVVETN+R+YAY+ S L +L LF ++ Y+ PNL+
Sbjct: 286 TRLALNIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLV 345
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRV 270
V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P V P + DQI+LWE++ NR
Sbjct: 346 VSILTRDSVRQALKSGITAAQIVGYLQQHAHGKMIEAGPPVLPPTIVDQIKLWENERNRF 405
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y +F S+ FE D+A L+W++ +K +VV H +++F + +K
Sbjct: 406 IFNEGVLYSQFLSQTDFEVLRDHALSTGVLIWQNERKRTIVVTKAGHDDVKKFWKRYSK 464
>gi|339521903|gb|AEJ84116.1| general transcription factor IIH subunit 4 [Capra hircus]
Length = 463
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 172/280 (61%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT A LWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAHLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ +L + LFS++ Y+ PN++V +T+ S+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTEPELQIARIALFSEMLYRFPNMVVPQVTRGSVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QI+ FL+ A P + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIVHFLRTRADPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|31201525|ref|XP_309710.1| AGAP010984-PA [Anopheles gambiae str. PEST]
gi|21293295|gb|EAA05440.1| AGAP010984-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 185/328 (56%), Gaps = 21/328 (6%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDT 78
WR + + GSS E S +++ L +RD+ +P +T GFQFLL+DT
Sbjct: 173 WRCVLHYMVGAGSSKGME-GEGISPDAVRILLHANLMKRDESDGSPVITRQGFQFLLLDT 231
Query: 79 NAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADL 138
AQ+W+ + +Y+ + RG+N + +S L +LSF G Y+ LS + ++ +
Sbjct: 232 QAQVWHFMLQYLDTCEARGLNLPECLSMLFQLSFSTLGRDYSSEGLSPGLLTFLQHLREF 291
Query: 139 GLVKLQQGRKENWFIPTKLA-----------TNLSMSLTDSSARKEGFIVVETNFRMYAY 187
GLV Q+ RKE F PT+LA T L+ ++ + +G+I+VETN+R+YAY
Sbjct: 292 GLV-YQRKRKEGRFYPTRLAHNITSKNATHATTLAQDQESNATKDKGYIIVETNYRVYAY 350
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---- 243
+ S L +L LF+++ Y+ PNL+VG ++++S+ AF GITAEQIIS+L+Q+AHP
Sbjct: 351 TDSNLQVALLGLFTELLYRFPNLVVGVLSRDSVRQAFRGGITAEQIISYLEQHAHPTMLT 410
Query: 244 --RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
+ + S+P V DQI+LWE++ NR T Y++F S+ F DYA+ ++
Sbjct: 411 VEQAINSKSSLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQADFITLRDYAQSIGVMI 470
Query: 302 WEDPKKMRLVVKAEIHMHMREFLRGQNK 329
W++ + +VV H +++F + +K
Sbjct: 471 WQNERIRTMVVTKNGHDDVKKFWKRYSK 498
>gi|427785675|gb|JAA58289.1| Putative rna polymer [Rhipicephalus pulchellus]
Length = 457
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 168/280 (60%), Gaps = 5/280 (1%)
Query: 50 VFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFL 107
+ GL+ + E +P +T GFQFLLMDT +Q+W+ V +Y+ + RG+N + ++FL
Sbjct: 173 LLHAGLMKSDEGEGSSPLITMEGFQFLLMDTASQVWHFVLQYLDTLESRGLNLVECLTFL 232
Query: 108 LELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD 167
+LSF G+ Y+ +SE ++ + GLV Q+ R+ F PT+LA NL+ L +
Sbjct: 233 FQLSFLTLGKDYSTEGMSESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLKE 291
Query: 168 SSAR--KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFE 225
++ R + G+I+VETN+R+YAY+ S+L +L LF ++ Y+ PNL+V +T+ES+ A
Sbjct: 292 TTLRSFEAGYIMVETNYRVYAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALR 351
Query: 226 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
+GIT+ QII FL+ AHP + P +P + DQ+RLWE + +R Y +F S+
Sbjct: 352 SGITSNQIIKFLRMYAHPEALKQTPVIPATIMDQLRLWEMERDRFVFREGVLYSQFISQS 411
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
F+ +YA + L+W++P K +VV H +++F +
Sbjct: 412 DFQLLRNYASELGVLIWDNPSKRVMVVNRNGHDEVKKFWK 451
>gi|383852611|ref|XP_003701820.1| PREDICTED: general transcription factor IIH subunit 4-like
[Megachile rotundata]
Length = 467
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 181/299 (60%), Gaps = 7/299 (2%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQ 94
+++ S+ +++ L +RD+ +P +T++GFQFLL++T +Q+WY + +Y+ +
Sbjct: 167 SQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLLETASQVWYFILQYLDTIE 226
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
RG++ + ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F P
Sbjct: 227 ARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYP 285
Query: 155 TKLATNLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
T+LA N++ +R KEG+IVVETN+R+YAY+ S L +L LF ++ Y+ PNL+
Sbjct: 286 TRLALNIATGQNKPLSRDPDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLV 345
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRV 270
V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P V P + DQI+LWE++ NR
Sbjct: 346 VSILTRDSVRQALKSGITASQIVGYLQQHAHSKMIEAGPPVLPPTIVDQIKLWENERNRF 405
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ Y +F S+ FE D+A L+W+ +K +VV H +++F + +K
Sbjct: 406 IFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSK 464
>gi|321470926|gb|EFX81900.1| hypothetical protein DAPPUDRAFT_210868 [Daphnia pulex]
Length = 463
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 180/296 (60%), Gaps = 10/296 (3%)
Query: 43 FSSSMMKVFQRGLLSRRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQ 100
SS +++ Q L +++ +L T+ GFQFLLMDT+AQ+WY + +Y+ + R ++
Sbjct: 165 ISSDALQILQHAGLMKKEPGENQLSITKDGFQFLLMDTSAQVWYFLLQYLDTANSRNLDL 224
Query: 101 ADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATN 160
D + FL +LSF G+ Y+ +++++ + ++ + GLV Q+ RK+ F PT+LA +
Sbjct: 225 IDCLGFLFQLSFSTLGQDYSTDSMNDGLQKFLQHLREFGLV-YQRKRKDGRFYPTRLALD 283
Query: 161 LS-------MSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
++ ++ ++S++ G+IVVETN+R+YAY+ S L ++ LF ++ Y+ PNL+VG
Sbjct: 284 IAAGPKKSMLNSLNASSQTTGYIVVETNYRVYAYTDSSLQVALIALFCELIYRFPNLVVG 343
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMT 273
IT+ES+ A + GITA+QI+SFL+Q+AH P +P + DQI+LW + +R
Sbjct: 344 IITRESVREALKRGITADQIVSFLRQHAHSECYKEPPVLPSTIADQIKLWAIERDRFLYK 403
Query: 274 PAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y++F S+ FE +YA+++ L+W ++VV E H +R+F + ++
Sbjct: 404 DGVLYNQFDSQADFEILRNYAQERGLLVWHTLNGRKMVVTKEGHDEVRKFWKRHSR 459
>gi|340371925|ref|XP_003384495.1| PREDICTED: general transcription factor IIH subunit 4-like
[Amphimedon queenslandica]
Length = 446
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 168/286 (58%), Gaps = 4/286 (1%)
Query: 45 SSMMKVFQ-RGLLSRRDKEAPR-LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQAD 102
S +++V Q GL+S+ P +T GFQFLLMDT +Q+W + +Y++ +Q+RG++ D
Sbjct: 159 SEIVQVLQYAGLMSQASSRHPSFITTLGFQFLLMDTQSQIWQFILQYLNTAQDRGMDLID 218
Query: 103 LISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS 162
+ F+ +LSF G+ Y+ L+E Q + + GLV ++ + ++ PTKL L+
Sbjct: 219 CLKFIFQLSFSTLGKDYSTKGLTESQLTFMYHLCQFGLVYQRKSSSKRYY-PTKLVIQLT 277
Query: 163 MSLT-DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLY 221
T + + GFI+VETN+R+ AY+ SKLH L LF +++Y+ PN+ VG IT+ES+
Sbjct: 278 AGETIGMNTSQAGFIIVETNYRVIAYTDSKLHIATLALFCQMQYRFPNVAVGTITRESIQ 337
Query: 222 NAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 281
A +GI A+QIISFL Q+AH + + +P V DQI+LWE + NR+ Y EF
Sbjct: 338 QALVHGIKADQIISFLTQHAHHNMLSKAHILPPTVTDQIKLWEIERNRLSFQEGILYSEF 397
Query: 282 PSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
S +E YA D LLW + ++ +V+ + H +R F + Q
Sbjct: 398 LSVTDYEKVKKYAEDLGVLLWSNRQRRLMVIHPDRHDEIRHFWKRQ 443
>gi|334323685|ref|XP_003340422.1| PREDICTED: valyl-tRNA synthetase, mitochondrial-like [Monodelphis
domestica]
Length = 1641
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 178/311 (57%), Gaps = 35/311 (11%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSSEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS +T +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYST-------------------------------SKLHCEIL 197
+A + GFIVVETN+R+YAY+ S+L ++
Sbjct: 301 TAHQPGFIVVETNYRLYAYTGEVGGMRMGIGMLEGRNCGFFGIILFFSLATESELQIALI 360
Query: 198 RLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVC 257
LFS++ Y+ PN++V IT+ES+ A NGITA+QII FL+ AHP + ++P +P +
Sbjct: 361 ALFSEMLYRFPNMVVAQITRESVQQAIANGITAQQIIHFLKTRAHPVMLKQIPVLPPTIT 420
Query: 258 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIH 317
DQIRLWE + +R+ + Y++F S+ FE +AR+ L++E+ K +VV H
Sbjct: 421 DQIRLWELERDRLRFSEGVLYNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTPAGH 480
Query: 318 MHMREFLRGQN 328
++ F + Q
Sbjct: 481 SDVKRFWKRQK 491
>gi|48102983|ref|XP_395476.1| PREDICTED: general transcription factor IIH subunit 4 [Apis
mellifera]
Length = 467
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 181/299 (60%), Gaps = 7/299 (2%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQ 94
+++ S+ +++ L +RD+ +P +T++GFQFLL++T +Q+WY + +Y+ +
Sbjct: 167 SQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLLETASQVWYFILQYLDTIE 226
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
RG++ + ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F P
Sbjct: 227 ARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYP 285
Query: 155 TKLATNLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
T+LA N++ +R KEG+IVVETN+R+YAY+ S L +L LF ++ Y+ PNL+
Sbjct: 286 TRLALNIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLV 345
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRV 270
V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P + P + DQI+LWE++ NR
Sbjct: 346 VSILTRDSVRQALKSGITATQIVGYLQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRF 405
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ Y +F S+ FE D+A L+W+ +K +VV H +++F + +K
Sbjct: 406 IFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSK 464
>gi|380014187|ref|XP_003691121.1| PREDICTED: general transcription factor IIH subunit 4-like [Apis
florea]
Length = 467
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 181/299 (60%), Gaps = 7/299 (2%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQ 94
+++ S+ +++ L +RD+ +P +T++GFQFLL++T +Q+WY + +Y+ +
Sbjct: 167 SQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLLETASQVWYFILQYLDTIE 226
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
RG++ + ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F P
Sbjct: 227 ARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYP 285
Query: 155 TKLATNLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
T+LA N++ +R KEG+IVVETN+R+YAY+ S L +L LF ++ Y+ PNL+
Sbjct: 286 TRLALNIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLV 345
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRV 270
V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P + P + DQI+LWE++ NR
Sbjct: 346 VSILTRDSVRQALKSGITATQIVGYLQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRF 405
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ Y +F S+ FE D+A L+W+ +K +VV H +++F + +K
Sbjct: 406 IFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSK 464
>gi|443688956|gb|ELT91478.1| hypothetical protein CAPTEDRAFT_18660 [Capitella teleta]
Length = 463
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 159/255 (62%), Gaps = 5/255 (1%)
Query: 64 PRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNT 123
P +T +GFQFLL+DT+ Q+W+ + EY++ + R ++ + +SFL +LSF G+ Y+ +
Sbjct: 195 PCITPAGFQFLLLDTSTQVWFFMIEYLNTVESRKMDLVECLSFLFQLSFSTLGKDYSTES 254
Query: 124 LSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL---SMSLTDSSARKEGFIVVET 180
++ Q+ ++ + GLV Q+ R F PT+LA NL S +A ++GFIVVET
Sbjct: 255 MTSNQQRFLQHLREFGLV-YQRKRSSQRFYPTRLAVNLATGSKGGDSETASEDGFIVVET 313
Query: 181 NFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 240
N+R+YAY+ S L ++ LF + Y+ PN+ VG ++++S+ A GITAEQII+FL+ +
Sbjct: 314 NYRVYAYTNSSLKVALISLFCSMMYRFPNMAVGVVSRDSVREALSRGITAEQIINFLRNH 373
Query: 241 AHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
AHP R P +P V DQIRLWE + +R Y++F S+ FE DYA+D L
Sbjct: 374 AHPHTQKRKPILPPTVSDQIRLWELERDRFHFNEGVLYNQFLSQTDFEVLRDYAKDLGVL 433
Query: 301 LWED-PKKMRLVVKA 314
+E+ P+++ +V +A
Sbjct: 434 SYENIPRRLMVVTRA 448
>gi|342319113|gb|EGU11064.1| RNA polymerase II transcription factor B subunit 2 [Rhodotorula
glutinis ATCC 204091]
Length = 496
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 179/316 (56%), Gaps = 20/316 (6%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLL--SRRDKEAPRLTESGFQFLLMDT 78
W T++ + GS A++P S+++ + GL+ R R+T GFQFLL D
Sbjct: 171 WETIQHFMV--GSDAGAKKPGEKVLSLLE--RSGLMYSPTRSLRNMRITSKGFQFLLEDV 226
Query: 79 NAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADL 138
N QLW ++ Y+ SQ + + I FL L G AY + LS+IQ +++D AD
Sbjct: 227 NTQLWDLLLVYLEGSQ----DLVETIGFLFMLGSLELGRAYMTDNLSQIQHGVLRDLADY 282
Query: 139 GLVKLQQGRKENWFIPTKLATNLSMSL-----TDSSARKEGFIVVETNFRMYAYSTSKLH 193
GLV L + R F PT+LAT L+ S + S ++GFIV+ETN+++YAY+++ L
Sbjct: 283 GLVYLPE-RNAPIFYPTRLATTLTSSAPPLVSSRHSNEEKGFIVLETNYKLYAYTSNPLQ 341
Query: 194 CEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS-- 251
+L LF+ ++ + N + G IT+ES+ NGITA QIIS+L AHP++ + S
Sbjct: 342 IAVLGLFAHLKTRFANFVTGHITRESIRRGLANGITANQIISYLASRAHPQMRAQAGSDD 401
Query: 252 --VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQIRLWE + R++ T + YDEF S +E +YAR+ +L E PK +
Sbjct: 402 KLLPITVVDQIRLWEHERRRIQTTEGYLYDEFSSTHDYELVVNYAREIGSVLLELPKARK 461
Query: 310 LVVKAEIHMHMREFLR 325
+ V A+ H +REF++
Sbjct: 462 VFVTADGHQQVREFIK 477
>gi|195019521|ref|XP_001984999.1| GH16811 [Drosophila grimshawi]
gi|193898481|gb|EDV97347.1| GH16811 [Drosophila grimshawi]
Length = 493
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 178/324 (54%), Gaps = 16/324 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRD-KEAPRLTESGFQFLLMDTN 79
WR + + GS S +++ L +RD ++ +T GFQFLL+DT
Sbjct: 168 WRCVLHYMVGTGSRNGGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTR 227
Query: 80 AQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLG 139
AQ+W+ + +Y+ +ERG + + +S L +LSF G Y+ +S ++ + G
Sbjct: 228 AQVWHFMLQYLETCEERGFSLPECLSMLFQLSFSTLGRDYSSEGMSHQMLMFLQHLREFG 287
Query: 140 LVKLQQGRKENWFIPTKLATNL--------SMSLTDSSARKEGFIVVETNFRMYAYSTSK 191
LV Q+ RKE F PT+LA N+ S S D ++ G+IVVETN+R+YAY+ S+
Sbjct: 288 LV-FQRKRKEGRFYPTRLALNVTNKDAAQASTSADDERMQERGYIVVETNYRVYAYTDSQ 346
Query: 192 LHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA----- 246
L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP +
Sbjct: 347 LQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMKLVESA 406
Query: 247 -DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
+P V DQI+LWE + NR T Y++F S+ F DYA+ + L+W++
Sbjct: 407 IQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSQTDFVTLRDYAQSINMLVWQNE 466
Query: 306 KKMRLVVKAEIHMHMREFLRGQNK 329
+ +VV+ H ++ + + +K
Sbjct: 467 RTRTMVVQKNGHDDVKRYWKKYSK 490
>gi|403180193|ref|XP_003338499.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166015|gb|EFP94080.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 679
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 173/295 (58%), Gaps = 12/295 (4%)
Query: 40 PTNFSSSMMKVF-QRGLLSRRDK---EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQE 95
PT S +++ + Q GL++ D ++ ++T GF FLL D N QLW I+ +Y+ ++
Sbjct: 7 PTKPSHNILSLLGQSGLMTSSDPRSLQSLKITSKGFGFLLEDVNTQLWDILLQYLKMTEA 66
Query: 96 RGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPT 155
G++ D+++ L L G+ Y+ + + Q +++D D GLV + + F PT
Sbjct: 67 NGLDVVDVLACLFMLGSLELGQEYSFSNWTPTQTQVLQDLVDYGLVLVSAPDR---FYPT 123
Query: 156 KLATNLSMSL-----TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNL 210
+LAT L+ + + + + GF+V+ETN+R+YAY+++ L +L LF + Y+ PNL
Sbjct: 124 RLATTLTSTAPPLVSAERAQEEHGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPNL 183
Query: 211 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRV 270
+VGA+T+ES+ +A NGITA+Q+I +L +AHP++ P +P V DQIRLWE + NR+
Sbjct: 184 VVGAVTRESIKSALSNGITADQVIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNRI 243
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+ Y++F S +++ Y+R +LWE +L V + H+ +REF R
Sbjct: 244 RAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLTLREFFR 298
>gi|195441209|ref|XP_002068409.1| GK20438 [Drosophila willistoni]
gi|194164494|gb|EDW79395.1| GK20438 [Drosophila willistoni]
Length = 512
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 179/320 (55%), Gaps = 26/320 (8%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 195 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMMQYL 250
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+ERGI+ + +S L +LSF G Y+ +S + ++ + GLV Q+ RKE
Sbjct: 251 DTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMSHQMLAFLQHLREFGLV-FQRKRKEG 309
Query: 151 WFIPTKLATN-------------LSMSLTDSSARKE--GFIVVETNFRMYAYSTSKLHCE 195
F PT+LA N ++MS ++ R + G+IVVETN+R+YAY+ S L
Sbjct: 310 RFYPTRLALNVTSKESADATTAIVTMSASEEEERMQDRGYIVVETNYRVYAYTDSPLQVA 369
Query: 196 ILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA------DRM 249
+L LF+++ Y+ PNL+VG +T++S+ A GITAEQIIS+L+Q AHP + +
Sbjct: 370 VLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIISYLEQYAHPNMKLVESAINSK 429
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQI+LWE + NR T Y++F S F DYA+ L+W++ K
Sbjct: 430 SCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSTTDFVTLRDYAQSIQVLVWQNEKTRT 489
Query: 310 LVVKAEIHMHMREFLRGQNK 329
+VV+ H ++ + + +K
Sbjct: 490 MVVQKNGHDDVKRYWKKYSK 509
>gi|395533817|ref|XP_003768949.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Sarcophilus harrisii]
Length = 1638
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 177/314 (56%), Gaps = 38/314 (12%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 215 QAGLMKSSEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 274
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS +T +
Sbjct: 275 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGG 333
Query: 169 SARKEGFIVVETNFRMYAYST----------------------------------SKLHC 194
+A + GFIVVETN+R+YAY+ S+L
Sbjct: 334 TAHQPGFIVVETNYRLYAYTGEVGGIKMRIEIRGGGIGGELNLLWSSIVFSLETESELQI 393
Query: 195 EILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPE 254
++ LFS++ Y+ PN++V +T+ES+ A NGITA+QII F++ AHP + + P +P
Sbjct: 394 ALIALFSEMLYRFPNMVVAQVTRESVQQAIANGITAQQIIHFMKTRAHPVMLKQTPVLPP 453
Query: 255 NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKA 314
+ DQIRLWE + +R+ + Y++F S+ FE +AR+ L++E+ K +VV
Sbjct: 454 TITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTP 513
Query: 315 EIHMHMREFLRGQN 328
H ++ F + Q
Sbjct: 514 AGHSDVKRFWKRQK 527
>gi|346464903|gb|AEO32296.1| hypothetical protein [Amblyomma maculatum]
Length = 436
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 178/321 (55%), Gaps = 26/321 (8%)
Query: 12 LVLLQGFQPWRTLRPMP----------LDNGSSTQAERPTNF-----------SSSMMKV 50
+ LL G +PW P+ LD + + E +F + ++ +
Sbjct: 115 IALLGGGKPWAVYNPLEKDKHGRDATFLDQYAVERWECVLHFMVGCHTTEGISADAVRIL 174
Query: 51 FQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLL 108
GL+ + E +P +T GFQFLLMDT +Q+W+ V +Y+ + RG+N + ++FL
Sbjct: 175 LHAGLMKSEEGEGSSPLITMEGFQFLLMDTPSQVWHFVLQYLDTIESRGLNLVECLTFLF 234
Query: 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS 168
+LSF G+ Y+ +SE ++ + GLV Q+ R+ F PT+LA NL+ L ++
Sbjct: 235 QLSFLTLGKDYSTEGMSESLLVFLQHLREFGLVY-QRKRRSGRFYPTRLAINLASGLRET 293
Query: 169 SAR--KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFEN 226
+ R + G+I+VETN+R+YAY+ S+L +L LF ++ Y+ PNL+V +T+ES+ A +
Sbjct: 294 NLRSYEAGYIMVETNYRVYAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRS 353
Query: 227 GITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 286
GIT+ QII FL+ AHP + P +P + DQ+RLWE + +R Y +F S+
Sbjct: 354 GITSNQIIKFLRMYAHPEALKQTPVIPATIMDQLRLWELERDRFVYREGVLYSQFISQSD 413
Query: 287 FEAACDYARDQSGLLWEDPKK 307
F+ +YA D L+W++P K
Sbjct: 414 FQLLRNYASDLGVLIWDNPSK 434
>gi|403163300|ref|XP_003323393.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163998|gb|EFP78974.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 887
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 173/295 (58%), Gaps = 12/295 (4%)
Query: 40 PTNFSSSMMKVF-QRGLLSRRDK---EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQE 95
PT S +++ + Q GL++ D ++ ++T GF FLL D N QLW I+ +Y+ ++
Sbjct: 212 PTKPSHNILSLLGQSGLMTSSDPRSLQSLKITSKGFGFLLEDVNTQLWDILLQYLKMTEV 271
Query: 96 RGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPT 155
G++ D+++ L L G+ Y+ + + Q +++D D GLV + + F PT
Sbjct: 272 NGLDVVDVLACLFMLGSLELGQEYSFSNWTPTQTQVLQDLVDYGLVLVSAPDR---FYPT 328
Query: 156 KLATNLSMSL-----TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNL 210
+LAT L+ + + + + GF+V+ETN+R+YAY+++ L +L LF + Y+ PNL
Sbjct: 329 RLATTLTSTAPPLVSAERAQEEHGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPNL 388
Query: 211 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRV 270
+VGA+T+ES+ +A NGITA+Q+I +L +AHP++ P +P V DQIRLWE + NR+
Sbjct: 389 VVGAVTRESIKSALSNGITADQVIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNRI 448
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+ Y++F S +++ Y+R +LWE +L V + H+ +REF R
Sbjct: 449 RAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLTLREFFR 503
>gi|195378984|ref|XP_002048261.1| GJ11446 [Drosophila virilis]
gi|194155419|gb|EDW70603.1| GJ11446 [Drosophila virilis]
Length = 492
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 180/323 (55%), Gaps = 15/323 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
WR + + GS + ++ + L+ R +++ +T GFQFLL+DT A
Sbjct: 168 WRCVLHYMVGTGSRGGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTRA 227
Query: 81 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 140
Q+W+ + +Y+ +ERGI + +S L +LSF G Y+ ++ + ++ + GL
Sbjct: 228 QVWHFMLQYLETCEERGICLPECLSMLFQLSFSTLGRDYSSEGMNNQMLTFLQHLREFGL 287
Query: 141 VKLQQGRKENWFIPTKLATNL--------SMSLTDSSARKEGFIVVETNFRMYAYSTSKL 192
V Q+ RKE F PT+LA N+ S S + ++ G+IVVETN+R+YAY+ S+L
Sbjct: 288 V-FQRKRKEGRFYPTRLALNVTNKDAAQASTSADEERMQERGYIVVETNYRVYAYTDSQL 346
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA------ 246
+L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP +
Sbjct: 347 QVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMKLVESAI 406
Query: 247 DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPK 306
+P + DQI+LWE + NR T Y++F S++ F DYA+ + L+W++ +
Sbjct: 407 QSKSCLPPTIVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSINMLVWQNER 466
Query: 307 KMRLVVKAEIHMHMREFLRGQNK 329
+VV+ H ++ + + +K
Sbjct: 467 TRTMVVQKNGHDDVKRYWKKYSK 489
>gi|16198089|gb|AAL13841.1| LD30622p [Drosophila melanogaster]
Length = 350
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 180/316 (56%), Gaps = 24/316 (7%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 39 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYL 94
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+ERGI+ + +S L +LSF G Y+ ++ + ++ + GLV Q+ RKE
Sbjct: 95 DTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEG 153
Query: 151 WFIPTKLATNL---------SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
F PT+LA N+ S+++ + + + G+IVVETN+R+YAY+ S L +L LF+
Sbjct: 154 RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFT 213
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM--------PSVP 253
++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP + RM +P
Sbjct: 214 ELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNM--RMVESAIHSKSCLP 271
Query: 254 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVK 313
V DQI+LWE + NR T Y++F S F DYA+ L+W++ + +VV+
Sbjct: 272 PTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQ 331
Query: 314 AEIHMHMREFLRGQNK 329
H ++ + + +K
Sbjct: 332 KNGHDDVKRYWKKYSK 347
>gi|345492819|ref|XP_001602702.2| PREDICTED: general transcription factor IIH subunit 4-like [Nasonia
vitripennis]
Length = 428
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 193/344 (56%), Gaps = 27/344 (7%)
Query: 12 LVLLQGFQPWRTLRPMPLDNGSSTQA--------------------ERPTNFSSSMMKVF 51
+VLL G PW + + +D+ A ++ S+ +++
Sbjct: 83 IVLLGGGAPWTMSKQLEIDSKPRDIAFLDSYALERWECVLHYMVGSQQQEGISADAVRIL 142
Query: 52 QRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLE 109
L +RD+E +P +T++GFQFLL+DT+AQ+WY + +Y+ + RG++ + ++FL +
Sbjct: 143 LHAGLMKRDEEDGSPVITQAGFQFLLLDTSAQVWYFILQYLDTVEARGLDLVECLTFLFQ 202
Query: 110 LSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS 169
L+F G+ Y+ +S+ ++ + GLV Q+ RK F PT+LA N++
Sbjct: 203 LNFSTLGKDYSTQGMSDGLLMFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQDKPI 261
Query: 170 AR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFEN 226
+R KE F++VETN+R+YAY+ S L ++ LF ++ Y+ PNL+V +T++S+ A ++
Sbjct: 262 SRDLEKERFVIVETNYRVYAYTNSNLQVALIGLFCELLYRFPNLVVAILTRDSVRAALKS 321
Query: 227 GITAEQIISFLQQNAHPRVAD-RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
GITA QI+ +L Q+AH ++ D P++P + DQI+LWE++ NR + Y +F S+
Sbjct: 322 GITAVQIVGYLNQHAHNKMIDPGPPTLPPTIVDQIKLWENERNRFIFSEGVLYSQFHSQI 381
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
FE D+A ++W+ +K +VV H +++F + +K
Sbjct: 382 DFEVLRDHAVSLGVMIWQSDRKRTMVVTKTGHDDVKKFWKRYSK 425
>gi|194749905|ref|XP_001957376.1| GF10392 [Drosophila ananassae]
gi|190624658|gb|EDV40182.1| GF10392 [Drosophila ananassae]
Length = 497
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 179/324 (55%), Gaps = 16/324 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
WR + + GS AE ++ + L+ R +++ +T GFQFLL+DT A
Sbjct: 172 WRCVLHYMVGTGSRNGAETEAISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTRA 231
Query: 81 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 140
Q+W+ + Y+ +ERG+ + +S L +LSF G Y+ +++ ++ + GL
Sbjct: 232 QVWHFMLHYLDTCEERGMPLPECLSMLFQLSFSTLGRDYSSEGMNKQMLDFLQHLREFGL 291
Query: 141 VKLQQGRKENWFIPTKLATNLS---------MSLTDSSARKEGFIVVETNFRMYAYSTSK 191
V Q+ RKE F PT+LA N++ ++ + ++ G+IVVETN+R+YAY+ S
Sbjct: 292 V-YQRKRKEGRFYPTRLALNVTSKEAAVAATLTTDEEGVQESGYIVVETNYRVYAYTDSP 350
Query: 192 LHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------ 245
L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP +
Sbjct: 351 LQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMRLVESA 410
Query: 246 ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
+P V DQI+LWE + NR T Y++F S++ F DYA+ L+W++
Sbjct: 411 IQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSIHVLVWQNE 470
Query: 306 KKMRLVVKAEIHMHMREFLRGQNK 329
+ +VV+ H ++ + + +K
Sbjct: 471 RTRTMVVQKNGHDDVKRYWKKYSK 494
>gi|343428936|emb|CBQ72481.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Sporisorium reilianum SRZ2]
Length = 493
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 164/267 (61%), Gaps = 8/267 (2%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL D N QLW ++ +Y+ ++ER ++ ++++FL L G Y+ L
Sbjct: 224 ITSRGFQFLLEDVNTQLWDLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELP 283
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS-----LTDSSARKE--GFIVV 178
E Q M++DF D GLV Q+ F PT+LAT L+ S L+ + +E G+I++
Sbjct: 284 ETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQEERGYIIL 342
Query: 179 ETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 238
ETN+R+YAY++++L +L LF ++ + PNL+VG+IT++S+ +A NGITAEQII++L
Sbjct: 343 ETNYRLYAYTSNRLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLT 402
Query: 239 QNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQS 298
+AH ++ P +P V DQIRLWE + NRV+ + +F S+ FE +YA+
Sbjct: 403 HHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLG 462
Query: 299 GLLWEDPKKMRLVVKAEIHMHMREFLR 325
L+WED K R V ++ +R+++R
Sbjct: 463 VLVWEDEGKRRFFVDEAGNVPVRDYIR 489
>gi|194872905|ref|XP_001973103.1| GG13537 [Drosophila erecta]
gi|190654886|gb|EDV52129.1| GG13537 [Drosophila erecta]
Length = 499
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 180/316 (56%), Gaps = 24/316 (7%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 188 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYL 243
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+ERGI+ + +S L +LSF G Y+ ++ + ++ + GLV Q+ RKE
Sbjct: 244 DTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEG 302
Query: 151 WFIPTKLATNL---------SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
F PT+LA N+ S+++ + + + G+IVVETN+R+YAY+ S L +L LF+
Sbjct: 303 RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFT 362
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM--------PSVP 253
++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP + RM +P
Sbjct: 363 ELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNM--RMVESAIQSKSCLP 420
Query: 254 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVK 313
V DQI+LWE + NR T Y++F S F DYA+ L+W++ + +VV+
Sbjct: 421 PTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQ 480
Query: 314 AEIHMHMREFLRGQNK 329
H ++ + + +K
Sbjct: 481 KNGHDDVKRYWKKYSK 496
>gi|195477975|ref|XP_002086439.1| GE22863 [Drosophila yakuba]
gi|194186229|gb|EDW99840.1| GE22863 [Drosophila yakuba]
Length = 499
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 178/314 (56%), Gaps = 20/314 (6%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 188 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYL 243
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+ERGI+ + +S L +LSF G Y+ ++ + ++ + GLV Q+ RKE
Sbjct: 244 DTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEG 302
Query: 151 WFIPTKLATNL---------SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
F PT+LA N+ S+++ + + + G+IVVETN+R+YAY+ S L +L LF+
Sbjct: 303 RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFT 362
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------ADRMPSVPEN 255
++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP + +P
Sbjct: 363 ELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMRLVESAIQSKSCLPPT 422
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
V DQI+LWE + NR T Y++F S F DYA+ L+W++ + +VV+
Sbjct: 423 VVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKN 482
Query: 316 IHMHMREFLRGQNK 329
H ++ + + +K
Sbjct: 483 GHDDVKRYWKKYSK 496
>gi|21357821|ref|NP_648780.1| marionette [Drosophila melanogaster]
gi|7294263|gb|AAF49614.1| marionette [Drosophila melanogaster]
gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
Length = 499
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 180/316 (56%), Gaps = 24/316 (7%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 188 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYL 243
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+ERGI+ + +S L +LSF G Y+ ++ + ++ + GLV Q+ RKE
Sbjct: 244 DTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEG 302
Query: 151 WFIPTKLATNL---------SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
F PT+LA N+ S+++ + + + G+IVVETN+R+YAY+ S L +L LF+
Sbjct: 303 RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFT 362
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM--------PSVP 253
++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP + RM +P
Sbjct: 363 ELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNM--RMVESAIHSKSCLP 420
Query: 254 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVK 313
V DQI+LWE + NR T Y++F S F DYA+ L+W++ + +VV+
Sbjct: 421 PTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQ 480
Query: 314 AEIHMHMREFLRGQNK 329
H ++ + + +K
Sbjct: 481 KNGHDDVKRYWKKYSK 496
>gi|195327811|ref|XP_002030611.1| GM24480 [Drosophila sechellia]
gi|194119554|gb|EDW41597.1| GM24480 [Drosophila sechellia]
Length = 499
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 180/316 (56%), Gaps = 24/316 (7%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 188 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYL 243
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+ERGI+ + +S L +LSF G Y+ ++ + ++ + GLV Q+ RKE
Sbjct: 244 DTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEG 302
Query: 151 WFIPTKLATNL---------SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
F PT+LA N+ S+++ + + + G+IVVETN+R+YAY+ S L +L LF+
Sbjct: 303 RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFT 362
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM--------PSVP 253
++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP + RM +P
Sbjct: 363 ELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNM--RMVESAIHSKSCLP 420
Query: 254 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVK 313
V DQI+LWE + NR T Y++F S F DYA+ L+W++ + +VV+
Sbjct: 421 PTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQ 480
Query: 314 AEIHMHMREFLRGQNK 329
H ++ + + +K
Sbjct: 481 KNGHDDVKRYWKKYSK 496
>gi|328873270|gb|EGG21637.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 453
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 169/281 (60%), Gaps = 14/281 (4%)
Query: 56 LSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVA 115
L++++ + +T GF+F+L D Q+W ++ Y++ + RG + + + FL +LSF
Sbjct: 172 LTKKNGTSIAITSEGFKFMLKDIYTQIWTLIIVYLNTLESRGRPRKEALIFLFKLSFLTL 231
Query: 116 GEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT--------- 166
G++Y L L+ Q+ M+ D + GLV ++ K + F PT+LA +L+ T
Sbjct: 232 GKSYYLADLNPNQRDMLFDLKEFGLVYVR-SEKSDVFYPTRLAISLATGRTVSLMNDLAQ 290
Query: 167 --DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 224
+S + +G++++ETNFR+YAY+ S L ++ LF K+ Y+LPNL VG +T+ES+ +A
Sbjct: 291 EISTSQKDQGYLILETNFRIYAYTQSSLQISLISLFVKMLYRLPNLAVGILTRESVRSAL 350
Query: 225 ENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 284
+GITA+QI+ F++QNAHP + + PE V +QIRLWES+ NR+ A +D FP+
Sbjct: 351 LHGITADQIVDFVKQNAHPNMV--ISGYPEVVFEQIRLWESERNRITYKKAVLFDSFPNA 408
Query: 285 DVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+ F +A+DQ L+W D K LVV E +R +++
Sbjct: 409 ESFSKTVTFAKDQYFLVWFDETKKMLVVNDEGSEPIRNYIK 449
>gi|156378083|ref|XP_001630974.1| predicted protein [Nematostella vectensis]
gi|156218005|gb|EDO38911.1| predicted protein [Nematostella vectensis]
Length = 471
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 176/306 (57%), Gaps = 9/306 (2%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEA--PRLTESGFQFLLMDTNAQLWYIVRE 88
GS+ A+ S ++KV L + + P ++ +GFQFLL+D +Q+WY + +
Sbjct: 166 TGSTEMADNAGGVSQDVVKVLVLSGLMKCESPGSNPIISPAGFQFLLLDRPSQVWYFMLQ 225
Query: 89 YISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRK 148
+ + RG++ + +S L +LSF G+ Y + L++ Q ++ ++GLV Q+ RK
Sbjct: 226 CLETVEARGMDLVECLSLLFQLSFSSPGKDYPTDGLTDSQMKFLQQLREIGLV-FQRKRK 284
Query: 149 ENWFIPTKLATNLS-----MSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
+ PTKL+ NL+ ++ TDS + GFI++ETN+R+YAY+ S L ++ LF ++
Sbjct: 285 SRRYYPTKLSVNLTAAGKGINTTDSQI-EAGFIIIETNYRVYAYTESCLQVSLIGLFCEI 343
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLW 263
+ PNL V ++T+ES A +GI+AEQI++FLQ AHP + R P +P + DQ+RLW
Sbjct: 344 LCRFPNLCVASLTRESCQQALASGISAEQILNFLQTRAHPEMLKRTPIIPSTISDQVRLW 403
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
E + +R++ T Y++F S+ FE YA D L+W + K +VV H ++ F
Sbjct: 404 EMERSRMKFTEGVLYNQFLSQADFEMLRKYAEDLGVLIWANSTKRVVVVSRSGHDDVKRF 463
Query: 324 LRGQNK 329
+ Q +
Sbjct: 464 WKRQRQ 469
>gi|402866404|ref|XP_003897374.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial,
partial [Papio anubis]
Length = 1647
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 176/313 (56%), Gaps = 37/313 (11%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 227 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 286
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 287 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 345
Query: 169 SARKEGFIVVETNFRMYAY---------------------------------STSKLHCE 195
+ + GFIVVETN+R+YAY S S+L
Sbjct: 346 TVHQPGFIVVETNYRLYAYTGEVGQSAPEEKKEGLEGVWVWGWPPHPLSIPGSESELQIA 405
Query: 196 ILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPEN 255
++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P
Sbjct: 406 LIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPT 465
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
+ DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E+ K +VV
Sbjct: 466 ITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPA 525
Query: 316 IHMHMREFLRGQN 328
H ++ F + Q
Sbjct: 526 GHSDVKRFWKRQK 538
>gi|403417620|emb|CCM04320.1| predicted protein [Fibroporia radiculosa]
Length = 472
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 175/301 (58%), Gaps = 10/301 (3%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS PT S ++ + QR GL++ A ++T SGFQFLL +AQLW ++ +Y+
Sbjct: 165 SSGTGHYPTRPSQEVLFLLQRSGLMTNAHGGALQITSSGFQFLLHSPHAQLWELLVQYLY 224
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
+ER ++ D++SFLL LS G Y+ L+ Q +M+ D + GLV QQ
Sbjct: 225 MVEERQMDLVDVLSFLLMLSTMELGREYSTENLTATQTAMLTDLRNYGLV-WQQSPSSRR 283
Query: 152 FIPTKLATNLSMSL--------TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
F P++LAT L+ S + + EGFIV+ETN+R+YAY+ + L +L LF +
Sbjct: 284 FSPSRLATTLTSSSSPLPTSQNSGTGPHGEGFIVLETNYRIYAYTDNPLQIAVLNLFVTL 343
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLW 263
+ + PNL++GAIT+ES+ A NGITA+QIIS+L +AHP++ P +P V DQIRLW
Sbjct: 344 KSRFPNLVIGAITRESVKKALANGITADQIISYLTAHAHPQMHKNKPLLPVTVQDQIRLW 403
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
E + NRV+ + Y F S+ +E +YA+ +LWE+P + + H ++R F
Sbjct: 404 ELERNRVKSEEGYLYTSFASQADYEYVLNYAKQLDVVLWENPSRRSFFGSLDGHANIRGF 463
Query: 324 L 324
+
Sbjct: 464 I 464
>gi|170120252|ref|XP_001891159.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633568|gb|EDQ98188.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 182/306 (59%), Gaps = 15/306 (4%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS + PT S ++ + QR GL++ + ++T +GFQFLL + QLW ++ +Y+
Sbjct: 164 SSGSGQNPTKPSVRVLFLLQRSGLMTTVGQGPLQITSAGFQFLLHSPHEQLWELLLQYLH 223
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
++ER ++ D++ FL LS G Y+ LS+ Q +M++D D GL+ ++ +
Sbjct: 224 LTEERQMDLVDVLGFLFMLSTMELGREYSTERLSKTQTAMLEDLVDYGLIWRRKPSSKG- 282
Query: 152 FIPTKLATNLSMS-------LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
F PT+LAT L+ S + + S +EGFIV+ETN+R+YAY+ + L IL LF ++
Sbjct: 283 FHPTRLATTLTSSSPPLPSSIGNRSGPQEGFIVLETNYRIYAYTDNPLQTAILNLFVSLK 342
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM------PSVPENVCD 258
Y+ PNL+VGAIT++S+ A NGI+A+QIIS+L +AHP++ + P +P V D
Sbjct: 343 YRFPNLVVGAITRDSVKKALLNGISADQIISYLMSHAHPQMRKNVRLRSCNPLLPVTVQD 402
Query: 259 QIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHM 318
QIRLWE + NR++ + Y F S+ ++ +YA++ +LWE+P K + H
Sbjct: 403 QIRLWELEKNRLKSQEGYLYTSFASQADYDFVLNYAKELGVVLWENPVKRCFFGSLDGHA 462
Query: 319 HMREFL 324
++R F+
Sbjct: 463 NIRGFI 468
>gi|91094191|ref|XP_971121.1| PREDICTED: similar to TFIIH basal transcription factor complex p52
subunit [Tribolium castaneum]
gi|270010854|gb|EFA07302.1| hypothetical protein TcasGA2_TC015892 [Tribolium castaneum]
Length = 472
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 191/347 (55%), Gaps = 30/347 (8%)
Query: 12 LVLLQGFQPWRTLRPMPLDNGSS--------------------TQAERPTNFSSSMMKVF 51
+ LL G +PW + +D+ + +++ S+ +++
Sbjct: 125 IALLGGGKPWSMSSALEVDSKARDVSFLDAYSLERWECVLHYMVGSQQQEGISADAVRIL 184
Query: 52 QRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLE 109
L +RD+E +P +T GFQFLL+D AQ+W+ + +Y+ ++RG++ + ++FL +
Sbjct: 185 LHAGLMKRDEEDGSPVITRQGFQFLLLDRQAQVWHFLLQYLDTVEQRGLSLVECLTFLFQ 244
Query: 110 LSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS 169
LSF G+ Y+ +S ++ + GLV Q+ RK F PT+LA N++ S +
Sbjct: 245 LSFSTLGKDYSTEGMSPGLLIFLQHLREFGLV-YQRKRKAGRFYPTRLALNITCSQGPET 303
Query: 170 ARKE-----GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 224
E G+I+VETN+R+YAY+ S L ++ LF+++ Y+ PNL+VG IT++S+ A
Sbjct: 304 RILEEDTPKGYIIVETNYRVYAYTDSNLQVALIGLFTELMYRFPNLVVGVITRDSIRQAL 363
Query: 225 ENGITAEQIISFLQQNAHPRV--ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFP 282
+ GITA+QII +L+Q+AHP++ + +P V DQI+LWE + NR+ + Y +F
Sbjct: 364 KGGITADQIIGYLKQHAHPQMLEGEAKHPLPPTVVDQIKLWEIERNRLTYSEGVLYSQFL 423
Query: 283 SRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
S+ F +YA+ L+W + +K L++ H +++F + +K
Sbjct: 424 SQADFNILKEYAQSNGHLIWCNKEKRTLIINKSAHDDVKKFWKRYSK 470
>gi|391335225|ref|XP_003741996.1| PREDICTED: general transcription factor IIH subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 172/300 (57%), Gaps = 8/300 (2%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKEAPR----LTESGFQFLLMDTNAQLWYIVREYISN 92
+E + S +++ L +++ ++P +T GFQFLLMDT Q+WY + +Y+S
Sbjct: 156 SEVESGISQDAVRILLHSGLMKKEDDSPNSKNLITMEGFQFLLMDTEDQVWYFILQYLST 215
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
+ RG++ D + F+ +LSF G+ Y++ +SE ++ + GLV Q+ RK F
Sbjct: 216 VETRGVSLVDCLQFIFQLSFLTLGKDYSIKGVSENLLVFLQHLREFGLV-YQRKRKSGRF 274
Query: 153 IPTKLATNLSMSLTDSSARKE--GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNL 210
PT+LA L+ L + A K+ G+I+VETN+R+YAY+ S L +L LF ++ Y+ PNL
Sbjct: 275 YPTRLAIGLASGLKELQATKDEQGYIIVETNYRVYAYTDSPLQVALLSLFCELLYRFPNL 334
Query: 211 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS-VPENVCDQIRLWESDLNR 269
+V +T+ES+ A + GIT+ QI FL+ +H V +R +P V DQ+RLWE + +R
Sbjct: 335 LVAVLTRESVRQALKGGITSNQITHFLKSRSHRVVLEREEGIIPMTVTDQLRLWELERDR 394
Query: 270 VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ + Y +F + FE +YARD L +E+P+K LVV +R+F + K
Sbjct: 395 FKFGESVLYSQFQTTGDFEMLRNYARDIGVLKYENPQKRFLVVSKSGDAEVRQFWKRHKK 454
>gi|388857860|emb|CCF48525.1| probable TFB2-TFIIH subunit (transcription/repair factor) [Ustilago
hordei]
Length = 492
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 162/267 (60%), Gaps = 8/267 (2%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL D N QLW ++ +Y+ ++ER ++ ++++FL L G Y+ L
Sbjct: 223 ITSRGFQFLLEDVNTQLWDLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELP 282
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS-----LTDSSARKE--GFIVV 178
E Q M++DF D GLV Q+ F PT+LAT L+ S L+ + A +E G+I++
Sbjct: 283 ETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAIPLLSSNGAEQEERGYIIL 341
Query: 179 ETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 238
ETN+R+YAY+++ L +L LF ++ + PNL+VG+IT++S+ +A NGITAEQII++L
Sbjct: 342 ETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLT 401
Query: 239 QNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQS 298
+AH ++ P +P V DQIRLWE + NRV + +F S+ FE +YA+
Sbjct: 402 HHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVVQNLGSLFTDFTSQFDFEEVRNYAKQLG 461
Query: 299 GLLWEDPKKMRLVVKAEIHMHMREFLR 325
L+WED K R V + +R+++R
Sbjct: 462 VLVWEDESKRRFFVDEAGNEPVRDYIR 488
>gi|330918142|ref|XP_003298106.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
gi|311328891|gb|EFQ93800.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
Length = 482
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 163/280 (58%), Gaps = 20/280 (7%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S S + G L R +PR+T+ GF F+L +TNAQ+W ++ Y+ + E G+++ ++
Sbjct: 173 SPSTKTLLNTGDLVRTIHGSPRITKDGFSFVLQETNAQVWSLLIIYLKVTNELGMSETEV 232
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS- 162
++FL L G+ Y+ +TLS Q M+ D + +GL+ + + F PT+LAT L+
Sbjct: 233 LAFLFMLGSLELGQDYSTSTLSPTQLRMLDDLSSMGLI-YRSDKNARTFYPTRLATTLTS 291
Query: 163 -----MSLTD-------------SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
MS + S+A +GFI++ETN+R+YAY+ S + IL LF+K++
Sbjct: 292 DSGSAMSASSNDIAQAGQGNAGPSAAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQ 351
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWE 264
++ PNL+ G +TKES++ A ++GIT+ QIIS+L AHP++ +P +P V DQIRLWE
Sbjct: 352 HRFPNLVSGKLTKESVHKAVQSGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWE 411
Query: 265 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWED 304
+ RVE TP + EF S + YA L+W++
Sbjct: 412 YEGERVETTPGYLMREFSSDTEYRDVMGYASALGVLVWQN 451
>gi|332030486|gb|EGI70174.1| General transcription factor IIH subunit 4 [Acromyrmex echinatior]
Length = 550
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 172/281 (61%), Gaps = 7/281 (2%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQ 94
+++ S+ +++ L +RD+ +P +T++GFQFLL+DT +Q+WY + +Y+ +
Sbjct: 167 SQQQEGISADAVRILLHAGLMKRDEADGSPIITQAGFQFLLLDTASQVWYFILQYLDTIE 226
Query: 95 ERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
RG++ + ++FL +L+F G+ Y+ +SE + ++ + GLV Q+ RK F P
Sbjct: 227 ARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYP 285
Query: 155 TKLATNLSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
T+LA N++ T R KEG+I+VETN+R+YAY+ S L +L LF ++ Y+ PN++
Sbjct: 286 TRLALNIATGETKPLTRDTDKEGYIIVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNVV 345
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRV 270
V +T++S+ A ++GITA QI+ +L+Q+AH ++ + P + P + DQI+LWE++ NR
Sbjct: 346 VSILTRDSVRQALKSGITASQIVGYLRQHAHSKMIEAGPPILPPTIVDQIKLWENERNRF 405
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLV 311
+ Y +F S+ FE D+A L+W+ ++ L+
Sbjct: 406 LFSEGVLYSQFLSQTDFEVLRDHAVSTGVLIWQSERRSTLL 446
>gi|443894209|dbj|GAC71558.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Pseudozyma antarctica
T-34]
Length = 491
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 159/267 (59%), Gaps = 8/267 (2%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL D N QLW+++ +Y+ ++ER ++ ++++FL L G Y+ L
Sbjct: 222 ITSRGFQFLLEDVNTQLWHLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELP 281
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS-------MSLTDSSARKEGFIVV 178
E Q M++DF D GLV Q+ F PT+LAT L+ +S S + G+I++
Sbjct: 282 ETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAAPLLSTNGSEPEERGYIIL 340
Query: 179 ETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 238
ETN+R+YAY+++ L +L LF ++ + PNL+VG+IT++S+ +A NGITAEQII++L
Sbjct: 341 ETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLLVGSITRDSVKSALANGITAEQIITYLT 400
Query: 239 QNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQS 298
+AH ++ P +P V DQIRLWE + NRV+ + +F S+ F +YA
Sbjct: 401 HHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQPDFAEVRNYASQLG 460
Query: 299 GLLWEDPKKMRLVVKAEIHMHMREFLR 325
L+W D K RL V + +R+++R
Sbjct: 461 VLVWHDEPKRRLFVDEAGNEPVRDYIR 487
>gi|451996931|gb|EMD89397.1| hypothetical protein COCHEDRAFT_1141584 [Cochliobolus
heterostrophus C5]
Length = 482
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 162/275 (58%), Gaps = 20/275 (7%)
Query: 49 KVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLL 108
K+ G L R +PR+T+ GF F+L +TNAQ+W ++ Y+ + E G+++ +++SFL
Sbjct: 178 KLLHTGDLVRTIHGSPRITKDGFSFVLQETNAQVWSLLIVYLKMTNELGMSETEVLSFLF 237
Query: 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS------ 162
L G+ Y+ +TLS Q M++D + +GLV + R F PT+LAT L+
Sbjct: 238 MLGSLELGQDYSTSTLSATQLQMLEDLSAMGLV-YRSDRNARTFYPTRLATTLTSDSGSA 296
Query: 163 MSLTDS-------------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
MS + + +A +GFI++ETN+R+YAY+ S + IL LF+K++++ PN
Sbjct: 297 MSTSSNDIAQASTSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPN 356
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNR 269
L+ G +TKES++ A + GIT+ QIIS+L AHP++ +P +P V DQIRLWE + R
Sbjct: 357 LVSGKLTKESVHKAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGER 416
Query: 270 VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWED 304
VE T + EF S + +YA L+W++
Sbjct: 417 VETTTGYLMREFGSDAEYRDVLNYASALGVLVWQN 451
>gi|392594388|gb|EIW83712.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 486
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 175/317 (55%), Gaps = 26/317 (8%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS Q + PT + ++ + QR GL++ ++T SGFQFLL + QLW ++ +Y+
Sbjct: 163 SSGQGQYPTKPTQGVLYLLQRSGLMASYHGSTLQITSSGFQFLLYSPHDQLWDLLLQYLH 222
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
+ER ++ +++SF LS G Y+ LSE QK+M++D D GLV Q+
Sbjct: 223 MVEERQMDLVEVLSFFFMLSTMELGREYSTEPLSETQKAMLEDLRDYGLV-WQRKASSKR 281
Query: 152 FIPTKLATNL---SMSLTDSSARK---------------------EGFIVVETNFRMYAY 187
F PT+LAT L S SL + + GFIV+ETN+R+YAY
Sbjct: 282 FSPTRLATTLTSVSPSLPTAGGSRNPGSAPGASSVANSTGINTNDHGFIVLETNYRVYAY 341
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD 247
+ + L +L LF ++Y+ PNL+VG +T+ES+ A NGI+AEQ+IS+L +AHP++
Sbjct: 342 TDNPLQIAVLNLFITLKYRFPNLVVGMLTRESVRRALGNGISAEQVISYLTAHAHPQMRK 401
Query: 248 RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKK 307
P +P V DQ+RLWE + NR++ Y +F ++ +E YA++ +LWE+ K
Sbjct: 402 NNPLLPVTVQDQVRLWELERNRLKSDDGFLYKDFATQADYEYVLAYAKELDVVLWENTSK 461
Query: 308 MRLVVKAEIHMHMREFL 324
+ H ++R F+
Sbjct: 462 RCFFGTLDGHTNVRGFI 478
>gi|50557260|ref|XP_506038.1| YALI0F30173p [Yarrowia lipolytica]
gi|62901293|sp|Q6BZX4.1|TFB2_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49651908|emb|CAG78851.1| YALI0F30173p [Yarrowia lipolytica CLIB122]
Length = 467
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 173/304 (56%), Gaps = 19/304 (6%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S ++ + + L ++ R+T +GFQFLL D NAQ+W ++ +Y++ S+ ++ D+
Sbjct: 158 SDGVLNLLKHSGLMEPERGGLRITNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDV 217
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM 163
++F+ L G+ Y+L+ LSE QK M++D D G+V Q+ F PT+LAT L+
Sbjct: 218 LNFIFMLGSLELGQDYSLSALSETQKHMLEDLRDYGIV-YQRKASSRRFYPTRLATTLTS 276
Query: 164 ------------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
+++ S A GFI++ETNFR+YAY+ S L +L LF ++
Sbjct: 277 ETAALRTASQSMEAATQDTISSSVAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKT 336
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWES 265
+ N++ G I ++S+ A NGITAEQII++L +AHPR+ +P V DQI+LW+
Sbjct: 337 RFANMVTGQINRDSVRFALSNGITAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQL 396
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+++R+ T + + EF + D ++ YA++ LL+E+P K + V + EF++
Sbjct: 397 EMDRIRATDGYLFSEFKNFDEYKDVSTYAKELGVLLYENPGKRKFVSTLAGSQQIVEFVK 456
Query: 326 GQNK 329
+N+
Sbjct: 457 RRNQ 460
>gi|71024427|ref|XP_762443.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
gi|46097692|gb|EAK82925.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
Length = 491
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 163/267 (61%), Gaps = 8/267 (2%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL D N QLW ++ +Y+ ++ER ++ ++++FL L G Y+ L
Sbjct: 222 ITSRGFQFLLEDVNTQLWDLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELP 281
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS-----LTDSSARKE--GFIVV 178
E Q M++DF D GLV Q+ F PT+LAT L+ S L+ + +E G+I++
Sbjct: 282 ETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQEERGYIIL 340
Query: 179 ETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 238
ETN+R+YAY+++ L +L LF ++ + PNL+VG+IT++S+ +A NGITAEQII++L
Sbjct: 341 ETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLT 400
Query: 239 QNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQS 298
+AH ++ P +P V DQIRLWE + NRV+ + +F S+ FE +YA+
Sbjct: 401 HHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLG 460
Query: 299 GLLWEDPKKMRLVVKAEIHMHMREFLR 325
L+W+D +K R V + +R+++R
Sbjct: 461 VLVWQDEEKRRFFVDEAGNEPVRDYIR 487
>gi|403308524|ref|XP_003944708.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 1752
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 176/318 (55%), Gaps = 42/318 (13%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 326 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 385
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 386 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 444
Query: 169 SARKEGFIVVETNFRMYAY--------------------------------------STS 190
+ + GFIVVETN+R+YAY S S
Sbjct: 445 TVHQPGFIVVETNYRLYAYTGEVGQRAPGRAGWGRGNARLEGVWVWGWPPHPLSIPGSES 504
Query: 191 KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMP 250
+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P
Sbjct: 505 ELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTP 564
Query: 251 SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRL 310
+P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E+ K +
Sbjct: 565 VLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLM 624
Query: 311 VVKAEIHMHMREFLRGQN 328
VV H ++ F + Q
Sbjct: 625 VVTPAGHSDVKRFWKRQK 642
>gi|62088538|dbj|BAD92716.1| VARS2L protein variant [Homo sapiens]
Length = 1653
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 176/318 (55%), Gaps = 42/318 (13%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 228 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 287
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 288 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 346
Query: 169 SARKEGFIVVETNFRMYAY--------------------------------------STS 190
+ + GFIVVETN+R+YAY S S
Sbjct: 347 TVHQPGFIVVETNYRLYAYTGEAGQRAPGRGGWGHLKEGLEGVWVWGWPPLPLSIPGSES 406
Query: 191 KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMP 250
+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P
Sbjct: 407 ELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTP 466
Query: 251 SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRL 310
+P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E+ K +
Sbjct: 467 VLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLM 526
Query: 311 VVKAEIHMHMREFLRGQN 328
VV H ++ F + Q
Sbjct: 527 VVTPAGHSDVKRFWKRQK 544
>gi|451847848|gb|EMD61155.1| hypothetical protein COCSADRAFT_97372 [Cochliobolus sativus ND90Pr]
Length = 482
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 161/275 (58%), Gaps = 20/275 (7%)
Query: 49 KVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLL 108
K+ G L R +PR+T+ GF F+L +TNAQ+W ++ Y+ + E G+++ +++SFL
Sbjct: 178 KLLHTGDLVRTIHGSPRITKDGFSFVLQETNAQVWSLLIVYLKMTNELGMSETEVLSFLF 237
Query: 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS------ 162
L G+ Y+ +TLS Q M++D + +GLV + R F PT+LAT L+
Sbjct: 238 MLGSLELGQDYSTSTLSATQLQMLEDLSAMGLVYRSE-RNARTFYPTRLATTLTSDSGSA 296
Query: 163 MSLTDS-------------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
MS + +A +GFI++ETN+R+YAY+ S + IL LF+K++++ PN
Sbjct: 297 MSASSKDIAQASTSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPN 356
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNR 269
L+ G +TKES++ A + GIT+ QIIS+L AHP++ +P +P V DQIRLWE + R
Sbjct: 357 LVSGKLTKESVHKAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGER 416
Query: 270 VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWED 304
VE T + EF S + +YA L+W++
Sbjct: 417 VETTTGYLMREFGSDAEYRDVLNYASALGVLVWQN 451
>gi|169784197|ref|XP_001826560.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus oryzae RIB40]
gi|238508739|ref|XP_002385554.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|83775305|dbj|BAE65427.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688446|gb|EED44799.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|391868531|gb|EIT77745.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 480
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 179/322 (55%), Gaps = 36/322 (11%)
Query: 38 ERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER 96
+R N S + ++ Q G L+ RD+ +T+ GF F+L D + Q+W+I+ Y+ ++
Sbjct: 164 QRDANLSKGVKQLLQAGHLVEIRDRRV-EITQDGFAFVLQDVSTQVWHILMLYVESADAI 222
Query: 97 GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156
G++ +++SF+ LS G+AY+ L+ Q + D AD G+V Q + F PT+
Sbjct: 223 GMSSVEVLSFVFLLSSLELGKAYDKKHLTSNQLRTLTDLADFGIV-YQDSPDASHFYPTR 281
Query: 157 LATNLSM----------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 200
LAT L+ S T S+ GFI+VETN+R+YAY++S L ++ LF
Sbjct: 282 LATTLTSDSSALSNPISGSLSGPSGTGSNKAGSGFIIVETNYRLYAYTSSPLQISLIALF 341
Query: 201 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------ADR 248
+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++ A
Sbjct: 342 TTLKYRFPNLITGKITRQSVRRAIEMGITADQIISYLATHAHPQMRKHNVSRSTSNQAGI 401
Query: 249 MPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPK 306
PSV P V DQIRLW+ + +RV+ TP + +F S +EA C YA + L+W+ D K
Sbjct: 402 PPSVLPPTVTDQIRLWQLERDRVKATPGFLFKDFVSLAEYEAPCRYAEEIGVLVWKSDRK 461
Query: 307 KMRLVVKAEIHMHMREFLRGQN 328
+M V + H + FLR +
Sbjct: 462 RMFFVTR---HEQVAAFLRSRK 480
>gi|156057729|ref|XP_001594788.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980]
gi|154702381|gb|EDO02120.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 420
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 184/327 (56%), Gaps = 25/327 (7%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
W + ++N ++ + + + S+ K+ G L R + +T++GF FLL + NA
Sbjct: 96 WEGILHYMVNNVAAGSGQEGSGPAGSVKKLLDAGKLVTRGRSV-GITQAGFSFLLQEANA 154
Query: 81 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 140
Q+W ++ +I N++ G++ D++SFL L G AY+ TL++ Q +M+ + D GL
Sbjct: 155 QVWTLLLLWIENAESMGMDSVDVLSFLFMLGSLELGRAYSTTTLTDAQHNMLGNLIDFGL 214
Query: 141 VKLQQGRKENWFIPTKLATNLSM-------------SLTDSSARKEGFIVVETNFRMYAY 187
+ L +F PT+LAT L+ + + S+A ++GFI++ETN+R+YAY
Sbjct: 215 IYLPPSAPTQFF-PTRLATTLTSDASALRTVSAGFDAASKSAANQKGFIIIETNYRLYAY 273
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-- 245
+ S L +L LF+K+ + PN++ G ++++S+ A +GIT++QII++L +AHP++
Sbjct: 274 TNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAISHGITSDQIITYLSTHAHPQLVK 333
Query: 246 ----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
A P +P V DQIRLW+ + R++ P + EF + +E YA + L+
Sbjct: 334 ASTAAHGGPVLPPTVVDQIRLWQLENERMKAVPGFLFKEFDGQKEYEGCAKYAEEVGVLV 393
Query: 302 WE-DPKKMRLVVKAEIHMHMREFLRGQ 327
W+ D K+M V + E +R++++ +
Sbjct: 394 WKNDAKRMFFVTRVE---QLRDYIKAR 417
>gi|390461382|ref|XP_002746360.2| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Callithrix jacchus]
Length = 1675
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 176/319 (55%), Gaps = 43/319 (13%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 248 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 307
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 308 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 366
Query: 169 SARKEGFIVVETNFRMYAY---------------------------------------ST 189
+ + GFIVVETN+R+YAY S
Sbjct: 367 TVHQPGFIVVETNYRLYAYTGEAGQRAPGRAGWGXHLKERFEGVWVWGWPPHPLSIPGSE 426
Query: 190 SKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM 249
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 427 SELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQT 486
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E+ K
Sbjct: 487 PVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRL 546
Query: 310 LVVKAEIHMHMREFLRGQN 328
+VV H ++ F + Q
Sbjct: 547 MVVTPAGHSDVKRFWKRQK 565
>gi|301786953|ref|XP_002928911.1| PREDICTED: LOW QUALITY PROTEIN: valyl-tRNA synthetase,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 1637
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 177/322 (54%), Gaps = 46/322 (14%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 205 QAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 264
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 265 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 323
Query: 169 SARKEGFIVVETNFRMYAYST--------------------------------------- 189
+A + GFIVVETN+R+YAY+
Sbjct: 324 TAHQPGFIVVETNYRLYAYTGEARQRAPNSRXGVGTFLVTLEGLEGVWVWGXPSSSLPIP 383
Query: 190 ---SKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA 246
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP +
Sbjct: 384 GPESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVML 443
Query: 247 DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPK 306
+ P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E+
Sbjct: 444 KQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSA 503
Query: 307 KMRLVVKAEIHMHMREFLRGQN 328
K +VV H ++ F + Q
Sbjct: 504 KRLMVVTPAGHSDVKRFWKRQK 525
>gi|189205068|ref|XP_001938869.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985968|gb|EDU51456.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 482
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 162/280 (57%), Gaps = 20/280 (7%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S S + G L R +PR+T+ GF F+L +TNAQ+W ++ Y+ + E G+++ ++
Sbjct: 173 SPSTKTLLNTGDLVRTIHGSPRITKDGFSFVLQETNAQVWSLLIIYLKVTNELGMSETEV 232
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS- 162
++FL L G+ Y+ +TLS Q M+ D + +GL+ + + F PT+LAT L+
Sbjct: 233 LAFLFMLGSLELGQDYSTSTLSPTQLRMLDDLSSMGLI-YRSDKNARTFYPTRLATTLTS 291
Query: 163 -----MSLTD-------------SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
MS + S+ +GFI++ETN+R+YAY+ S + IL LF+K++
Sbjct: 292 DSGSAMSASSNDIAQAGQGNAGPSATANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQ 351
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWE 264
++ PNL+ G +TKES++ A ++GIT+ QIIS+L AHP++ +P +P V DQIRLWE
Sbjct: 352 HRFPNLVSGKLTKESVHKAVQSGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWE 411
Query: 265 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWED 304
+ RVE TP + EF S + YA L+W++
Sbjct: 412 YEGERVETTPGYLMREFSSDAEYRDVMGYASALGVLVWQN 451
>gi|213402795|ref|XP_002172170.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
gi|212000217|gb|EEB05877.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
Length = 444
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 162/275 (58%), Gaps = 7/275 (2%)
Query: 46 SMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLIS 105
++ + +RG L K R+T SGFQFLL D N Q+W ++ EY+ S++ ++ ++
Sbjct: 158 GVLSLLRRGGLMTGTKNQVRITHSGFQFLLQDINTQIWTLLLEYLKLSEDTHMDPVQVLH 217
Query: 106 FLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL 165
FL L G Y+++ L++ Q+ M++D + GLV Q+ F PT+LAT+L+
Sbjct: 218 FLFMLGSLELGRDYSVHFLTDTQQIMLEDLREYGLV-YQKKSSSRRFYPTRLATSLTTEY 276
Query: 166 TD-----SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
S +GFI+VETN+R+YAY+ S L IL LF+ + + NLIVG IT++S+
Sbjct: 277 HSPVKGAGSDAGKGFIIVETNYRLYAYTDSPLQIAILGLFTNLRARFSNLIVGVITRDSI 336
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
A ++GITAEQII++L +AHP++ +P +P + DQI LWE + NR+ TP + +
Sbjct: 337 RRALQSGITAEQIITYLTTHAHPQMRKEIPLLPPTLVDQIYLWELERNRLRATPGILFRD 396
Query: 281 FPSRDVFEAACDYARDQSGLLWEDP-KKMRLVVKA 314
F + FE A YA++ L+W+ K+M + A
Sbjct: 397 FLTDKDFEKAVQYAKELGVLVWDSSLKRMFFITNA 431
>gi|169610043|ref|XP_001798440.1| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
gi|160701967|gb|EAT84391.2| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
Length = 426
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 167/301 (55%), Gaps = 30/301 (9%)
Query: 17 GFQPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLM 76
GFQP + +D G T+ K+ G L R PR+T+ GF F+L
Sbjct: 115 GFQPGS----VKMDVGPGTK------------KLLHAGDLVRTVHGTPRITKEGFSFVLQ 158
Query: 77 DTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFA 136
+TNAQ+W ++ Y+ + G+++ +++SFL L G+ Y+ +TLS Q M+ D +
Sbjct: 159 ETNAQVWNLLIVYLKMVDDLGMSETEVLSFLFMLGSLELGQDYSTSTLSPSQLHMLDDLS 218
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLS-------------MSLTDSSARKEGFIVVETNFR 183
+G+V + + F PT+LAT L+ DS A+ +GFI+VETN+R
Sbjct: 219 AMGIV-YRSSKDSPTFYPTRLATTLTSDSGALPGSDVGTTEKPDSKAQNKGFIIVETNYR 277
Query: 184 MYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 243
+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A + GIT+ QIIS+L AHP
Sbjct: 278 LYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHRAVQAGITSAQIISYLTTYAHP 337
Query: 244 RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE 303
++ P +P V DQIRLWE + RVE+T + EF S + YA+ L+W+
Sbjct: 338 QMQKSNPPLPPTVMDQIRLWEYEGERVEVTTGYLMREFGSESEYRDVMGYAQALGVLVWK 397
Query: 304 D 304
+
Sbjct: 398 N 398
>gi|221120480|ref|XP_002159945.1| PREDICTED: general transcription factor IIH subunit 4-like [Hydra
magnipapillata]
Length = 458
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 172/274 (62%), Gaps = 6/274 (2%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ ++A +T SGFQFLL+DT++Q+WY + +++++ + + Q +SFL + SF V
Sbjct: 183 LIFDHQEQATCITSSGFQFLLLDTSSQVWYFMVQHLNSMEPEILVQC--LSFLFQTSFSV 240
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT---DSSAR 171
G+ Y +N L+E Q S ++ ++GL Q+ RK F PT+LA NL ++T DSS++
Sbjct: 241 LGKDYPVNDLTEAQFSFLQLLREIGLA-FQRKRKSKRFYPTRLAINLGSAVTGNSDSSSQ 299
Query: 172 KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAE 231
++GF+VVETN+R+YAY+ S LH +L LF+ ++ + P+ V +++ES+ A GI+AE
Sbjct: 300 QQGFLVVETNYRVYAYTDSVLHIALLSLFTDIKARFPSFTVALLSRESVQQALACGISAE 359
Query: 232 QIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 291
QII FL+ AH ++ P + + DQI+LWE + +R+ + Y++F S+ FE
Sbjct: 360 QIIDFLKTRAHSQMTTSSPIIASTITDQIKLWEMERDRLRYSQGVLYNQFLSQSDFEMLR 419
Query: 292 DYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+A +++ LLW + +K +VV H ++++ +
Sbjct: 420 KFADEKNHLLWANNQKRLMVVSKSGHEDVKKYWK 453
>gi|347830304|emb|CCD46001.1| similar to RNA polymerase II transcription factor B subunit 2
[Botryotinia fuckeliana]
Length = 471
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 178/320 (55%), Gaps = 28/320 (8%)
Query: 29 LDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVRE 88
+ +GS P N S+ + G L R + +T++GF FLL + NAQ+W ++
Sbjct: 158 VTSGSGKDGNGPAN---SVKALLDAGKLVTRGR-GIGITQAGFSFLLQEANAQVWTLLLL 213
Query: 89 YISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRK 148
+I N++ G++ D++SFL L G AY+ TL+E QK M+ + DLGL+ L
Sbjct: 214 WIENAESMGMDSVDVLSFLFMLGSLELGRAYSTKTLTEAQKGMLANLIDLGLIYLPPSAP 273
Query: 149 ENWFIPTKLATNLSM-------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCE 195
+F PT+LAT L+ + + S+A ++GFI++ETN+R+YAY+ S L
Sbjct: 274 TQFF-PTRLATTLTSDASALRTVAAGFDAASKSAASQKGFIIIETNYRLYAYTNSPLQIA 332
Query: 196 ILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM------ 249
+L LF+K+ + PN++ G ++++S+ A +GIT++QII++L +AHP++
Sbjct: 333 VLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGITSDQIITYLSTHAHPQLVKASSASHGG 392
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKM 308
P +P V DQIRLW+ + R++ P +F ++ +E YA + L+W+ D K+M
Sbjct: 393 PVLPPTVVDQIRLWQLENERMKAVPGFLMKDFETQKEYEGCAKYAEEVGVLVWKSDAKRM 452
Query: 309 RLVVKAEIHMHMREFLRGQN 328
V + E +R++ + +
Sbjct: 453 FFVTRVE---QLRDYFKAKK 469
>gi|357618296|gb|EHJ71332.1| putative TFIIH basal transcription factor complex p52 subunit
[Danaus plexippus]
Length = 603
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 178/311 (57%), Gaps = 19/311 (6%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYI 90
STQ E S+ +++ + L RD E +T +GFQFLL+ T Q+W ++ Y+
Sbjct: 296 GSTQTE---GISADAVRILLQAGLMNRDAEDGTAVITRAGFQFLLLSTAKQVWLFLQHYL 352
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
+++R ++ A+ ++FL +LSF G+ Y+ +S ++ + GLV Q+ RK
Sbjct: 353 HTAEKRSLSAAECLAFLYQLSFSTLGKDYSTEGMSNNMLVFLQHLREFGLV-YQRKRKAG 411
Query: 151 WFIPTKLATNLSMSLTDS-----SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
F PT+LA N++ + D +A G+I+ ETN+R+YAY+TS L +L LF+++ Y
Sbjct: 412 RFYPTRLALNIT-CVKDGVAPLQTAASSGYIIAETNYRVYAYTTSALQVALLGLFTELVY 470
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--ADR-----MPSVPENVCD 258
+ PN++VG +T+ES+ A GI+A+QII++L+Q++HP++ +D+ S+P V D
Sbjct: 471 RFPNVVVGVLTRESVRAALRGGISAQQIITYLEQHSHPQMLKSDQGGIRSSSSLPPTVLD 530
Query: 259 QIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHM 318
QIRLWES+ NR T Y++F S+ F DY R L+W + +VV H
Sbjct: 531 QIRLWESERNRFTYTEGVVYNQFLSQAEFNVLRDYGRSSGALVWAADRTRTMVVARAAHD 590
Query: 319 HMREFLRGQNK 329
++ + + +K
Sbjct: 591 DVKRYWKRYSK 601
>gi|431907067|gb|ELK11185.1| General transcription factor IIH subunit 4 [Pteropus alecto]
Length = 447
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 167/280 (59%), Gaps = 20/280 (7%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+Q P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQT----------------PVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 404
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 405 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 444
>gi|409048320|gb|EKM57798.1| hypothetical protein PHACADRAFT_171015 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 17/305 (5%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS A RP S ++ + QR GL++ + ++T GFQFLL +AQLW ++ +Y+
Sbjct: 164 SSGIATRP---SQGVLFLLQRSGLMASIHGGSLQITSLGFQFLLHSPHAQLWELLLQYLH 220
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
+ER ++ +++SFL LS G Y++ LS Q +M++D D G++ Q+
Sbjct: 221 MVEERQMDLVEVLSFLFMLSTMELGREYSVEHLSPTQTAMLEDLRDYGII-WQRRATSKR 279
Query: 152 FIPTKLATNLSMSL--------TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
F PT+LAT L+ S +SA +GFI++ETN+R+YAY+ + L +L LF +
Sbjct: 280 FCPTRLATTLTSSSPPLPAAGGVSASAHGQGFIILETNYRLYAYTDNPLQIAVLNLFVTL 339
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAE----QIISFLQQNAHPRVADRMPSVPENVCDQ 259
+ + PNL+VGAIT+ES+ A NGITA+ QIIS+L +AHP++ P +P V DQ
Sbjct: 340 KSRYPNLVVGAITRESVKKALTNGITADQASRQIISYLTTHAHPQMRKNKPLLPVTVQDQ 399
Query: 260 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMH 319
IRLWE + NR++ + Y F S+ +E +YA+ +LWE + E H +
Sbjct: 400 IRLWELEKNRMKSQEGYLYTAFASQADYEYVLNYAKQLGVVLWESSGRRCFFGTLEGHPN 459
Query: 320 MREFL 324
+R F+
Sbjct: 460 IRGFI 464
>gi|307106040|gb|EFN54287.1| hypothetical protein CHLNCDRAFT_25123 [Chlorella variabilis]
Length = 458
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 158/265 (59%), Gaps = 7/265 (2%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISN-SQERGINQADLISFLLELSFHVAGEAYNLNT 123
++TE GFQFLL + +QLW VR+Y++ + G + A I+FLL L A A +
Sbjct: 189 KITEHGFQFLLANLYSQLWSAVRQYLTLLNTAGGADLAVAINFLLRLGLQGAAAAMAHSQ 248
Query: 124 LSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSAR---KEGFIVVET 180
L ++++ LGL+ G E W PT+LA L+ A +EG+++VE+
Sbjct: 249 LDSAERTIAAHMCQLGLLMPVPGANELWLHPTRLAAVLAGGGRAGEAAVAPEEGYVIVES 308
Query: 181 NFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 240
NFR+YAY+TS + +LR+F + + LPNL VG IT+ES NA + GI A+Q+++FL+Q+
Sbjct: 309 NFRVYAYTTSAVQVAVLRVFVRCDALLPNLFVGTITRESATNALDTGIAADQVVAFLRQH 368
Query: 241 AHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
AHPR A + P+V V DQIRLW +L R++ A YD+F S++++ A +AR + L
Sbjct: 369 AHPRAAAKTPTV---VTDQIRLWAQELKRLQEKNATLYDKFESKELYVGAVAHARQLNAL 425
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLR 325
L+ + +LVV++ H M L+
Sbjct: 426 LYSCEDRRQLVVESAFHGLMVGHLK 450
>gi|154308354|ref|XP_001553513.1| hypothetical protein BC1G_08237 [Botryotinia fuckeliana B05.10]
Length = 410
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 179/319 (56%), Gaps = 28/319 (8%)
Query: 29 LDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVRE 88
+ +GS P N S+ + G L R + +T++GF FLL + NAQ+W ++
Sbjct: 97 VTSGSGKDGNGPAN---SVKALLDAGKLVTRGR-GIGITQAGFSFLLQEANAQVWTLLLL 152
Query: 89 YISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRK 148
+I N++ G++ D++SFL L G AY+ TL+E QK M+ + DLGL+ L
Sbjct: 153 WIENAESMGMDSVDVLSFLFMLGSLELGRAYSTKTLTEAQKGMLANLIDLGLIYLPPSAP 212
Query: 149 ENWFIPTKLATNLSM-------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCE 195
+F PT+LAT L+ + + S+A ++GFI++ETN+R+YAY+ S L
Sbjct: 213 TQFF-PTRLATTLTSDASALRTVAAGFDAASKSAASQKGFIIIETNYRLYAYTNSPLQIA 271
Query: 196 ILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------ADRM 249
+L LF+K+ + PN++ G ++++S+ A +GIT++QII++L +AHP++ +
Sbjct: 272 VLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGITSDQIITYLSTHAHPQLVKASSASHGG 331
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKM 308
P +P V DQIRLW+ + R++ P +F ++ +E YA + L+W+ D K+M
Sbjct: 332 PVLPPTVVDQIRLWQLENERMKAVPGFLMKDFETQKEYEGCAKYAEEVGVLVWKSDAKRM 391
Query: 309 RLVVKAEIHMHMREFLRGQ 327
V + E +R++ + +
Sbjct: 392 FFVTRVE---QLRDYFKAK 407
>gi|328766914|gb|EGF76966.1| hypothetical protein BATDEDRAFT_92242 [Batrachochytrium
dendrobatidis JAM81]
Length = 471
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 152/271 (56%), Gaps = 9/271 (3%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
R+T GFQFLL D N Q+W + +Y+ +++ + ++++F +L G+ Y++ L
Sbjct: 193 RITSKGFQFLLQDVNVQIWAFLLQYLEMAEQLNMELVEVLNFFFQLGSLELGQDYSVEVL 252
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS--------ARKEGFI 176
+ QK M+ D LGL+ Q+ +K F PT LAT+L+ + + A +GFI
Sbjct: 253 TPTQKHMLDDLKHLGLI-YQRKKKSTRFYPTHLATSLTSGASAGAVLSPRSLEADSDGFI 311
Query: 177 VVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 236
++ETN+R+YAY+ S L +L LF ++ + N+++G IT++S+ A GI+AEQII++
Sbjct: 312 IIETNYRVYAYTDSPLQIAVLSLFIEMRVRFANMVIGIITRDSVREALAKGISAEQIIAY 371
Query: 237 LQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 296
L +AHP + P +P + DQ+RLWE + NR+ ++ H Y F + YA D
Sbjct: 372 LTTHAHPEMKKGSPVLPTTIVDQVRLWEMERNRLRISRGHLYQMFSGEQEYREILKYATD 431
Query: 297 QSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
LW K +VV AE H H++ F Q
Sbjct: 432 LGYELWHSDSKRLVVVSAEGHEHIKVFFSKQ 462
>gi|397471696|ref|XP_003807420.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Pan paniscus]
Length = 1673
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 176/325 (54%), Gaps = 49/325 (15%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 241 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 300
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 301 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 359
Query: 169 SARKEGFIVVETNFRMYAY----------------------------------------- 187
+ + GFIVVETN+R+YAY
Sbjct: 360 TVHQPGFIVVETNYRLYAYTGEAGQRAPGRGGWGALXHFSXHLKEGLEGVWVWGCPPHPL 419
Query: 188 ----STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 243
S S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP
Sbjct: 420 SIPGSESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHP 479
Query: 244 RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE 303
+ + P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E
Sbjct: 480 VMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFE 539
Query: 304 DPKKMRLVVKAEIHMHMREFLRGQN 328
+ K +VV H ++ F + Q
Sbjct: 540 NSAKRLMVVTPAGHSDVKRFWKRQK 564
>gi|195590491|ref|XP_002084979.1| GD12553 [Drosophila simulans]
gi|194196988|gb|EDX10564.1| GD12553 [Drosophila simulans]
Length = 500
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 182/327 (55%), Gaps = 21/327 (6%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
WR + + G+ + + ++ + L+ R +++ +T GFQFLL+DT A
Sbjct: 174 WRCVLHYMVGTGNRSGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTRA 233
Query: 81 QLWYIVREYISNSQERGINQADLISFLLELS-FHVAGEAYNLNTLSEIQKSMIKDFADLG 139
Q+W+ + +Y+ +ERGI+ + +S L +L+ F G Y+ ++ + ++ + G
Sbjct: 234 QVWHFMLQYLDTCEERGISLPECLSMLFQLTQFSTLGRDYSSEGMNNQMLTFLQHLREFG 293
Query: 140 LVKLQQGRKENWFIPTKLATNL---------SMSLTDSSARKEGFIVVETNFRMYAYSTS 190
LV Q+ RKE F PT+LA N+ S+++ + + + G+IVVETN+R+YAY+ S
Sbjct: 294 LV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDS 352
Query: 191 KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM- 249
L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP + RM
Sbjct: 353 PLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNM--RMV 410
Query: 250 -------PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW 302
+P V DQI+LWE + NR T Y++F S F DYA+ L+W
Sbjct: 411 ESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVW 470
Query: 303 EDPKKMRLVVKAEIHMHMREFLRGQNK 329
++ + +VV+ H ++ + + +K
Sbjct: 471 QNERTRTMVVQKNGHDDVKRYWKKYSK 497
>gi|328863850|gb|EGG12949.1| hypothetical protein MELLADRAFT_46475 [Melampsora larici-populina
98AG31]
Length = 454
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 165/280 (58%), Gaps = 14/280 (5%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GL+S ++ ++T GFQFLL D N QLW ++ +Y+ ++ ++ D++S L L
Sbjct: 173 GLISSQNS---KITSVGFQFLLDDINTQLWELLLQYLKMAEANDLDIVDVLSCLFMLGSL 229
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL-------- 165
G+ Y++ S+ Q ++ D D GLV L Q + F PT+L T L+ +
Sbjct: 230 ELGKEYSMKNFSDTQVQVLNDLVDYGLVYLTQSKT---FYPTRLVTTLTSTAPPIVSNPS 286
Query: 166 TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFE 225
SS+ F+++ETN+R+YAY+++ L IL LF + + PNL++G+IT+ES+ AF+
Sbjct: 287 DQSSSDPNEFLILETNYRIYAYTSNPLQIAILNLFISFKSRFPNLVIGSITRESIKMAFK 346
Query: 226 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
NGI A+QIIS+L+ ++H ++ P +P V DQIRLWE + NRV + Y++F S
Sbjct: 347 NGIRADQIISYLEFHSHSQMKLLKPILPNTVVDQIRLWELEKNRVRDQEGYLYEDFKSVS 406
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+E +Y++ +LWE+P+ + V + H +REF++
Sbjct: 407 DYEIVINYSKQIDIILWENPELKKFFVSLDGHTALREFIK 446
>gi|303272589|ref|XP_003055656.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463630|gb|EEH60908.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 476
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 166/292 (56%), Gaps = 34/292 (11%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
G S+ +KE +TE+GF+FLL Q+W + ++ ++SFLL+L+F
Sbjct: 192 GDASKGEKEG--VTEAGFKFLLSTAREQIWAL------------LDAPAVLSFLLKLTFQ 237
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKE 173
G AY+ + L QK +++D A LGL+ + +++PT L++ LS
Sbjct: 238 APGVAYSTDGLPASQKGVVRDVAKLGLLYPLAAAGKGYYVPTSLSSGLSGGGGGDDDGDG 297
Query: 174 G------------------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAI 215
G I+VETNFR+YAY++S + EILRLF++ +Y+LPNL VG +
Sbjct: 298 GVGGGGKKSGDGGGVGARGHIIVETNFRVYAYTSSAVEVEILRLFTRPDYKLPNLYVGMM 357
Query: 216 TKESLYNAFENGITAEQIISFLQQNAHPRVADR-MPSVPENVCDQIRLWESDLNRVEMTP 274
T+E++ A GI+AEQI+S+L+++AHP+ P++P VCDQIRLW D NRV+ TP
Sbjct: 358 TREAVVTALRGGISAEQIVSYLRKHAHPQARKTPGPAIPATVCDQIRLWSKDENRVKYTP 417
Query: 275 AHYYDEFPS-RDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
Y +FP+ +FE + A+++ LW DP ++L V+ E H M++ +
Sbjct: 418 CVLYCDFPTGTGMFEKVAEIAKERGLYLWGDPVGLKLAVREEGHESMKDVFK 469
>gi|299750117|ref|XP_001836551.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
gi|298408751|gb|EAU85259.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
Length = 403
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 8/299 (2%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
SS +RPT S + + + L +A ++ +GFQFLL + QLW+++ +Y+
Sbjct: 98 SSGSGQRPTEPSPGVRFLLKTSGLMNEIHDALHISSAGFQFLLHSPHEQLWHLLLQYLQL 157
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
+++R ++ D++SF LS G Y++ L++ Q +M++D D GL+ Q+ + F
Sbjct: 158 AEQRRMDLVDVLSFFFMLSTMELGREYSVQNLTKTQSAMLEDLRDYGLI-WQRKQTSKRF 216
Query: 153 IPTKLATNLSMSLTD-------SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
PT+L+T L+ S SS +EGFI++ETN+R+YAY+ + L +L LF+ ++Y
Sbjct: 217 SPTRLSTTLTSSSPPLPSTSGASSGPQEGFIILETNYRIYAYTDNPLQTAVLSLFASLKY 276
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWES 265
+ PNL+VG+IT+ES+ A NGI+A+QIIS+L +AHP + P +P V DQIRLWE
Sbjct: 277 RFPNLVVGSITRESVKKALLNGISADQIISYLITHAHPNMRKNNPLLPVTVQDQIRLWEL 336
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFL 324
+ NR++ Y F S+ +E YA++ +LWE+ K E H +++ F+
Sbjct: 337 EKNRLKSREGFLYTAFASQADYELVLQYAKELDVVLWENASKRCFFGSLEGHANIKGFI 395
>gi|19113355|ref|NP_596563.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe 972h-]
gi|62901133|sp|P87303.2|TFB2_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|3080538|emb|CAA18666.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe]
Length = 447
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 165/286 (57%), Gaps = 7/286 (2%)
Query: 46 SMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLIS 105
++ + +RG L K R+T +GFQFLL D NAQ+W ++ +Y+ S++ ++ ++
Sbjct: 158 GVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLH 217
Query: 106 FLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL 165
FL L G AY+++ L++ Q+ M++D + GLV Q+ F PT+LAT L+
Sbjct: 218 FLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV-YQRKITSKRFYPTRLATGLTTDY 276
Query: 166 TDSSARK------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKES 219
++ +GFI+VETN+R+YAY++S L I+ LF+ + + NL+VG IT++S
Sbjct: 277 RSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDS 336
Query: 220 LYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYD 279
+ A NGI AEQII++L +AHP++ +P +P + DQI LWE + NR+ TP +
Sbjct: 337 IRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFR 396
Query: 280 EFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+F + F+ A +YA++ L+W+ K + M +L+
Sbjct: 397 DFLTDSGFDQAVEYAKELGVLVWDSSLKRMFFITTTGAQPMIAYLK 442
>gi|389749775|gb|EIM90946.1| transcription factor Tfb2 [Stereum hirsutum FP-91666 SS1]
Length = 494
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 175/314 (55%), Gaps = 23/314 (7%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
SS + PT S ++ + QR L + ++T SGFQFLL +AQLW ++ +Y++
Sbjct: 162 SSGTGQMPTKPSQGVLYLLQRSKLMAPTQGTLQITSSGFQFLLHTPHAQLWELLLQYLAM 221
Query: 93 SQERGINQADLISFLLELSFHVAGEA-----YNLNTLSEIQKSMIKDFADLGLVKLQQGR 147
+ER ++ +++SFL LS G Y+ +LS+ QK+M++D D GL+ Q+
Sbjct: 222 VEERQMDLVEVLSFLFMLSTMELGRVRQFHDYSAESLSDTQKAMLEDLRDYGLI-WQRKA 280
Query: 148 KENWFIPTKLATNLSMSL----------TDSSARKEGFIVVETNFRMYAYSTSKLHCEIL 197
F PT+LAT L+ SL T + + +GFI++ETN+R+YAY+ + L +L
Sbjct: 281 TSRRFSPTRLATTLTSSLPPLPTASGTGTSGTGQTQGFIILETNYRLYAYTDNPLQTAVL 340
Query: 198 RLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP-------RVADRMP 250
LF ++ + PNL+VG+IT++S+ A NGITA+QIIS+L AHP R P
Sbjct: 341 NLFVTMKSRFPNLVVGSITRDSVRKALSNGITADQIISYLTTYAHPQMRKNVSRCRSFTP 400
Query: 251 SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRL 310
+P V DQIRLWE + NR++ Y F S+ +E YA+ +LWE+P K
Sbjct: 401 LLPVTVQDQIRLWELERNRLKSQEGFLYTAFASQADYEYVLTYAKQLDVVLWENPTKRCF 460
Query: 311 VVKAEIHMHMREFL 324
E H ++R F+
Sbjct: 461 FGTMEGHANIRGFI 474
>gi|348683175|gb|EGZ22990.1| hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae]
Length = 490
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 176/332 (53%), Gaps = 41/332 (12%)
Query: 32 GSSTQAERPTNFSSSMMKVFQRGLL---SRRDKEAPRLTESGFQFLLMDTNAQLWYIVRE 88
GS+ E P S++ + R L S D A +T++G++F+L D + Q+W + E
Sbjct: 159 GSTAVQEPP----QSVVDILLRTRLLQASGADSRALHITDTGYEFMLKDIHVQMWIFMLE 214
Query: 89 YISNSQERG-INQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGR 147
YI G + Q D++ FL ++S+ GE Y + L+E Q+ ++ DF D GL+ ++
Sbjct: 215 YIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLL-FRKRP 273
Query: 148 KENWFIPTKLATNL-----------SMSLTDSSA---------------------RKEGF 175
+ F T LA NL +SLT S A +
Sbjct: 274 NSDRFYTTSLAVNLIFGGSTGQKRSHVSLTSSFAGVRAGLKSQVADPRQAPTADHSAQLL 333
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
+VVETNF++YAY+TS LH +L +F + +LPNL +G IT+ESL +A +GI+A+QI
Sbjct: 334 VVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYD 393
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYAR 295
FL ++AHP++ P +PEN+ DQI LWE + NRV+ +D F +++ +E+ DYA+
Sbjct: 394 FLMKHAHPKMRRNSPVIPENIADQIYLWERERNRVQFMEGILFDGFNTKEDYESVRDYAK 453
Query: 296 DQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
D L W DP RL + +R +++ Q
Sbjct: 454 DLKVLTWSDPIHFRLSITTAGIDDVRHYIQSQ 485
>gi|67541703|ref|XP_664619.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|40742471|gb|EAA61661.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|259483674|tpe|CBF79257.1| TPA: TFIIH and nucleotide excision repair factor 3 complexes
subunit (Tfb2), putative (AFU_orthologue; AFUA_4G04360)
[Aspergillus nidulans FGSC A4]
Length = 482
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 180/322 (55%), Gaps = 36/322 (11%)
Query: 38 ERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER 96
+R N S + ++ Q G L+ RD+ +T+ GF F+L D Q+W+I+ Y+ +++
Sbjct: 166 QRDVNLSKGVKQLLQAGHLVEIRDRRV-EITQDGFAFVLQDVGTQVWHILILYVESAEAI 224
Query: 97 GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156
G++ +++SF+ LS G++Y L+ Q + D AD G+V Q + + F PT+
Sbjct: 225 GMDSVEVLSFIFLLSSLELGKSYEKKHLTSNQLRTLTDLADFGIV-YQDSPEASHFYPTR 283
Query: 157 LATNL---SMSLT-------------DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 200
LAT L S +L+ DS+ GFI++ETN+R+YAY++S L ++ LF
Sbjct: 284 LATTLTSDSSALSNPISGALSDPDGGDSNQPGSGFIIIETNYRLYAYTSSPLQISLIALF 343
Query: 201 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------ADR 248
+ ++Y+ PNL+ G +T++S+ A E GITA+QIIS+L +AHP++ A
Sbjct: 344 TTLKYRFPNLVTGKVTRQSIRRAIEMGITADQIISYLATHAHPQMRKHNVARSTSNQAGM 403
Query: 249 MPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPK 306
PSV P V DQIRLW+ + +RV+ T + +F S +EA C YA + L+W+ D K
Sbjct: 404 PPSVLPPTVVDQIRLWQLERDRVKATAGFLFKDFVSLAEYEAPCRYAEEIGVLIWKSDRK 463
Query: 307 KMRLVVKAEIHMHMREFLRGQN 328
+M V + H + FLR +
Sbjct: 464 RMFFVTR---HEQVAAFLRSRK 482
>gi|190347675|gb|EDK39997.2| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 189/371 (50%), Gaps = 61/371 (16%)
Query: 7 GNQCLLVLLQGF--QPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSR---RDK 61
G++ + L F Q W T+ + E P+ S S++ + + G L D
Sbjct: 128 GHKVTVAFLDSFASQKWETILHYMVG------TELPSKPSPSVLSLLKSGGLMEGPGTDA 181
Query: 62 EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNL 121
++T SGFQFLL D NAQ+W ++ +Y++ +Q+ ++ D+++FL L G++Y L
Sbjct: 182 RNLKITNSGFQFLLQDMNAQIWTLLLQYLNLTQDLNMDPVDVLNFLFVLGSLELGKSYYL 241
Query: 122 NTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSLTDS--- 168
+ LS+ Q SM+ D D GLV Q + + F PT+LAT L SM+L +
Sbjct: 242 SGLSDTQVSMLADLRDYGLV-YQYSDQSDRFYPTRLATTLTSESASLKTPSMALDQAVDT 300
Query: 169 -----SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
S +G I++ETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA
Sbjct: 301 SNGLDSGPGQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNA 360
Query: 224 FENGITAEQIISFLQQNAHPRV-------------------------------ADRMPSV 252
NGIT++QII+FL+ +AHP++ ++ +
Sbjct: 361 LYNGITSDQIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEIL 420
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVV 312
P V DQI+LW+ +L+R++ + + EF S+ F+ C+YA D L+W D KMR V
Sbjct: 421 PPTVVDQIKLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTKMRFFV 480
Query: 313 KAEIHMHMREF 323
+ + +F
Sbjct: 481 TKDGISQVADF 491
>gi|121714341|ref|XP_001274781.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
gi|119402935|gb|EAW13355.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
Length = 478
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 178/325 (54%), Gaps = 42/325 (12%)
Query: 38 ERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER 96
+R N S + ++ Q G L+ RD+ +T+ GF F+L D Q+W+I+ Y+ +++
Sbjct: 162 QRDVNLSKGVKQLLQAGHLVEIRDRRV-EITKDGFAFVLQDVGTQVWHILILYVESAEAI 220
Query: 97 GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156
G++ +++ F+ LS G +Y ++ Q + D AD G+V Q+ + F PT+
Sbjct: 221 GMDSVEVLKFVFFLSSLELGRSYEKKQMTSNQLRTLTDLADFGIV-YQESPEATHFYPTR 279
Query: 157 LATNLSMSLTDSSA-------------------RKEGFIVVETNFRMYAYSTSKLHCEIL 197
LAT L+ +DSSA GFI++ETN+R+YAY++S L ++
Sbjct: 280 LATTLT---SDSSALSNPIAGSLSGPTGTASNKAGSGFIIIETNYRLYAYTSSPLQISLI 336
Query: 198 RLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----ADRMPS-- 251
LF+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++ A R S
Sbjct: 337 ALFTTLKYRFPNLITGKITRQSIRRAVEMGITADQIISYLSTHAHPQMRKHNASRSTSNQ 396
Query: 252 -------VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE- 303
+P V DQIRLW+ + +RV+ TP + +F S +EA C YA + L+W+
Sbjct: 397 AGMPVSVLPPTVVDQIRLWQLERDRVKATPGFLFKDFVSLAEYEAPCRYAEEIGVLVWKS 456
Query: 304 DPKKMRLVVKAEIHMHMREFLRGQN 328
D K+M V + H + FLR +
Sbjct: 457 DRKRMFFVTR---HEQVAAFLRSRK 478
>gi|384484453|gb|EIE76633.1| hypothetical protein RO3G_01337 [Rhizopus delemar RA 99-880]
Length = 284
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 163/283 (57%), Gaps = 38/283 (13%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL D N Q+W + +Y+ + A+L S LEL GE Y+++TL
Sbjct: 12 QITNKGFQFLLQDVNTQVWAFLLQYL--------DMAELGS--LEL-----GENYSVDTL 56
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS-------------------- 164
++ Q M++D D G+V Q+ + + PT+LAT L+
Sbjct: 57 TQTQLQMLEDLRDYGIV-YQRKKHSKRYYPTRLATTLTSGKSALATVAGKYNHMMQETNI 115
Query: 165 --LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYN 222
TD+ + +GFI++ETN+++YAY+ S L +L LF +++ + N++ G IT++S+ N
Sbjct: 116 DDTTDTESVDQGFIILETNYKLYAYTDSPLQIAVLNLFVQLQSRFRNMVTGVITRDSIRN 175
Query: 223 AFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFP 282
A GITAEQII +LQ +AHP++ P +P V DQIRLWE + NR++ TP++ Y EF
Sbjct: 176 ALMKGITAEQIIYYLQSHAHPQMRKETPVLPLTVVDQIRLWEMERNRLKPTPSYLYHEFN 235
Query: 283 SRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+ F+AA YARD LLW + +K + + H +++ F++
Sbjct: 236 VQADFDAAEKYARDLGVLLWSNNQKRTMAITEAGHENVKGFVK 278
>gi|146414792|ref|XP_001483366.1| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 189/371 (50%), Gaps = 61/371 (16%)
Query: 7 GNQCLLVLLQGF--QPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSR---RDK 61
G++ + L F Q W T+ + E P+ S S++ + + G L D
Sbjct: 128 GHKVTVAFLDSFALQKWETILHYMVG------TELPSKPSPSVLSLLKLGGLMEGPGTDA 181
Query: 62 EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNL 121
++T SGFQFLL D NAQ+W ++ +Y++ +Q+ ++ D+++FL L G++Y L
Sbjct: 182 RNLKITNSGFQFLLQDMNAQIWTLLLQYLNLTQDLNMDPVDVLNFLFVLGSLELGKSYYL 241
Query: 122 NTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSLTDS--- 168
+ LS+ Q SM+ D D GLV Q + + F PT+LAT L SM+L +
Sbjct: 242 SGLSDTQVSMLADLRDYGLV-YQYSDQSDRFYPTRLATTLTSESASLKTPSMALDQAVDT 300
Query: 169 -----SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
S +G I++ETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA
Sbjct: 301 SNGLDSGPGQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNA 360
Query: 224 FENGITAEQIISFLQQNAHPRV-------------------------------ADRMPSV 252
NGIT++QII+FL+ +AHP++ ++ +
Sbjct: 361 LYNGITSDQIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEIL 420
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVV 312
P V DQI+LW+ +L+R++ + + EF S+ F+ C+YA D L+W D KMR V
Sbjct: 421 PPTVVDQIKLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTKMRFFV 480
Query: 313 KAEIHMHMREF 323
+ + +F
Sbjct: 481 TKDGISQVADF 491
>gi|325181847|emb|CCA16302.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 473
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 158/280 (56%), Gaps = 15/280 (5%)
Query: 60 DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERG-INQADLISFLLELSFHVAGEA 118
D+ A +T+ G++F+L D + Q+W + EYI G + Q D++ FL ++S+
Sbjct: 189 DQRALHITDKGYEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQISYCQVNAY 248
Query: 119 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEG---- 174
Y + L++ Q+ ++ DF + GL+ ++ + F T LA NL T +S E
Sbjct: 249 YPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDR-FYTTSLAINLIFGGTTTSNYSETQVAR 307
Query: 175 ---------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFE 225
+VETNF++YAY+TS LH +L +F + +LPNL +G IT+ESL +A
Sbjct: 308 PRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALV 367
Query: 226 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
+GI+A+QI FL ++AHPR+ P VPEN+ DQI LWE + NR++ +D F S++
Sbjct: 368 HGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFDGFNSKE 427
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
FE +YA+ Q L W DP ++L + + +R F++
Sbjct: 428 EFEQVREYAQKQRFLTWTDPIHLKLAISSNGIESVRNFIQ 467
>gi|320167307|gb|EFW44206.1| transcription factor tfb2 [Capsaspora owczarzaki ATCC 30864]
Length = 406
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 154/262 (58%), Gaps = 5/262 (1%)
Query: 64 PRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNT 123
P +T GFQFLL D Q+WY + +Y+++ Q+RG + + ++ L LSF G Y +
Sbjct: 115 PVITNKGFQFLLQDVATQVWYFLTQYLNSLQKRGADPVEALALLFRLSFSTVGMDYPVEG 174
Query: 124 LSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGFIVVETN 181
L+E Q +++ ++GLV ++ R F PT LA NL+ + +A +G+IVVETN
Sbjct: 175 LTEGQLDLLQHLREIGLV-FRRKRTSRRFYPTPLAINLASGSAKNLDAADVKGYIVVETN 233
Query: 182 FRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 241
FR+YAY+ S L +L LF + Y+ PN++ G ++++S+ A G+TAEQ+I FL+ +A
Sbjct: 234 FRIYAYTDSPLQLALLSLFVDLRYRFPNMVCGLLSRDSVRKALVKGLTAEQMIRFLRTHA 293
Query: 242 HPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
HP++ R P +PE + DQ+RLWE + NR+ + PA Y+ F ++ + Y RD L
Sbjct: 294 HPQMRSRTPVLPETISDQLRLWELERNRLRVLPAVLYERFSNQREHDLLHHYGRDLGVEL 353
Query: 302 WEDPKKMRLVVKAEIHMHMREF 323
+ +VV E H ++ F
Sbjct: 354 AHSSQH--IVVTFEGHEQIKTF 373
>gi|296422658|ref|XP_002840876.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637102|emb|CAZ85067.1| unnamed protein product [Tuber melanosporum]
Length = 460
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 159/280 (56%), Gaps = 17/280 (6%)
Query: 44 SSSMMKVFQRGLLSRR--DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S ++ + +G L R + +T++GF FLL D N Q+W ++ +Y+ S+E G+ Q
Sbjct: 153 SKGVITLLTKGGLMERYGAGSSATITKNGFSFLLQDGNPQIWALLIQYLEMSEELGMEQT 212
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL 161
D++ FLL L G+AY++NTL+E QK M+ D D G+V Q+ + F PT+LAT L
Sbjct: 213 DVLHFLLMLGSLELGQAYSVNTLTETQKLMLADLRDYGIV-YQRKSSSDRFYPTRLATTL 271
Query: 162 S--------------MSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 207
+ ++ + +GFI++ETN+R+YAY+ S L +L LF K+ +
Sbjct: 272 TSESGGLRSASASMSSAMAKDAEEGKGFIILETNYRVYAYTDSPLQIAVLNLFVKLSTRY 331
Query: 208 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDL 267
PNL+ G I++ S+ A + GITA+Q+I +L +AHP++ + ++P V DQIRLW+ +
Sbjct: 332 PNLVSGRISRRSIQEAIKMGITADQVIDYLSAHAHPQMRKSLVTLPPTVVDQIRLWQIEG 391
Query: 268 NRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKK 307
R+ T + +F S FE YA + L W+ P +
Sbjct: 392 ERMRTTTGFLFKDFHSTQEFEEVAKYAEELGVLKWKKPAR 431
>gi|255079788|ref|XP_002503474.1| predicted protein [Micromonas sp. RCC299]
gi|226518741|gb|ACO64732.1| predicted protein [Micromonas sp. RCC299]
Length = 458
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 156/264 (59%), Gaps = 9/264 (3%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYI---SNSQERGINQADLISFLLELSFHVAGEAYNLN 122
+TE GF+FLL Q+W ++ EY+ S +R + +I F+L L+F G+ Y ++
Sbjct: 195 ITEKGFRFLLSTAREQIWTLLTEYVRQYSAPGDRTLVAPAVIGFMLRLTFQAVGQPYRVD 254
Query: 123 TLSEIQKSMIKDFADLGLVKLQQG-RKENWFIPTKLATNLSMSLTDSSARKE--GFIVVE 179
L Q+++ +D A LGL+ L G KE +++PT+L ++ D+S + G I+ E
Sbjct: 255 DLPSAQRAIAEDLAHLGLLYLFAGPGKEGYYVPTQLTAGKDVADGDASLGGDPGGHIIAE 314
Query: 180 TNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 239
TNFR+YAY+ S + CEILRLF++ +Y+LPNL VG +T+E+++ A + G+ AEQII +++
Sbjct: 315 TNFRVYAYTFSDVECEILRLFTRPDYRLPNLYVGMLTREAVHEALDTGVAAEQIIKYIKS 374
Query: 240 NAHP--RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPS-RDVFEAACDYARD 296
+AHP R +P NV DQI LW + RV Y +FP+ D + AA A D
Sbjct: 375 HAHPNARKTTNGSGIPPNVADQIMLWAMERRRVRSAECVLYCDFPTGTDEYAAAVKAASD 434
Query: 297 QSGLLWEDPKKMRLVVKAEIHMHM 320
LLWE+ ++M+L V H M
Sbjct: 435 AGVLLWENREQMKLAVAKSGHERM 458
>gi|281208616|gb|EFA82792.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 458
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 168/281 (59%), Gaps = 14/281 (4%)
Query: 56 LSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVA 115
L++ + + +T GF+FLL D Q+W ++ Y+++ + RG ++ D ++FL +LSF
Sbjct: 177 LTKLNDGSMVITSEGFKFLLKDIYTQIWTLIIVYLNSLETRGKSRRDALAFLFKLSFLSL 236
Query: 116 GEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT--------- 166
G AY +N L+E +KS++ D GLV ++ + E F PT+L +L+ T
Sbjct: 237 GSAYYVNDLTEDEKSLLFDLRQFGLVYIRSEKSE-IFYPTRLIISLTTGKTVTVIKDLAK 295
Query: 167 --DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 224
++ +++G+I++ETNFR+YAY+ S L +L LF K+ Y+LPNL VG +T+ES+ AF
Sbjct: 296 EMSNTQKEQGYIILETNFRIYAYTASSLQISLLSLFVKMLYRLPNLSVGILTRESIRTAF 355
Query: 225 ENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 284
+GITA+QI+ F++QN HP + PE V +QIR+WE++ NR+ A +D FP++
Sbjct: 356 LHGITADQIVDFIKQNGHPNMLK--VGAPEIVFEQIRIWENERNRILYKKAVLFDSFPTQ 413
Query: 285 DVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+ F YA+D S +W K LVV ++ ++R
Sbjct: 414 ESFNMTLQYAKDLSFYMWASEAKKVLVVSDNGFDAIKNYIR 454
>gi|325181222|emb|CCA15636.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 1033
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 158/280 (56%), Gaps = 15/280 (5%)
Query: 60 DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERG-INQADLISFLLELSFHVAGEA 118
D+ A +T+ G++F+L D + Q+W + EYI G + Q D++ FL ++S+
Sbjct: 236 DQRALHITDKGYEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQISYCQVNAY 295
Query: 119 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEG---- 174
Y + L++ Q+ ++ DF + GL+ ++ + F T LA NL T +S E
Sbjct: 296 YPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDR-FYTTSLAINLIFGGTTTSNYSETQVAR 354
Query: 175 ---------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFE 225
+VETNF++YAY+TS LH +L +F + +LPNL +G IT+ESL +A
Sbjct: 355 PRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALV 414
Query: 226 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
+GI+A+QI FL ++AHPR+ P VPEN+ DQI LWE + NR++ +D F S++
Sbjct: 415 HGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFDGFNSKE 474
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
FE +YA+ Q L W DP ++L + + +R F++
Sbjct: 475 EFEQVREYAQKQRFLTWTDPIHLKLAISSNGIESVRNFIQ 514
>gi|302684027|ref|XP_003031694.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
gi|300105387|gb|EFI96791.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
Length = 476
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 179/330 (54%), Gaps = 32/330 (9%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
W T+ + +G+ ++ +P + ++K + GL+ R R+T +GFQFLL+ +A
Sbjct: 146 WETILHFMVSSGTGQESAQPAAGVTYLLK--ESGLMESRGGTL-RITSAGFQFLLLTPHA 202
Query: 81 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEA------------YNLNTLSEIQ 128
QLW ++ Y+ + I+ +++SFL +S G+ Y+ LS Q
Sbjct: 203 QLWELLIHYLRLQEANNIDLVEVLSFLFMVSTTEFGQGNLEMLTGDLHQEYSTENLSTSQ 262
Query: 129 KSMIKDFADLGLVKLQQGRKENW--FIPTKLATNLSMSLTD-------SSARKEGFIVVE 179
++ D GL+ RK+N+ F PT+LAT L+ S +S KEGFIV+E
Sbjct: 263 LVVMDDLRHYGLL---WQRKKNYPRFSPTRLATTLTSSAPPLPTSSGPTSGPKEGFIVLE 319
Query: 180 TNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 239
TN+R+YAY+ + L +L LF +Y+ PNL+VG+IT+ES+ A NGITA+QIIS+L
Sbjct: 320 TNYRVYAYTDNALQTAVLNLFITPKYRFPNLVVGSITRESVKRAMSNGITADQIISYLIT 379
Query: 240 NAHPRVADRM-----PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 294
+AHP++ + P +P V DQIRLWE + NR + Y EF S+ +E +YA
Sbjct: 380 HAHPQMHKNVCLVANPLLPVTVQDQIRLWELERNRTKSQEGFLYTEFASQADYEYVLNYA 439
Query: 295 RDQSGLLWEDPKKMRLVVKAEIHMHMREFL 324
+ +LWE+ K E H +++ F+
Sbjct: 440 KQLGVVLWENHAKRCFFAAQEGHANIKSFI 469
>gi|396459783|ref|XP_003834504.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
gi|312211053|emb|CBX91139.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
Length = 483
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 155/273 (56%), Gaps = 20/273 (7%)
Query: 49 KVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLL 108
K+ G L R PR+T+ GF F+L +TNAQ+W ++ Y+ E G+++ +++SFL
Sbjct: 180 KLLMEGDLVRVIHGTPRITKDGFSFVLQETNAQVWSLLIVYLKMVHELGMSETEVLSFLF 239
Query: 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS------ 162
L G Y+++TLS+ Q M+ D + +GLV + + F PT+LAT L+
Sbjct: 240 MLGSLDLGRDYSISTLSDTQLQMLDDLSAMGLV-YRTSKDARTFYPTRLATTLTSDSGSA 298
Query: 163 MSLTDS-------------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
MS + + + +GFI++ETN+R+YAY+ S + IL LF+K++++ PN
Sbjct: 299 MSASSNDIAQANQGNAGTLATANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPN 358
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNR 269
L+ G +TKES++ A GIT+ QIIS+L AHP++ + +P V DQIRLWE + R
Sbjct: 359 LVSGKLTKESVHKAVSAGITSAQIISYLSTYAHPQMQKNVSFIPPTVMDQIRLWEYEGER 418
Query: 270 VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW 302
VE+TP +F S + YA L+W
Sbjct: 419 VEVTPGFLMKDFGSDAEYRDVLGYADALGVLVW 451
>gi|193633122|ref|XP_001945987.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 471
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 164/289 (56%), Gaps = 6/289 (2%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S ++ + GL+ R ++P +T +GFQFLL+D Q+WY + Y+ + RG++ A
Sbjct: 182 SDAVRVLLNAGLMVRDTDDSPVITSTGFQFLLLDMATQVWYFMLRYMETVESRGLDLAQC 241
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM 163
++FL ++ G Y + +SE ++ ++ + GLV Q+ RK F PT+L +
Sbjct: 242 LTFLFQIHLGTLGWDYITDEMSENLQAFLQHLREFGLV-YQRKRKAGRFYPTRLVIEMGQ 300
Query: 164 SLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
+ +S R KE +IVVETNFR+YA + S L ++ LF+ + Y+ PN+ G +T++S+
Sbjct: 301 GNSRTSERMKNKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYRFPNMSAGILTRDSV 360
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
A +GITA QI+ FL + HP++ + +P+ V DQI LWE++ NR+ T Y
Sbjct: 361 RTALRSGITAAQIVRFLTVHTHPQMQE--CGMPQTVIDQIYLWENERNRLTYTDGVLYSN 418
Query: 281 FPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ + +E +YA D L+W D ++ +VV + H +R+F + Q K
Sbjct: 419 INTPNDYETIKNYAADIGALVWCDERRRNIVVSTDGHDDVRKFWKKQPK 467
>gi|198428509|ref|XP_002131018.1| PREDICTED: similar to General transcription factor II H,
polypeptide 4 [Ciona intestinalis]
Length = 463
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 172/301 (57%), Gaps = 10/301 (3%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKEAPR----LTESGFQFLLMDTNAQLWYIVREYISN 92
+E + S + + + L ++ E R +T GFQFLL+D +Q+WY V EY+
Sbjct: 161 SETNSTISQDIKDLINQAGLMKQGSEGGRSYSIITAKGFQFLLLDNASQVWYFVLEYLDW 220
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
+ERG+N ++ F+ ELSF G+ + + ++ F ++GLV +Q+ RK F
Sbjct: 221 VRERGMNLVPILRFIFELSFSSPGKDLPTDGRDDHVLICLQHFREMGLV-MQRKRKSRRF 279
Query: 153 IPTKLATNLS----MSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
PT LA NL+ S+T+ + + GFI+ ETNFR+YAY+ S+L IL LF K+ Y+ P
Sbjct: 280 YPTYLAINLANRANASVTNVTNSR-GFILAETNFRVYAYTDSELQYSILSLFCKMLYRFP 338
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLN 268
N+ V +T++S+ +A NGITA+QI+ +++ NAHP + P + + DQ+RLW + +
Sbjct: 339 NVCVLQLTRKSIQSAVVNGITADQILHYIKANAHPDMLKNDPIIAPTLADQVRLWAMERD 398
Query: 269 RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
R+ Y++F ++ FE +YA++ L+WE+ K +VV + H ++ + +
Sbjct: 399 RLTYRDGVLYNQFLAQKDFEVLRNYAKELGALIWENSSKRYMVVTKDGHDQVKRYWKKYK 458
Query: 329 K 329
K
Sbjct: 459 K 459
>gi|301098671|ref|XP_002898428.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262105199|gb|EEY63251.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 483
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 174/332 (52%), Gaps = 41/332 (12%)
Query: 32 GSSTQAERPTNFSSSMMKVFQRGLL---SRRDKEAPRLTESGFQFLLMDTNAQLWYIVRE 88
GS+ E P S++ + R L S D A +T++G++F+L D + Q+W + E
Sbjct: 152 GSTAVQEPP----QSVVDILLRTKLLQASGADSRALHITDTGYEFMLKDIHVQMWIFMLE 207
Query: 89 YISNSQERG-INQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGR 147
YI G + Q D++ FL ++S+ G Y + L+E Q+ ++ DF D GL+ ++ +
Sbjct: 208 YIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLL-FRKRQ 266
Query: 148 KENWFIPTKLATNL-----------SMSLTDSSARKEG---------------------F 175
+ F T LA NL +SLT S A
Sbjct: 267 NSDRFYTTSLAVNLIFGGSTGQKRSHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGARLL 326
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
+VVETNF++YAY++S LH +L +F + +LPNL +G IT+ESL +A +GI+A+QI
Sbjct: 327 VVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYD 386
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYAR 295
FL ++AHP++ P +PEN+ DQI LWE + NRV+ +D F +++ +E+ DYA+
Sbjct: 387 FLMKHAHPKMRRNSPVIPENIADQIYLWERERNRVQFLEGILFDGFNTKEDYESVRDYAK 446
Query: 296 DQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
L W DP RL + +R F++ Q
Sbjct: 447 GLMVLTWSDPIHFRLSIATAGIDEVRHFIQNQ 478
>gi|261187837|ref|XP_002620336.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239593453|gb|EEQ76034.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239608433|gb|EEQ85420.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis ER-3]
gi|327356043|gb|EGE84900.1| RNA pol II transcription initiation subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 485
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 166/305 (54%), Gaps = 35/305 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N+++ G++ +++SFL LS
Sbjct: 180 LVEIRDRRV-EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSVEVLSFLFVLSSLE 238
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE-NWFIPTKLATNL-----------S 162
G++Y L+ Q + D D G+V +E F PT+LAT L S
Sbjct: 239 LGQSYEKKHLTSTQLKTLADLTDFGIVYQHPPHQEATRFYPTRLATTLTSDSITLGSSIS 298
Query: 163 MSLTDSSARKE--------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
SLT S GFI++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 299 SSLTAPSGGPAAVSNEPGTGFIIIETNYRLYAYTSSPLQISLISLFTTLKYRFPNLITGK 358
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRV-----------ADRMPSV-PENVCDQIRL 262
+T++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRL
Sbjct: 359 LTRQSIRRAVEMGITADQIISYLTTHAHPQMRKYHASKSGANPAGVPAVLPPTVVDQIRL 418
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMRE 322
W+ + +R++ TP + +F S FE C YA + LLW+ K+ V H +
Sbjct: 419 WQLERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLLWKSEKRRMFFVTR--HEQVAA 476
Query: 323 FLRGQ 327
+LR +
Sbjct: 477 YLRSR 481
>gi|358370616|dbj|GAA87227.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 36/328 (10%)
Query: 32 GSSTQAERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
G+ S + ++ Q G L+ RD+ +T+ GF F+L D + Q+W+I+ Y+
Sbjct: 156 GTGGMGAPQVTLSKGVKELLQAGHLVEIRDRRV-EITQDGFAFVLQDVSTQVWHILILYV 214
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
++ ++ +++SF+ LS G++Y N LS Q M+ D AD G+V Q+
Sbjct: 215 ESASAIKMDSVEVLSFVFLLSSLELGKSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAP 273
Query: 151 WFIPTKLATNL---SMSLTD-------------SSARKEGFIVVETNFRMYAYSTSKLHC 194
F PT+LAT L S +L++ SS GFI++ETN+R+YAY++S L
Sbjct: 274 RFYPTRLATTLTSDSSALSNPLLGSLSGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQI 333
Query: 195 EILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--------- 245
++ LF+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++
Sbjct: 334 SLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRST 393
Query: 246 ---ADRMPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
A PSV P V DQIRLW+ + +RV+ T + +F S +EA C YA + L
Sbjct: 394 SNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLA 453
Query: 302 WE-DPKKMRLVVKAEIHMHMREFLRGQN 328
W+ D K+M V + H + FLR +
Sbjct: 454 WKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|353240543|emb|CCA72408.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Piriformospora indica DSM 11827]
Length = 462
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 169/315 (53%), Gaps = 15/315 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNA 80
W T+ + +G+ + RP S ++ + + L + +T +GFQFLL +A
Sbjct: 146 WDTILHFMVTSGTEQASARP---SEGVLYLLEHSGLMSNEHGRRIITSAGFQFLLQSPHA 202
Query: 81 QLWYIVREYISNSQER-GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLG 139
QLW + Y+ ER ++ D++ F LS G+ Y+ +TLS Q M+ D D G
Sbjct: 203 QLWEFILSYLRMMAEREDMDMVDILGFFFMLSMTQPGQHYSTHTLSPTQLIMVSDLRDFG 262
Query: 140 LVKLQQGRKENWFIPTKLATNLS----------MSLTDSSARKEGFIVVETNFRMYAYST 189
LV + F PT+ AT L+ +++ + + + F+V+ETN+ +YAY+
Sbjct: 263 LVYFPSDTTTS-FQPTRFATTLTSYTSSFSDHDLTIENGADLSQEFVVLETNYHVYAYTN 321
Query: 190 SKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM 249
+ L +L LF + + PN+I+G++T++S+ A NGITA+QI+S+L +AHP++
Sbjct: 322 NPLQIAVLNLFVSFKARFPNMIMGSLTRDSVKKALVNGITADQILSYLVTHAHPQMRKNN 381
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
P +P V DQIRLWE + +RV+ + Y EF S + +E YAR+ +LWE+ +
Sbjct: 382 PIIPVTVQDQIRLWELERHRVKGQDGYLYKEFASMNDYEVVVQYARELGVVLWENASRRM 441
Query: 310 LVVKAEIHMHMREFL 324
A +H+R ++
Sbjct: 442 FFADAAGRVHIRSYI 456
>gi|350639203|gb|EHA27557.1| transcription factor Tfb2 [Aspergillus niger ATCC 1015]
Length = 478
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 36/328 (10%)
Query: 32 GSSTQAERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
G+ S + ++ Q G L+ RD+ +T+ GF F+L D + Q+W+I+ Y+
Sbjct: 156 GTGGMGGPQVTLSKGVKELLQAGHLVEIRDRRV-EITQDGFAFVLQDVSTQVWHILILYV 214
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
++ ++ +++SF+ LS G++Y N LS Q M+ D AD G+V Q+
Sbjct: 215 ESASAIKMDSVEVLSFVFLLSSLELGKSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAP 273
Query: 151 WFIPTKLATNL---SMSLTD-------------SSARKEGFIVVETNFRMYAYSTSKLHC 194
F PT+LAT L S +L++ SS GFI++ETN+R+YAY++S L
Sbjct: 274 RFYPTRLATTLTSDSSALSNPLLGSLSGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQI 333
Query: 195 EILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--------- 245
++ LF+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++
Sbjct: 334 SLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRST 393
Query: 246 ---ADRMPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
A PSV P V DQIRLW+ + +RV+ T + +F S +EA C YA + L
Sbjct: 394 SNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLA 453
Query: 302 WE-DPKKMRLVVKAEIHMHMREFLRGQN 328
W+ D K+M V + H + FLR +
Sbjct: 454 WKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|145248676|ref|XP_001400677.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus niger CBS 513.88]
gi|134081344|emb|CAK41847.1| unnamed protein product [Aspergillus niger]
Length = 478
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 36/328 (10%)
Query: 32 GSSTQAERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
G+ S + ++ Q G L+ RD+ +T+ GF F+L D + Q+W+I+ Y+
Sbjct: 156 GTGGMGGPQVTLSKGVKELLQAGHLVEIRDRRV-EITQDGFAFVLQDVSTQVWHILILYV 214
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
++ ++ +++SF+ LS G++Y N LS Q M+ D AD G+V Q+
Sbjct: 215 ESASAIKMDSVEVLSFVFLLSSLELGKSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAP 273
Query: 151 WFIPTKLATNL---SMSLTD-------------SSARKEGFIVVETNFRMYAYSTSKLHC 194
F PT+LAT L S +L++ SS GFI++ETN+R+YAY++S L
Sbjct: 274 RFYPTRLATTLTSDSSALSNPLLGSLSGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQI 333
Query: 195 EILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--------- 245
++ LF+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++
Sbjct: 334 SLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRST 393
Query: 246 ---ADRMPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
A PSV P V DQIRLW+ + +RV+ T + +F S +EA C YA + L
Sbjct: 394 SNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLA 453
Query: 302 WE-DPKKMRLVVKAEIHMHMREFLRGQN 328
W+ D K+M V + H + FLR +
Sbjct: 454 WKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|119486893|ref|XP_001262366.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
gi|119410523|gb|EAW20469.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
Length = 468
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 176/323 (54%), Gaps = 36/323 (11%)
Query: 38 ERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER 96
+R + S + ++ Q G L+ RD+ +T+ GF F+L D Q+W+I+ Y+ ++
Sbjct: 151 QRDVSLSKGVKELLQAGHLVEIRDRRV-EITQDGFAFVLQDVGTQVWHILVLYVESAAAI 209
Query: 97 GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156
G++ +++SF+ LS G++Y L+ Q + D AD G+V Q+ F PT+
Sbjct: 210 GMDSVEVLSFVFFLSSLELGKSYEKKQLTSNQLRTLTDLADFGIV-YQETPDATHFYPTR 268
Query: 157 LATNLSM----------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 200
LAT L+ + T SS GFI++ETN+R+YAY++S L ++ LF
Sbjct: 269 LATTLTSDSSTLSNPLAGSLSGPTGTSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALF 328
Query: 201 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR-----------M 249
+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++ M
Sbjct: 329 TTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGM 388
Query: 250 P--SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPK 306
P +P V DQIRLW+ + +RV+ T + +F + +EA C YA + L+W+ D K
Sbjct: 389 PVSVLPPTVVDQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRK 448
Query: 307 KMRLVVKAEIHMHMREFLRGQNK 329
+M V + H + FL+ + K
Sbjct: 449 RMFFVTR---HHQVAAFLKSRRK 468
>gi|115388809|ref|XP_001211910.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195994|gb|EAU37694.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 460
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 176/322 (54%), Gaps = 36/322 (11%)
Query: 38 ERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER 96
+R S + ++ Q G L+ RD+ +T+ GF F+L D + Q+W+I+ Y+ +++
Sbjct: 144 QRDVTLSKGVKQLLQAGHLVEIRDRRV-EITQDGFAFVLQDVSTQVWHILILYVESAEAI 202
Query: 97 GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156
G++ +++SF+ LS G++Y L+ Q + D AD G+V Q F PT+
Sbjct: 203 GMDSVEVLSFVFLLSSLELGKSYEKQHLTSNQLRTLTDLADFGIV-YQHSPDATHFYPTR 261
Query: 157 LATNL-----------SMSL-----TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 200
LAT L S SL T S+ GFI+VETN+R+YAY++S L ++ LF
Sbjct: 262 LATTLTSDASSLSNPISGSLSGPDGTSSAKAGSGFIIVETNYRLYAYTSSPLQISLIALF 321
Query: 201 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------ADR 248
+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++ A
Sbjct: 322 TTLKYRFPNLITGKITRQSVRRAIEMGITADQIISYLATHAHPQMRKHNVSRSTSNQAGI 381
Query: 249 MPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPK 306
PSV P V DQIRLW+ + +RV+ T + +F S +E C YA + L+W+ + K
Sbjct: 382 PPSVLPPTVVDQIRLWQLERDRVKATAGFLFKDFASLAEYEDPCRYAEEIGVLVWKSNRK 441
Query: 307 KMRLVVKAEIHMHMREFLRGQN 328
+M V + H + FLR +
Sbjct: 442 RMFFVTR---HEQVAAFLRSRK 460
>gi|260945437|ref|XP_002617016.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
gi|238848870|gb|EEQ38334.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
Length = 511
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 179/353 (50%), Gaps = 67/353 (18%)
Query: 37 AERPTNFSSSMMKVFQRGLLSRRDKEAP---RLTESGFQFLLMDTNAQLWYIVREYISNS 93
E PT S S++ + + G L + ++T SGFQFLL D N Q+W ++ EY++ +
Sbjct: 154 TELPTVPSKSVLSLLKSGGLMEGHGTSAYSLKITNSGFQFLLQDVNVQIWTLLLEYLNLT 213
Query: 94 QERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFI 153
QE ++ D+++F+ L G+AY +++LS+ Q SM+ D D GLV Q+ F
Sbjct: 214 QELNMDPVDVLNFIFILGSLELGKAYAVSSLSDTQLSMLPDLRDYGLV-YQRSENSTRFF 272
Query: 154 PTKLATNLS--------------MSLTDSSARKE------------GFIVVETNFRMYAY 187
PT+LAT L+ +L D A+ + G I++ETNF++YAY
Sbjct: 273 PTRLATTLTSESTGLKTPSMALNQTLEDPGAKDQEHVTSEAGESQSGQIILETNFKLYAY 332
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-- 245
+ S L IL LF ++ + N+++G IT+ES+ A NGITA+QII FL+ +AH ++
Sbjct: 333 TNSPLEIAILNLFVNLKVRFANMVIGQITRESIRKALYNGITADQIIKFLETHAHSQMRT 392
Query: 246 -----------------------------------ADRMPSVPENVCDQIRLWESDLNRV 270
R+ +P NV DQI+LW+ +L+R+
Sbjct: 393 SAKEKLDKKIEFDASHNINTAGGAPQSKSSDSGVAQHRLEILPPNVVDQIKLWQLELDRI 452
Query: 271 EMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
+ + + +F +++ ++ C+YA + LLW D K+R V AE + +F
Sbjct: 453 QTFEGYLFKDFKNQNEYDVLCNYATEVGVLLWSDKTKLRFFVTAEGMHQVADF 505
>gi|407927340|gb|EKG20235.1| Transcription factor Tfb2 [Macrophomina phaseolina MS6]
Length = 466
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 161/281 (57%), Gaps = 19/281 (6%)
Query: 64 PRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNT 123
P +T+ GF FLL + NAQ+W ++ Y+ NS ++ D++SFL L G+ Y+ ++
Sbjct: 188 PSITQGGFSFLLQEVNAQVWSLLIVYLENSHRLNMDNVDVLSFLFMLGSLELGQDYSTDS 247
Query: 124 LSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL-------------SMSLTDSSA 170
L+ Q+ M+ D D G+V + K N F PT+LAT L S +L +SA
Sbjct: 248 LTATQQHMLDDLNDFGIV-YRSPPKSNRFYPTRLATTLTSDAAALNNSDSFSSALNSTSA 306
Query: 171 R-KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGIT 229
+G+I++ETN+R+YAY++S L +L LF+ +E + PNL+ G +TKES+ A GIT
Sbjct: 307 SGSKGYIIIETNYRLYAYTSSPLQIAVLALFTDLETRFPNLVSGKLTKESVQRAIGLGIT 366
Query: 230 AEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 289
A+QIIS+L AHP++ + P +P V DQIRLW+ + +R+ T + +F D ++
Sbjct: 367 ADQIISYLDTYAHPQMQRKTPVLPPTVVDQIRLWQIEGDRMRATEGFLFKDFRDWDEYQD 426
Query: 290 ACDYARDQSGLLWE-DPKKMRLVVKAEIHMHMREFLRGQNK 329
YA L+W D +++ + + E + ++++ + K
Sbjct: 427 LKKYADSIGVLVWSNDQRRLMFLTRVE---QISQYIKNRTK 464
>gi|325089533|gb|EGC42843.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H88]
Length = 485
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 168/305 (55%), Gaps = 35/305 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N+++ G++ +++SFL LS
Sbjct: 180 LVEVRDRRV-EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLE 238
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE-NWFIPTKLATNLSM---------- 163
G++Y L+ Q + D D G+V +E F PT+LAT L+
Sbjct: 239 LGQSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSIS 298
Query: 164 ------SLTDSSARKE---GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
+L S++ E GFI++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 299 SSLTAPNLVPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGK 358
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRVADR-----------MPSV-PENVCDQIRL 262
+T++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRL
Sbjct: 359 LTRQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRL 418
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMRE 322
W+ + +R++ TP + +F S FE C YA + L+W+ +K V H +
Sbjct: 419 WQLERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVAT 476
Query: 323 FLRGQ 327
+LR +
Sbjct: 477 YLRSK 481
>gi|444727354|gb|ELW67853.1| Valyl-tRNA synthetase, mitochondrial [Tupaia chinensis]
Length = 1382
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 160/279 (57%), Gaps = 34/279 (12%)
Query: 72 QFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEA------------- 118
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 129 QFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKRRGERGRVHTVMDL 188
Query: 119 ------------------YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATN 160
Y++ +S+ + ++ + GLV Q+ RK + PT+LA N
Sbjct: 189 VEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAIN 247
Query: 161 LSMSLTDS--SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKE 218
LS ++ + +A + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+E
Sbjct: 248 LSSGVSGAGGTAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRE 307
Query: 219 SLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYY 278
S+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y
Sbjct: 308 SVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLY 367
Query: 279 DEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIH 317
++F S+ FE +AR+ L++E+ K +VV H
Sbjct: 368 NQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGH 406
>gi|406862938|gb|EKD15987.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 421
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 169/292 (57%), Gaps = 23/292 (7%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L++ + +T++GF FLL + NAQ+W ++ +I N+++ + +++SFL L
Sbjct: 127 LVTTGRRSGGGITQAGFSFLLQEVNAQVWALLLLWIENAEKMELESVEVLSFLFMLGSLE 186
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD------- 167
G++Y+ TLS Q++M+K D GLV + +F PT+L+T L+ +
Sbjct: 187 LGKSYSTATLSASQRAMLKYLVDFGLVYSPSSTPQQFF-PTRLSTTLTSDASGLRSVSAG 245
Query: 168 ------SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLY 221
S + +GFI++ETN+R+YAY+ S L +L LF+K+ + PN++ G +T++S+
Sbjct: 246 FDDALKSESGTKGFIIIETNYRLYAYTNSPLQIAVLALFTKMGVRYPNMVTGRVTRKSVA 305
Query: 222 NAFENGITAEQIISFLQQNAHPRVADRM-----PSVPENVCDQIRLWESDLNRVEMTPAH 276
NA +GIT++QIIS+L+ +AHP++ P +P V DQIRLW+ + R++ T
Sbjct: 306 NAISHGITSDQIISYLRAHAHPQLVKAAAVNGNPVLPPTVVDQIRLWQIENERMKATAGF 365
Query: 277 YYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHMHMREFLRGQ 327
+ EF ++ +E YA + L+W+ D K+M V + H +R++L+ +
Sbjct: 366 LFKEFETQKEYEGCARYADENGVLVWKNDAKRMFFVTR---HEQLRDYLKSR 414
>gi|70982185|ref|XP_746621.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2) [Aspergillus fumigatus Af293]
gi|66844244|gb|EAL84583.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus Af293]
gi|159122143|gb|EDP47265.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus A1163]
Length = 479
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 175/323 (54%), Gaps = 36/323 (11%)
Query: 38 ERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER 96
+R + S + ++ Q G L+ RD+ +T+ GF F L D Q+W+I+ Y+ ++
Sbjct: 162 QRDVSLSKGVKELLQAGHLVEIRDRRV-EITQDGFAFALQDVGTQVWHILVLYVESAAAI 220
Query: 97 GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156
G++ +++SF+ LS G++Y L+ Q + D AD G+V Q+ F PT+
Sbjct: 221 GMDSVEVLSFVFFLSSLELGKSYEKKQLTSNQLRTLTDLADFGIV-YQETPDATHFYPTR 279
Query: 157 LATNLSM----------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 200
LAT L+ + T SS GFI++ETN+R+YAY++S L ++ LF
Sbjct: 280 LATTLTSDSSTLSNPLAGSLSGPTGTSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALF 339
Query: 201 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR-----------M 249
+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++ M
Sbjct: 340 TTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGM 399
Query: 250 P--SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPK 306
P +P V DQIRLW+ + +RV+ T + +F + +EA C YA + L+W+ D K
Sbjct: 400 PVSVLPPTVVDQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRK 459
Query: 307 KMRLVVKAEIHMHMREFLRGQNK 329
+M V + H + FL+ + K
Sbjct: 460 RMFFVTR---HHQVAAFLKSRRK 479
>gi|240279262|gb|EER42767.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H143]
Length = 485
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 168/305 (55%), Gaps = 35/305 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N+++ G++ +++SFL LS
Sbjct: 180 LVEVRDRRV-EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLE 238
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE-NWFIPTKLATNLSM---------- 163
G++Y L+ Q + D D G+V +E F PT+LAT L+
Sbjct: 239 LGQSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSIS 298
Query: 164 ------SLTDSSARKE---GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
+L S++ E GFI++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 299 SSLTAPNLVPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGK 358
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRVADR-----------MPSV-PENVCDQIRL 262
+T++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRL
Sbjct: 359 LTRQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRL 418
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMRE 322
W+ + +R++ TP + +F S FE C YA + L+W+ +K V H +
Sbjct: 419 WQLERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVAA 476
Query: 323 FLRGQ 327
+LR +
Sbjct: 477 YLRSK 481
>gi|225555033|gb|EEH03326.1| RNA pol II transcription initiation subunit [Ajellomyces capsulatus
G186AR]
Length = 485
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 35/305 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N+++ G++ +++SFL LS
Sbjct: 180 LVEVRDRRV-EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLE 238
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE-NWFIPTKLATNL-----------S 162
G++Y L+ Q + D D G+V +E F PT+LAT L S
Sbjct: 239 LGQSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSIS 298
Query: 163 MSLT--------DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
SLT S+ GFI++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 299 SSLTAPNGVPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGK 358
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRVADR-----------MPSV-PENVCDQIRL 262
+T++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRL
Sbjct: 359 LTRQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKAGANPVGVPTVLPPTVVDQIRL 418
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMRE 322
W+ + +R++ TP + +F + FE C YA + L+W+ +K V H +
Sbjct: 419 WQLERDRIKATPGFLFKDFVNLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVAA 476
Query: 323 FLRGQ 327
+LR +
Sbjct: 477 YLRSR 481
>gi|440636738|gb|ELR06657.1| hypothetical protein GMDG_00274 [Geomyces destructans 20631-21]
Length = 470
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 170/304 (55%), Gaps = 24/304 (7%)
Query: 44 SSSMMKVFQRGLL--SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S+++ ++ Q G L S+ +T++GF FLL + NAQ+W ++ ++ +++E ++
Sbjct: 170 SANVRQLLQMGTLVDSKGKYSGVGITQAGFSFLLQEANAQVWTVLLLWLEHAEELAMDHV 229
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL 161
DL+SF L G AY+ TLS QKSM+ AD GLV PT+LAT L
Sbjct: 230 DLLSFFFLLGSLELGLAYSTTTLSTTQKSMLPILADFGLVYSPPSSSSF--FPTRLATTL 287
Query: 162 SMSLT----------------DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
+ S + SS GFIV+ETN+R+YAY++S L +L LF+K+
Sbjct: 288 TSSASALRSIASGFSAAAASPASSGGTTGFIVIETNYRLYAYTSSPLQIAVLALFAKLST 347
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWES 265
+ PN++ G +T++S+ A E+GITA+QIIS+L +AHP++ + P +P V DQIRLW+
Sbjct: 348 RYPNMVSGRVTRDSVRGAIEHGITADQIISYLTTHAHPQLRRKSPVLPPTVVDQIRLWQI 407
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMREFL 324
+ R++ T + +F S +E YA + L+W D K+ V K H +R+++
Sbjct: 408 ENERMKATAGFLFKDFASLAEYEGCVRYADEIGVLVWRSDAKRNFFVTK---HEQLRDYI 464
Query: 325 RGQN 328
+ +
Sbjct: 465 KSRK 468
>gi|242794214|ref|XP_002482325.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
gi|218718913|gb|EED18333.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
Length = 481
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 32/316 (10%)
Query: 32 GSSTQAERPT-NFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
G+S R T + S + ++ Q G L +T+ GF F+L D N Q+W I+ Y+
Sbjct: 155 GTSGPGVRETVSLSRGVKQLLQAGHLVEIHHGRVDITQDGFAFVLQDVNTQVWQIIILYV 214
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKE 149
+++ +N +++SF+ LS G++Y L+ Q + D D G+V + +
Sbjct: 215 ESAKALQVNDVEVLSFIFLLSSLELGQSYEKKHLTPDQLRALTDLTDFGIVYQYPSAAEA 274
Query: 150 NWFIPTKLATNLS-----MSLTDSSARK-----------EGFIVVETNFRMYAYSTSKLH 193
+ F PT+LAT L+ +S T SSA GFI++ETN+R+YAY++S L
Sbjct: 275 DRFYPTRLATTLTSDSSALSNTMSSALSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQ 334
Query: 194 CEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP--RVADRMPS 251
++ LF+ ++Y+ PNL+ G IT++S+ A E GITA+QIIS+L +AHP R D + S
Sbjct: 335 ISLIALFTTLKYRFPNLVTGKITRQSIRRAVEMGITADQIISYLSTHAHPQMRKEDAVKS 394
Query: 252 -----------VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+P V DQIRLW+ + +R++ TP + EF S +E C YA + L
Sbjct: 395 TSNTAGLPRSVLPPTVVDQIRLWQLERDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVL 454
Query: 301 LWE-DPKKMRLVVKAE 315
+W+ D K+M V + E
Sbjct: 455 VWKSDRKRMFFVTRYE 470
>gi|295662078|ref|XP_002791593.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279719|gb|EEH35285.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 484
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 169/326 (51%), Gaps = 33/326 (10%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
S+ A++ S + ++ Q L +T+ GF F+L D N Q+W I+ Y+ N
Sbjct: 157 SALGAQQTVTLSKGVKQLLQACHLVEVHDRRVDITKEGFAFVLQDVNTQVWNILILYVEN 216
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE-NW 151
+++ G+ +++SFL LS G++Y L+ Q + D D G+V +E
Sbjct: 217 AEQIGLESVEVLSFLFVLSSLELGQSYEKKHLTSTQLKTLTDLTDFGIVYQHFPPQEATR 276
Query: 152 FIPTKLATNL-----------SMSLT--------DSSARKEGFIVVETNFRMYAYSTSKL 192
F PT+L T L S SLT +SS GFIV+ETN+R+YAY++S L
Sbjct: 277 FYPTRLVTTLTSDSATLGSSISTSLTGPSGPTAANSSEPSTGFIVIETNYRLYAYTSSPL 336
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS- 251
++ LF+ ++Y+ PNLI G IT++S+ A E GITA+QIIS+L +AHP++ S
Sbjct: 337 QISLIALFTTLKYRFPNLITGKITRQSIRRAVEMGITADQIISYLTTHAHPQMRKYHASK 396
Query: 252 ----------VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
+P V DQIRLW+ + +R++ TP + +F S F+ C YA + L+
Sbjct: 397 SSHTVGAPAVLPPTVVDQIRLWQLERDRIKATPGFLFKDFVSLAEFDGPCRYAEEIGVLV 456
Query: 302 WEDPKKMRLVVKAEIHMHMREFLRGQ 327
W+ K+ V H + +LR +
Sbjct: 457 WKSEKRRMFFVTR--HEQVAAYLRSR 480
>gi|225682227|gb|EEH20511.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides brasiliensis Pb03]
gi|226289599|gb|EEH45083.1| TFIIH basal transcription factor complex p52 subunit
[Paracoccidioides brasiliensis Pb18]
Length = 484
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 158/293 (53%), Gaps = 33/293 (11%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T+ GF F+L D N Q+W I+ Y+ N+++ G+ +++SFL LS G++Y L+
Sbjct: 190 ITKEGFAFVLQDVNTQVWNILILYVENAEQIGLESVEVLSFLFVLSSLELGQSYEKKHLT 249
Query: 126 EIQKSMIKDFADLGLVKLQQGRKE-NWFIPTKLATNL-----------SMSLT------- 166
Q + D D G+V +E F PT+L T L S SLT
Sbjct: 250 STQLKTLTDLTDFGIVYQHFPPQEATRFYPTRLVTTLTSDSATLGSSISTSLTGPSGPAA 309
Query: 167 -DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFE 225
+SS GFIV+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E
Sbjct: 310 ANSSEPSTGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRAVE 369
Query: 226 NGITAEQIISFLQQNAHPRVADRMPS-----------VPENVCDQIRLWESDLNRVEMTP 274
GITA+QIIS+L +AHP++ S +P V DQIRLW+ + +R++ TP
Sbjct: 370 MGITADQIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQLERDRIKATP 429
Query: 275 AHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 327
+ +F S F+ C YA + L+W+ K+ V H + +LR +
Sbjct: 430 GFLFKDFVSLAEFDGPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAYLRSR 480
>gi|308452336|ref|XP_003089005.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
gi|308243592|gb|EFO87544.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
Length = 468
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 184/316 (58%), Gaps = 21/316 (6%)
Query: 24 LRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLW 83
LR + L + +TQA S + +F++ + D +T SGFQFLL+ Q+W
Sbjct: 150 LRYLALPSEENTQA-----VSETTRNLFKKANFTSGDSRI-EITTSGFQFLLLSPVKQMW 203
Query: 84 YIVREYISNSQERGINQADLISFLLEL------SFHVAGEAYNLN-TLSEIQKSMIKDFA 136
V EY+ +G + ++I L+++ F E Y ++ + S Q+ ++
Sbjct: 204 TYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKAEKECYQIDPSWSIPQQELLNHLR 263
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLSM--SLTDSSARK--EGFIVVETNFRMYAYSTSKL 192
+LG++ +++ RK+ F T L T+L+ ++ D+SA + G ++VETNFR+YAY++S L
Sbjct: 264 ELGVIFIRK-RKDGVFFLTHLLTHLATNETIDDTSAERVSNGKVIVETNFRVYAYTSSLL 322
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRM 249
I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+ + +
Sbjct: 323 QLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGAI 382
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQIRLWE + R+++ A+ Y F S D F+ CDYA+++ LLW + ++
Sbjct: 383 NCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKL 442
Query: 310 LVVKAEIHMHMREFLR 325
++V E H ++R++ +
Sbjct: 443 VIVNEEGHEYVRQWYK 458
>gi|308460924|ref|XP_003092760.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
gi|308252519|gb|EFO96471.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
Length = 470
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 184/316 (58%), Gaps = 21/316 (6%)
Query: 24 LRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLW 83
LR + L + +TQA S + +F++ + D +T SGFQFLL+ Q+W
Sbjct: 153 LRYLALPSEENTQA-----VSETTRNLFKKANFTSGDSRI-EITTSGFQFLLLSPVKQMW 206
Query: 84 YIVREYISNSQERGINQADLISFLLEL------SFHVAGEAYNLN-TLSEIQKSMIKDFA 136
V EY+ +G + ++I L+++ F E Y ++ + S Q+ ++
Sbjct: 207 TYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKAEKECYQIDPSWSIPQQELLNHLR 266
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLSM--SLTDSSARK--EGFIVVETNFRMYAYSTSKL 192
+LG++ +++ RK+ F T L T+L+ ++ D+SA + G ++VETNFR+YAY++S L
Sbjct: 267 ELGVIFIRK-RKDGVFFLTHLLTHLATNETIDDTSAERVSNGKVIVETNFRVYAYTSSLL 325
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRM 249
I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+ + +
Sbjct: 326 QLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGAI 385
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQIRLWE + R+++ A+ Y F S D F+ CDYA+++ LLW + ++
Sbjct: 386 NCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKL 445
Query: 310 LVVKAEIHMHMREFLR 325
++V E H ++R++ +
Sbjct: 446 VIVNEEGHEYVRQWYK 461
>gi|302495702|ref|XP_003009866.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
gi|291173385|gb|EFE29221.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
Length = 386
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 165/303 (54%), Gaps = 34/303 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS
Sbjct: 83 LVEVRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLE 141
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNL---SMSLTD--- 167
G++Y L+ Q + D D G+V + F PT+LAT L S++++
Sbjct: 142 LGQSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPIS 201
Query: 168 --------------SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
S GFI+VETN+R+YAY++S L ++ LF+ ++++ PNLI G
Sbjct: 202 GEPAVPTTTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITG 261
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS--------VPENVCDQIRLWES 265
IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+
Sbjct: 262 KITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQL 321
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHMHMREFL 324
+ +R++ T + EF + FEA C YA + L+W+ D ++M V + H + FL
Sbjct: 322 ERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFL 378
Query: 325 RGQ 327
R +
Sbjct: 379 RSR 381
>gi|302667863|ref|XP_003025510.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
gi|291189624|gb|EFE44899.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
Length = 386
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 165/303 (54%), Gaps = 34/303 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS
Sbjct: 83 LVEVRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMESVEVLSFVFLLSSLE 141
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNL---SMSLTD--- 167
G++Y L+ Q + D D G+V + F PT+LAT L S++++
Sbjct: 142 LGQSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPIS 201
Query: 168 --------------SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
S GFI+VETN+R+YAY++S L ++ LF+ ++++ PNLI G
Sbjct: 202 GEPAVPTTTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITG 261
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS--------VPENVCDQIRLWES 265
IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+
Sbjct: 262 KITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQL 321
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHMHMREFL 324
+ +R++ T + EF + FEA C YA + L+W+ D ++M V + H + FL
Sbjct: 322 ERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFL 378
Query: 325 RGQ 327
R +
Sbjct: 379 RSR 381
>gi|119179887|ref|XP_001241468.1| hypothetical protein CIMG_08631 [Coccidioides immitis RS]
gi|392866653|gb|EAS30172.2| transcription factor Tfb2 [Coccidioides immitis RS]
Length = 487
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 169/306 (55%), Gaps = 36/306 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G++ +++SFL LS
Sbjct: 181 LVEVRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMDSVEVLSFLFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW-FIPTKLATNL---SMSLTDS-- 168
G++Y+ L+ Q + D D G+V E+ F PT+LAT L SM+L+ S
Sbjct: 240 LGQSYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMALSSSIS 299
Query: 169 --------------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
A GFI++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G
Sbjct: 300 GNLAPAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGK 359
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRV------------ADRMPSV-PENVCDQIR 261
+T++S+ A E GITA+QIIS+L +AHP++ A + SV P V DQIR
Sbjct: 360 LTRQSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLLASVLPPTVVDQIR 419
Query: 262 LWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMR 321
LW+ + +R++ TP + +F S FEA C YA + L+W+ K+ V H +
Sbjct: 420 LWQLERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVA 477
Query: 322 EFLRGQ 327
FLR +
Sbjct: 478 AFLRSR 483
>gi|296818081|ref|XP_002849377.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
gi|238839830|gb|EEQ29492.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
Length = 484
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 162/303 (53%), Gaps = 34/303 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ + +++SF+ LS
Sbjct: 181 LVEIRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIHMESVEVLSFIFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNL------------ 161
G++Y N L+ Q + D D G+V + F PT+LAT L
Sbjct: 240 LGQSYEKNDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMPGPVS 299
Query: 162 --------SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
S T ++ GFI+VETN+R+YAY++S L ++ LF+ ++++ PNLI G
Sbjct: 300 GEPVVPAPSTGPTSATDGGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITG 359
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS--------VPENVCDQIRLWES 265
IT++S+ A E GITA+QI+S+L +AHP++ S +P V DQIRLW+
Sbjct: 360 KITRQSVRRAIEMGITADQIVSYLTTHAHPQMRKTKKSTSNVAASILPPTVVDQIRLWQL 419
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMREFL 324
+ +R++ T + EF + FEA C YA + L+W D ++M V + H + FL
Sbjct: 420 ERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFL 476
Query: 325 RGQ 327
R +
Sbjct: 477 RSR 479
>gi|327298217|ref|XP_003233802.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
gi|326463980|gb|EGD89433.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
Length = 484
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 164/306 (53%), Gaps = 40/306 (13%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS
Sbjct: 181 LVEIRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNLSMSLTDSSARK- 172
G++Y L+ Q + D D G+V + F PT+LAT L+ +DS A
Sbjct: 240 LGQSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLT---SDSLAMSG 296
Query: 173 ----------------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNL 210
GFI+VETN+R+YAY++S L ++ LF+ ++++ PNL
Sbjct: 297 PISGEPTVPTTSAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNL 356
Query: 211 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS--------VPENVCDQIRL 262
I G IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRL
Sbjct: 357 ITGKITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRL 416
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHMHMR 321
W+ + +R++ T + EF + FEA C YA + L+W+ D ++M V + H +
Sbjct: 417 WQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVA 473
Query: 322 EFLRGQ 327
FLR +
Sbjct: 474 AFLRSR 479
>gi|212535854|ref|XP_002148083.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070482|gb|EEA24572.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 481
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 170/316 (53%), Gaps = 32/316 (10%)
Query: 32 GSSTQAERPT-NFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
G+S R T + S + ++ Q G L +T+ GF F+L D N Q+W I+ Y+
Sbjct: 155 GTSGPGVRETVSLSRGVKQLLQAGHLVEIHHGRVDITQDGFAFVLQDVNTQVWQIIILYV 214
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE- 149
+++ +N +++SF+ LS G++Y L+ Q + D D G++ E
Sbjct: 215 ESAKALQVNDVEVLSFIFLLSSLELGQSYEKRHLTPDQLRALADLTDFGIIYQHAPASEA 274
Query: 150 NWFIPTKLATNL-------------SMSLTDSSARKE---GFIVVETNFRMYAYSTSKLH 193
+ F PT+LAT L S+S ++A E GFI++ETN+R+YAY++S L
Sbjct: 275 DRFYPTRLATTLTSDSSALSNTMSSSLSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQ 334
Query: 194 CEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR----- 248
++ LF+ ++Y+ PNL+ G IT++S+ A E GITA+QIIS+L +AHP++
Sbjct: 335 ISLIALFTTLKYRFPNLVTGKITRQSIRRAVEMGITADQIISYLSTHAHPQMRKEGAVKS 394
Query: 249 ------MPS--VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+P +P V DQIRLW+ + +R++ TP + EF S +E C YA + L
Sbjct: 395 TSNTAGIPRSVLPPTVVDQIRLWQLERDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVL 454
Query: 301 LWE-DPKKMRLVVKAE 315
+W+ D K+M V + E
Sbjct: 455 VWKSDRKRMFFVTRYE 470
>gi|392901992|ref|NP_001255864.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
gi|290457493|emb|CBK19514.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
Length = 431
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 179/316 (56%), Gaps = 20/316 (6%)
Query: 24 LRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLW 83
LR + L + +TQA S + +F++ + +T GFQFLL+ Q+W
Sbjct: 103 LRYLALPSEENTQA-----VSETTRNLFKKANFTSGGDTQIEITTFGFQFLLLSPVKQMW 157
Query: 84 YIVREYISNSQERGINQADLISFLLEL------SFHVAGEAYNLNT-LSEIQKSMIKDFA 136
V EY+ +G + ++I L+++ F E Y ++ +E Q ++
Sbjct: 158 TYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKAERECYQIDANWTEPQNELLNHLR 217
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLSM--SLTDSSARK--EGFIVVETNFRMYAYSTSKL 192
+LG++ +++ RK+ F T+L T+L+ ++ D SA K G ++VETNFR+YAY++S L
Sbjct: 218 ELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYTSSLL 276
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR-VADRMP- 250
I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+ +A P
Sbjct: 277 QLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPV 336
Query: 251 -SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQIRLWE + R+ + A+ Y F S D F C+YAR Q+ LLW D ++
Sbjct: 337 NCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKL 396
Query: 310 LVVKAEIHMHMREFLR 325
++V + H +R++ +
Sbjct: 397 VIVNEDGHELVRQWYK 412
>gi|388581217|gb|EIM21527.1| transcription factor Tfb2 [Wallemia sebi CBS 633.66]
Length = 449
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 160/272 (58%), Gaps = 12/272 (4%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
R++ GFQFLL D QLW ++ EY+S S+ R ++ +++SFL L G+ Y++ +L
Sbjct: 160 RISSKGFQFLLEDVQVQLWQLLLEYLSLSEIRQMDLVEVLSFLFVLGTLELGKDYSIESL 219
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS-----------LTDSSARKE 173
+ Q++M+ D D GLV Q+ F PT+LAT L+ S +S+ +
Sbjct: 220 TNTQQAMLSDLRDYGLV-WQRKTSSKRFYPTRLATTLTSSAPPLLPTTESSSFTTSSDNK 278
Query: 174 GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQI 233
FI++ETN+R+YAY+++ L IL LF ++ + PNL++G IT++S+ +A NGITAEQI
Sbjct: 279 RFIILETNYRLYAYTSNPLQISILNLFVTLKARYPNLVIGVITRDSIRSALSNGITAEQI 338
Query: 234 ISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 293
I +L +AH ++ P +P V DQIRLWE + NR++ Y EF S+ +E +Y
Sbjct: 339 IGYLTSHAHTQMHRNNPLLPVTVSDQIRLWELEKNRLKADDGVLYAEFRSQPDYEILLNY 398
Query: 294 ARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
A+ +LW + K V E H +REF+R
Sbjct: 399 AKSYDCVLWSNDIKRMFFVTLEGHQIVREFVR 430
>gi|341886092|gb|EGT42027.1| hypothetical protein CAEBREN_00374 [Caenorhabditis brenneri]
Length = 460
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 183/319 (57%), Gaps = 21/319 (6%)
Query: 24 LRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLW 83
LR + L + +TQA T + M F G +T SGFQFLL+ Q+W
Sbjct: 141 LRYLALPSEENTQAVSETTRNLFKMANFTSG------DSRIEITTSGFQFLLLSPVKQMW 194
Query: 84 YIVREYISNSQERGINQADLISFLLEL------SFHVAGEAYNLN-TLSEIQKSMIKDFA 136
V EY+ +G + ++I L+++ + E Y ++ + + Q+ ++
Sbjct: 195 TYVIEYLKLEMSQGHDIVEVIEPLIQIVLLANRGYKAEKECYQIDPSWTGPQQELLNHLR 254
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLSM--SLTDSSARK--EGFIVVETNFRMYAYSTSKL 192
+LG++ +++ RK+ F T+L T+L+ ++ D+SA K G ++VETNFR+YAY++S L
Sbjct: 255 ELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDTSAEKVSNGKVIVETNFRVYAYTSSLL 313
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR-VADRMP- 250
I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+ +A P
Sbjct: 314 QLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPV 373
Query: 251 -SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQIRLWE + R+++ ++ Y F S + F CDYA+++ LLW D ++
Sbjct: 374 NCLPITVADQIRLWEDERRRMDLKDSYIYSNFESDEEFNGVCDYAKERKILLWADYQRKL 433
Query: 310 LVVKAEIHMHMREFLRGQN 328
++V E H ++R++ + Q
Sbjct: 434 VIVNEEGHEYVRQWYKQQK 452
>gi|255721741|ref|XP_002545805.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
gi|240136294|gb|EER35847.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
Length = 494
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 183/356 (51%), Gaps = 65/356 (18%)
Query: 29 LDNGSSTQAERPTNF----------SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDT 78
LDN +S++ E +F S S++ + + G L R+T SGFQFLL D
Sbjct: 136 LDNFASSKWETILHFMVGTEATATPSDSVLSLLKLGGLMEGPNNKLRITNSGFQFLLQDV 195
Query: 79 NAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADL 138
NAQ+W ++ +Y++ +QE ++ D+++F+ L G++Y ++TLSE Q SM+ D D
Sbjct: 196 NAQIWTLLLQYLNLTQELNMDPVDVLNFIFVLGSLELGKSYAVSTLSETQVSMLADLKDY 255
Query: 139 GLVKLQQGRKENWFIPTKLATNLSMSLTDSSARK---------------EGFIVVETNFR 183
GLV Q+ F PT+LAT L+ +DS+A K + I++ETNF+
Sbjct: 256 GLV-YQRSDTSGRFYPTRLATTLT---SDSAALKTPAMAMDEEEQQVVTKESIIIETNFK 311
Query: 184 MYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 243
+YAY+ S L IL LF +++ + N++ G IT+ES+ NA NGITA+QII FL+ +AH
Sbjct: 312 LYAYTKSPLEIAILNLFVQLKTRFANMVCGQITRESIRNALYNGITADQIIKFLETHAHS 371
Query: 244 RV------------------------------------ADRMPSVPENVCDQIRLWESDL 267
++ ++ +P NV DQI+LW+ +L
Sbjct: 372 QMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGSISQHKLEILPPNVVDQIKLWQLEL 431
Query: 268 NRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
+R++ + + +F ++ ++ +YA + L+W D K + V + + +F
Sbjct: 432 DRIQTFDGYLFKDFANQQEYDILSNYASELGVLIWADKVKRKFFVTKDGMTQVADF 487
>gi|392901990|ref|NP_001255863.1| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
gi|26985915|emb|CAB70230.2| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
Length = 481
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 179/316 (56%), Gaps = 20/316 (6%)
Query: 24 LRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLW 83
LR + L + +TQA S + +F++ + +T GFQFLL+ Q+W
Sbjct: 153 LRYLALPSEENTQA-----VSETTRNLFKKANFTSGGDTQIEITTFGFQFLLLSPVKQMW 207
Query: 84 YIVREYISNSQERGINQADLISFLLEL------SFHVAGEAYNLNT-LSEIQKSMIKDFA 136
V EY+ +G + ++I L+++ F E Y ++ +E Q ++
Sbjct: 208 TYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKAERECYQIDANWTEPQNELLNHLR 267
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLSM--SLTDSSARK--EGFIVVETNFRMYAYSTSKL 192
+LG++ +++ RK+ F T+L T+L+ ++ D SA K G ++VETNFR+YAY++S L
Sbjct: 268 ELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYTSSLL 326
Query: 193 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR-VADRMP- 250
I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+ +A P
Sbjct: 327 QLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPV 386
Query: 251 -SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQIRLWE + R+ + A+ Y F S D F C+YAR Q+ LLW D ++
Sbjct: 387 NCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKL 446
Query: 310 LVVKAEIHMHMREFLR 325
++V + H +R++ +
Sbjct: 447 VIVNEDGHELVRQWYK 462
>gi|412992641|emb|CCO18621.1| predicted protein [Bathycoccus prasinos]
Length = 542
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 170/324 (52%), Gaps = 49/324 (15%)
Query: 47 MMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI------------SNSQ 94
+ K+F L +D R+T GF FLL T+ Q+W ++ Y + ++
Sbjct: 222 LRKLFYAARLITKDG---RITSEGFSFLLGATSEQIWILLARYARGGDFEKKMKNKTTNE 278
Query: 95 ERGI---------------------NQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIK 133
E G + A ++FL+ LSF G Y+ LSE ++ +
Sbjct: 279 ENGEGDKMETNGEDEKQQHKLKSDESSAAAMAFLVRLSFQHPGRKYSKANLSEAERRVAS 338
Query: 134 DFADLGLV--KLQQGRKENWFIPTKLATNLSMSLTDSSA-----RKEGFIVVETNFRMYA 186
+ LG++ NW++PT L+ LS T SSA R +G I+VETNFR+YA
Sbjct: 339 HLSALGVLYENEDDENDNNWYVPTVLSAGLSSVSTTSSAKSALARIDGHIIVETNFRVYA 398
Query: 187 YSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR-- 244
Y+ S+L E+LRLF++ +Y+LPN VG IT++S+ +A GI+ +QI+++LQ AHPR
Sbjct: 399 YTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPDQIVNYLQTRAHPRCT 458
Query: 245 VADR--MPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR-DVFEAACDYARDQSG-L 300
+ R P+VP VCDQIRLW DL RV+ Y +FP + + F+ A + AR+ +
Sbjct: 459 IGKRPNHPAVPPTVCDQIRLWARDLYRVKADDCVMYTDFPMQGNQFQDAVNNARNVGAQI 518
Query: 301 LWEDPKKMRLVVKAEIHMHMREFL 324
LW D K R V A+ H ++ FL
Sbjct: 519 LWMDENKRRFAVDADSHERLKVFL 542
>gi|453232318|ref|NP_001263825.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
gi|412976516|emb|CCO25635.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
Length = 435
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 181/320 (56%), Gaps = 24/320 (7%)
Query: 24 LRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLW 83
LR + L + +TQA S + +F++ + +T GFQFLL+ Q+W
Sbjct: 103 LRYLALPSEENTQA-----VSETTRNLFKKANFTSGGDTQIEITTFGFQFLLLSPVKQMW 157
Query: 84 YIVREYISNSQERGINQADLISFLLELSF-----HVAG-----EAYNLNT-LSEIQKSMI 132
V EY+ +G + ++I L+++ VAG E Y ++ +E Q ++
Sbjct: 158 TYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRVQVAGFKAERECYQIDANWTEPQNELL 217
Query: 133 KDFADLGLVKLQQGRKENWFIPTKLATNLSM--SLTDSSARK--EGFIVVETNFRMYAYS 188
+LG++ +++ RK+ F T+L T+L+ ++ D SA K G ++VETNFR+YAY+
Sbjct: 218 NHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYT 276
Query: 189 TSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR-VAD 247
+S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+ +A
Sbjct: 277 SSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIAT 336
Query: 248 RMP--SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
P +P V DQIRLWE + R+ + A+ Y F S D F C+YAR Q+ LLW D
Sbjct: 337 SGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDN 396
Query: 306 KKMRLVVKAEIHMHMREFLR 325
++ ++V + H +R++ +
Sbjct: 397 QQKLVIVNEDGHELVRQWYK 416
>gi|193654859|ref|XP_001944632.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 470
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 160/292 (54%), Gaps = 12/292 (4%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S ++ + GL+ R +P +T +G+QFLL+D Q+WY + Y+ + RG++ A
Sbjct: 181 SDAVRVLLNAGLMVRDTDNSPVITSTGYQFLLLDMATQVWYFMLHYMETVESRGLDLAQY 240
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLV---KLQQGRKENWFIPTKLATN 160
+ FL ++ G Y + + E ++ ++ + GLV KL+ GR F PT+L
Sbjct: 241 LIFLFQIHLSTLGWDYITDGMPENLQTFLQHLQEFGLVYQRKLKAGR----FCPTRLVIE 296
Query: 161 LSMSLTDSSAR---KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITK 217
+ + +S R KE +IVVETNFR+YA + S L ++ LF+ + Y+ PN+ G +T+
Sbjct: 297 MGRENSHTSKRMKKKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYRFPNMSAGILTR 356
Query: 218 ESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHY 277
+S+ A NGITA QI+ FL + HP++ + +P+ V DQI LWE + NR+
Sbjct: 357 DSVQTALRNGITAAQIVRFLTVHTHPQMQE--CGMPQTVIDQIYLWEYERNRLTYRDGVL 414
Query: 278 YDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y + + + +EA +YA D LLW D ++ ++V + H + F + Q K
Sbjct: 415 YSDINTPNDYEAIKNYAADIGALLWCDERQRNIIVSTDGHNDVTTFWKKQPK 466
>gi|212535856|ref|XP_002148084.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070483|gb|EEA24573.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 422
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 170/316 (53%), Gaps = 32/316 (10%)
Query: 32 GSSTQAERPT-NFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
G+S R T + S + ++ Q G L +T+ GF F+L D N Q+W I+ Y+
Sbjct: 96 GTSGPGVRETVSLSRGVKQLLQAGHLVEIHHGRVDITQDGFAFVLQDVNTQVWQIIILYV 155
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE- 149
+++ +N +++SF+ LS G++Y L+ Q + D D G++ E
Sbjct: 156 ESAKALQVNDVEVLSFIFLLSSLELGQSYEKRHLTPDQLRALADLTDFGIIYQHAPASEA 215
Query: 150 NWFIPTKLATNL-------------SMSLTDSSARKE---GFIVVETNFRMYAYSTSKLH 193
+ F PT+LAT L S+S ++A E GFI++ETN+R+YAY++S L
Sbjct: 216 DRFYPTRLATTLTSDSSALSNTMSSSLSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQ 275
Query: 194 CEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR----- 248
++ LF+ ++Y+ PNL+ G IT++S+ A E GITA+QIIS+L +AHP++
Sbjct: 276 ISLIALFTTLKYRFPNLVTGKITRQSIRRAVEMGITADQIISYLSTHAHPQMRKEGAVKS 335
Query: 249 ------MPS--VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+P +P V DQIRLW+ + +R++ TP + EF S +E C YA + L
Sbjct: 336 TSNTAGIPRSVLPPTVVDQIRLWQLERDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVL 395
Query: 301 LWE-DPKKMRLVVKAE 315
+W+ D K+M V + E
Sbjct: 396 VWKSDRKRMFFVTRYE 411
>gi|50310215|ref|XP_455127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901296|sp|Q6CLR2.1|TFB2_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49644263|emb|CAG97834.1| KLLA0F01056p [Kluyveromyces lactis]
Length = 496
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 49/320 (15%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GL+ + ++T GFQFLL D NAQ+W ++ +Y+ ++ ++ D+++F+ L
Sbjct: 173 GLMEEAEYGELKITNQGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGAL 232
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLAT-------------- 159
G+AY + LS Q++M++D D GL+ Q F PT+LAT
Sbjct: 233 QLGKAYKCDQLSNTQRTMLQDMRDYGLIYQNQSDYAK-FYPTRLATLLTSDTKAFRSASV 291
Query: 160 ---------NLSMSLTDSSARKE-------GFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
N + ++ S + E G +++ETNF++Y+YS S L IL LF +
Sbjct: 292 ALDSVLNKANETTAVEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHL 351
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------------------V 245
+ + N++ G +T+ES+ NA NGITAEQII++L+ +AHPR V
Sbjct: 352 KSRFANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTV 411
Query: 246 ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
+ + +P V DQIRLW+ +L+R+ + Y +F S ++ DYA+D LLW++
Sbjct: 412 KETLQVLPPTVVDQIRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNE 471
Query: 306 KKMRLVVKAEIHMHMREFLR 325
KK V E + + +F R
Sbjct: 472 KKKMFFVSTEGNSQVLDFHR 491
>gi|303321033|ref|XP_003070511.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110207|gb|EER28366.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036051|gb|EFW17991.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Coccidioides posadasii str. Silveira]
Length = 487
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 169/306 (55%), Gaps = 36/306 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G++ +++SFL LS
Sbjct: 181 LVEVRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMDSVEVLSFLFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW-FIPTKLATNL---SMSLTD--- 167
G++Y+ L+ Q + D D G+V E+ F PT+LAT L SM+L+
Sbjct: 240 LGQSYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMALSSPIS 299
Query: 168 -------------SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
+ A GFI++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G
Sbjct: 300 GNLAPAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGK 359
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRV-----------ADRMPS--VPENVCDQIR 261
+T++S+ A E GITA+QIIS+L +AHP++ +P+ +P V DQIR
Sbjct: 360 LTRQSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLPASVLPPTVVDQIR 419
Query: 262 LWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMR 321
LW+ + +R++ TP + +F S FEA C YA + L+W+ K+ V H +
Sbjct: 420 LWQLERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVA 477
Query: 322 EFLRGQ 327
FLR +
Sbjct: 478 AFLRSR 483
>gi|354546081|emb|CCE42810.1| hypothetical protein CPAR2_204530 [Candida parapsilosis]
Length = 451
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 181/345 (52%), Gaps = 67/345 (19%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S S++ + + G L + E +T +GFQFLL D NAQ+W ++ +Y++ + E +N D+
Sbjct: 112 SRSVLSLLKLGGLMEGESELT-ITNTGFQFLLQDVNAQIWTLLLQYLNLTSESNMNPVDV 170
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM 163
++F+ L G++Y++ +LSE Q SM+ D DLGL+ Q+ + + F PT+LAT L+
Sbjct: 171 LNFIFILGCLELGKSYSVLSLSETQVSMLADLKDLGLI-YQKSKTSSRFYPTRLATTLT- 228
Query: 164 SLTDSSARK-------------EG---------FIVVETNFRMYAYSTSKLHCEILRLFS 201
+DSSA K EG I++ETNF++YAY+ S L IL LF
Sbjct: 229 --SDSSALKTPSMAVEQALEESEGQMMTSTSRESIIIETNFKIYAYTNSPLEIAILNLFV 286
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA--------------- 246
+++ + N++ G IT+ES+ NA NGIT++QII FL+ +AHP++
Sbjct: 287 QMKTRFSNMVCGQITRESIRNALYNGITSDQIIKFLETHAHPQMKALAKEKLDKKVEFDA 346
Query: 247 ---------------------DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
++ +P NV DQI+LW+ +L+R++ + + +F ++
Sbjct: 347 SHNINTAGGAPQSKTDGTISQHKLEVIPPNVVDQIKLWQLELDRIQTVEGYLFKDFANQQ 406
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF----LRG 326
++ +YA + L+W D K + V + + +F LRG
Sbjct: 407 EYDMLSNYATELGVLVWGDKAKRKFFVTKDGMAQVADFANRKLRG 451
>gi|453232316|ref|NP_001263824.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
gi|412976517|emb|CCO25636.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
Length = 485
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 181/320 (56%), Gaps = 24/320 (7%)
Query: 24 LRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLW 83
LR + L + +TQA S + +F++ + +T GFQFLL+ Q+W
Sbjct: 153 LRYLALPSEENTQA-----VSETTRNLFKKANFTSGGDTQIEITTFGFQFLLLSPVKQMW 207
Query: 84 YIVREYISNSQERGINQADLISFLLELSF-----HVAG-----EAYNLNT-LSEIQKSMI 132
V EY+ +G + ++I L+++ VAG E Y ++ +E Q ++
Sbjct: 208 TYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRVQVAGFKAERECYQIDANWTEPQNELL 267
Query: 133 KDFADLGLVKLQQGRKENWFIPTKLATNLSM--SLTDSSARK--EGFIVVETNFRMYAYS 188
+LG++ +++ RK+ F T+L T+L+ ++ D SA K G ++VETNFR+YAY+
Sbjct: 268 NHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYT 326
Query: 189 TSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR-VAD 247
+S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+ +A
Sbjct: 327 SSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIAT 386
Query: 248 RMP--SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
P +P V DQIRLWE + R+ + A+ Y F S D F C+YAR Q+ LLW D
Sbjct: 387 SGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDN 446
Query: 306 KKMRLVVKAEIHMHMREFLR 325
++ ++V + H +R++ +
Sbjct: 447 QQKLVIVNEDGHELVRQWYK 466
>gi|315041383|ref|XP_003170068.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
gi|311345102|gb|EFR04305.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
Length = 484
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 160/303 (52%), Gaps = 34/303 (11%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS
Sbjct: 181 LVEIRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNLSMSLTDSSARKE 173
G++Y L+ Q + D D G+V + F PT+LAT L+ S
Sbjct: 240 LGQSYEKKNLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPIS 299
Query: 174 G--------------------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
G FI+VETN+R+YAY++S L ++ LF+ ++++ PNLI G
Sbjct: 300 GEPTVPAAAAGATTAGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITG 359
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS--------VPENVCDQIRLWES 265
IT++S+ A E GITA+QI+S+L +AHP++ S +P V DQIRLW+
Sbjct: 360 KITRQSVRRAIEMGITADQIVSYLTTHAHPQMRKTKKSTTNVSSTVLPPTVVDQIRLWQL 419
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMREFL 324
+ +R++ T + EF + FEA C YA + L+W D ++M V + H + FL
Sbjct: 420 ERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFL 476
Query: 325 RGQ 327
R +
Sbjct: 477 RSR 479
>gi|326483225|gb|EGE07235.1| transcription factor Tfb2 [Trichophyton equinum CBS 127.97]
Length = 484
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 163/306 (53%), Gaps = 40/306 (13%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS
Sbjct: 181 LVEIRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNLSMSLTDSSARK- 172
G++Y L+ Q + D D G+V + F PT+LAT L+ +DS A
Sbjct: 240 LGQSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSARFYPTRLATTLT---SDSLAMSG 296
Query: 173 ----------------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNL 210
GFI+VETN R+YAY++S L ++ LF+ ++++ PNL
Sbjct: 297 PISGEPAVPTTTSGTTTSGDAGTGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNL 356
Query: 211 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS--------VPENVCDQIRL 262
I G IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRL
Sbjct: 357 ITGKITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRL 416
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHMHMR 321
W+ + +R++ T + EF + FEA C YA + L+W+ D ++M V + H +
Sbjct: 417 WQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVA 473
Query: 322 EFLRGQ 327
FLR +
Sbjct: 474 AFLRSR 479
>gi|149238950|ref|XP_001525351.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450844|gb|EDK45100.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 503
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 181/358 (50%), Gaps = 69/358 (19%)
Query: 8 NQCLLVLLQGF--QPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPR 65
N+ L L F Q W ++ L T+ +P S S++ + + G L + +E
Sbjct: 129 NKVDLAFLDSFASQKWESI----LHFMVGTEGTKPP--SKSVLSLLKLGGLMEQHEEDGT 182
Query: 66 L--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNT 123
L T +GFQFLL D NAQ+W ++ +Y++ +QE ++ D+++F+ L G +Y+++
Sbjct: 183 LNITNTGFQFLLQDVNAQIWTLLLQYLNLTQELNMDAVDVLNFIFILGSLELGNSYSVSN 242
Query: 124 LSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS--------------------- 162
LSE Q SM+ D D GLV Q+ + F PT+LAT L+
Sbjct: 243 LSETQVSMLADLKDYGLV-YQKSDTSSRFYPTRLATTLTSDSAALKTPSMAVEQALDETE 301
Query: 163 MSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYN 222
SL S+ KE I++ETNF+MYAY+ S L IL LF ++ + N+I G IT+ES+ N
Sbjct: 302 TSLASSTQTKES-IIIETNFKMYAYTNSPLEIAILNLFVHMKTRFSNMICGQITRESIRN 360
Query: 223 AFENGITAEQIISFLQQNAHPRV------------------------------------A 246
A NGITA+QII FL+ +AHP++
Sbjct: 361 ALYNGITADQIIKFLETHAHPQMRALAKERLDKKVEFDASHNINTAGGAPQSKTDGAISQ 420
Query: 247 DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWED 304
R+ +P NV DQI+LW+ +L+R++ + + +F ++ ++ +YA + L+W D
Sbjct: 421 HRLEVLPPNVVDQIKLWQLELDRIQTFDGYLFKDFANQQEYDMLSNYAAEIGVLIWAD 478
>gi|298705308|emb|CBJ48998.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 534
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 159/307 (51%), Gaps = 40/307 (13%)
Query: 30 DNGSSTQAERPTNF---SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIV 86
+ G ST R F S M V RG L R+T+ G++F+L + + Q W +V
Sbjct: 183 EEGRSTPPARVVKFMEESGLMRPVRGRGAL--------RITDKGYEFMLKEAHVQAWMVV 234
Query: 87 REYISN-SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQ 145
I+ + + + +L++FL +LS+ G+AY L L++ Q+ + +DF +LGL+ ++
Sbjct: 235 HALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLL-FKR 293
Query: 146 GRKENWFIPTKLATNLSMSLTDS----------------------SARKEG----FIVVE 179
K F PT +A NL + S ++E I+VE
Sbjct: 294 KAKSTRFYPTSIAVNLIFGSSPSGDAGGAGGGGTQRKPQPAGGLGGGKREDDTSIHIIVE 353
Query: 180 TNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 239
TNF++ AY+ SKLH +L LF ++ LPN IVGAIT+ES+ A GI Q++ FL+
Sbjct: 354 TNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKW 413
Query: 240 NAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYD-EFPSRDVFEAACDYARDQS 298
+AHP V R P VPEN+ DQ+ LWE + +R+E D + SRD F ++A +
Sbjct: 414 HAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQ 473
Query: 299 GLLWEDP 305
GLLW P
Sbjct: 474 GLLWSSP 480
>gi|66800623|ref|XP_629237.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
gi|74850716|sp|Q54C29.1|TF2H4_DICDI RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=TFIIH basal transcription factor complex subunit 4
gi|60462610|gb|EAL60813.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
Length = 483
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 171/286 (59%), Gaps = 18/286 (6%)
Query: 56 LSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GINQADLISFLLELS 111
L++++ + +T GF+FLL D Q+W ++ Y+ + +++ ++ DL+SFL LS
Sbjct: 196 LTKQEGDGLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGSRNDLLSFLFRLS 255
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS----MSLTD 167
F G Y ++ LSE QK + GL+ ++ F PT+L +L+ +SL
Sbjct: 256 FLNLGRGYLVSELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLIISLTTGKTLSLIQ 314
Query: 168 S-------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
S + +++G+IV+ETN+R+YAY++S L +L LF K+ Y+LPNL VG IT+ES+
Sbjct: 315 SISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESI 374
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ NR+ T + Y+
Sbjct: 375 RTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNS 434
Query: 281 FPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMREFLR 325
FP+ D + A +A++Q +W DP K LVVK E + +R F++
Sbjct: 435 FPTNDCYIATLKFAKEQDYYIWSHDPLKT-LVVKEEGNDPIRNFIK 479
>gi|448527133|ref|XP_003869438.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis Co 90-125]
gi|380353791|emb|CCG23303.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis]
Length = 500
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 167/323 (51%), Gaps = 66/323 (20%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T +GFQFLL D NAQ+W ++ +Y++ + E +N D+++F+ L G+ Y+++ LS
Sbjct: 182 ITNTGFQFLLQDANAQIWTLLLQYLNLTSELNMNPVDVLNFIFILGCLELGKGYSVSNLS 241
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARK------------- 172
E Q SM+ D DLGLV Q+ N F PT+LAT L+ +DSSA K
Sbjct: 242 ETQVSMLADLKDLGLV-YQKSDTSNKFYPTRLATTLT---SDSSALKTPSMAVQQALEEN 297
Query: 173 ---------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
I++ETNF++YAY+ S L IL LF +++ + N++ G IT+ES+ NA
Sbjct: 298 EEQMMASNSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSNMVCGQITRESIRNA 357
Query: 224 FENGITAEQIISFLQQNAHPRV------------------------------------AD 247
NGIT++QII FL+ +AHP++
Sbjct: 358 LYNGITSDQIIKFLETHAHPQMRALAKEKLDKKVEFDASHNINTAGGAPQSKTDGAISQH 417
Query: 248 RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKK 307
++ +P NV DQI+LW+ +L+R++ + + +F ++ ++ +YA + L+W D K
Sbjct: 418 KLEVIPPNVVDQIKLWQLELDRIQTVEGYLFKDFANQQEYDTLSNYATELGVLVWGDKVK 477
Query: 308 MRLVVKAEIHMHMREF----LRG 326
+ V + + +F LRG
Sbjct: 478 RKFFVTKDGMAQVADFANRKLRG 500
>gi|294660113|ref|XP_002777731.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
gi|218511847|sp|Q6BGW8.2|TFB2_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|199434471|emb|CAR66042.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
Length = 515
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 174/346 (50%), Gaps = 76/346 (21%)
Query: 40 PTNFSSSMMKVFQRGLLSRRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERG 97
P+N S++K GL+ +K RL T SGFQFLL D NAQ+W ++ +Y++ +Q+
Sbjct: 161 PSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQFLLQDINAQIWTLLLQYLNLTQDLN 218
Query: 98 INQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKL 157
++ D+++F+ L G+ Y +++LSE Q SM+ D D GL+ Q+ F PT+L
Sbjct: 219 MDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLADLRDYGLI-YQRSENSERFYPTRL 277
Query: 158 ATNLSMSLTDSSARK---------------------------EGFIVVETNFRMYAYSTS 190
AT L+ +DS+A K +G I++ETNF++YAY+ S
Sbjct: 278 ATTLT---SDSAALKSPSMAMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNS 334
Query: 191 KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA---- 246
L IL LF ++ + N++ G IT+ES+ NA NGITA+QII FL+ +AH ++
Sbjct: 335 PLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAK 394
Query: 247 -------------------------------------DRMPSVPENVCDQIRLWESDLNR 269
++ +P V DQI+LW+ +L+R
Sbjct: 395 ERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDR 454
Query: 270 VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
++ + + +F S+ FEA +YA + LLW + KM+ V +
Sbjct: 455 IQTFEGYLFKDFASQQEFEALSNYASEIGVLLWSNKSKMKFFVTKD 500
>gi|330797174|ref|XP_003286637.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
gi|325083385|gb|EGC36839.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
Length = 471
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 177/324 (54%), Gaps = 36/324 (11%)
Query: 34 STQAERPTNFSSSMMKVFQRGLLSRRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYISN 92
S A +P+ F S ++ L+RRD++ +T GF+FLL D Q+W ++ Y+++
Sbjct: 148 SDDAAQPSKFISDLL---LSSNLTRRDQDGSLSITSDGFKFLLKDVYTQIWTLLIVYLND 204
Query: 93 SQER---GINQA---DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQG 146
+++ G+ Q DL+ FL LSF G+ Y + L+E+QK + GL+ ++
Sbjct: 205 LEKKRREGLTQGSRNDLLGFLFRLSFLQLGKGYLVGELTELQKEYLICLKQFGLIYMKSD 264
Query: 147 RKENWFIPTKLATNLS----MSLTDSSA---------------------RKEGFIVVETN 181
+F PT+L +L+ +SL + A ++ G+IV+ETN
Sbjct: 265 ASL-FFYPTRLIISLTTGKTLSLIQTLAVDKINSSSNSANTVASSTIEKKESGYIVLETN 323
Query: 182 FRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 241
+R+YAY+ S L +L LF K+ Y+LPNL VG IT+ES+ A +GITA+QII F++ NA
Sbjct: 324 YRLYAYTASSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFIRHNA 383
Query: 242 HPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
HP + +P+ V +QI LWE + NR+ T + Y+ FP+ D + A +A++Q +
Sbjct: 384 HPNAVNNGQPIPDVVAEQILLWEQERNRITYTKSVLYNSFPTTDCYHATLKFAKEQDYYI 443
Query: 302 WEDPKKMRLVVKAEIHMHMREFLR 325
W + + LVV + +R F++
Sbjct: 444 WSNDQLKTLVVNENGNDPIRNFIK 467
>gi|241958748|ref|XP_002422093.1| TFIIH subunit, putative; tanscription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223645438|emb|CAX40094.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 494
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 167/312 (53%), Gaps = 55/312 (17%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S S++ + + G L R+T SGFQFLL D NAQ+W ++ +Y++ +QE ++ D+
Sbjct: 161 SDSVLSLLKLGGLMEGPNNDLRITNSGFQFLLQDVNAQIWTLLLQYLNLTQELNMDPVDV 220
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM 163
++F+ L G++Y++++LSE Q SM+ D D GLV Q+ F PT+LAT L+
Sbjct: 221 LNFIFILGSLELGKSYSVSSLSETQVSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLT- 278
Query: 164 SLTDSSARK---------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
+DS+A K + I++ETNF++YAY+ S L IL LF + +
Sbjct: 279 --SDSAALKTPSMAMDEEEQQVVSKESIIIETNFKIYAYTKSPLEIAILNLFVHFKTRFA 336
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----------------------- 245
N++ G IT+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 337 NMVCGQITRESIRNALYNGITADQIIKFLETHAHPQMRILAKEKLDKKIEFDTSHNINTA 396
Query: 246 -------ADRMPS------VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 292
D M S +P NV DQI+LW+ +L+R++ + + +F ++ ++ +
Sbjct: 397 GGAPQSKTDGMISQHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEYDILSN 456
Query: 293 YARDQSGLLWED 304
YA + L+W D
Sbjct: 457 YASELGVLIWAD 468
>gi|154273196|ref|XP_001537450.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415962|gb|EDN11306.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 455
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 152/274 (55%), Gaps = 33/274 (12%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N+++ G++ +++SFL LS
Sbjct: 155 LVEVRDRRV-EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLE 213
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE-NWFIPTKLATNL-----------S 162
G++Y L+ Q + D D G+V +E F PT+LAT L S
Sbjct: 214 LGQSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSIS 273
Query: 163 MSLT--------DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
SLT S+ GFI++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 274 SSLTAPNGVPSATSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGK 333
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS------------VPENVCDQIRL 262
+T++S+ A E GITA+QIIS+L +AHP++ + +P V DQIRL
Sbjct: 334 LTRQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKPGANPVGVHTVLPPTVVDQIRL 393
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 296
W+ + +R++ TP + +F S FE C YA +
Sbjct: 394 WQLERDRIKATPGFLFKDFVSLAEFEGPCRYAEE 427
>gi|68490740|ref|XP_710812.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|68490763|ref|XP_710801.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432046|gb|EAK91553.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432058|gb|EAK91564.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|238879997|gb|EEQ43635.1| TFIIH basal transcription factor complex subunit 2 [Candida
albicans WO-1]
Length = 494
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 166/310 (53%), Gaps = 51/310 (16%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S S++ + + G L R+T SGFQFLL D NAQ+W ++ +Y++ +QE ++ D+
Sbjct: 161 SDSVLSLLKLGGLMEGPNNDLRITNSGFQFLLQDVNAQIWTLLLQYLNLTQELNMDPVDV 220
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL-- 161
++F+ L G++Y++ +LSE Q SM+ D D GLV Q+ F PT+LAT L
Sbjct: 221 LNFIFVLGSLELGKSYSVLSLSETQVSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLTS 279
Query: 162 --------SMSLTDSS---ARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNL 210
SM++ + A KE I++ETNF++YAY+ S L IL LF + + N+
Sbjct: 280 DSAALKTPSMAMDEEEQQVATKES-IIIETNFKIYAYTKSPLEIAILNLFVHFKTRFANM 338
Query: 211 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------------- 245
+ G IT+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 339 VCGQITRESIRNALYNGITADQIIKFLETHAHPQMRILAKEKLDKKIEFDTSHNINTAGG 398
Query: 246 -----ADRMPS------VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 294
D M S +P NV DQI+LW+ +L+R++ + + +F ++ ++ +YA
Sbjct: 399 APQSKTDGMVSQHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEYDILSNYA 458
Query: 295 RDQSGLLWED 304
+ L+W D
Sbjct: 459 SELGVLIWAD 468
>gi|344303892|gb|EGW34141.1| RNA polymerase II transcription factor B subunit 2 [Spathaspora
passalidarum NRRL Y-27907]
Length = 519
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 181/355 (50%), Gaps = 77/355 (21%)
Query: 40 PTNFSSSMMKVFQRGLLSRRDKEAP--RLTESGFQFLLMDTNAQLWYIVREYISNSQERG 97
P+N S++++ GL+ + A ++T +GFQFLL D NAQ+W ++ +Y++ +QE
Sbjct: 161 PSNSVLSLLRL--GGLMEGPGRGASNLKITNTGFQFLLQDVNAQIWTLLLQYLNLTQELN 218
Query: 98 INQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKL 157
++ D+++F+ L G++Y +++LSE Q SM+ D D GLV ++ + F PT+L
Sbjct: 219 MDPVDVLNFIFVLGSLELGKSYAVSSLSETQVSMLADLKDYGLV-YRRTDTSSRFYPTRL 277
Query: 158 ATNLSMSLTDSSARK------------------------------EGFIVVETNFRMYAY 187
AT L+ +DSSA K +G +++ETNF++YAY
Sbjct: 278 ATTLT---SDSSALKTPAMAVEQALDSVEGGTDNEVSQTAPPGNIQGTVIIETNFKLYAY 334
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-- 245
+ S L IL LF + + N++ G IT+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 335 TNSPLEIAILNLFVHLRTRFANMVCGQITRESIRNALYNGITADQIIRFLETHAHPQMKV 394
Query: 246 -------------------------------AD------RMPSVPENVCDQIRLWESDLN 268
AD ++ +P NV DQI+LW+ +L+
Sbjct: 395 LAKEKLDKKIEFDTSHNINTAGGAPQSQALRADGSVAQHKLEILPPNVVDQIKLWQLELD 454
Query: 269 RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
R++ + + +FP++ F+ YA + L+W D K + V + + +F
Sbjct: 455 RIQTFDGYLFKDFPNQQEFDKLSSYASELGVLIWSDKIKRKFFVTKDGMSQVADF 509
>gi|150863860|ref|XP_001382481.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
gi|149385116|gb|ABN64452.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
Length = 515
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 185/370 (50%), Gaps = 76/370 (20%)
Query: 29 LDNGSSTQAERPTNF----------SSSMMKVFQRGLLSRRDKEAP---RLTESGFQFLL 75
LDN +S++ E +F ++S++ + + G L +P ++T +GFQFLL
Sbjct: 137 LDNFASSKWETILHFMVGTEATATPTTSVLSLLKSGGLMEGPGNSPQNLKITNTGFQFLL 196
Query: 76 MDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDF 135
D NAQ+W ++ +Y++ +QE ++ D+++F+ L G++Y +++LS Q SM+ D
Sbjct: 197 QDVNAQIWTLLLQYLNLTQELHMDPVDVLNFIFVLGSLELGKSYLVSSLSATQVSMLADL 256
Query: 136 ADLGLVKLQQGRKENWFIPTKLATNL----------SMSL--------------TDSSAR 171
D GLV Q+ F PT+LAT L SM++ D+
Sbjct: 257 RDYGLV-YQRTDSSGRFYPTRLATTLTSDSAALKTPSMAIEQALGASDGGEEQQIDTPTG 315
Query: 172 KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAE 231
+G +++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ +A NGITA+
Sbjct: 316 NQGTVIIETNFKLYAYTNSPLEIAILNLFVHLKSRFTNMVCGQITRESIRSALYNGITAD 375
Query: 232 QIISFLQQNAHPRVA--------------------------------------DRMPSVP 253
QII FL+ +AHP++ ++ +P
Sbjct: 376 QIIKFLETHAHPQMKLLAKEKLDKKIEFDTSHNINTAGGAPQSKVSGEGNVAQHKLEILP 435
Query: 254 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVK 313
V DQI+LW+ +L+R++ + + +F ++ F+ +YA + L+W D K + V
Sbjct: 436 PTVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEFDTLSNYASEVGVLVWSDKIKKKFFVT 495
Query: 314 AEIHMHMREF 323
AE + EF
Sbjct: 496 AEGMTQVAEF 505
>gi|389642093|ref|XP_003718679.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|351641232|gb|EHA49095.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|440469172|gb|ELQ38293.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae Y34]
gi|440481925|gb|ELQ62459.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae P131]
Length = 490
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 169/301 (56%), Gaps = 28/301 (9%)
Query: 29 LDNGSSTQAERPTNFSSSMMK------VFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQL 82
++ S + + NF S ++ + Q GL+ RR E +T++GF FLL + NAQ+
Sbjct: 160 VEETDSMEPSKKYNFGGSKLQDTVKTLLVQGGLVQRRSSERISITKTGFTFLLQEANAQV 219
Query: 83 WYIVREYISNSQERGINQA-DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLV 141
W ++ +++ + E N+A D++SFL L G+AY+ LSE +++M+ D D GLV
Sbjct: 220 WTLLLQWLHSVNEDNTNRAVDMLSFLFMLGTLELGQAYDTGALSEERRNMLPDLNDFGLV 279
Query: 142 KLQQGRKENWFIPTKLATNL--------SMSLTDSSARKE-------GFIVVETNFRMYA 186
+ + +F PT+LAT L S+S ++A E G I++ETNFR+YA
Sbjct: 280 YIPPSNPDQYF-PTRLATTLTSGSSALRSVSSGVAAATAEAGENNTKGAIILETNFRIYA 338
Query: 187 YSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP--- 243
Y+++ L IL LF+ ++ + ++ G +++ S+ A +GITA+QII +L +AH
Sbjct: 339 YTSTPLQIAILALFANLKMRFAGMVTGQLSRHSIKRAISHGITADQIIEYLASHAHEQMH 398
Query: 244 RVAD--RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
R+A P +P V DQIRLW+ + R+++ + + +F S+ F+A DYA + L+
Sbjct: 399 RIAAIRNKPVLPPTVVDQIRLWQLETERMQVQRGYLFKDFESQAEFKAIADYADEVGVLI 458
Query: 302 W 302
W
Sbjct: 459 W 459
>gi|366997767|ref|XP_003683620.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
gi|357521915|emb|CCE61186.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
Length = 504
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 60/317 (18%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL D N+Q+W ++ +Y+ ++ +N D+++F+ L G+AY++ L
Sbjct: 185 KITNDGFQFLLQDVNSQIWTLLLQYLKIAEALHMNPVDILNFIFMLGSLEFGKAYSVEGL 244
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKE----------- 173
S+ QK M+KD D GL+ Q+ F PT LAT L+ +DSS +
Sbjct: 245 SDTQKKMLKDMRDYGLI-FQKTSNATVFYPTTLATQLT---SDSSTVRSASGAIDSLLSQ 300
Query: 174 ---------------------------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQ 206
G +VVETNF++Y+YS S L IL LF + +
Sbjct: 301 TKEANNNDSQNLGTDTDDLVGNQSVEVGALVVETNFKLYSYSNSPLQIAILSLFVHLRTR 360
Query: 207 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADR 248
N++ G IT+ES+ NA NG+TA+QII++LQ +AHP++ D+
Sbjct: 361 FSNMVTGQITRESIRNALANGVTADQIIAYLQSHAHPQMRRLAETTLKKKLELDPNTKDQ 420
Query: 249 MPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKM 308
+ +P V DQI+LW+ +L+R+ Y +F + + +YA+D LLW++ +K
Sbjct: 421 LQILPPTVVDQIKLWQLELDRILSYDGSLYSDFDNNQEYNMLYNYAKDIGVLLWKNDRKR 480
Query: 309 RLVVKAEIHMHMREFLR 325
+ V E + + +F +
Sbjct: 481 KFFVSKEGNSQVLDFAK 497
>gi|326474968|gb|EGD98977.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton tonsurans CBS 112818]
Length = 489
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 151/281 (53%), Gaps = 36/281 (12%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS
Sbjct: 181 LVEIRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNLSMSLTDSSARK- 172
G++Y L+ Q + D D G+V + F PT+LAT L+ +DS A
Sbjct: 240 LGQSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSARFYPTRLATTLT---SDSLAMSG 296
Query: 173 ----------------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNL 210
GFI+VETN R+YAY++S L ++ LF+ ++++ PNL
Sbjct: 297 PISGEPAVPTTTSGTTTSGDAGTGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNL 356
Query: 211 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPS--------VPENVCDQIRL 262
I G IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRL
Sbjct: 357 ITGKITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRL 416
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE 303
W+ + +R++ T + EF + FEA C YA + L+W+
Sbjct: 417 WQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWK 457
>gi|345569654|gb|EGX52519.1| hypothetical protein AOL_s00043g13 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 169/308 (54%), Gaps = 26/308 (8%)
Query: 32 GSSTQA-ERPTNFSSSMMKVFQRGLLSRRDKEAPR-LTESGFQFLLMDTNAQLWYIVREY 89
G+ TQ+ +RP S ++++ G L +++ + +T+ GF FLL + N+Q+W ++ Y
Sbjct: 150 GNETQSSQRP---SEGVVRLLLHGKLMEQNRASGTVITQLGFSFLLQEVNSQVWTLLLLY 206
Query: 90 ISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE 149
+ +++ ++ D++ FL L G+ Y++ +L+ QK M++D D G+V Q+
Sbjct: 207 LDMAEQLRMDPVDILHFLFLLGSLELGQDYDMKSLTPTQKGMLEDLRDYGIV-YQRKSSS 265
Query: 150 NWFIPTKLATNLS---MSLTDSSAR---------KEGFIVVETNFRMYAYSTSKLHCEIL 197
F PT+LAT L+ SL +A + GF+++ETN+ S L +L
Sbjct: 266 RRFYPTRLATGLTSEIRSLRSPAATLANATPGNDENGFLIIETNYH------SPLQIAVL 319
Query: 198 RLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVC 257
LF+++ + PNL+ IT+ES+ A GITAEQII ++ NAHP++ P +P V
Sbjct: 320 NLFARLISRFPNLVTARITRESIRQAIGKGITAEQIIDYMTANAHPQLRKNSPVLPPTVV 379
Query: 258 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIH 317
DQIRLW+ + R+++T + + EF + F A C YA D L+W D K L V H
Sbjct: 380 DQIRLWQIEGERMKVTSGYLFKEFATNAEFNAVCKYADDIGVLVWIDKNKGMLFVSK--H 437
Query: 318 MHMREFLR 325
+ +++R
Sbjct: 438 EQIADYIR 445
>gi|194388768|dbj|BAG60352.1| unnamed protein product [Homo sapiens]
Length = 386
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 131/195 (67%), Gaps = 4/195 (2%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 187 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 246
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 247 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 305
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 306 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 365
Query: 229 TAEQIISFLQQNAHP 243
TA+QII FL+ AHP
Sbjct: 366 TAQQIIHFLRTRAHP 380
>gi|339237219|ref|XP_003380164.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
gi|316977049|gb|EFV60220.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
Length = 674
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 157/292 (53%), Gaps = 5/292 (1%)
Query: 34 STQAERPTNFSSSMMKVFQ-RGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
S Q+E+ + + +V Q GL+ D + +LT GFQF+L D QLW + Y++
Sbjct: 156 SAQSEKSVSVETK--RVLQDSGLIQLCDSKM-QLTSDGFQFILYDRRQQLWTYLLHYLAQ 212
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
+++G D I +L+ AY+ L+E + I+ ++GLV Q+ R WF
Sbjct: 213 LEKKGSPVHDCIMLILQACLGSHRAAYSTENLTEAALNFIQHLREIGLVH-QRKRSAGWF 271
Query: 153 IPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
T L + L+ + SS+ KEGF++VETNFR+Y Y+ S L I+ F + Y+ PNL+
Sbjct: 272 YYTPLISVLTGLKSSSSSSKEGFLIVETNFRVYCYTDSVLDLAIVSTFCEPLYRFPNLVA 331
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
+ +ES+ AF+ I+AEQII +L NAH + + P++P V DQI+LWE + +R +
Sbjct: 332 CILNRESVRRAFQVNISAEQIIQYLFSNAHKNMQKQTPTIPSTVTDQIKLWEMERDRFKF 391
Query: 273 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFL 324
P Y F S + DYA+D LL E LVV A+ H +FL
Sbjct: 392 DPGVMYSNFFSDTDYITIRDYAKDLGVLLCEHEANRALVVSADGHEQSNQFL 443
>gi|156839389|ref|XP_001643386.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156113994|gb|EDO15528.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 504
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 162/315 (51%), Gaps = 55/315 (17%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N Q+W ++ +Y+ ++ +N D++ F+ L G+AY+ L
Sbjct: 185 KITNEGFQFLLQEVNLQIWTLLLQYLKMAETFRMNPVDVLHFIFMLGALEFGKAYSTEEL 244
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM--------------------- 163
S QK+M+KD D GL+ Q+ N F PT+LAT L+
Sbjct: 245 SATQKTMMKDMRDYGLI-FQKNSNTNVFYPTRLATMLTSDSRTVRNASSAMDSVLTQSKD 303
Query: 164 ---SLTDSSAR------------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
T SA ++G +VVETNF++Y+YS S L IL LF ++ +
Sbjct: 304 EPSGATSGSADVDEQVGTQGQNIQDGALVVETNFKLYSYSNSPLQIAILSLFVHLKTRFS 363
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVADR---------------MP 250
N++ G IT+ES+ NA NGITAEQII++L+ +AHP R+A+ +
Sbjct: 364 NMVTGQITRESIRNALSNGITAEQIIAYLETHAHPQMRRLAEERLKKKLELDQNSKETLQ 423
Query: 251 SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRL 310
+P V DQI+LW+ +L+R+ Y +F ++ ++ YA+D L+W+D +K +
Sbjct: 424 ILPPTVVDQIKLWQLELDRIISYEGSLYSDFDNKQEYDMLYSYAQDIGVLIWKDDRKRKF 483
Query: 311 VVKAEIHMHMREFLR 325
V E + + ++ +
Sbjct: 484 FVSKESNSQVLDYAK 498
>gi|268534706|ref|XP_002632484.1| Hypothetical protein CBG13719 [Caenorhabditis briggsae]
Length = 482
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 159/273 (58%), Gaps = 13/273 (4%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL------SFHVAGEAY 119
+T GFQFLL+ Q+W V EY+ +G + ++I L+++ F E Y
Sbjct: 193 ITTFGFQFLLLSPVKQMWTYVIEYLKLEISKGNDIVEVIEPLIQIVLLANRGFKAEKECY 252
Query: 120 NLN-TLSEIQKSMIKDFADLGLVKLQQGRKENWFIP---TKLATNLSMSLTDSSARKEGF 175
++ ++ Q ++ +LG++ +++ + +F+ T LATN ++ T S G
Sbjct: 253 QIDEQWTQPQHDLLNHLRELGVIFIRKRKDGVFFLTHLLTHLATNETIDDTSSEKASNGK 312
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
++VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIIS
Sbjct: 313 VIVETNFRVYAYTSSLLQLAIIALFTEMTYRFTDMSVGMITRESVRGALQHGITAAQIIS 372
Query: 236 FLQQNAHPR-VADRMP--SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 292
FL+ NAHP+ VA P +P V DQIRLWE + R+++ A+ Y F S D +
Sbjct: 373 FLRANAHPQCVATSGPVNCLPITVADQIRLWEDERRRMDLKDAYIYSHFESDDEYHGVVR 432
Query: 293 YARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
YA+++ LLW +P++ ++V E H +R++ +
Sbjct: 433 YAQERGILLWANPQQKLVIVNEEGHEAVRQWYK 465
>gi|46127843|ref|XP_388475.1| hypothetical protein FG08299.1 [Gibberella zeae PH-1]
gi|408390907|gb|EKJ70292.1| hypothetical protein FPSE_09509 [Fusarium pseudograminearum CS3096]
Length = 494
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 164/314 (52%), Gaps = 43/314 (13%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLELS 111
L+ RR A +T++GF FLL + NAQ+W ++ E + ++ G+ D++SFL L+
Sbjct: 183 LVDRRPSGAIGITQAGFTFLLQEANAQVWTLLLLWLEAMDVNKMAGLEATDMLSFLFVLA 242
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM-------- 163
G AY+ N L+E +K+M+ D GL+ + K + F PT+LAT L+
Sbjct: 243 SMELGRAYDTNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSSNSLRSI 301
Query: 164 ----------------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
S T SS + G +++ETN+R+YAY+ S L +L LF+
Sbjct: 302 SDGVAAATAAALQPGQSRAPGSSATGSSNEQRGSVIIETNYRIYAYTQSTLQIAVLALFT 361
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENV 256
K++ + P+++ G I+++S+ A GITAEQIIS+L +AH ++ + P +P V
Sbjct: 362 KLQMRFPDMVAGRISRQSIRQAINFGITAEQIISYLSAHAHDQMRRTASLNNKPVLPPTV 421
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAE 315
DQIRLW+ + R++ T + +F + A +A + L+W D K M K
Sbjct: 422 VDQIRLWQLENERMKTTGGFLFKDFEDHKEYMAVAGFAEEVGVLVWRNDVKGMFFASK-- 479
Query: 316 IHMHMREFLRGQNK 329
H +R++LR + K
Sbjct: 480 -HEQIRDYLRIRKK 492
>gi|425777809|gb|EKV15965.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum PHI26]
gi|425782577|gb|EKV20476.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum Pd1]
Length = 382
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 173/316 (54%), Gaps = 37/316 (11%)
Query: 42 NFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
N S + ++ Q G L +T+ GF F+L D N Q+W+I+ Y+ +++ G++
Sbjct: 69 NLSKGVKQLLQAGHLVEIRGNRVDITKDGFGFVLQDVNTQVWHILILYVESAEAIGMDSV 128
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL 161
+++SFL LS G +Y+ + ++ Q + D AD G+V Q+ F PT+LAT L
Sbjct: 129 EVLSFLFLLSSLELGSSYDKSHMTSNQLRTLADLADFGIV-YQEDADATHFYPTRLATTL 187
Query: 162 SMSLTDSSA------------------RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
+ +DSSA GFI++ETN+R+YAY++S L ++ LF+ +
Sbjct: 188 T---SDSSALSNPVTGSLTGPVGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNL 244
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV---------ADRMPS--V 252
+Y+ PNL+ G IT++S+ A E GITA+QIIS+L +AHP++ +P+ +
Sbjct: 245 KYRFPNLVTGKITRQSVRRAIEMGITADQIISYLLSHAHPQLRKHSAAQSNGKGIPASVL 304
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLV 311
P V DQIRLW+ + +R+ T + +F S ++A C YA + L+W+ D K+M V
Sbjct: 305 PPTVTDQIRLWQLERDRLRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFV 364
Query: 312 VKAEIHMHMREFLRGQ 327
+ H + FLR Q
Sbjct: 365 TR---HEQVAAFLRSQ 377
>gi|448100135|ref|XP_004199281.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359380703|emb|CCE82944.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 509
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 164/321 (51%), Gaps = 63/321 (19%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL D N Q+W ++ +Y+S +Q+ ++ D+++F+ L G++Y +++L
Sbjct: 186 KITNKGFQFLLQDVNVQIWTLLLQYLSLTQDLNMDPVDVLNFIFVLGCLELGKSYTVSSL 245
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSL------TDS 168
SE Q SM+ D D GL+ KE F PT+LAT L SM+L +S
Sbjct: 246 SETQISMLADLKDYGLIYQNHNDKER-FYPTRLATTLTSEAAALRTPSMALNQVVDTANS 304
Query: 169 SARKE-------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLY 221
A +E G I++ETNF++YAY+ S L IL LF ++ + PN++ G IT+ES+
Sbjct: 305 EATEEQMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIR 364
Query: 222 NAFENGITAEQIISFLQQNAHPRVAD---------------------------------- 247
A NGITA+QII FL+ +AH ++
Sbjct: 365 KALFNGITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDSQQLSVGEFGS 424
Query: 248 -----RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW 302
++ +P V DQI+LW+ +L+R++ + + +F S+ ++A +YA + LLW
Sbjct: 425 ASSYHKLEILPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALRNYASELGVLLW 484
Query: 303 EDPKKMRLVVKAEIHMHMREF 323
D + + V + + +F
Sbjct: 485 SDKNRKKFFVTKDGMSQVADF 505
>gi|448103836|ref|XP_004200137.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359381559|emb|CCE82018.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 512
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 63/321 (19%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL D N Q+W ++ +Y+S +Q+ ++ D+++F+ L G++Y +++L
Sbjct: 186 KITNKGFQFLLQDVNVQIWTLLLQYLSLTQDLNMDPVDVLNFIFVLGCLELGKSYTVSSL 245
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSL------TDS 168
SE Q SM+ D D GL+ KE F PT+LAT L SM+L +S
Sbjct: 246 SETQISMLADLKDYGLIYQNHNDKER-FYPTRLATTLTSEAAALRTPSMALNQVVDTANS 304
Query: 169 SARKE-------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLY 221
A +E G I++ETNF++YAY+ S L IL LF ++ + PN++ G IT+ES+
Sbjct: 305 EATEEQMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIR 364
Query: 222 NAFENGITAEQIISFLQQNAHPRVAD---------------------------------- 247
A NGITA+QII FL+ +AH ++
Sbjct: 365 KALFNGITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDNQQLSVGEFGS 424
Query: 248 -----RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW 302
++ +P V DQI+LW+ +L+R++ + + +F S+ ++A YA + LLW
Sbjct: 425 ANSYHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALRSYASELGVLLW 484
Query: 303 EDPKKMRLVVKAEIHMHMREF 323
D + + V + + +F
Sbjct: 485 SDKNRKKFFVTKDGMSQVADF 505
>gi|403217068|emb|CCK71563.1| hypothetical protein KNAG_0H01490 [Kazachstania naganishii CBS
8797]
Length = 519
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 162/325 (49%), Gaps = 63/325 (19%)
Query: 63 APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN 122
A ++T GFQFLL + N+Q+W ++ +Y+ S+ ++ D+++F+ L G+AY+
Sbjct: 189 AFKITNEGFQFLLQEINSQIWTLLLQYLKMSESLQMDAVDVLNFIFMLGALEVGKAYSTE 248
Query: 123 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLA-------------------TNLSM 163
LSE Q+ MIKD D G+V Q+ N F PT LA T LS
Sbjct: 249 GLSETQRIMIKDMRDYGIV-FQKNSTSNVFYPTSLAIMLTSDSKTVLRTASGAMNTVLSQ 307
Query: 164 SLTDSSAR-------------------------KEGFIVVETNFRMYAYSTSKLHCEILR 198
+ D+S+ ++G ++VETNF++Y+YS S L IL
Sbjct: 308 NKEDTSSTNKSATDKANNDTAELDQVGTQSQEVQDGVLIVETNFKVYSYSNSPLQIAILS 367
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 245
LF ++ + N++ G ITK S+ NA +NGITAEQII++L+ +AHP++
Sbjct: 368 LFVHLKSRFINMVTGQITKRSIINALDNGITAEQIIAYLETHAHPQMRRLAEAQLEKKRE 427
Query: 246 -----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
D + +P V DQI+LW+ + +RV Y +F S + YA+D +
Sbjct: 428 LDQNCKDPLQILPPTVVDQIKLWQLEKDRVMAFEGSLYSDFESNAEYNILKKYAQDIGVM 487
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLR 325
LW + KK +L V E + + ++ +
Sbjct: 488 LWSEDKKRKLFVSQEGNSQVLDYAK 512
>gi|255936123|ref|XP_002559088.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583708|emb|CAP91723.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 483
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 173/316 (54%), Gaps = 37/316 (11%)
Query: 42 NFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
N S + ++ Q G L +T+ GF F+L D N Q+W+I+ Y+ +++ G++
Sbjct: 170 NLSKGVKQLLQAGHLVEIRGNRVDITKDGFGFVLQDVNTQVWHILILYVESAEAIGMDSV 229
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL 161
+++SFL LS G +Y+ + ++ Q + D AD G+V Q+ F PT+LAT L
Sbjct: 230 EVLSFLFLLSSLELGSSYDKSHMTPNQLRTLMDLADFGIV-YQEHADATRFYPTRLATTL 288
Query: 162 SMSLTDSSA------------------RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
+ +DSSA GFI++ETN+R+YAY++S L ++ LF+ +
Sbjct: 289 T---SDSSALSNPVTGSLTGPAGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNL 345
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV---------ADRMPS--V 252
+Y+ PNL+ G IT++S+ A E GITA+QIIS+L +AHP++ +P+ +
Sbjct: 346 KYRFPNLVTGKITRQSVRRAIEMGITADQIISYLLSHAHPQLRKHSAAQPNGKGVPASVL 405
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLV 311
P V DQIRLW+ + +R+ T + +F S ++A C YA + L+W+ D K+M V
Sbjct: 406 PPTVTDQIRLWQLERDRLRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFV 465
Query: 312 VKAEIHMHMREFLRGQ 327
+ H + FLR Q
Sbjct: 466 TR---HEQVAAFLRSQ 478
>gi|45187599|ref|NP_983822.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|62901343|sp|Q75B51.1|TFB2_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|44982337|gb|AAS51646.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|374107034|gb|AEY95942.1| FADL274Wp [Ashbya gossypii FDAG1]
Length = 514
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 165/319 (51%), Gaps = 61/319 (19%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL D NAQ+W ++ +Y++ ++ ++ D+++ + + G+AY++ L
Sbjct: 194 KITNEGFQFLLQDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGL 253
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---MSLTDSSA--------RKE 173
SE QK+M++D D GLV Q+ + F PT+LAT L+ +S+ +S R E
Sbjct: 254 SETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAE 312
Query: 174 GF--------------------------IVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 207
G ++VETNF++Y+YS S L IL LF ++ +
Sbjct: 313 GVDGKVLNGTALGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRF 372
Query: 208 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVA---------------DRM 249
N++ G IT+ES+ A NGITA+QII++++ +AHP R+A D +
Sbjct: 373 QNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTL 432
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQI+LW+ +L+R+ + + +F + ++ YARD LLW D KK
Sbjct: 433 QVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKM 492
Query: 310 LVVKAE-----IHMHMREF 323
V E I H R+F
Sbjct: 493 FFVSKEGNAQVIDFHKRKF 511
>gi|171681598|ref|XP_001905742.1| hypothetical protein [Podospora anserina S mat+]
gi|170940758|emb|CAP66407.1| unnamed protein product [Podospora anserina S mat+]
Length = 540
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 170/313 (54%), Gaps = 52/313 (16%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNS-------QERG-------INQADLISFLLEL 110
+++E GF FLL + NAQ+W ++ ++ + +E+G I+ +++SFL L
Sbjct: 230 QISEHGFNFLLQEANAQVWTLLLLWLEAADRNKALAKEQGTDITGTAIDNVEMLSFLFML 289
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL-------SM 163
+ G AY+ + L+E +K+M+ AD GL+ + + R + ++ PT+LAT L S+
Sbjct: 290 ASLELGRAYDTSALTETRKNMLPALADFGLIYIDRDRPQQYY-PTRLATTLTSLSTMRSV 348
Query: 164 SLTDSSARKE---------------------GFIVVETNFRMYAYSTSKLHCEILRLFSK 202
S + +A K+ G IVVETN+R+YAY++S L IL+LF +
Sbjct: 349 SASIDAATKKTPGDAGSLGADSTPTAPADENGGIVVETNYRIYAYTSSPLQIAILKLFCR 408
Query: 203 VEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENVC 257
+ + PN++ +T+ES+ A + GITA QII +L +AHP++ A +P V
Sbjct: 409 LHMRFPNMVTARLTRESVQEAIKEGITANQIIDYLVAHAHPQMRRAAAARGTTVIPPTVM 468
Query: 258 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVV-KAEI 316
DQIRLW+ + R++ TP + +F S + + +YA + L+W+D +K V K E
Sbjct: 469 DQIRLWQLESQRMQKTPGFQFKDFESVEEYRQLAEYATEIGVLVWKDDRKGTFFVSKVE- 527
Query: 317 HMHMREFLRGQNK 329
+REFL+ + K
Sbjct: 528 --QIREFLKARKK 538
>gi|254573074|ref|XP_002493646.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|238033445|emb|CAY71467.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|328354526|emb|CCA40923.1| RNA polymerase II transcription factor B subunit 2 [Komagataella
pastoris CBS 7435]
Length = 547
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 154/297 (51%), Gaps = 43/297 (14%)
Query: 60 DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAY 119
D ++ ++T+ GFQFLL D NAQ+W ++ +Y+ S++ +N D+++F+ L G+ Y
Sbjct: 236 DLKSMKITQDGFQFLLQDINAQIWQLLLQYLRMSEKLMMNPVDVLNFIFMLGSLELGKQY 295
Query: 120 NLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSLTD-- 167
+ LS+ Q M++D D GL+ + K +F PT++AT L SMS+
Sbjct: 296 PVTLLSDTQVIMLEDLVDYGLIYYPE--KNRYFYPTRMATTLTSEKTTFKTASMSMNQVL 353
Query: 168 ---SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 224
+ G IV+ETNF++Y Y+TS L IL LF + + N++ G IT+ES+ A
Sbjct: 354 EGGPEVKDHGSIVLETNFKLYCYTTSPLQIAILNLFVHLRTRFANMVTGMITRESVREAL 413
Query: 225 ENGITAEQIISFLQQNAHPRVAD--------------------------RMPSVPENVCD 258
NGITA+QII +L+ +AH ++ ++ +P V D
Sbjct: 414 RNGITADQIIKYLETHAHSQMKKLAEEKLLKKLEFDSNATETQQIGSQVKLEVIPPTVVD 473
Query: 259 QIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
QI+LW+ +++R++ + +F + FE +YA + +LW D K + V E
Sbjct: 474 QIKLWQLEMDRLQTFAGFLFKDFANAQEFEQLANYADEVGVMLWRDDDKRKFFVTEE 530
>gi|344229873|gb|EGV61758.1| transcription factor Tfb2 [Candida tenuis ATCC 10573]
Length = 498
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 171/326 (52%), Gaps = 56/326 (17%)
Query: 44 SSSMMKVFQRGLLSRRDKEAP---RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQ 100
S S++++ + G L + + ++T GFQFLL D NAQ+W ++ +Y+ + E ++
Sbjct: 162 SRSVLRLLKSGGLMEGNSDYAQELKITNKGFQFLLQDINAQIWTLLLQYLDLTLELQMDA 221
Query: 101 ADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATN 160
D+++F+ L G++Y+++ LS+ Q M+ D D GLV Q+ N F PT+LAT
Sbjct: 222 VDVLNFIFLLGSLELGKSYSVSALSDTQIEMLSDLRDFGLV-YQRSATSNKFYPTRLATT 280
Query: 161 L----------SMSL---------TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
L SM++ TDS R+E I++ETNF++Y+Y+ S L IL LF
Sbjct: 281 LTSDSNSLQTPSMAIDKANSGIDSTDSKQRQES-IIIETNFKVYSYTQSPLEIAILNLFV 339
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA--------------- 246
+ + N++ G IT+ES+ NA NGITA Q+I FL+ +AHP++
Sbjct: 340 HLRTRFANMVTGQITRESIRNALYNGITAGQVIKFLETHAHPQMKMLAQEKLDKKIEFDA 399
Query: 247 -----------------DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 289
++ +P NV DQI+LW+ +L+R++ + + EF ++ +E+
Sbjct: 400 SNNINTATGKSTDAPMQHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFREFNNQIDYES 459
Query: 290 ACDYARDQSGLLWEDPKKMRLVVKAE 315
+YA + L+W D KK V E
Sbjct: 460 LRNYASEIGVLVWSDDKKRTCFVTKE 485
>gi|50291141|ref|XP_448003.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901305|sp|Q6FP41.1|TFB2_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49527314|emb|CAG60954.1| unnamed protein product [Candida glabrata]
Length = 504
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 161/314 (51%), Gaps = 51/314 (16%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL + N+Q+W ++ +Y+ ++ ++ +++F+ L G+AY+ LS
Sbjct: 188 ITNEGFQFLLQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLS 247
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS----------------MSLTDSS 169
E Q M+ D D GLV Q+ N F PT+LA L+ ++ D +
Sbjct: 248 ETQLKMLLDMRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDA 306
Query: 170 AR----------------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
A+ ++G +++ETNF++Y+Y S L IL LF ++ + N++ G
Sbjct: 307 AKSTDDKYDSLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAG 366
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPEN 255
IT+ES+ A NGITA+Q+I++L+ +AHP++ D + +P
Sbjct: 367 QITRESIRRALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPT 426
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
V DQI+LW+ +L+RV Y +F + F C YA+D LLW+D +K +L V E
Sbjct: 427 VVDQIKLWQLELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSRE 486
Query: 316 IHMHMREFLRGQNK 329
+ + E+ + + K
Sbjct: 487 GNAQVLEYAKRKIK 500
>gi|365986883|ref|XP_003670273.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
gi|343769043|emb|CCD25030.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
Length = 522
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 158/328 (48%), Gaps = 68/328 (20%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ S+ ++ D+++F+ L G+ Y+++ L
Sbjct: 187 KITNEGFQFLLQELNSQLWTLLLQYLKLSETLNMDPVDVLNFIFMLGALEVGKGYSIDGL 246
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---------------------- 162
SE QK M+KD D GLV Q+ F PT LA L+
Sbjct: 247 SETQKIMLKDMRDYGLV-FQKVSNSKTFYPTNLALMLTSDTKSIVRTASGAIESVLNENR 305
Query: 163 ----------------------MSLTDSSARK-----EGFIVVETNFRMYAYSTSKLHCE 195
M D K +G ++VETNF++Y+YS S L
Sbjct: 306 SGSNANENGYEPGTKKKNENTIMGTIDQVGMKNQDVPDGSLIVETNFKLYSYSNSPLQIA 365
Query: 196 ILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV---------- 245
IL LF ++++ N++ G IT+ES+ A NGITAEQII++L+ +AHP++
Sbjct: 366 ILSLFVHLKFRFVNMVTGQITRESIRRALINGITAEQIIAYLETHAHPQMRRLAEEKLEK 425
Query: 246 --------ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQ 297
D + +P V DQIRLW+ +L+RV Y +F + + YA+D
Sbjct: 426 KLELDANCKDSLQILPPTVVDQIRLWQLELDRVIAYEGSLYSDFENNTEYTTLYKYAQDI 485
Query: 298 SGLLWEDPKKMRLVVKAEIHMHMREFLR 325
LLW+D KK + V E + + ++ +
Sbjct: 486 GVLLWKDDKKRKFFVSKEGNSQVLDYAK 513
>gi|410082501|ref|XP_003958829.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
gi|372465418|emb|CCF59694.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
Length = 514
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 168/333 (50%), Gaps = 63/333 (18%)
Query: 55 LLSRRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
L+ DK ++T GFQFLL + N+Q+W ++ +Y+ S+ ++ ++++F+ L
Sbjct: 176 LMEEADKTGTLKITNEGFQFLLQEINSQIWTLLLQYLKMSESLQMDPVEVLNFIFMLGAL 235
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM---------- 163
G+AY+++ L+E QK+M++DF D G++ Q+ F PT LA L+
Sbjct: 236 EIGKAYSIDGLTETQKTMLRDFRDYGII-FQKNLTSKSFYPTNLAIMLTSDTRSILRTAS 294
Query: 164 ---------------------SLTDSSAR------------KEGFIVVETNFRMYAYSTS 190
++T+ +A ++G +++ETNF++Y+YS S
Sbjct: 295 GAMDSVLRQNKEDSKKQTSGDNVTEDTANDIEQIGLENQEGRDGSLIIETNFKLYSYSNS 354
Query: 191 KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----- 245
L IL LF ++ + N++ G IT+ES+ A NGITA+QII++L+ +AHPR+
Sbjct: 355 PLQIAILSLFVHLKSRFVNMVTGQITRESIRRALVNGITADQIIAYLETHAHPRMRRLAE 414
Query: 246 -------------ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 292
D + +P V DQI+LW+ +L+RV Y +F + +
Sbjct: 415 EKLEKKLELDPNSKDTLQILPPTVVDQIKLWQLELDRVITYDGSLYSDFENSTEYNMLSK 474
Query: 293 YARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
YA+D L+W+D KK + V E + + ++ +
Sbjct: 475 YAQDIGVLIWKDDKKRKFFVSKEGNTQVLDYAK 507
>gi|320581720|gb|EFW95939.1| TFIIH basal transcription factor complex subunit 2 [Ogataea
parapolymorpha DL-1]
Length = 544
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 40/290 (13%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T++GFQFLL D N+Q+W ++ +Y+ S++ +N ++++F+ L G+ Y ++ LS
Sbjct: 238 ITQNGFQFLLQDINSQIWTLLLQYLKMSEKLMMNPVEVLNFIFMLGSLELGQGYPVDPLS 297
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD---------------SSA 170
+ QK M+ D D GL+ + F PT+LAT L+ T+ ++
Sbjct: 298 DTQKIMLDDLIDYGLIYTPSKTNKKIFYPTRLATTLTSEHTNFKTSAAVIDQEITNSKNS 357
Query: 171 RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITA 230
+G IVVETNF++Y Y++S L IL LF ++ + N++ G IT+ES+ A NGITA
Sbjct: 358 NNQGTIVVETNFKIYCYTSSPLQIAILNLFVHLKARFANMVTGVITRESVRRALINGITA 417
Query: 231 EQIISFLQQNAHP----RVADRMPS---------------------VPENVCDQIRLWES 265
+Q+I++L +AHP + D++ +P V DQI+LW+
Sbjct: 418 DQMINYLGSHAHPWMVKQAEDKLARKLELESSIGNAAGQRQIDLEILPPTVVDQIKLWQL 477
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
+L+R++ + Y +F + FE Y + ++W+D + R V E
Sbjct: 478 ELDRIQSFKGYLYKDFSTDLEFEKLLTYGEEIGVIVWKDRARKRFFVTQE 527
>gi|313224499|emb|CBY20289.1| unnamed protein product [Oikopleura dioica]
Length = 411
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 162/262 (61%), Gaps = 6/262 (2%)
Query: 68 ESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNL-NTLSE 126
E FQFLL+D ++Q+WY++ +Y+ Q+ G++ ++++F+L+L + G Y N+ +E
Sbjct: 145 EKRFQFLLLDRSSQVWYLLVQYLGYVQKLGLSLVNVLAFVLQLGYCSFGTDYPCDNSNNE 204
Query: 127 IQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS---LTDSSARKEGFIVVETNFR 183
I + +I+ F ++GL+ ++ KE F PT+LA ++S++ S +E FI+VETN+R
Sbjct: 205 ISR-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSISIAGGKKASSEDVQEQFILVETNYR 262
Query: 184 MYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 243
+YAY+ S+LH ++ LF++V+Y+ P +IV ++++S+ + + GI+AEQI+++L+ +AHP
Sbjct: 263 IYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRDSIQQSADYGISAEQILNYLRSSAHP 322
Query: 244 RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE 303
VP+ V D I LW + R++ Y +F ++ FE YA+D L+W
Sbjct: 323 IARKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYHQFLDQEAFEMLKSYAQDIRALVWA 382
Query: 304 DPKKMRLVVKAEIHMHMREFLR 325
+ ++ +VV H ++ + +
Sbjct: 383 NDERRFMVVAPWSHDQIKSYYK 404
>gi|313245784|emb|CBY34779.1| unnamed protein product [Oikopleura dioica]
Length = 456
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 162/262 (61%), Gaps = 6/262 (2%)
Query: 68 ESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNL-NTLSE 126
E FQFLL+D ++Q+WY++ +Y+ Q+ G++ ++++F+L+L + G Y N+ +E
Sbjct: 190 EKRFQFLLLDRSSQVWYLLVQYLGYVQKLGLSLVNVLAFVLQLGYCSFGTDYPCDNSNNE 249
Query: 127 IQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS---LTDSSARKEGFIVVETNFR 183
I + +I+ F ++GL+ ++ KE F PT+LA ++S++ S +E FI+VETN+R
Sbjct: 250 ISR-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSISIAGGKKASSEDVQEQFILVETNYR 307
Query: 184 MYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 243
+YAY+ S+LH ++ LF++V+Y+ P +IV ++++S+ + + GI+AEQI+++L+ +AHP
Sbjct: 308 IYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRDSIQQSADYGISAEQILNYLRSSAHP 367
Query: 244 RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE 303
VP+ V D I LW + R++ Y +F ++ FE YA+D L+W
Sbjct: 368 IARKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYHQFLDQEAFEMLKSYAQDIRALVWA 427
Query: 304 DPKKMRLVVKAEIHMHMREFLR 325
+ ++ +VV H ++ + +
Sbjct: 428 NDERRFMVVAPWSHDQIKSYYK 449
>gi|444320663|ref|XP_004180988.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
gi|387514031|emb|CCH61469.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
Length = 518
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 156/305 (51%), Gaps = 55/305 (18%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL ++N+Q+W ++ +Y+ ++ ++ D+++F+ L G+AY++++L
Sbjct: 185 KITNEGFQFLLQESNSQIWTLLLQYLKLTETLHMDPVDVLNFIFMLGALEFGKAYSISSL 244
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL------------------- 165
SE QK M+KD D GL+ Q+ N F PT +AT L+
Sbjct: 245 SETQKIMLKDMRDYGLI-FQKNSNANVFYPTSMATMLTSDARNVRTASGAIDHILQRSQE 303
Query: 166 -----------------TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
+++ A +G +++ETNF++Y+YS S L +L LF ++ +
Sbjct: 304 TNKNSNNDDDEDVDQVGSNTQATADGALIIETNFKLYSYSNSPLQIAVLSLFVHLKTRFS 363
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMP 250
N++ G IT++S+ A NGITAEQII++L ++HP++ D +
Sbjct: 364 NMVTGQITRDSIRRALRNGITAEQIIAYLLTHSHPQMRRLAEGNLEKKLELDPNAKDSLQ 423
Query: 251 SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRL 310
+P V DQI+LW+ +L+R+ Y +F + + YA D LLW++ KK +
Sbjct: 424 ILPPTVVDQIKLWQLELDRIISHEGSLYSDFENNQEYNLLSTYAEDIGVLLWKNDKKRKF 483
Query: 311 VVKAE 315
V E
Sbjct: 484 FVLKE 488
>gi|378729002|gb|EHY55461.1| transcription initiation factor TFIIH subunit H4 [Exophiala
dermatitidis NIH/UT8656]
Length = 508
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 158/296 (53%), Gaps = 42/296 (14%)
Query: 62 EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNL 121
+A ++T+ GF F+L D N Q+W ++ Y+ N++ +++ D++SFL +S G AY+
Sbjct: 198 QAAKITKEGFAFVLQDINTQIWALLFLYVDNAEVFEMDKVDVLSFLFFVSSLELGLAYST 257
Query: 122 NTLSEIQKSMIKDFADLGLVK---LQQGRKENWFIPTKLA---------------TNLSM 163
L E Q + D G+V L+ G ++F PT+LA T L+
Sbjct: 258 APLDETQSRCLSDLVSFGIVYQPLLEDGTPVDYFYPTRLATTLTSDSSTTLSATNTTLAS 317
Query: 164 SLTDSSARKEG---------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
SL+ SA FI+VETN+R+YAY++S L +L LF + + PNL+ G
Sbjct: 318 SLSTKSAHSSSSSSAGAGKGFIIVETNYRLYAYTSSPLQIALLSLFVNLRSRHPNLVTGK 377
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHP-----------RVADR---MPSVPENVCDQI 260
++K S+ A + GITA+QIIS+L +AHP R AD +P +P + DQI
Sbjct: 378 MSKSSVQRAIQAGITADQIISYLTSHAHPQMRRHAQAEQARNADPNRVVPILPATILDQI 437
Query: 261 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAE 315
LW+ + +R+ TP +FP++ +EA C YA + L+W+ D K+M V + E
Sbjct: 438 HLWQLERDRMTTTPGFLLKDFPNQADYEAPCRYADEIGVLVWKNDKKRMFFVNRIE 493
>gi|164425579|ref|XP_960485.2| hypothetical protein NCU05523 [Neurospora crassa OR74A]
gi|157070982|gb|EAA31249.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 475
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 46/306 (15%)
Query: 66 LTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLELSFHVAGEAYNLN 122
+T++GF FLL ++NAQ+W ++ E ++ + G++ D++SFL LS G AY+ +
Sbjct: 172 ITQAGFTFLLQESNAQVWTLLLLWLEAADHTADSGMDSIDMLSFLFMLSSLELGTAYDTS 231
Query: 123 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSLTDSSARK 172
L+E +++M+ D GL+ R F PT+LAT L S + T ++A
Sbjct: 232 ALTETRRNMLPSLVDFGLIYFP--RDTRQFFPTRLATTLTSTASALRTVSSAFTAATANP 289
Query: 173 EG------------------------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
G I++ETN+R+YAY+TS L +L LF ++ + P
Sbjct: 290 SGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQIAVLALFCQLNMRFP 349
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM-----PSVPENVCDQIRLW 263
N++ G +T++S+ A GITA+QIIS+L +AH ++ P +P V DQIRLW
Sbjct: 350 NMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTGKPVLPPTVVDQIRLW 409
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
+ + R++ T + +F S + + A YA + L+W++ K R + A H +R++
Sbjct: 410 QLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHEQLRDY 467
Query: 324 LRGQNK 329
L+ + K
Sbjct: 468 LKSRKK 473
>gi|336466164|gb|EGO54329.1| hypothetical protein NEUTE1DRAFT_87562 [Neurospora tetrasperma FGSC
2508]
gi|350286986|gb|EGZ68233.1| transcription factor Tfb2 [Neurospora tetrasperma FGSC 2509]
Length = 475
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 46/306 (15%)
Query: 66 LTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLELSFHVAGEAYNLN 122
+T++GF FLL ++NAQ+W ++ E ++ + G++ D++SFL LS G AY+ +
Sbjct: 172 ITQAGFTFLLQESNAQVWTLLLLWLEAADHTADSGMDSIDMLSFLFMLSSLELGTAYDTS 231
Query: 123 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSLTDSSARK 172
L+E +++M+ D GL+ R F PT+LAT L S + T ++A
Sbjct: 232 ALTETRRNMLPSLVDFGLIYFP--RDTRQFFPTRLATTLTSTASALRTVSSAFTAATANP 289
Query: 173 EG------------------------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
G I++ETN+R+YAY+TS L +L LF ++ + P
Sbjct: 290 SGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQIAVLALFCQLNMRFP 349
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM-----PSVPENVCDQIRLW 263
N++ G +T++S+ A GITA+QIIS+L +AH ++ P +P V DQIRLW
Sbjct: 350 NMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTGKPVLPPTVVDQIRLW 409
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
+ + R++ T + +F S + + A YA + L+W++ K R + A H +R++
Sbjct: 410 QLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHEQLRDY 467
Query: 324 LRGQNK 329
L+ + K
Sbjct: 468 LKSRKK 473
>gi|255713706|ref|XP_002553135.1| KLTH0D09790p [Lachancea thermotolerans]
gi|238934515|emb|CAR22697.1| KLTH0D09790p [Lachancea thermotolerans CBS 6340]
Length = 506
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 158/308 (51%), Gaps = 58/308 (18%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL D NAQ+W ++ +Y+ ++ ++ D+++F+ L G+AY+ L
Sbjct: 184 QITNEGFQFLLQDANAQIWALLLQYLRLAETLQMDPVDVLNFIFMLGALELGKAYSDTNL 243
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKL----------------ATNLSMSLTDS 168
S+ QK M++D D GLV Q+ + F PT+L A N +S S
Sbjct: 244 SDTQKIMLQDMRDYGLV-FQKASNTHKFYPTRLTAMLTSDTSSIRSASGAMNSVLSQGTS 302
Query: 169 SARKE-----------------------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
S+++E G +++ETNF++Y+YS S L +L LF ++
Sbjct: 303 SSKEEAAAVAETDEETAQVGGTTQNIPDGAVILETNFKLYSYSNSPLQIAVLSLFVHLKS 362
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVADR-------------- 248
+ N++ G IT+ES+ A NGITA+QII++++ +AHP R+A++
Sbjct: 363 RFSNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAEQTLDKKMELDPNCNE 422
Query: 249 -MPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKK 307
+ +P V DQI+LW+ +L+R+ + + +F + + YA+D LLW D KK
Sbjct: 423 GLQILPPTVVDQIKLWQLELDRIISYDGYLFTDFENFQEYNMLSSYAKDIGVLLWSDDKK 482
Query: 308 MRLVVKAE 315
R V E
Sbjct: 483 KRFFVSQE 490
>gi|452839401|gb|EME41340.1| hypothetical protein DOTSEDRAFT_156149 [Dothistroma septosporum
NZE10]
Length = 497
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 143/263 (54%), Gaps = 29/263 (11%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
++ +GF FLL D NAQ+W ++ Y+ S ++ +++SFL L G +Y+ L+
Sbjct: 193 ISTTGFTFLLQDVNAQVWSLLIVYLEVSSSLRMDPVEVLSFLFTLGSLELGISYSTANLT 252
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------------------SM 163
Q+ M+ D AD GL+ + ++ PT+LAT L S
Sbjct: 253 PTQQQMLDDLADFGLIYRRTPDSHRYY-PTRLATTLTSDAPALTNNSLMKTTVMTGDPST 311
Query: 164 SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
L S++ ++GFI++ETN+R+YAY++S L IL LF+ + + PNLI ITK S NA
Sbjct: 312 DLAASASDEKGFIILETNYRLYAYTSSPLLISILSLFASLNTRYPNLITAKITKASTQNA 371
Query: 224 FENGITAEQIISFLQQNAHP-----RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYY 278
GIT++QII +L +AHP A+ P +P V DQI+LW+ + R+E T +
Sbjct: 372 IAAGITSDQIIDYLTTHAHPVLRRQAAANDAPILPPTVVDQIKLWQMEGERMEATKGYLI 431
Query: 279 DEFPSRDVFEAACDYARDQSGLL 301
+ S++ ++ A +YA D G+L
Sbjct: 432 RDIGSQEEYDKAVNYA-DAIGVL 453
>gi|452977455|gb|EME77221.1| hypothetical protein MYCFIDRAFT_146475 [Pseudocercospora fijiensis
CIRAD86]
Length = 476
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 147/267 (55%), Gaps = 31/267 (11%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQ-ERGINQADLISFLLELSFHVAGEAYNLNTL 124
+T GF FLL D NAQ+W ++ Y+ S+ E ++ D++SFL L G +Y+ + L
Sbjct: 175 ITTDGFTFLLQDVNAQIWSLLIVYLQTSETECFMDPVDVLSFLFTLGSLELGTSYSTSNL 234
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD----------------- 167
++ Q M++D +DLGL+ + + + PT+LAT L+
Sbjct: 235 TKTQLQMLEDLSDLGLIF--HPEQSDRYYPTRLATTLTSDAPALLNSSHTSTTTTVSASS 292
Query: 168 -----SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYN 222
+SA ++GFI++ETN+R+YAY+ S L IL LF+ + + PNL+ ITK S+
Sbjct: 293 NDDLAASANEKGFIILETNYRLYAYTNSPLLISILSLFASLHTRYPNLVTAKITKTSVQA 352
Query: 223 AFENGITAEQIISFLQQNAHP---RVAD--RMPSVPENVCDQIRLWESDLNRVEMTPAHY 277
A +GIT+ QIIS+LQ +AHP R A P +P V DQIRLW+ + R+ T +
Sbjct: 353 AISSGITSNQIISYLQTHAHPILRRTASMHNAPILPPTVVDQIRLWQIEGERMTSTKGYL 412
Query: 278 YDEFPSRDVFEAACDYARDQSGLLWED 304
E S++ +E A YA + G+L +D
Sbjct: 413 IREVGSKEDYEKAVQYA-EALGILVKD 438
>gi|342884444|gb|EGU84659.1| hypothetical protein FOXB_04847 [Fusarium oxysporum Fo5176]
Length = 496
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 166/314 (52%), Gaps = 43/314 (13%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLELS 111
L+ R+ + +T++GF FLL + NAQ+W ++ E + ++ G+ D++SFL L+
Sbjct: 185 LVDRKASGSVGITQAGFTFLLQEANAQVWTLLLLWLEAMEVNKMAGLEATDMLSFLFVLA 244
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM-------- 163
G AY+ N L+E +K+M+ D GL+ + K + F PT+LAT L+
Sbjct: 245 SMELGRAYDTNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSSNSLRSI 303
Query: 164 ----------------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
S+T ++ + G +++ETN+R+YAY+ S L +L LF+
Sbjct: 304 SDGVAAATAAALQPGQSGAPGGSVTAANTEQRGSVIIETNYRIYAYTQSTLQIAVLALFT 363
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENV 256
K+ + P+++ G I+++S+ A + GITAEQIIS+L +AH ++ + P +P V
Sbjct: 364 KLAMRFPDMVAGRISRQSIRQAIQFGITAEQIISYLSAHAHDQMHRTAALNNKPVLPPTV 423
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAE 315
DQIRLW+ + R++ T + F ++ +A + L+W+ D ++M K
Sbjct: 424 VDQIRLWQLENERMKTTSGFLFKSFEDDREYKDIARFAEEVGVLVWKNDARQMFFASK-- 481
Query: 316 IHMHMREFLRGQNK 329
H +R++++ + K
Sbjct: 482 -HEQIRDYMKIRKK 494
>gi|254584224|ref|XP_002497680.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
gi|238940573|emb|CAR28747.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
Length = 509
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 154/309 (49%), Gaps = 59/309 (19%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ ++ ++ D+++F+ L + Y+ N L
Sbjct: 186 KITNEGFQFLLQEVNSQLWALLLQYLKMTEMLQMDPVDILNFIFMLGALEFSKPYSTNGL 245
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---MSLTDSSAR---------- 171
SE QK M+KD D GLV Q N F PT+LA+ L+ S+ +S
Sbjct: 246 SETQKVMLKDMRDYGLV-FQMNSNANVFYPTRLASMLTSDPKSIRGASGAMDSVLKQNKE 304
Query: 172 ---------------------------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
++G ++VETNF++Y+YS S L IL LF ++
Sbjct: 305 DVLNKSGGAGANADDDADEIGSEGQNMQDGALIVETNFKLYSYSNSPLQIAILSLFVHMK 364
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------A 246
+ N++ G +T+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 365 SRFSNMVTGQLTRESIRQALLNGITADQIIAYLETHAHPQMRRMAEEQLEKRLELDPNSK 424
Query: 247 DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPK 306
D + +P V DQI+LW+ +L+R+ Y +F + F YA+D L+W+D +
Sbjct: 425 DPLQILPPTVVDQIKLWQLELDRIISFEGSLYSDFENHQEFTLLSSYAQDIGVLIWKDDR 484
Query: 307 KMRLVVKAE 315
K + V E
Sbjct: 485 KKKFFVSKE 493
>gi|449296697|gb|EMC92716.1| hypothetical protein BAUCODRAFT_259506 [Baudoinia compniacensis
UAMH 10762]
Length = 489
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 159/294 (54%), Gaps = 32/294 (10%)
Query: 32 GSSTQAERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
G ST A S+ ++ Q+G +S R +EA +T+ GF FLL + NAQ+W ++ Y+
Sbjct: 166 GGSTDA-----ISAGTKQLLQKGEFVSVRGREA-HITQRGFTFLLQEINAQIWTLLIVYL 219
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
S ++ D++SFL L G +Y+ L+ Q+ M+ D +D GLV ++ E
Sbjct: 220 EVSGALHMDPVDVLSFLFTLGSLELGISYSTTNLTPTQQQMLDDLSDFGLV-YRRSNDEA 278
Query: 151 WFIPTKLATNLSMSLT-----------------------DSSARKEGFIVVETNFRMYAY 187
+ PT+LAT L+ +SA ++G+I++ETN+R+YAY
Sbjct: 279 RYYPTRLATTLTSDAPALPNTSLTSTTSTTTLASSSTDPSASANEKGYIILETNYRLYAY 338
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD 247
++S L IL LF+ ++ + PNLI +TK S+ +A +GIT++QII++L +AHP +
Sbjct: 339 TSSPLPITILSLFATLKTRYPNLITAKLTKSSIQSAIASGITSDQIITYLTTHAHPILRR 398
Query: 248 RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
+ P +P V DQIRLW+ + R+ + + + ++ A YA D G+L
Sbjct: 399 QNPVLPPTVVDQIRLWQIEGERMTAWKGFLIRDVGTAEEYDKAVQYA-DALGVL 451
>gi|159474228|ref|XP_001695231.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276165|gb|EDP01939.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 9/255 (3%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQE-RGINQADLISFLLELSFHVAGEAYNLNTL 124
+T+ F +LL + QLW ++REYIS ++ G A +SFLL+L F G+ L
Sbjct: 181 VTQRSFHWLLQPGDRQLWAVLREYISGAEAASGDELAHTLSFLLQLGFRRVGQPCAWAEL 240
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARK--------EGFI 176
++ M A LG++ + QG LA + ++A + F+
Sbjct: 241 RPPEQRMAAHLAQLGVLAVFQGSAGAAGSGGALAARGGGAGGAAAAAAMDGGGAGSDAFV 300
Query: 177 VVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 236
+VE+N+R+Y Y+ S + +L LF K E LPNL VGAI ++S+ A GITA++++++
Sbjct: 301 IVESNYRVYVYTRSPVTIAVLELFVKREALLPNLFVGAIRRDSILAALARGITADELVAY 360
Query: 237 LQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 296
L HP +A R P VPE V DQIRLWE+ +NR++ PA Y+ SR ++E A AR
Sbjct: 361 LSARPHPSIAARCPVVPEVVSDQIRLWEASMNRLQAHPAVLYENMESRQLYERAVAAARA 420
Query: 297 QSGLLWEDPKKMRLV 311
L WED +MR V
Sbjct: 421 AGTLQWEDGARMRFV 435
>gi|406604717|emb|CCH43852.1| RNA polymerase II transcription factor B subunit 2 [Wickerhamomyces
ciferrii]
Length = 488
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 156/303 (51%), Gaps = 42/303 (13%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GL+ + + +T GFQFLL D NAQLW ++ +Y+ ++ ++ D+++F+ L
Sbjct: 170 GLMEGKSVKDMLITNEGFQFLLQDVNAQLWTLLLQYLRMAESLQMDPVDVLNFIFMLGSL 229
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM---------- 163
G+ Y+L+ LSE Q +M+ D D GL+ Q+ F PT+LAT L+
Sbjct: 230 ELGKDYSLSALSETQVNMLGDLRDYGLI-YQRKSTSRRFYPTRLATTLTSDTTSLRSASS 288
Query: 164 ------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
+ T ++ G I++ETNF++YAY+ S L IL LF ++ + NL+
Sbjct: 289 AMNKVIENAKDSAYTPTNIENSGTIIIETNFKVYAYTNSPLQIAILNLFVHLKARFSNLV 348
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRV-------------------ADRMPSV 252
G IT+ES+ A +GIT+EQIIS+L+ +AHP++ +++ +
Sbjct: 349 TGQITRESIRKALVSGITSEQIISYLESHAHPQLRRAAEEELNKKNGFESNNHGEKIQIL 408
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVV 312
+ DQI+LW+ +L+R+ + + +F S ++ Y+ + LLW D K + V
Sbjct: 409 QPTIADQIKLWQLELDRIMSFDGYLFTDFSSDQEYQVLSKYSEEIGVLLWNDSSKKKFFV 468
Query: 313 KAE 315
E
Sbjct: 469 TKE 471
>gi|302917488|ref|XP_003052448.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733388|gb|EEU46735.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 496
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 162/314 (51%), Gaps = 43/314 (13%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLELS 111
L+ R+ +T++GF FLL + NAQ+W ++ E + ++ G+ D++SFL L+
Sbjct: 185 LVDRKPNGMVGITQAGFTFLLQEANAQVWTLLLLWLEAMDVNKGAGLEATDMLSFLFVLA 244
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS------L 165
G AY+ N L+E +K+M+ D GL+ + K + F PT+LAT L+ S +
Sbjct: 245 SMELGRAYDTNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSGNSLRSI 303
Query: 166 TDS------------------------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
+D + G +++ETN+R+YAY+ S L +L LFS
Sbjct: 304 SDGVAAATAAALQPGQSGGSGGSTTGSGQEQRGSVIIETNYRIYAYTQSTLQIAVLALFS 363
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENV 256
K+ + P+++ G ++++S+ A GITA+QIIS+L +AH ++ + P +P V
Sbjct: 364 KLSMRFPDMVAGRLSRQSIRQAINFGITADQIISYLAAHAHDQMHRTAALNNKPVLPPTV 423
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAE 315
DQIRLW+ + R++ T + +F + A +A + L+W D K M K
Sbjct: 424 VDQIRLWQLENERMKTTSGFLFKDFEDHKEYMAVAGFAEEVGVLVWRNDVKGMFFASK-- 481
Query: 316 IHMHMREFLRGQNK 329
H +R++LR + K
Sbjct: 482 -HEQIRDYLRIRKK 494
>gi|326435722|gb|EGD81292.1| hypothetical protein PTSG_11329 [Salpingoeca sp. ATCC 50818]
Length = 545
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 148/269 (55%), Gaps = 9/269 (3%)
Query: 50 VFQRGLLS-RRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLL 108
++Q L++ R D + ++ GFQFLL D QLW+ V +++ Q GI+ D + F+
Sbjct: 165 LYQSHLMTWREDVQDFDISSLGFQFLLQDRRTQLWFYVIKFLQTCQNEGIDIEDALGFVF 224
Query: 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL--SMSLT 166
+++ G Y L++ + +++ F+ +GL + +K + PT+LA L S +L
Sbjct: 225 RVAYTTFGNYYPTEVLNKTEHLVLRHFSKIGLC-YHRKKKSKQYYPTRLALALRTSSALV 283
Query: 167 DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFEN 226
A + GF+V+ETNFR+YAY+ S L +L+LF+K Y+LP ++V +IT+ S+ A
Sbjct: 284 AKDAMRCGFLVIETNFRIYAYTKSDLKISLLKLFAKPLYKLPTMLVASITRSSVRQAMAQ 343
Query: 227 GITAEQIISFLQQNAHPRVADRMPS----VPENVCDQIRLWESDLNRVEMTPAHYYDEFP 282
GITA QI+ FL+ + R+ + S VP V DQI LWE + +R+ T + P
Sbjct: 344 GITARQILHFLKVHCSSRMRHQPHSVFSPVPPTVSDQILLWEQETSRLSKTEGVLFRHLP 403
Query: 283 SRDVFEAACDYARDQSGLLWEDPKKMRLV 311
+ +F + +++ +W D K ++
Sbjct: 404 -KPIFPKLLAFVKERQACIWYDETKRAII 431
>gi|405952750|gb|EKC20525.1| General transcription factor IIH subunit 4 [Crassostrea gigas]
Length = 380
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 138/268 (51%), Gaps = 47/268 (17%)
Query: 64 PRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNT 123
P +T +GFQFLLMD +Q+WY + +Y+ + RG++ D +SFL +LSF G+
Sbjct: 155 PSITPAGFQFLLMDIGSQVWYFMLQYLDTVEARGMDLIDCLSFLFQLSFSTLGK------ 208
Query: 124 LSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD--SSARKEGFIVVETN 181
RK + PT+LA NL+ +D S + G+++VETN
Sbjct: 209 -----------------------RKIQRYYPTRLAINLAAGQSDFTSVGKNTGYLMVETN 245
Query: 182 FRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 241
+R+YAY+ S L ++ LF ++ Y+ P VG +T+ S+ +A GITA+Q
Sbjct: 246 YRVYAYTDSPLQVALVALFCEMLYRFPTFSVGNLTRVSVRDALIRGITADQT-------- 297
Query: 242 HPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
P +P V DQ+RLWE + +R + YD+F S++ FE DYA+D LL
Sbjct: 298 --------PVIPSTVTDQVRLWELERDRFKFMEGVLYDQFLSQNDFELLRDYAKDLGVLL 349
Query: 302 WEDPKKMRLVVKAEIHMHMREFLRGQNK 329
W++ K +VV H ++ + + Q +
Sbjct: 350 WDNAIKRVMVVTKGGHDDVKRYWKRQKQ 377
>gi|353231086|emb|CCD77504.1| putative tfiih, polypeptide [Schistosoma mansoni]
Length = 486
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 148/297 (49%), Gaps = 38/297 (12%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T+ GF FLLM Q+ + Y +E N + F+ +LSF ++Y + LS
Sbjct: 186 ITKHGFHFLLMSRQFQVLVFILHYFDYLKENSKNLVGALQFVFQLSFLCPTKSYPVEALS 245
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLA--------------------------T 159
Q+ +++ +LGL Q+ R F T LA T
Sbjct: 246 TAQQEVLQHMRELGLA-YQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGVIPT 304
Query: 160 NLSMS-----------LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
+S S ++ S++ G+I++ETNFR+YAY+ S L +L LFSK+ + P
Sbjct: 305 GVSKSDPTDSNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFP 364
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLN 268
NL+V IT++S+ A GITA QI+SFL NAHP + + P +P + DQIRLWE + +
Sbjct: 365 NLVVADITRDSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERD 424
Query: 269 RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
R Y++F FE DYA+ LLWE+P++ +VV H +R+F +
Sbjct: 425 RFLFQEGCLYEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFWK 481
>gi|256086358|ref|XP_002579367.1| tfiih polypeptide [Schistosoma mansoni]
Length = 486
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 148/297 (49%), Gaps = 38/297 (12%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T+ GF FLLM Q+ + Y +E N + F+ +LSF ++Y + LS
Sbjct: 186 ITKHGFHFLLMSRQFQVLVFILHYFDYLKENSKNLVGALQFVFQLSFLCPTKSYPVEALS 245
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLA--------------------------T 159
Q+ +++ +LGL Q+ R F T LA T
Sbjct: 246 TAQQEVLQHMRELGLA-YQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGVIPT 304
Query: 160 NLSMS-----------LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 208
+S S ++ S++ G+I++ETNFR+YAY+ S L +L LFSK+ + P
Sbjct: 305 GVSKSDPTDSNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFP 364
Query: 209 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLN 268
NL+V IT++S+ A GITA QI+SFL NAHP + + P +P + DQIRLWE + +
Sbjct: 365 NLVVADITRDSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERD 424
Query: 269 RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
R Y++F FE DYA+ LLWE+P++ +VV H +R+F +
Sbjct: 425 RFLFQEGCLYEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFWK 481
>gi|430812024|emb|CCJ30551.1| unnamed protein product [Pneumocystis jirovecii]
Length = 319
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 144/262 (54%), Gaps = 20/262 (7%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GL+ + ++T SGFQFLL++ N+Q+W ++ Y++ ++ ++ D++ FL L
Sbjct: 62 GLMFGSRCDEMKITNSGFQFLLLNINSQIWTLLLHYLNMIEDLEVDPVDILQFLFMLGNL 121
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKE 173
G++Y +++L+ IQ ++++ D G+V ++ + F PT+LAT L+ + E
Sbjct: 122 ELGQSYLISSLTPIQIQVLENLKDYGIVYRRKSSRR--FYPTRLATILT-------SNSE 172
Query: 174 GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQI 233
I S L +L LF + + NL+VG IT+ S+ AF NGITAEQI
Sbjct: 173 ILI-----------RHSPLQIAVLNLFVHLYLRFSNLVVGVITRNSVRQAFMNGITAEQI 221
Query: 234 ISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 293
IS+L AHP++ P +P V DQIRLWE + NR++ T + + +F S FE A Y
Sbjct: 222 ISYLTSYAHPQMKKNTPIIPPTVNDQIRLWEMERNRLKATEGYLFRDFNSNSDFELALKY 281
Query: 294 ARDQSGLLWEDPKKMRLVVKAE 315
A + + ++WE P K V +
Sbjct: 282 ANELNVVVWEAPSKRVFFVNIQ 303
>gi|359497414|ref|XP_003635508.1| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Vitis vinifera]
Length = 209
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
SSTQ E+ TNFSSSMMKVFQRGLL++R+KEAPRLTESGFQFLLMDTNAQLWYI+REYISN
Sbjct: 125 SSTQTEKLTNFSSSMMKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISN 184
Query: 93 SQERGINQADLISFLLELSFHVAGE 117
S+ERG++ ADLISFLLELSFHV GE
Sbjct: 185 SEERGVDPADLISFLLELSFHVTGE 209
>gi|390370355|ref|XP_783140.3| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 180
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 2/179 (1%)
Query: 147 RKENWFIPTKLATNLSMSLTDSSA--RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
RK + PT+LA NL+ ++ + K+GFIVVETNFR+YAY+ S L EIL LF +
Sbjct: 1 RKSMRYYPTRLAINLASGVSSMAKDDHKDGFIVVETNFRIYAYTESDLQVEILGLFCSMM 60
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWE 264
Y+ PNL V A+T+ES+ A NGITAEQI+SFL+ +AHP + + P VP + DQ+RLWE
Sbjct: 61 YRFPNLSVAALTRESVQLAISNGITAEQILSFLRTHAHPNMRLKTPIVPPTISDQVRLWE 120
Query: 265 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
+ +R+ T Y+EF S FE DYA+D L+W+ + ++V H ++++
Sbjct: 121 LERDRLSFTQGIIYNEFLSLHDFEVLRDYAKDLGVLIWDSTARRIMIVSPAGHDSVKKY 179
>gi|296084771|emb|CBI25914.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 33 SSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN 92
SSTQ E+ TNFSSSMMKVFQRGLL++R+KEAPRLTESGFQFLLMDTNAQLWYI+REYISN
Sbjct: 125 SSTQTEKLTNFSSSMMKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISN 184
Query: 93 SQERGINQADLISFLLELSFHVAGE 117
S+ERG++ ADLISFLLELSFHV GE
Sbjct: 185 SEERGVDPADLISFLLELSFHVTGE 209
>gi|323306981|gb|EGA60265.1| Tfb2p [Saccharomyces cerevisiae FostersO]
Length = 448
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 151/307 (49%), Gaps = 65/307 (21%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ L
Sbjct: 134 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDAL 193
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---------------------- 162
SE Q+ M++D D GLV Q+ ++ F PTKLA L+
Sbjct: 194 SETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNRE 252
Query: 163 -----------MSLTDSSARKE-------------GFIVVETNFRMYAYSTSKLHCEILR 198
S TD + + G ++VETNF++Y+YS S L +L
Sbjct: 253 EPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLS 312
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 245
LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 313 LFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLE 372
Query: 246 -----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+ + +P V DQIRLW+ +L+RV Y +F + + YA+D L
Sbjct: 373 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVL 432
Query: 301 LWEDPKK 307
LW+D K
Sbjct: 433 LWKDDXK 439
>gi|367009216|ref|XP_003679109.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
gi|359746766|emb|CCE89898.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
Length = 513
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 157/319 (49%), Gaps = 59/319 (18%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+Q+W ++ +Y+ ++ ++ ++++F+ L G+ Y+++ L
Sbjct: 186 KITNEGFQFLLQEVNSQIWALLLQYLKMTETLQMDPVEVLNFIFMLGALEFGKPYSMDGL 245
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT-----------------D 167
S+ QK M KD D GLV Q+ F PT+LAT L+ D
Sbjct: 246 SDTQKLMSKDMRDYGLV-FQKNSNSKVFYPTRLATMLTSDAKSIRGASGAMDSVLKQNKD 304
Query: 168 SSARK-----------------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
++ K +G ++VETNF++Y+YS S L IL LF ++
Sbjct: 305 EASNKAASSNADADSDDDEVGINGQPIQDGALIVETNFKLYSYSNSPLQIAILSLFVHLK 364
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------A 246
+ N++ G IT+ES+ A NGITA+QII++LQ +AHP++
Sbjct: 365 SRFTNMVTGQITRESIRRALINGITADQIIAYLQTHAHPQMRRLAEEKLEKKLELDANCK 424
Query: 247 DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPK 306
D + +P V DQI+LW+ +L+R+ Y + S + YA+D LLW+D +
Sbjct: 425 DTLQILPPTVVDQIKLWQLELDRIISYDGSLYSDIDSHQEYILLSTYAQDIGVLLWKDDR 484
Query: 307 KMRLVVKAEIHMHMREFLR 325
K V E + + ++ +
Sbjct: 485 KRIFFVSKEGNSQVLDYAK 503
>gi|346972761|gb|EGY16213.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
dahliae VdLs.17]
Length = 476
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 161/305 (52%), Gaps = 22/305 (7%)
Query: 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLI 104
+S+ ++ G L +R + +T++GF FLL + NAQ+W ++ ++ + ++ D++
Sbjct: 173 NSVKELLLAGQLVKRQGGSTTITQAGFTFLLQEENAQVWTLLLLWLDATDQQTAKHTDML 232
Query: 105 SFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP--TKLATNLS 162
SFL +LS E Y+ LS+ ++ M+ D GLV + + +F+ + TN+S
Sbjct: 233 SFLFQLSILELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVS 292
Query: 163 M---SLTDS----------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
+LTD + I+VETN+R+YAY+TS+L +L LF + + P
Sbjct: 293 TATRTLTDGMNALSQPQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPG 352
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENVCDQIRLWE 264
++ G +T++S+ A + GITA+QIIS+L +AH ++ AD P +P V DQIRLW+
Sbjct: 353 MVSGRLTRQSVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQ 412
Query: 265 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFL 324
+ R++ T + +F + +A + L W + +K A H +R++L
Sbjct: 413 LENERMKTTSGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFF--ASKHEQIRDYL 470
Query: 325 RGQNK 329
+ + K
Sbjct: 471 KLRKK 475
>gi|302405781|ref|XP_003000727.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
gi|261360684|gb|EEY23112.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
Length = 476
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 161/305 (52%), Gaps = 22/305 (7%)
Query: 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLI 104
+S+ ++ G L +R + +T++GF FLL + NAQ+W ++ ++ + ++ D++
Sbjct: 173 NSVKELLLAGQLVKRQGGSTTITQAGFTFLLQEENAQVWTLLLLWLDATDQQTAKHTDML 232
Query: 105 SFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIP--TKLATNLS 162
SFL +LS E Y+ LS+ ++ M+ D GLV + + +F+ + TN+S
Sbjct: 233 SFLFQLSILELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVS 292
Query: 163 M---SLTDS----------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
+LTD + I+VETN+R+YAY+TS+L +L LF + + P
Sbjct: 293 TATRTLTDGMNALSQSQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPG 352
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENVCDQIRLWE 264
++ G +T++S+ A + GITA+QIIS+L +AH ++ AD P +P V DQIRLW+
Sbjct: 353 MVSGRLTRQSVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQ 412
Query: 265 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFL 324
+ R++ T + +F + +A + L W + +K A H +R++L
Sbjct: 413 LENERMKTTSGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFF--ASKHEQIRDYL 470
Query: 325 RGQNK 329
+ + K
Sbjct: 471 KLRKK 475
>gi|452824378|gb|EME31381.1| transcription initiation factor TFIIH subunit H4 [Galdieria
sulphuraria]
Length = 740
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 138/257 (53%), Gaps = 30/257 (11%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYI----------SNSQERGINQADLISFLLELSFHV 114
R+T GFQFLL DT Q+W+I+ + + Q+R +N+ +++ FL ELSF
Sbjct: 192 RITTVGFQFLLKDTREQVWFILENILFSNETNLKIGTKLQKRVMNE-EMVEFLFELSFCA 250
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQG---RKENWFIPTKLATNLSMS------- 164
+G AY+ TLS+ Q+ I ADLGL+ L K+++F T L L+ S
Sbjct: 251 SGVAYHWKTLSKTQQIYIPYLADLGLIYLHISSSLEKDSYFYVTPLGVTLTRSICWLGDK 310
Query: 165 -----LTD-SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKE 218
L D S+ + ++V+TNFR+Y Y+ +L LF + Y+LPN+ VG IT++
Sbjct: 311 NNYLLLEDWSNVDNDCRMIVQTNFRVYVYTNCTFQISLLSLFIQFLYRLPNMAVGVITRD 370
Query: 219 SLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYY 278
S+ A NGITA+Q+IS+LQ + HP + ++P + DQIRLWE+ RV A
Sbjct: 371 SIRTALNNGITAQQMISYLQNHMHPNMKGKLPIT---IIDQIRLWEAQRFRVTTKHALLL 427
Query: 279 DEFPSRDVFEAACDYAR 295
D F + FE R
Sbjct: 428 DHFDNMTCFEKTYGTTR 444
>gi|453082965|gb|EMF11011.1| RNA polymerase II transcription factor B subunit 2 [Mycosphaerella
populorum SO2202]
Length = 507
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 141/257 (54%), Gaps = 29/257 (11%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQER-GINQADLISFLLELSFHVAGEAYNLNTL 124
+T GF FLL D NAQ+W ++ Y+ S + ++ D++SFL L G +Y+ + L
Sbjct: 193 ITTDGFTFLLQDVNAQVWSLLIVYLEVSGDLLQMDSVDVLSFLFTLGSLELGVSYSTSNL 252
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM---SLTDSS------------ 169
+ Q M+ D + GLV + + ++ PT+LAT L+ +L ++S
Sbjct: 253 TPTQLQMLDDLTNFGLVYRRSPSSDRYY-PTRLATTLTSDAPALPNNSFTTTTTTNQNAD 311
Query: 170 -------ARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYN 222
A ++G+I++ETN+R+YAY++S L IL LF+ + + PNLI ITK S++
Sbjct: 312 PNDPAATASEKGYIILETNYRLYAYTSSPLPISILSLFASLNTRYPNLITAKITKTSIHT 371
Query: 223 AFENGITAEQIISFLQQNAHP-----RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHY 277
A +GIT++QIIS+LQ +AHP + P +P V DQIRLW+ + R++ T +
Sbjct: 372 AIASGITSDQIISYLQTHAHPILRRQAALNSAPILPPTVVDQIRLWQIEGERMKSTKGYL 431
Query: 278 YDEFPSRDVFEAACDYA 294
+ + D + A YA
Sbjct: 432 IRDVGTEDDYTKAVQYA 448
>gi|401623322|gb|EJS41426.1| tfb2p [Saccharomyces arboricola H-6]
Length = 513
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 65/302 (21%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ L
Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKVIETSKMDLVDVLHFIFMLGALEVGKAYKIDAL 242
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM---------SLTDSSARK--- 172
S+ Q+ M++D D GLV Q+ + F PTKLA L+ + DS R+
Sbjct: 243 SDTQRIMLQDMRDYGLV-FQKHSNDTIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNRE 301
Query: 173 ----------------------------------EGFIVVETNFRMYAYSTSKLHCEILR 198
+G ++VETNF++Y+YS S L +L
Sbjct: 302 EPSANEEGANGKATTDTTTSDDLNKADLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLS 361
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 245
LF ++ + N+++G IT+ES+ A NGITAEQII++L+ +AHP++
Sbjct: 362 LFVHLKARFVNMVLGQITRESIRRALTNGITAEQIIAYLETHAHPQMRRLAEEKLEKKLE 421
Query: 246 -----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+ + +P V DQIRLW+ +L+RV Y +F + + YA+D L
Sbjct: 422 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVMTYEGSLYSDFETSQEYNVLNKYAQDIGVL 481
Query: 301 LW 302
LW
Sbjct: 482 LW 483
>gi|149031822|gb|EDL86757.1| rCG41794 [Rattus norvegicus]
Length = 209
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 124/201 (61%), Gaps = 3/201 (1%)
Query: 130 SMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGFIVVETNFRMYAY 187
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + + GFIVVETN+R+YAY
Sbjct: 7 NFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAY 65
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD 247
+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP +
Sbjct: 66 TESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLK 125
Query: 248 RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKK 307
+ P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E+ K
Sbjct: 126 QTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAK 185
Query: 308 MRLVVKAEIHMHMREFLRGQN 328
+VV H ++ F + Q
Sbjct: 186 RLMVVTPAGHSDVKRFWKRQK 206
>gi|6325135|ref|NP_015203.1| Tfb2p [Saccharomyces cerevisiae S288c]
gi|62901134|sp|Q02939.1|TFB2_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB2; Short=TFIIH subunit TFB2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|1163092|gb|AAB68240.1| Tfb2p: TFIIH subunit [Saccharomyces cerevisiae]
gi|1778059|gb|AAB40628.1| transcription/repair factor TFIIH subunit Tfb2, partial
[Saccharomyces cerevisiae]
gi|151942676|gb|EDN61022.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|190407835|gb|EDV11100.1| RNA polymerase II transcription factor B subunit 2 [Saccharomyces
cerevisiae RM11-1a]
gi|256274256|gb|EEU09164.1| Tfb2p [Saccharomyces cerevisiae JAY291]
gi|259150035|emb|CAY86838.1| Tfb2p [Saccharomyces cerevisiae EC1118]
gi|285815419|tpg|DAA11311.1| TPA: Tfb2p [Saccharomyces cerevisiae S288c]
gi|323331200|gb|EGA72618.1| Tfb2p [Saccharomyces cerevisiae AWRI796]
gi|323335024|gb|EGA76314.1| Tfb2p [Saccharomyces cerevisiae Vin13]
gi|323346175|gb|EGA80465.1| Tfb2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352000|gb|EGA84539.1| Tfb2p [Saccharomyces cerevisiae VL3]
gi|365762780|gb|EHN04313.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392295887|gb|EIW06990.1| Tfb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 513
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 65/325 (20%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ L
Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDAL 242
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---------------------- 162
SE Q+ M++D D GLV Q+ ++ F PTKLA L+
Sbjct: 243 SETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNRE 301
Query: 163 -----------MSLTDSSARKE-------------GFIVVETNFRMYAYSTSKLHCEILR 198
S TD + + G ++VETNF++Y+YS S L +L
Sbjct: 302 EPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLS 361
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 245
LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 362 LFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLE 421
Query: 246 -----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+ + +P V DQIRLW+ +L+RV Y +F + + YA+D L
Sbjct: 422 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVL 481
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLR 325
LW+D KK + + E + + +F +
Sbjct: 482 LWKDDKKKKFFISKEGNSQVLDFAK 506
>gi|323302721|gb|EGA56527.1| Tfb2p [Saccharomyces cerevisiae FostersB]
Length = 505
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 65/302 (21%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ L
Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDAL 242
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---------------------- 162
SE Q+ M++D D GLV Q+ ++ F PTKLA L+
Sbjct: 243 SETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNRE 301
Query: 163 -----------MSLTDSSARKE-------------GFIVVETNFRMYAYSTSKLHCEILR 198
S TD + + G ++VETNF++Y+YS S L +L
Sbjct: 302 EPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLS 361
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 245
LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 362 LFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLE 421
Query: 246 -----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+ + +P V DQIRLW+ +L+RV Y +F + + YA+D L
Sbjct: 422 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVL 481
Query: 301 LW 302
LW
Sbjct: 482 LW 483
>gi|366991461|ref|XP_003675496.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
gi|342301361|emb|CCC69129.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
Length = 516
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 64/301 (21%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+Q+W ++ +Y+ S+ ++ D+++F+ L G+ Y+++ L
Sbjct: 188 KITNEGFQFLLQELNSQIWTLLLQYLKMSETLKMDSVDVLNFIFMLGALEVGKGYSIDGL 247
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT------------------ 166
SE QK M+KD D GLV Q+ N F PT LA L+
Sbjct: 248 SETQKIMLKDMRDYGLV-FQKYTNSNLFYPTNLALMLTSDTKSIVRTASGALESVLQNKR 306
Query: 167 -DSSARK--------------------------EGFIVVETNFRMYAYSTSKLHCEILRL 199
DSS + +G +++ETNF++Y+YS S L L L
Sbjct: 307 EDSSKQANGEINKDLITNGDELDQVGYNPQDIPDGSLIIETNFKLYSYSNSPLQIATLSL 366
Query: 200 FSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-------------- 245
F ++ + N++ G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 367 FVHLKSRFANMVTGQITRESIRRALINGITADQIIAYLETHAHPQMRRLAEERLEKKLEL 426
Query: 246 ----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
D + +P V DQI+LW+ +L+RV Y +F + + YA+D LL
Sbjct: 427 DPNSKDPLQVLPPTVVDQIKLWQLELDRVITYEGSLYSDFETIAEYTTLSKYAQDIGVLL 486
Query: 302 W 302
W
Sbjct: 487 W 487
>gi|195477962|ref|XP_002086438.1| GE22864 [Drosophila yakuba]
gi|194186228|gb|EDW99839.1| GE22864 [Drosophila yakuba]
Length = 241
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 134/238 (56%), Gaps = 16/238 (6%)
Query: 107 LLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----- 161
L +LSF G Y+ ++ + ++ + GLV Q+ RKE F PT+LA N+
Sbjct: 2 LFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEA 60
Query: 162 ----SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITK 217
S+++ + + + G+IVVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T+
Sbjct: 61 AATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTR 120
Query: 218 ESLYNAFENGITAEQIISFLQQNAHPRV------ADRMPSVPENVCDQIRLWESDLNRVE 271
+S+ A GITAEQI+S+L+Q AHP + +P V DQI+LWE + NR
Sbjct: 121 DSVRQALRGGITAEQIVSYLEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFT 180
Query: 272 MTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
T Y++F S F DYA+ L+W++ + +VV+ H ++ + + +K
Sbjct: 181 YTEGVVYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 238
>gi|320587960|gb|EFX00435.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Grosmannia clavigera kw1407]
Length = 518
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 156/317 (49%), Gaps = 55/317 (17%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYI-SNSQER----GINQADLISFLLELSFHVAGEAYN 120
+T++GF FLL NAQ+W ++ +++ + Q+R ++ D++SFL LS G AY+
Sbjct: 200 ITQTGFTFLLQAANAQVWTLLLQWLEAVDQQRQAGGAVDSVDMLSFLFMLSTLELGRAYD 259
Query: 121 LNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS------------ 168
N L+E +++M+ D GL+ + + + + PT+LAT L+ S +
Sbjct: 260 TNALTEARRNMLPSLMDFGLIYIPPHDRASQYFPTRLATTLTSSGAAALRSLSTGFAAAS 319
Query: 169 -------------------------------SARKEGFIVVETNFRMYAYSTSKLHCEIL 197
+ G +++ETNFR+YAY+ S L +L
Sbjct: 320 ANSTAAAGLPGTGTGSNNNHVGAASTANSAATTEGRGSVILETNFRLYAYTASPLQIAVL 379
Query: 198 RLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSV 252
LFSK+ + P ++ G +T++S+ A GIT++QIIS+L NAH ++ A+ P +
Sbjct: 380 ALFSKLSQRFPGMVAGKLTRDSVRRAISYGITSDQIISYLAANAHEQMHKYAAANHRPVL 439
Query: 253 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVV 312
P V DQIRLWE + R++ + +F S ++ YA + L++ + KK V
Sbjct: 440 PPTVVDQIRLWELENERMKSHKGFLFKDFDSAKEYDMLAQYADEIGVLVYRNDKKRHFFV 499
Query: 313 KAEIHMHMREFLRGQNK 329
H + +L+ + K
Sbjct: 500 TK--HEQLVTYLKARKK 514
>gi|349581695|dbj|GAA26852.1| K7_Tfb2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 513
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 65/325 (20%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ L
Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDAL 242
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---------------------- 162
S+ Q+ M++D D GLV Q+ ++ F PTKLA L+
Sbjct: 243 SQTQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNRE 301
Query: 163 -----------MSLTDSSARKE-------------GFIVVETNFRMYAYSTSKLHCEILR 198
S TD + + G ++VETNF++Y+YS S L +L
Sbjct: 302 EPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLS 361
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 245
LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 362 LFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLE 421
Query: 246 -----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+ + +P V DQIRLW+ +L+RV Y +F + + YA+D L
Sbjct: 422 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVL 481
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLR 325
LW+D KK + + E + + +F +
Sbjct: 482 LWKDDKKKKFFISKEGNSQVLDFAK 506
>gi|346323394|gb|EGX92992.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Cordyceps militaris CM01]
Length = 511
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 165/320 (51%), Gaps = 49/320 (15%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA-DLISFLLELSFH 113
L+ RR + +T++GF FLL + NAQ+W ++ ++ ++Q+ N A D +SFL L+
Sbjct: 194 LVDRRPSGSVGITQAGFTFLLQEANAQVWTLLLLWL-DAQDADKNAAVDTLSFLFMLASL 252
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS-------MSLT 166
G AY+ + LSE ++ M+ AD GLV + +K + F PT+LAT L+ S++
Sbjct: 253 EPGRAYDTHALSEQRRDMLPALADFGLVYIPP-QKRSMFFPTRLATTLTSGASSGLRSIS 311
Query: 167 DS--------------------------------SARKEGFIVVETNFRMYAYSTSKLHC 194
D S + G +V+ETN+R+YAY+ S L
Sbjct: 312 DGVAAATSAARSSPSSSAHQPASSSAGSGPLGGGSGDQPGAVVIETNYRLYAYTQSTLQI 371
Query: 195 EILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRM 249
+L LF+++ + P+++ G +T+ S+ A + GITA+QII++L +AH ++
Sbjct: 372 AVLALFARLTMRFPDMVAGRLTRTSIRQAIQFGITADQIIAYLAAHAHEQMHRTAALTNK 431
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
P +P V DQIRLW+ + R++ TP + +F + +A + L+W D KK
Sbjct: 432 PVLPPTVVDQIRLWQLENERMKTTPGFLFRDFDDPKEYHDTRRFADEIGVLVWSDDKKG- 490
Query: 310 LVVKAEIHMHMREFLRGQNK 329
+ A +R++L+ + K
Sbjct: 491 -LFFASKFEQIRDYLKSRKK 509
>gi|340518979|gb|EGR49219.1| trancription factor tfb2-like protein [Trichoderma reesei QM6a]
Length = 480
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 161/299 (53%), Gaps = 28/299 (9%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI---SNSQERGINQADLISFLLELS 111
L+ RR + +T++GF FLL + NAQ+W ++ ++ N++ G++ D++SFL L+
Sbjct: 184 LVDRRPNGSLGITQAGFTFLLQEANAQVWTLLLLWLEVLGNNKSSGLDPVDMLSFLFMLA 243
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS--------- 162
G AY+ N L+E +++M+ D GL+ + Q K + F PT+LAT L+
Sbjct: 244 SLELGRAYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTI 302
Query: 163 ------MSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAIT 216
+ + + G +V+ETN+R+YAY+ S L +L LF+K+ + P+++ G ++
Sbjct: 303 SEGSLGLLGGGGTGEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLS 362
Query: 217 KESLYNAFENGITAEQIISFLQQNAHPRVA-----DRMPSVPENVCDQIRLWESDLNRVE 271
+ S+ A GITA+QIIS+L +AH ++ P +P V DQIRLW+ + R++
Sbjct: 363 RASIRQAINFGITADQIISYLSAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMK 422
Query: 272 MTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHMHMREFLRGQNK 329
T + +F + ++ + L+W D +M K H +++FL+ + K
Sbjct: 423 TTSGFLFRDFTDDKDYLDTARFSEEIGVLVWRNDNTRMFFANK---HEQIKDFLKSRKK 478
>gi|392574410|gb|EIW67546.1| hypothetical protein TREMEDRAFT_33390 [Tremella mesenterica DSM
1558]
Length = 504
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 149/281 (53%), Gaps = 18/281 (6%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL D QLW I+ Y+++ + I+ A ++S L ++Y+L+T S
Sbjct: 220 ITSQGFQFLLEDRQTQLWQILVFYLTSIEVSCISSAPVLSLFFSLGCMQITQSYSLSTFS 279
Query: 126 E-IQKSMIKDFADLGLV---KLQQGRKENWFIPTKLATNL------------SMSLTDSS 169
Q + D GL+ G K ++F PT L+T+L + + S
Sbjct: 280 NPTQLQALDDLQSYGLIYRPATPSGAKADYFFPTHLSTSLCSGNSALSAALNTTEIDTSH 339
Query: 170 ARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGIT 229
+ F+++ETN+++YAY+ ++L IL LF ++ Q NL+VG + + + A E GI+
Sbjct: 340 EDDKKFLILETNYKIYAYTNNELEIAILNLFMDIKVQYRNLVVGKLDRAHVKAAMEKGIS 399
Query: 230 AEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
A QII++LQ +AHP++ P + + DQ+ LW+ + NR+ + + EF S+D++E
Sbjct: 400 AYQIIAYLQSHAHPQMYSSPPPILHTTIVDQLHLWDKERNRLRTEESEMF-EFFSKDLYE 458
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
A+ GLL PK L V + +++F++GQ +
Sbjct: 459 DTEAEAKRYDGLLLAVPKDKLLFVNPSVKDAIKDFVKGQQR 499
>gi|402083674|gb|EJT78692.1| RNA polymerase II transcription factor B subunit 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 496
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 160/308 (51%), Gaps = 37/308 (12%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA----DLISFLLE 109
GL+ RR ++++GF FLL ++NAQ+W ++ +++ G + + D++SFL
Sbjct: 191 GLVERRGGSI-SISKTGFTFLLQESNAQVWTLLLQWLEAVNAAGGDHSAMAVDMLSFLFM 249
Query: 110 LSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM------ 163
L G+AY+ LSE +++M+ D GLV + G +F PT+LAT L+
Sbjct: 250 LGTLELGQAYDTEELSEQRRNMLPSLVDFGLVYIPPGNTSQYF-PTRLATTLTSGSSALR 308
Query: 164 ----------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 207
S S +G I++ETN+R+YAY+++ L IL LF+++ ++
Sbjct: 309 SASSALAAATAEGPNASGGGQSEAAKGSIIIETNYRLYAYTSTPLQIAILGLFAELRFRF 368
Query: 208 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVAD--RMPSVPENVCDQIRL 262
++ G + +ES+ A GITA+Q+I +L +AH R A + P +P V DQIRL
Sbjct: 369 AGMVTGRLDRESIKRAISYGITADQVIEYLAAHAHEQMHRTATLRKKPVLPPTVVDQIRL 428
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMR 321
W+ + R+++ + +F S+ ++ YA + LLW D +++ K + +
Sbjct: 429 WQLETERMKIMRGFLFRDFDSQAEYDDLAKYADEIGVLLWRSDARQLFFASKVD---QLS 485
Query: 322 EFLRGQNK 329
FL+ + K
Sbjct: 486 VFLKARKK 493
>gi|324512881|gb|ADY45318.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 481
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 155/298 (52%), Gaps = 35/298 (11%)
Query: 54 GLLSRRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSF 112
GL S + E +T +GFQFLL++ Q+W + Y+ + G N + FLL+L+
Sbjct: 171 GLTSGGESEGDMEITSAGFQFLLLNQTEQIWMYILHYLRLEESMGKNVMAELDFLLKLTL 230
Query: 113 -----HVAGE---------------AYNLN-TLSEIQKSMIKDFADLGLVKLQQGRKENW 151
H G A+ ++ + SE + + +LGLV +++ RK+ +
Sbjct: 231 CVDHTHTNGRLRVVDGDREKKATWRAFFIDESWSETITNFLMHLRELGLVFIRK-RKDGY 289
Query: 152 FIPTKLATNLSMSLTDSSARKE-----GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQ 206
F T L +L++S + +A E G+I+VETN+R+YAY+ S L IL F+++ Y+
Sbjct: 290 FFITPLFAHLTVSSSSETAVAEKRTHSGYIIVETNYRVYAYTDSSLQLAILSTFTEMLYR 349
Query: 207 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV---ADRMPS----VPENVCDQ 259
++ VG +T++S+ A + GITA QIISFL+ NAHP A+ P VP V DQ
Sbjct: 350 FNDMSVGMLTRDSVRRALQVGITASQIISFLRANAHPETVAAANASPGVIHCVPVTVADQ 409
Query: 260 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIH 317
IRLWE + +R+ + Y F S + +Y R Q LLW D + +VV E H
Sbjct: 410 IRLWEDERHRLVFFDSALYSTFESEREYVGVKEYTRSQDILLWFDDVQRLVVVTEEGH 467
>gi|340939354|gb|EGS19976.1| RNA polymerase II transcription factor B subunit 2-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 514
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 55/314 (17%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYI------------------SNSQERGINQADLISFL 107
+T++GF FLL + NAQ+W ++ ++ N+ + +++SFL
Sbjct: 204 ITQAGFTFLLQEANAQVWTLLLLWLEAADQAKAAAAAASGVDPKNAPPTKPDSIEMLSFL 263
Query: 108 LELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT- 166
L+ G AY+ + LSE +++M+ D GL+ + + +F PT+LAT L+ S +
Sbjct: 264 FMLASLELGRAYDTDALSETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSASA 322
Query: 167 -------------------------DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
D SA K G I++ETN+R+YAY++S L +L LF+
Sbjct: 323 LRSVSSGFTAATNNTANDASSLGGADPSAHK-GSIIIETNYRLYAYTSSPLQIAVLALFT 381
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENV 256
+ + ++ G +T+ES+ A GITA+QIIS+L +AH ++ A P +P V
Sbjct: 382 HLNMRFAGMVTGRLTRESIRRAISFGITADQIISYLASHAHEQMVRAAAAAGRPVLPPTV 441
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAE 315
DQIRLW+ + R+ +P + +F + + + A YA + L+W D K+M K E
Sbjct: 442 VDQIRLWQLENERMRTSPGFLFKDFENVEEYMALAGYAEEIGVLVWRSDRKRMFFASKFE 501
Query: 316 IHMHMREFLRGQNK 329
+R++L+ + K
Sbjct: 502 ---QLRDYLKSRKK 512
>gi|116201905|ref|XP_001226764.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
gi|88177355|gb|EAQ84823.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
Length = 503
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 164/313 (52%), Gaps = 44/313 (14%)
Query: 58 RRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYI-----SNSQERG---INQADLISFLL 108
R D +A +T++GF FLL + NAQ+W ++ ++ + + +G + D++SFL
Sbjct: 192 RHDTQAGVGITQAGFTFLLQEANAQVWTLLLLWLEAADRAKGEAKGAANTDSIDMLSFLF 251
Query: 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM----- 163
L+ G AYN L+E +++M+ D GL+ + + +F PT+LAT L+
Sbjct: 252 MLASLELGRAYNTGALTETRRNMLPHLVDFGLIFIPREDTRQYF-PTRLATTLTSSASSL 310
Query: 164 ----------------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
+ ++SA +G +++ETN+R+YAY++S L +L LF+
Sbjct: 311 RSVSSGFNAATANNPGDTSSLGTTPETSAASKGSVIIETNYRLYAYTSSPLQIAVLGLFT 370
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENV 256
++ + + G +T++S+ A GITA+QIIS+L +AH ++ A P +P V
Sbjct: 371 QLNMRFAGMATGRLTRDSIRRAIGFGITADQIISYLASHAHDQMVRAAAATGRPVLPPTV 430
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEI 316
DQIRLW+ + R+ + + +F S + + + YA + L+W KK R+ ++I
Sbjct: 431 VDQIRLWQLENERMRTSAGFLFKDFDSLEEYVSLSSYADEVGVLVWRSDKK-RMFYASKI 489
Query: 317 HMHMREFLRGQNK 329
+R++L+ + K
Sbjct: 490 E-QLRDYLKSRKK 501
>gi|358385986|gb|EHK23582.1| hypothetical protein TRIVIDRAFT_36912 [Trichoderma virens Gv29-8]
Length = 492
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 162/311 (52%), Gaps = 40/311 (12%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI---SNSQERGINQADLISFLLELS 111
L+ RR + +T++GF FLL + NAQ+W ++ ++ N++ G++ D++SFL L+
Sbjct: 184 LVDRRPNGSLGITQAGFTFLLQEANAQVWTLLLLWLEVLGNNKGSGLDPVDMLSFLFMLA 243
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMS------- 164
G AY+ N L+E +++M+ D GL+ + Q K + F PT+LAT L+
Sbjct: 244 SLELGRAYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTI 302
Query: 165 --------------------LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVE 204
L S + G +V+ETN+R+YAY+ S L +L LF+K+
Sbjct: 303 SEGVTAATQSAQTSQQALGPLGGSGGEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLN 362
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRMPSVPENVCDQ 259
+ P+++ G +++ S+ A GITA+QIIS+L +AH ++ P +P V DQ
Sbjct: 363 MRFPDMVAGRLSRASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQ 422
Query: 260 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHM 318
IRLW+ + R++ T + +F + ++ + L+W+ D +M K H
Sbjct: 423 IRLWQLENERMKTTSGFLFRDFTDDKDYLDTARFSEEIGVLVWKNDHARMFFANK---HE 479
Query: 319 HMREFLRGQNK 329
+++FL+ + +
Sbjct: 480 QIKDFLKTRKR 490
>gi|400597688|gb|EJP65418.1| RNA polymerase II transcription factor B subunit 2 [Beauveria
bassiana ARSEF 2860]
Length = 507
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 160/322 (49%), Gaps = 52/322 (16%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RR + +T++GF FLL + NAQ+W ++ ++ D++SFL L+
Sbjct: 189 LVDRRPNGSIGITQAGFTFLLQEANAQVWTLLLLWLDALDADKSAAVDMLSFLFVLASLE 248
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS------ 168
G AY+ N L+E ++ M+ AD GLV + +K + F PT+LAT L+ + S
Sbjct: 249 LGRAYDTNALTEHRRDMLPALADFGLVYIPP-QKRSMFFPTRLATTLTSGASSSLRSISE 307
Query: 169 ----------------------------------SARKEGFIVVETNFRMYAYSTSKLHC 194
+ + G IV+ETN+R+YAY+ S L
Sbjct: 308 GVVAATSAALSASSSSSTHQDQNHQSRAGPLGAGAGDQIGSIVIETNYRLYAYTQSTLQI 367
Query: 195 EILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------VADR 248
+L LFS++ + P+++ G IT+ S+ A + GITA+QII++L +AH + +A R
Sbjct: 368 AVLALFSRLTMRFPDMVAGRITRTSIRQAIQFGITADQIIAYLAAHAHEQMHRSAALAAR 427
Query: 249 MPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW-EDPKK 307
P +P V DQIRLW+ + R++ T + +F + ++ +A + L+W D
Sbjct: 428 -PVLPPTVVDQIRLWQLENERMKTTGGFLFRDFDDQKEYQDTRRFADEIGVLVWSSDKTG 486
Query: 308 MRLVVKAEIHMHMREFLRGQNK 329
M K E +R++L+ + K
Sbjct: 487 MFFASKFE---QIRDYLKSRKK 505
>gi|336270172|ref|XP_003349845.1| hypothetical protein SMAC_00733 [Sordaria macrospora k-hell]
gi|380095234|emb|CCC06707.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 496
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 157/308 (50%), Gaps = 55/308 (17%)
Query: 66 LTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLELSFHVAGEAYNLN 122
+T++GF FLL ++NAQ+W ++ E ++ + G++ D++SFL LS G AY+ +
Sbjct: 198 ITQAGFTFLLQESNAQVWTLLLLWLEAADHAADSGMDSIDMLSFLFMLSSLELGTAYDTS 257
Query: 123 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----------SMSLTDSSARK 172
L+E +++M+ D GL+ R F PT+LAT L S + T ++A
Sbjct: 258 ALTETRRNMLPSLVDFGLIYFP--RDTRQFFPTRLATTLTSTASALRTVSSAFTAATANP 315
Query: 173 EG-------------------------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 207
G I++ETN+R+YAY+TS L +L LF ++ +
Sbjct: 316 SGEPGTTTSTSGGPAGATPADKTGTSKGIIIETNYRIYAYTTSPLQIAVLALFCQLNMRF 375
Query: 208 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV------PENVCDQIR 261
PN++ A+ A GITA+QIIS+L +AH ++ R +V P V DQIR
Sbjct: 376 PNMVSAAL------RAIGFGITADQIISYLHAHAHQQMV-REATVTGKTVLPPTVVDQIR 428
Query: 262 LWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMR 321
LW+ + R++ T + +F S + + A YA + L+W++ K R + A H +R
Sbjct: 429 LWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHEQLR 486
Query: 322 EFLRGQNK 329
++L+ + K
Sbjct: 487 DYLKSRKK 494
>gi|367030175|ref|XP_003664371.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
gi|347011641|gb|AEO59126.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
Length = 512
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 165/326 (50%), Gaps = 54/326 (16%)
Query: 55 LLSRRD--KEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQE----------------- 95
L+ RR+ K +T++GF FLL + NAQ+W ++ ++ +
Sbjct: 188 LVERRNDTKAGVGITQAGFTFLLQEANAQVWTLLLLWLEAADRAKGAAEQGKGGGAAAAA 247
Query: 96 RGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPT 155
+ D++SFL L+ G AY+ + LSE +++M+ D GL+ + + +F PT
Sbjct: 248 AKADSIDMLSFLFMLASLELGRAYDTDALSETRRNMLPALVDFGLIYIPREDTRQYF-PT 306
Query: 156 KLATNLSM---------------------------SLTDSSARKEGFIVVETNFRMYAYS 188
+LAT L+ + ++SA +G +++ETN+R+YAY+
Sbjct: 307 RLATTLTSSASSLRSVSSGFSAAAANNPGDASSLGTTPETSAASKGSVIIETNYRLYAYT 366
Query: 189 TSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--- 245
+S L +L LF+++ + + G +T++S+ A GITA+QIIS+L +AH ++
Sbjct: 367 SSPLQIAVLALFTQLNMRFAGMATGRLTRDSIRRAIGFGITADQIISYLASHAHEQMVRA 426
Query: 246 --ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE 303
A P +P V DQIRLW+ + R+ + + +F S D + + YA + L+W+
Sbjct: 427 AAATGRPVLPPTVVDQIRLWQLENERMRTSAGFLFKDFDSLDEYLSLSAYAEEIGVLVWK 486
Query: 304 DPKKMRLVVKAEIHMHMREFLRGQNK 329
KK R+ ++I +R++LR + +
Sbjct: 487 SDKK-RMFYASKIE-QLRDYLRSRKR 510
>gi|223993063|ref|XP_002286215.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
gi|220977530|gb|EED95856.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
Length = 461
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 159/308 (51%), Gaps = 42/308 (13%)
Query: 30 DNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKE--------APR-LTESGFQFLLMDTNA 80
D GS E P +M++ R L + D + AP +T G++F+L DTNA
Sbjct: 161 DRGSGYGIEEPPE---AMVQFLMRIGLMQVDPDFKGNDKSRAPLVITSKGYEFMLRDTNA 217
Query: 81 QLWYIVREYI---SNSQERGINQADLISFLLELSFHVAGEAYNLNTL-SEIQKSMIKDFA 136
Q+W V +Y+ ++ +++ + + +SFL+ L GE Y + L S+ +++++DF+
Sbjct: 218 QVWQFVLQYLNSMAHHEQKDFIRMEALSFLICLGSCRVGEGYQSSVLGSKSARALMRDFS 277
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS----------------ARKEGFIVVET 180
GL+ + + +N F PT+ A NL S + +R +VV+T
Sbjct: 278 RFGLLFVCRVAGKNSFYPTRAAVNLVASSEKAGRQASDLMGQTLAAPVPSRSHLAVVVQT 337
Query: 181 NFRMYAYSTSKLHCEILRLFSKVEY--QLPNLIVGAITKESLYNAFENGITAEQIISFLQ 238
NF++ AY+ SKLH L LF V +LPN+I IT++S+ +AF G+TA+QI+ FL
Sbjct: 338 NFQVVAYTKSKLHISTLGLFCDVSSFRRLPNVIFFHITRDSIRSAFRLGVTADQILRFLH 397
Query: 239 QNAHP--RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV--FEAACDYA 294
+AHP R DR P VP NV DQI LW+ + +RV M + RD F A YA
Sbjct: 398 VHAHPMLRSGDR-PMVPSNVVDQILLWDRERHRVVMDEVCVHQ---CRDAAEFTAVSQYA 453
Query: 295 RDQSGLLW 302
D L W
Sbjct: 454 SDVDALAW 461
>gi|322697444|gb|EFY89224.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium acridum CQMa 102]
Length = 541
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 63/333 (18%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER---GINQADLISFLLELS 111
L+ RR + +T++GF FLL + NAQ+W ++ ++ S+ G+ D++SFL L+
Sbjct: 212 LVDRRPNGSIGITQAGFTFLLQEPNAQVWTLLLLWLEASETNKAAGLETVDMLSFLFVLA 271
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS--------- 162
G AY+ N L+E +++M+ D GL+ + Q K + F PT+LAT L+
Sbjct: 272 SLELGRAYDTNALTEQRRNMLPSLLDFGLIYIPQ-HKRSMFFPTRLATALTSGGGSLRTI 330
Query: 163 ---------------------------------------MSLTDSSARKEGFIVVETNFR 183
SA ++G ++VETN+R
Sbjct: 331 SEGVAAATAAAGPSSHEGVAAATAAAGPSSQSGSGSGGAGGPLGPSADQKGSVIVETNYR 390
Query: 184 MYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 243
+YAY+ S L +L LF K+ + P+++ G +T+ S++ A GITA+QIIS+L +AH
Sbjct: 391 IYAYTQSTLQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGITADQIISYLAAHAHE 450
Query: 244 R------VADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQ 297
+ +A++ P +P V DQIRLW+ + R++ T + +F F +A +
Sbjct: 451 QMHRTAALANK-PILPPTVVDQIRLWQLENERMKTTGGFLFRDFEDHKEFLDTARFAEEI 509
Query: 298 SGLLW-EDPKKMRLVVKAEIHMHMREFLRGQNK 329
L+W D M K E +R++L+ + +
Sbjct: 510 GVLVWRSDKSGMFFANKYE---QIRDYLKSRKR 539
>gi|401887601|gb|EJT51582.1| hypothetical protein A1Q1_07170 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699646|gb|EKD02845.1| hypothetical protein A1Q2_02789 [Trichosporon asahii var. asahii
CBS 8904]
Length = 451
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 20/277 (7%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYN----L 121
+T GFQFLL D QLW I+ Y++ Q RG AD++S L G+ Y+
Sbjct: 168 ITSQGFQFLLEDRQTQLWQILMFYLARKQRRGEAAADILSLFFSLGCMQLGQDYSASKSF 227
Query: 122 NTLSEIQKSMIKDFADLGLVKLQQ---GRKENWFIPTKLATNLSMSLTD----SSARKEG 174
+ Q+ + D G + +Q GRK + F PT LAT+L T ++A +
Sbjct: 228 QNFPQGQQCL-DDLEQYGFIYRRQEVDGRKTDQFFPTHLATSLCSGDTSVNRSATADDKR 286
Query: 175 FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQII 234
F+++ETN+R+YAY++++L IL LF + + PNLIVG + + + A + GI+A QII
Sbjct: 287 FLILETNYRVYAYTSNELEIAILNLFVNITIRYPNLIVGHLDRRHVKAAMDKGISAYQII 346
Query: 235 SFLQQNAHPRVADRMPS-VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 293
S+L +AHP++ + P + +V DQ+ LW+ + NRV+ + EF S+++FE D
Sbjct: 347 SYLTTHAHPQMYNHPPPLLHPSVTDQLHLWDRERNRVQAQDTVMF-EFYSKELFETCRDE 405
Query: 294 ARDQSGLLWEDPKKMR-----LVVKAEIHMHMREFLR 325
A ++ G L ++ + + V I +R+F++
Sbjct: 406 A-ERMGALQHSVQRGQGMAKLIFVDPTIRESLRDFIK 441
>gi|164660182|ref|XP_001731214.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
gi|159105114|gb|EDP44000.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
Length = 231
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 133/220 (60%), Gaps = 12/220 (5%)
Query: 34 STQAERPTNFSSSMMKVFQRGLLSRRDKEAP---RLTESGFQFLLMDTNAQLWYIVREYI 90
S QA P N +++ + QR L +RD + +T GFQFLL D N+QLW ++ Y+
Sbjct: 4 SEQAASPRN---TVLFLLQRAGLMQRDHQTNDKLNITSLGFQFLLQDVNSQLWALLLHYL 60
Query: 91 SNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKEN 150
S + ER ++ ++++F + G AY S+ Q +++ +D GLV + +
Sbjct: 61 SMADERNMDLVEVLAFFFTVGGLELGRAYESRGFSQTQLQTLEELSDYGLV-YRPSKSAK 119
Query: 151 WFIPTKLATNLSMSLTDSSAR-----KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
+F PT+LA+ L+ + + +R ++G++++ETN+R+YAY+ + L IL LF ++
Sbjct: 120 YFFPTRLASTLTSTASPLLSRLNDQEEQGYLILETNYRVYAYTANLLRIAILNLFVTLKS 179
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 245
+LPNL++G +T+ S+ +A GITA+QII++L +AHP++
Sbjct: 180 RLPNLVIGQLTRHSVKSALNKGITADQIITYLTHHAHPQM 219
>gi|322711210|gb|EFZ02784.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium anisopliae ARSEF 23]
Length = 540
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 162/329 (49%), Gaps = 59/329 (17%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER---GINQADLISFLLELS 111
L+ RR +T++GF FLL + NAQ+W ++ ++ S+ G+ D++SFL L+
Sbjct: 215 LVDRRPNGTIGITQAGFTFLLQEPNAQVWTLLLLWLEASETNKAAGLETVDMLSFLFVLA 274
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTD---- 167
G AY+ N L+E +K+M+ D GL+ + Q K + F PT+LAT L+ +
Sbjct: 275 SLELGRAYDTNALTEQRKNMLPSLLDFGLIYIPQ-HKRSMFFPTRLATTLTSGGSSLRTI 333
Query: 168 ------------------------------------SSARKEGFIVVETNFRMYAYSTSK 191
SA ++G ++VETN+R+YAY+ S
Sbjct: 334 SEGVAAATAAATTTAPAGGPSSQSGSGSGGTGGPLGPSADQKGSVIVETNYRIYAYTQST 393
Query: 192 LHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------V 245
L +L LF K+ + P+++ G +T+ S++ A GI+A+QIIS+L +AH + +
Sbjct: 394 LQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGISADQIISYLAAHAHEQMHRSAAL 453
Query: 246 ADRMPSVPENVCDQIRLWESDLN----RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
A++ P +P V DQIRLW+ + R++ T + +F F +A + L+
Sbjct: 454 ANK-PILPPTVVDQIRLWQLEWQLENERMKTTGGFLFRDFEDHKEFLDTARFAEEIGVLV 512
Query: 302 W-EDPKKMRLVVKAEIHMHMREFLRGQNK 329
W D M K E +R++L+ + +
Sbjct: 513 WRSDKSGMFFANKYE---QIRDYLKSRKR 538
>gi|367040709|ref|XP_003650735.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
gi|346997996|gb|AEO64399.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 162/315 (51%), Gaps = 56/315 (17%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYI-------------------SNSQERGINQADLISF 106
+T++GF FLL + NAQ+W ++ ++ + SQ + + D++SF
Sbjct: 202 ITQAGFTFLLQEANAQVWTLLLLWLEAADHSKAAAAAAGDHAKGAASQGKP-DSIDMLSF 260
Query: 107 LLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----- 161
L L+ G AY+ ++L+E +++M+ D GL+ + + +F PT+LAT L
Sbjct: 261 LFMLASLELGRAYDTDSLTETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSAS 319
Query: 162 ---------------------SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 200
S+ +T + +G +++ETN+R+YAY++S L +L LF
Sbjct: 320 ALRSVSSGFSAAAANNPGDAASLGMTPDTTPTKGSLIIETNYRLYAYTSSPLQIAVLALF 379
Query: 201 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPEN 255
+++ + ++ G +T++S+ A GITA+QIIS+L +AH ++ A P +P
Sbjct: 380 TQLNMRFAGMVTGRLTRDSIRRAISFGITADQIISYLASHAHEQMTRAAAAAGRPVLPPT 439
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKA 314
V DQIRLW+ + R+ T + +F S + + + YA + L+W+ D K++ K
Sbjct: 440 VVDQIRLWQLENERMRTTAGFLFKDFDSPEEYVSLSGYAEEIGVLVWKSDRKRVFFASKF 499
Query: 315 EIHMHMREFLRGQNK 329
E +R++L+ + K
Sbjct: 500 E---QLRDYLKSRKK 511
>gi|358394641|gb|EHK44034.1| hypothetical protein TRIATDRAFT_222970 [Trichoderma atroviride IMI
206040]
Length = 491
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 158/311 (50%), Gaps = 40/311 (12%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI---SNSQERGINQADLISFLLELS 111
L+ RR +T++GF FLL + NAQ+W ++ ++ N++ G++ D++SFL L+
Sbjct: 183 LVDRRPNGGLGITQAGFTFLLQEANAQVWTLLLLWLDVLGNNKGSGLDPVDMLSFLFMLA 242
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSAR 171
G AY+ N L+E +++M+ D GL+ + Q K + F PT+LAT L+
Sbjct: 243 SLELGRAYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTI 301
Query: 172 KEGF---------------------------IVVETNFRMYAYSTSKLHCEILRLFSKVE 204
EG +V+ETN+R+YAY+ S L +L LF+K+
Sbjct: 302 SEGVTAATQSAQTSQQSLGPLGGGGEQQSGSVVIETNYRLYAYTQSALQIAVLALFAKLN 361
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRMPSVPENVCDQ 259
+ P+++ G +++ S+ A GITA+QIIS+L +AH ++ P +P V DQ
Sbjct: 362 MRFPDMVAGRLSRASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQ 421
Query: 260 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWE-DPKKMRLVVKAEIHM 318
IRLW+ + R++ T + +F + ++ + L+W D +M K H
Sbjct: 422 IRLWQLENERMKTTSGFLFRDFTDDKDYLDTARFSEEIGVLVWRNDHARMFFANK---HE 478
Query: 319 HMREFLRGQNK 329
+++FL+ + +
Sbjct: 479 QIKDFLKTRKR 489
>gi|312069992|ref|XP_003137940.1| transcription factor Tfb2 family protein [Loa loa]
Length = 470
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 22/303 (7%)
Query: 44 SSSMMKVFQRGLL--SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S + ++F+ L S D +T +GFQFLL++ + Q+W + Y + GI+
Sbjct: 161 SGTTKRLFRSAGLTSSENDDGDIEITSAGFQFLLLNRSEQIWTYLLYYFHMQEVAGIDII 220
Query: 102 DLISFLLELSFH------VAGEAYNLN-TLSEIQKSMIKDFADLGLVKLQQGRKENWFIP 154
+ FL ++ A+ ++ E K + +LGLV +++ RK+ +F
Sbjct: 221 KELDFLFRVTNGSDKERPAGSRAFLIDECWPEPTKDFLMHLRELGLVFIRK-RKDGFFFL 279
Query: 155 TKLATNL-SMSLTDSSA----RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
T L +L S+S + + GF++VETN+R+YAY+ S L IL F+++ Y+ +
Sbjct: 280 TPLLNHLTSISYASETGIENRNQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFND 339
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-------ADRMPSVPENVCDQIRL 262
+ VG +++E++ AF+ GITA QII+FL+ NAHP + SVP V DQIRL
Sbjct: 340 MSVGVLSREAVRRAFQVGITAAQIIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRL 399
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMRE 322
WE + R+ A Y F S + Y Q LLW D + +V+ E H ++
Sbjct: 400 WEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSSQGILLWCDDVQRLMVITEEGHESVKS 459
Query: 323 FLR 325
+ +
Sbjct: 460 WWK 462
>gi|393910938|gb|EFO26137.2| transcription factor Tfb2 family protein [Loa loa]
Length = 486
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 155/316 (49%), Gaps = 35/316 (11%)
Query: 44 SSSMMKVFQRGLL--SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S + ++F+ L S D +T +GFQFLL++ + Q+W + Y + GI+
Sbjct: 164 SGTTKRLFRSAGLTSSENDDGDIEITSAGFQFLLLNRSEQIWTYLLYYFHMQEVAGIDII 223
Query: 102 DLISFLLELSFH---VAGEAYNLNT-------------LSEIQKSMIKDFA----DLGLV 141
+ FL L+ + +G N + E KDF +LGLV
Sbjct: 224 KELDFLFRLTLYSGDTSGGTRVTNGSDKERPAGSRAFLIDECWPEPTKDFLMHLRELGLV 283
Query: 142 KLQQGRKENWFIPTKLATNL-SMSLTDSSA----RKEGFIVVETNFRMYAYSTSKLHCEI 196
+++ RK+ +F T L +L S+S + + GF++VETN+R+YAY+ S L I
Sbjct: 284 FIRK-RKDGFFFLTPLLNHLTSISYASETGIENRNQNGFVIVETNYRVYAYTDSNLQLAI 342
Query: 197 LRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-------ADRM 249
L F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL+ NAHP +
Sbjct: 343 LSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLRANAHPTTYAVTTEYGGMI 402
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
SVP V DQIRLWE + R+ A Y F S + Y Q LLW D +
Sbjct: 403 QSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSSQGILLWCDDVQRL 462
Query: 310 LVVKAEIHMHMREFLR 325
+V+ E H ++ + +
Sbjct: 463 MVITEEGHESVKSWWK 478
>gi|393910939|gb|EJD76097.1| transcription factor Tfb2 family protein, variant [Loa loa]
Length = 389
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 155/316 (49%), Gaps = 35/316 (11%)
Query: 44 SSSMMKVFQRGLL--SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S + ++F+ L S D +T +GFQFLL++ + Q+W + Y + GI+
Sbjct: 67 SGTTKRLFRSAGLTSSENDDGDIEITSAGFQFLLLNRSEQIWTYLLYYFHMQEVAGIDII 126
Query: 102 DLISFLLELSFH---VAGEAYNLNT-------------LSEIQKSMIKDFA----DLGLV 141
+ FL L+ + +G N + E KDF +LGLV
Sbjct: 127 KELDFLFRLTLYSGDTSGGTRVTNGSDKERPAGSRAFLIDECWPEPTKDFLMHLRELGLV 186
Query: 142 KLQQGRKENWFIPTKLATNL-SMSLTDSSA----RKEGFIVVETNFRMYAYSTSKLHCEI 196
+++ RK+ +F T L +L S+S + + GF++VETN+R+YAY+ S L I
Sbjct: 187 FIRK-RKDGFFFLTPLLNHLTSISYASETGIENRNQNGFVIVETNYRVYAYTDSNLQLAI 245
Query: 197 LRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-------ADRM 249
L F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL+ NAHP +
Sbjct: 246 LSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLRANAHPTTYAVTTEYGGMI 305
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
SVP V DQIRLWE + R+ A Y F S + Y Q LLW D +
Sbjct: 306 QSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSSQGILLWCDDVQRL 365
Query: 310 LVVKAEIHMHMREFLR 325
+V+ E H ++ + +
Sbjct: 366 MVITEEGHESVKSWWK 381
>gi|170589001|ref|XP_001899262.1| Transcription factor Tfb2 family protein [Brugia malayi]
gi|158593475|gb|EDP32070.1| Transcription factor Tfb2 family protein [Brugia malayi]
Length = 465
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 152/312 (48%), Gaps = 35/312 (11%)
Query: 44 SSSMMKVFQRGLL--SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S + ++F+ L S D +T +GFQFLL++ Q+W + Y + GI+
Sbjct: 143 SGTTKRLFRSAGLTSSGNDDGDIEITSAGFQFLLLNRPEQIWTYLLHYFHMQEVAGIDIV 202
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKS----------------MIKDFA----DLGLV 141
+ FL +L+ + ++ K IKDF +LGLV
Sbjct: 203 KELDFLFKLTLYSGSTCGGTRVVNGSDKERPTGSRAFIIDENWPETIKDFLMHLRELGLV 262
Query: 142 KLQQGRKENWFIPTKLATNLSMSLTDSSARKE-----GFIVVETNFRMYAYSTSKLHCEI 196
+++ RK+ +F T L +L+ S A E GF++VETN+R+YAY+ S L I
Sbjct: 263 FIRK-RKDGFFFLTPLLNHLTGISNTSEAGMENRNQNGFVIVETNYRVYAYTDSNLQLAI 321
Query: 197 LRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP-------RVADRM 249
L F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL +NAHP +
Sbjct: 322 LSTFTEMLYRFSDMSVGVLSREAVRRAFQVGITAAQIIAFLSRNAHPITCAVTTEYGRMI 381
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
SVP V DQI+LWE + R+ A Y F S + Y Q+ LLW +
Sbjct: 382 QSVPITVVDQIQLWEDERRRLTFCSAAVYSSFESEKEYFGLKGYVISQNILLWCHDVQRL 441
Query: 310 LVVKAEIHMHMR 321
+V+ E H +++
Sbjct: 442 MVITEEGHENVK 453
>gi|392594381|gb|EIW83705.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 393
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 26/226 (11%)
Query: 33 SSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYIS 91
SS Q + PT + ++ + QR GL++ ++T SGFQFLL QLW ++ +Y+
Sbjct: 163 SSGQGQYPTKPTQGVLYLLQRSGLMASYHGSTLQITSSGFQFLLYSPRDQLWDLLLQYLH 222
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW 151
+ER ++ +++SF LS G Y+ LSE QK+M++D D GLV Q+
Sbjct: 223 MVEERQMDLVEVLSFFFMLSTMELGREYSTEPLSETQKAMLEDLRDYGLV-WQRKASSKR 281
Query: 152 FIPTKLATNL---SMSLTDSSARK---------------------EGFIVVETNFRMYAY 187
F PT+LAT L S SL + + GFIV+ETN+R+YAY
Sbjct: 282 FSPTRLATTLTSVSPSLPTAGGSRNPGSAPGASSVANSTGINTNDHGFIVLETNYRVYAY 341
Query: 188 STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQI 233
+ + L +L LF ++Y+ PNL+VG +T+ES+ A NGI+AEQI
Sbjct: 342 TDNPLQIAVLNLFITLKYRFPNLVVGMLTRESVRRALGNGISAEQI 387
>gi|310799661|gb|EFQ34554.1| transcription factor tfb2 [Glomerella graminicola M1.001]
Length = 485
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 161/313 (51%), Gaps = 31/313 (9%)
Query: 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GINQ 100
SS+ + G L RR A +T++GF FLL + NAQ+W ++ ++ + G+
Sbjct: 173 SSVKNLLVAGQLVRRQGSAVGITQAGFTFLLQEANAQVWTLLLLWLEATDHAEDAAGMES 232
Query: 101 ADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATN 160
D++SFL L+ G Y+ N L+E +++M+ D GL+ + + + +F PT+LAT
Sbjct: 233 TDMLSFLFLLASLELGRPYDTNALTEARRNMLPSLLDFGLIYIPSHKPQQYF-PTRLATT 291
Query: 161 L--------------SMSLTDSSA-----RKEGFIVVETNFRMYAYSTSKLHCEILRLFS 201
L S + S A R F + ETN+R+YAY + L +L LF
Sbjct: 292 LTSSSSALSYAHCRDSETFFQSYASHLMIRVRPFRLSETNYRVYAYGQTPLQIAVLSLFC 351
Query: 202 KVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRMPSVPENV 256
K++ + +++ G +T+ S+ NA E GITA+QIIS+L +AH ++ A P +P V
Sbjct: 352 KLKLRFADMVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAARSRPILPPTV 411
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEI 316
DQIRLW+ + R+ T + +F S ++ YA + L+W + K A
Sbjct: 412 IDQIRLWQLETERMTTTSGFLFRDFDSPREYDDIAGYAAEIGVLVWRNDKLGMFF--ASK 469
Query: 317 HMHMREFLRGQNK 329
H +R++L+ + K
Sbjct: 470 HEQIRDYLKLRKK 482
>gi|76154655|gb|AAX26095.2| SJCHGC05044 protein [Schistosoma japonicum]
Length = 214
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 96/158 (60%)
Query: 168 SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENG 227
SS+ G+I++ETNFR+YAY+ S L +L LFSK+ + PNL+V IT++S+ A G
Sbjct: 52 SSSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRG 111
Query: 228 ITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 287
ITA QI+SFL NAHP + P +P + DQIRLWE + +R Y+ F F
Sbjct: 112 ITANQILSFLTSNAHPDMLLSNPILPPTLTDQIRLWELERDRFVFQEGCLYEHFSRNTDF 171
Query: 288 EAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
E DYA++ LLWE+P++ +VV H +R+F +
Sbjct: 172 ELVRDYAKNIGVLLWENPERRLMVVSKSGHEDVRKFWK 209
>gi|432098035|gb|ELK27922.1| General transcription factor IIH subunit 4 [Myotis davidii]
Length = 377
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 138/258 (53%), Gaps = 44/258 (17%)
Query: 73 FLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMI 132
FLL+DT AQLWY + +++ +Q RG++ +++SFL +LSF G+ Y++ +S+ ++
Sbjct: 159 FLLLDTPAQLWYFMLQHLQTAQSRGMDLVEILSFLFQLSFSSLGKDYSVEGMSDSRR--- 215
Query: 133 KDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGFIVVETNFRMYAYSTS 190
+ GLV Q+ RK + PT+LA +LS ++ + +A + GFIVVETN+++YAY+ S
Sbjct: 216 ----EFGLV-FQRKRKSRRYYPTRLAISLSSGVSGAGGTAHQPGFIVVETNYQLYAYTES 270
Query: 191 KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMP 250
+L ++ LFS++ Y+ PN++V + P
Sbjct: 271 ELQIALIALFSEMLYRFPNMVVA----------------------------------QTP 296
Query: 251 SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRL 310
+P + DQIRLWE + +R+ T Y++F S+ F+ A + L++E+ K +
Sbjct: 297 VLPPTITDQIRLWELERDRLLFTEGVLYNQFLSQVDFDLLLARAWELGALVFENMAKQLM 356
Query: 311 VVKAEIHMHMREFLRGQN 328
VV H ++ F + Q
Sbjct: 357 VVTPAGHREVKRFWKQQK 374
>gi|321265552|ref|XP_003197492.1| subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Cryptococcus gattii WM276]
gi|317463972|gb|ADV25705.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes,
putative [Cryptococcus gattii WM276]
Length = 481
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 147/279 (52%), Gaps = 9/279 (3%)
Query: 54 GLLSRRDKEAPRLT--ESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELS 111
G +SRR+ RLT GFQFLL QLW I+ Y+S + ++++S L
Sbjct: 195 GDMSRRNPNIYRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANSERSSEVLSMFFSLG 254
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----SMSLTD 167
G+ Y+ + + + D A G + + + F PT LAT+L + ++
Sbjct: 255 CMQLGQDYSASNSFPHAQEALNDLAQYGFI-YKPSPDSDQFWPTHLATSLCSGDASAIQS 313
Query: 168 SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENG 227
SA + F+++ETN+++YAY++++L IL LF + + PNL+VG + ++ + A E G
Sbjct: 314 QSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKG 373
Query: 228 ITAEQIISFLQQNAHPRVADRMPS-VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 286
I+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ Y EF S+++
Sbjct: 374 ISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMY-EFFSKEL 432
Query: 287 FEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
F+ + A+ + L + L ++ + EF++
Sbjct: 433 FDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|402592023|gb|EJW85952.1| transcription factor Tfb2 family protein [Wuchereria bancrofti]
Length = 470
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 150/303 (49%), Gaps = 22/303 (7%)
Query: 44 SSSMMKVFQRGLL--SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
S + ++F+ L S D +T +GFQFLL++ Q+W + Y + GI+
Sbjct: 161 SGTTKRLFRSAGLTSSGNDDGDIEITSAGFQFLLLNRPEQIWTYLLHYFHMQEVAGIDII 220
Query: 102 DLISFLLELSFHVAGE---AYNLNTLSEIQKSMIKDFA----DLGLVKLQQGRKENWFIP 154
+ FL ++ E + E IKDF +LGLV +++ RK+ F
Sbjct: 221 KELDFLFKVVNDSDKERPAGSRAFVIDENWPETIKDFLIHLRELGLVFIRK-RKDGVFFL 279
Query: 155 TKLATNLSMSLTDSSARKE-----GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPN 209
T L +L+ S A E GF++VETN+R+YAY+ S L IL F+++ Y+ +
Sbjct: 280 TPLLNHLTGISNTSEASMENRNQHGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFND 339
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHP-------RVADRMPSVPENVCDQIRL 262
+ VG +++E++ AF+ GITA QII+FL NAHP + SVP V DQI+L
Sbjct: 340 MSVGVLSREAVRRAFQVGITAAQIIAFLSTNAHPITYAVTTEYGRMIQSVPITVADQIQL 399
Query: 263 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMRE 322
WE + R+ A Y F S + Y Q+ LLW + +V+ E H +++
Sbjct: 400 WEDERRRLTFCNATVYSSFESEKEYFGLKGYVISQNILLWCHDVQRLMVITEEGHENVKA 459
Query: 323 FLR 325
+ +
Sbjct: 460 WWK 462
>gi|398406290|ref|XP_003854611.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
gi|339474494|gb|EGP89587.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
Length = 493
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 135/250 (54%), Gaps = 25/250 (10%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T++GF FLL + NAQ+W + Y+ ++ ++ D++SFL L G Y+ + L+
Sbjct: 201 ITQAGFTFLLEEVNAQVWSLAVVYLRVCEDLQMDPVDVLSFLFTLGSLELGIPYSTSNLT 260
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--------------- 170
Q+ M+ D D GL+ + + PT+LAT L+ +D+ A
Sbjct: 261 LTQQHMLDDLQDFGLI-YRSSPTATAYYPTRLATTLT---SDAPALPNNTSSTTTTAATE 316
Query: 171 -RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGIT 229
++G+I++ETN+R+YAY++S L IL LFS + + PNLI ITK S+ +A IT
Sbjct: 317 SNEKGYIILETNYRLYAYTSSPLQISILSLFSTLHTRYPNLITAKITKSSIASAISQSIT 376
Query: 230 AEQIISFLQQNAHP---RVADRM--PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 284
++QII++L +AHP R A M P +P V DQIRLW+ + R+ Y +
Sbjct: 377 SDQIITYLSTHAHPVLRRQAAIMSAPILPPTVVDQIRLWQIEGERMTTWKGFYIRDVGGW 436
Query: 285 DVFEAACDYA 294
+ + A +YA
Sbjct: 437 EEYVKAVEYA 446
>gi|401825125|ref|XP_003886658.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
gi|395459803|gb|AFM97677.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
Length = 414
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 139/264 (52%), Gaps = 23/264 (8%)
Query: 66 LTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLELSFHVAGEAYNLN 122
+T GF+FLL QLW +V +Y S + I+ + L ELS G AY+
Sbjct: 167 ITNRGFEFLLKTKKEQLWCLVLLSLKYFLGSVDEEIHALEA---LFELSTKAVGIAYHRT 223
Query: 123 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSAR-KEGFIVVETN 181
+ ++K LG++KL KE+ I + L ++S R + FI+VETN
Sbjct: 224 --DRMDARLLKYLEALGILKLY---KESLAIGKSF-----VQLFEASERNRREFIIVETN 273
Query: 182 FRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 241
++YAY+ S+ ++ LF V LPNLI G+IT+ES+ AF+ GIT +QII FL+ +
Sbjct: 274 NKIYAYTNSEYEKSVIHLFCSVSVNLPNLIKGSITEESVNVAFDKGITGKQIIHFLEASV 333
Query: 242 HPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
P S+P + QI +WES NR+ M P + Y F + ++ ++ ++S L+
Sbjct: 334 KP------GSLPPAISSQIMIWESKRNRIFMAPGYIYSNFLNLSDYQRVLEFCTERSYLI 387
Query: 302 WEDPKKMRLVVKAEIHMHMREFLR 325
D K +VVK E H ++EF++
Sbjct: 388 ESDVDKRMIVVKVEGHELVKEFIK 411
>gi|405123868|gb|AFR98631.1| transcription factor TFIIH complex subunit Tfb2 [Cryptococcus
neoformans var. grubii H99]
Length = 481
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 147/280 (52%), Gaps = 11/280 (3%)
Query: 54 GLLSRRDKEAPRLT--ESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELS 111
G ++ R+ RLT GFQFLL QLW I+ Y+S + ++++S L
Sbjct: 195 GDMTGRNPNINRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANSERSSEVLSMFFSLG 254
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLV-KLQQGRKENWFIPTKLATNL----SMSLT 166
G+ Y+ + + + D A G + K G + W PT LAT+L + ++
Sbjct: 255 CMQLGQDYSASKSFPHAQEALDDLAQYGFIYKSSPGSDQFW--PTHLATSLCSGDASAIQ 312
Query: 167 DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFEN 226
SA + F+++ETN+++YAY++++L IL LF + + PNL+VG + ++ + A E
Sbjct: 313 SQSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEK 372
Query: 227 GITAEQIISFLQQNAHPRVADRMPS-VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
GI+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ Y EF S++
Sbjct: 373 GISAGQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMY-EFFSKE 431
Query: 286 VFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+F+ + A+ + L + L ++ + EF++
Sbjct: 432 LFDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|303388087|ref|XP_003072278.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301417|gb|ADM10918.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
Length = 414
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 145/276 (52%), Gaps = 27/276 (9%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLISFLLEL 110
GLL R + +T GF+FLL QLW +V +Y S E ++ + I EL
Sbjct: 159 GLLGRDEN----ITNRGFEFLLKTKKEQLWCLVLLSLKYFLKSVEEEVSTLEAI---FEL 211
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA 170
S G Y + S + K ++K LG++KL EN I + L ++S
Sbjct: 212 STKNVGTVYRHS--SSMDKRLLKYLEVLGILKLYG---ENLAIRRSF-----VQLFEASE 261
Query: 171 R-KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGIT 229
R + FI+VETN ++YAY+ S+ ++ LF V + LPNL G+IT+ES+ AF+ GIT
Sbjct: 262 RNRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVSFNLPNLTKGSITEESVNAAFDKGIT 321
Query: 230 AEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 289
QII FL+ ++ P S+P + +QI +WES NR+ M P + Y F + ++
Sbjct: 322 GRQIIHFLEASSKP------GSLPPAIINQIIIWESKRNRIFMAPGYLYSNFLNLSDYQK 375
Query: 290 ACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
++ +++ L+ D + +VV + H+ ++EF++
Sbjct: 376 VLEFCSERNYLIESDIDRRMIVVNPKGHVFVKEFIK 411
>gi|365758016|gb|EHM99881.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 419
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 47/227 (20%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ L
Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDAL 242
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---------------------- 162
SE Q+ M++D D GLV Q+ ++ F PTKLA L+
Sbjct: 243 SETQRIMLQDMRDYGLV-FQKHLNDSIFYPTKLALMLTSDTKTIISASNAMDSVLRQNRE 301
Query: 163 -----------MSLTDSSARKE-------------GFIVVETNFRMYAYSTSKLHCEILR 198
S TD++A + G ++VETNF++Y+YS S L +L
Sbjct: 302 EPSVNEDGANGKSTTDTTASDDLNKAGSKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLS 361
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 245
LF ++ + N+++G IT+ES+ NA NGITA+QII++L+ +AHP++
Sbjct: 362 LFVHLKARFVNMVLGQITRESIRNALTNGITADQIIAYLETHAHPQM 408
>gi|134118870|ref|XP_771938.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254542|gb|EAL17291.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 481
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 140/265 (52%), Gaps = 7/265 (2%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL QLW I+ Y+S + ++++S L G+ Y+ +
Sbjct: 209 ITSKGFQFLLEKRQTQLWEILMYYLSAKEANSERSSEVLSMFFSLGCMQLGQDYSASNSF 268
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----SMSLTDSSARKEGFIVVETN 181
+ + D A G + + + F PT LAT+L + ++ SA + F+++ETN
Sbjct: 269 PGAQEALDDLAQYGFI-YKSSPDSDQFWPTHLATSLCSGDASAIQSQSADDKRFLILETN 327
Query: 182 FRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 241
+++YAY++++L IL LF + + PNL+VG + ++ + A E GI+A QII++L +A
Sbjct: 328 YKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGISARQIIAYLSSHA 387
Query: 242 HPRVADRMPS-VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
HP++ + P + + DQ+ LW+ + NR++ Y EF S+++F+ + A+ + L
Sbjct: 388 HPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMY-EFFSKELFDDTVNEAKANAAL 446
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLR 325
+ L ++ + EF++
Sbjct: 447 QHAATSQKLLFIEPHTKPAITEFVK 471
>gi|58262306|ref|XP_568563.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230737|gb|AAW47046.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 481
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 140/265 (52%), Gaps = 7/265 (2%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL QLW I+ Y+S + ++++S L G+ Y+ +
Sbjct: 209 ITSKGFQFLLEKRQTQLWEILMYYLSAKEANSERSSEVLSMFFSLGCMQLGQDYSASNSF 268
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL----SMSLTDSSARKEGFIVVETN 181
+ + D A G + + + F PT LAT+L + ++ SA + F+++ETN
Sbjct: 269 PGAQEALDDLAQYGFI-YKSSPDSDQFWPTHLATSLCSGDASAIQSQSADDKRFLILETN 327
Query: 182 FRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 241
+++YAY++++L IL LF + + PNL+VG + ++ + A E GI+A QII++L +A
Sbjct: 328 YKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGISARQIIAYLSSHA 387
Query: 242 HPRVADRMPS-VPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
HP++ + P + + DQ+ LW+ + NR++ Y EF S+++F+ + A+ + L
Sbjct: 388 HPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMY-EFFSKELFDDTVNEAKANAAL 446
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLR 325
+ L ++ + EF++
Sbjct: 447 QHAAISQKLLFIEPHTKPAITEFVK 471
>gi|396080769|gb|AFN82390.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
romaleae SJ-2008]
Length = 414
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 28/282 (9%)
Query: 49 KVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQERGINQADLIS 105
+V G L R+D+ +T GF+FLL QLW +V +Y S E I +
Sbjct: 153 EVLMFGGLLRKDRN---ITNRGFEFLLKTKKEQLWCLVLLSLKYFLRSVEEEIYALEA-- 207
Query: 106 FLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS-MS 164
L ELS A++ + + ++K LG++++ R LA S +
Sbjct: 208 -LFELSTKTIETAHHQD--GRMDGRLLKYLEALGILRVCGER---------LAIGRSFVQ 255
Query: 165 LTDSSAR-KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
L ++S R + FI+VETN ++YAY+ S+ ++ LF V LPNLI G+IT+ES+ A
Sbjct: 256 LFEASERNRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVSVSLPNLIKGSITEESVNVA 315
Query: 224 FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 283
F+ GIT +QII FL+ + P S+P + QI +WES NR+ M P + Y F +
Sbjct: 316 FDKGITGKQIIHFLEASVKP------GSLPPAITSQIMIWESKRNRIFMVPGYIYSNFLN 369
Query: 284 RDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
++ ++ ++S L+ D K +VVK E H +REF++
Sbjct: 370 LSDYQRVLEFCTERSYLIESDVGKRMIVVKLEGHELVREFIK 411
>gi|323455511|gb|EGB11379.1| hypothetical protein AURANDRAFT_52511 [Aureococcus anophagefferens]
Length = 291
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 19/221 (8%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T G FLL + + Q+W +V EYI + G + ++++ +L L++ GE Y ++ LS
Sbjct: 12 VTGRGVDFLLKERHEQVWALVDEYIRAA---GDAKGEVVALVLTLAYATPGEGYAIHELS 68
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS--ARKEGF------IV 177
E QK+ + LGLV ++ + F PT L +++ S+ AR G ++
Sbjct: 69 EAQKAALDVLFALGLV-YRRNASSSRFYPTTLGVDVAFGARRSAGGARAGGDFRRPVDVI 127
Query: 178 VETNFRMYAYS-----TSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 232
V+TNF++ AY+ TS L L LF+++ +LPNL+VG I+++++ + GI Q
Sbjct: 128 VQTNFQVLAYTDAGVNTSTLVLATLNLFAELTTRLPNLVVGTISRDAIKRCVDRGIRVPQ 187
Query: 233 IISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMT 273
I+ FL+ +AHP A + VP+NV DQ+ LW + NRV T
Sbjct: 188 IVKFLRAHAHP--AMKASGVPQNVTDQMALWAGEGNRVAFT 226
>gi|85691005|ref|XP_965902.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi GB-M1]
gi|19068469|emb|CAD24937.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
gi|449329766|gb|AGE96035.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi]
Length = 414
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 152/300 (50%), Gaps = 31/300 (10%)
Query: 32 GSSTQAE-RPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVR--- 87
GS E R F S + +F GLL R D+ +T GF+FLL QLW +V
Sbjct: 137 GSVVNRECRIEAFGVSEVLMFG-GLLGR-DRN---ITNRGFEFLLKTKKEQLWCLVLLSL 191
Query: 88 EYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGR 147
+Y S E I ++ L ELS G Y + ++ + + K LG+++L +
Sbjct: 192 KYFLGSVEEEI---AVLEALFELSARAVGTVYR--QVDQMDRRLFKYLEALGILRLYE-- 244
Query: 148 KENWFIPTKLATNLS-MSLTDSSAR-KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
LA S + L ++S R + FI+VETN ++YAY+ S+ ++ LF V
Sbjct: 245 -------KGLAIGRSFVQLFEASERNRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVTV 297
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWES 265
LPNLI G IT+ES+ AF+ GIT +QII FL+ + R S+P + +QI +WES
Sbjct: 298 NLPNLIKGIITEESVNVAFDKGITGKQIIHFLEASV------RQGSLPPAIRNQIVIWES 351
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
NR+ M P + Y F + ++ ++ + L+ D K +VVK E H ++EF++
Sbjct: 352 KRNRIFMVPGYLYSNFLNLSDYQKVLEFCIRGNHLVESDVDKRMIVVKLEGHSLVKEFVK 411
>gi|358333989|dbj|GAA34589.2| transcription initiation factor TFIIH subunit 4 [Clonorchis
sinensis]
Length = 456
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 120/260 (46%), Gaps = 54/260 (20%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T+ GF FLLM Q+ + Y + +Y ++ L+
Sbjct: 186 ITKHGFHFLLMSRPDQVRLFLLHYFDYLK-----------------------SYPVDALT 222
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL-------------------- 165
Q+ +++ +LGL Q+ R F T LAT LS S
Sbjct: 223 APQQEVLQQMRELGLA-YQRKRTAPRFYVTPLATVLSGSRCHQPAMSSGSVLSAIPTGVS 281
Query: 166 ----------TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAI 215
T SS G+I++ETNFR+YAY+ S L +L LFSK+ + PNL+V I
Sbjct: 282 HLEGTDSVQPTASSTSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADI 341
Query: 216 TKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPA 275
T++S+ A GITA+QIISFL NAHP + P +P + DQIRLWE + +R
Sbjct: 342 TRDSVREALIRGITADQIISFLTTNAHPDMLREPPILPPTLVDQIRLWELERDRFVFQEG 401
Query: 276 HYYDEFPSRDVFEAACDYAR 295
Y++F FE D+A+
Sbjct: 402 CLYEQFSKSADFEMVRDFAK 421
>gi|300707677|ref|XP_002996037.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
gi|239605297|gb|EEQ82366.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
Length = 403
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 132/262 (50%), Gaps = 18/262 (6%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GF+FLL Q W+++ + I Q ++ELS + Y L
Sbjct: 157 ITNKGFEFLLKPRYDQYWFLIIAALKFYCVDEILQISNFMSIMELSNMLPIYKYKLK--K 214
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMY 185
++ K + LGL+KL+ + T S +K FI++ETNF++Y
Sbjct: 215 DVNKKFYDFLSYLGLIKLEND----------ILTIYHNLFVKSDTKKLRFILLETNFKLY 264
Query: 186 AYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 245
AY++S I++LFS + ++PNLI +IT+ESL NAF G+T++QII+FL+ +
Sbjct: 265 AYTSSVYEMSIIQLFSNIYLKMPNLIKASITEESLSNAFSKGVTSQQIINFLKSYS---- 320
Query: 246 ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
+P + QI +WE+ R+++ P + Y F + ++ + ++ +D
Sbjct: 321 --LFEDIPVAIISQIIIWETKRKRIKIFPGYLYSNFLNLIDYQKVVKFCLSNDCIIEKDD 378
Query: 306 KKMRLVVKAEIHMHMREFLRGQ 327
+K +V+K + + +++F++ Q
Sbjct: 379 EKRMIVIKPDHNEVVKKFVKQQ 400
>gi|412992644|emb|CCO18624.1| predicted protein [Bathycoccus prasinos]
Length = 464
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 43/228 (18%)
Query: 47 MMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI------------SNSQ 94
+ K+F L +D R+T GF FLL T+ Q+W ++ Y + ++
Sbjct: 237 LRKLFYAARLITKD---GRITSEGFSFLLGATSEQIWILLARYARGGDFEKKMKNKTTNE 293
Query: 95 ERGI---------------------NQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIK 133
E G + A ++FL+ LSF G Y+ LSE ++ +
Sbjct: 294 ENGEGDKMETNGEDEKQQHKLKSDESSAAAMAFLVRLSFQHPGRKYSKANLSEAERRVAS 353
Query: 134 DFADLGLV--KLQQGRKENWFIPTKLATNLSMSLTDSSA-----RKEGFIVVETNFRMYA 186
+ LG++ NW++PT L+ LS T SSA R +G I+VETNFR+YA
Sbjct: 354 HLSALGVLYENEDDENDNNWYVPTVLSAGLSSVSTTSSAKSALARIDGHIIVETNFRVYA 413
Query: 187 YSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQII 234
Y+ S+L E+LRLF++ +Y+LPN VG IT++S+ +A GI+ +QI+
Sbjct: 414 YTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPDQIV 461
>gi|403348380|gb|EJY73625.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Oxytricha trifallax]
Length = 532
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 111/195 (56%), Gaps = 25/195 (12%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
+LT +GFQ++LMD +Q+ I+ YI ++ G N +++ F+ L+ N N
Sbjct: 204 QLTVNGFQYILMDIASQVQNILLNYIQTAETSGRNVVEVLGFIFNLTLTEPNYDGNENV- 262
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS---------------- 168
S+++DF D+GLV +++ +K F+ T L + S T
Sbjct: 263 ----NSILRDFDDMGLVGMERRQK---FVITSLLQSFLQSQTGQLQKSSDSSSSNVIDAQ 315
Query: 169 -SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENG 227
S ++ F++VETNF++YAY++S L+ +LR F +VE PNL+VG +T++SL AF+ G
Sbjct: 316 RSQSQDKFLIVETNFKVYAYTSSDLYRALLRQFIRVECIFPNLVVGTLTRKSLQKAFQRG 375
Query: 228 ITAEQIISFLQQNAH 242
I++ QI+SFL+ + H
Sbjct: 376 ISSGQILSFLESHIH 390
>gi|429962184|gb|ELA41728.1| hypothetical protein VICG_01232 [Vittaforma corneae ATCC 50505]
Length = 449
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 41/292 (14%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GF+FLL+ QLW+++ I + ++++ L E+ Y ++
Sbjct: 172 QITNKGFEFLLLARKDQLWFLIVNAIKYHSRDSLEESEMFISLAEILMKRRCGPYICSSF 231
Query: 125 SEIQKSMIKDFAD-LG-LVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEG-------- 174
S F D +G L + Q +++ + + + L DS+ G
Sbjct: 232 SSWHS-----FLDSIGVLFVISQDNNLVFYVNNSVLYD-KVPLADSAMTHHGTAGIDDIY 285
Query: 175 -----------------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITK 217
FIV+ETNF++YAY+++ +L LFSK Y PNLI +
Sbjct: 286 DIDYTKPNIPINKASNKFIVLETNFKIYAYTSTAYDKSVLSLFSKTVYVFPNLIKACFDE 345
Query: 218 ESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHY 277
ESL +AF GITA+QII +LQ+++ VP+N+ +QI +WE +R+ +
Sbjct: 346 ESLLSAFNKGITAKQIIKYLQEHS--------EEVPKNIVNQISIWEHRQHRIRARNGYL 397
Query: 278 YDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y +F F Y + GL++ D K +V + IH ++ F++ K
Sbjct: 398 YHDFIHLSDFHRVLRYVESKGGLIYRDEVKRMIVGEERIHESVKNFIKEMQK 449
>gi|440493551|gb|ELQ76006.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Trachipleistophora
hominis]
Length = 426
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 146/313 (46%), Gaps = 39/313 (12%)
Query: 38 ERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERG 97
+R + ++ V Q L KE +T SGF+FLL Q+W+++ I +
Sbjct: 132 DRNAKVNEVVLDVLQYAKLVNIIKE---ITHSGFEFLLKSRKEQMWFLILNGILMLGKNY 188
Query: 98 INQADLISFLL------------ELSFHVAGEAYNLNT---------LSEIQKSMIKDFA 136
++ +I F + E +N NT + ++K +
Sbjct: 189 VDWLTMIVFEMGMYERHCWLKINESKIFGTARKHNKNTNIDPVSDKEAHSVLVRLLKYLS 248
Query: 137 DLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEI 196
LG+++ + PT L S+A ++ F++VETN+++YAY+TS I
Sbjct: 249 YLGIIQYSNDMVK----PTAEY----FLLFSSAAIQDSFLIVETNYKLYAYTTSSHELSI 300
Query: 197 LRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENV 256
++LFS++ +LPNL+ IT+ES+ AF GIT +QI+ +L + + +P V
Sbjct: 301 IKLFSQIVRELPNLVTAHITEESVNAAFLKGITGQQIVDYLTEKSKSE-------LPPVV 353
Query: 257 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEI 316
+QI +WE +R++ A Y F + + +E Y R++ L+ D + LVV+ E
Sbjct: 354 LEQILIWERQRDRMKCIDAVIYSHFMTYNEYEITYRYCREKGALIDHDEFRRLLVVRLEC 413
Query: 317 HMHMREFLRGQNK 329
H ++ F++ K
Sbjct: 414 HNEVKNFIKNNIK 426
>gi|428181353|gb|EKX50217.1| TFB2 transcription factor B2 nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 463
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 29/255 (11%)
Query: 53 RGLLSRRDKE-----------APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
RG+L DK AP++T GFQFLL Q+ ++ ++ +
Sbjct: 178 RGILVGEDKNGNSFMMSLQNLAPKITAFGFQFLLRPLRNQILQMLMHVLTKKGSENKDLQ 237
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL 161
D +S + +LSF G Y L+ LS + +I DLG V + ++ +F PT L NL
Sbjct: 238 DSLSCIFQLSFCTLGAGYRLDLLSRSNQELITSLHDLGAVYFKPNDRQ-YFFPTPLIVNL 296
Query: 162 -SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
+ S S + + E + A ILRLF++ Y+ P++I+ IT+ES+
Sbjct: 297 CTESEVPSGPSTDAGVADEFSAEPAA--------GILRLFTRPIYKFPHMIIAVITRESI 348
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
NA II +L+ +AHP+ + P VPE V DQI WE + R+ PA Y
Sbjct: 349 RNAL--------IIEYLRMHAHPQCLENWPIVPEVVTDQICFWEQERCRIRAEPAVAYHN 400
Query: 281 FPSRDVFEAACDYAR 295
F S + A AR
Sbjct: 401 FFSGEAHRACEKEAR 415
>gi|402465832|gb|EJW01474.1| hypothetical protein EDEG_03937 [Edhazardia aedis USNM 41457]
Length = 465
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 149/299 (49%), Gaps = 34/299 (11%)
Query: 16 QGFQPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLL 75
+ FQ + + + +D Q E P N + F R L + +T +GF FLL
Sbjct: 171 KSFQKYEEILHLIVD-----QQETPKNEEILKLLTFSRIL-----NKNLEITNTGFDFLL 220
Query: 76 MDTNAQLWYIVR---EYISNSQERGINQADLISFLLELSFHVAGEAYNL-NTLSEIQKSM 131
QLW ++ +Y+ ++ + I + D I + EL ++Y + N S IQ +
Sbjct: 221 KTRKEQLWILLITTIKYLKSTMK--IEEKDFILLIFELCEKRPYKSYKIINCPSSIQ-TC 277
Query: 132 IKDFADLGLVKLQQGRKENWFI--PTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYST 189
I + LGL L+ K N I + L NL ++ E F+ +ETNF++YAY+T
Sbjct: 278 INYMSKLGL--LENSIKNNTVILSISPLFINL---FEENLVLSESFMYIETNFKLYAYTT 332
Query: 190 SKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM 249
SK IL LFSK+ +LPNLI I ++S+ AF+ I+A+QI +L+
Sbjct: 333 SKYDFSILSLFSKISCKLPNLISAIINEDSVNTAFDKKISAKQISYYLKSKG-------- 384
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL--LWEDPK 306
+VP+NV +Q+ +WES NR++ + + F + F+ A D +++ L ++ED +
Sbjct: 385 KNVPKNVVEQVYIWESKRNRIKTSECTLFKGFLNLMDFKKAVDVCKEKHWLVDVYEDKR 443
>gi|361130709|gb|EHL02459.1| putative RNA polymerase II transcription factor B subunit 2 [Glarea
lozoyensis 74030]
Length = 210
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 32/204 (15%)
Query: 131 MIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKE----------------G 174
M+++ D GLV + K+ +F PT+LAT L+ +D+SA + G
Sbjct: 1 MLENLVDFGLVYIPPSVKDQFF-PTRLATTLT---SDASALRSITAGFESALSTGSGTAG 56
Query: 175 FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQII 234
FI++ETN+ S L +L LF+K+ + PN++ G +T+ES+Y A +GI+++QII
Sbjct: 57 FIIIETNYH------SPLQIAVLALFTKLTTRYPNMVTGRVTRESVYRAVSSGISSDQII 110
Query: 235 SFLQQNAHPRVADRM------PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
++L +AHP + P +P V DQIRLW+ + R++ T + +F S D ++
Sbjct: 111 TYLSTHAHPELLKASAAKGGGPVLPPTVVDQIRLWQIENERMKTTYGFLFKDFESTDEYK 170
Query: 289 AACDYARDQSGLLWEDPKKMRLVV 312
YA + L W + + V
Sbjct: 171 KLLKYADEIGVLTWASKTEEKFFV 194
>gi|66358470|ref|XP_626413.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
gi|46227864|gb|EAK88784.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
Length = 709
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 148 KENWFIPTKLATNLSMS----LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
+E W T +N+ ++ L+ +S R E I+V++NFR+Y Y+ S L +ILR +V
Sbjct: 496 EELWHKSTTETSNVKINEPNCLSMNSTRLEAGIIVQSNFRIYCYTASPLQAKILRHLCQV 555
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM-----PSVPENVCD 258
+ + PN+I G +T++ L +A+ G++AEQI+ F NAHP + R +P NV
Sbjct: 556 KVRGPNIICGILTRKGLLSAYSMGVSAEQILRFFSSNAHPIILRRFMLEGTSIIPVNVET 615
Query: 259 QIRLWESDLNRVEMTPAHYYDEFPSR----DVFEAACDYARDQSGLLWEDP--------- 305
Q++LWE D NR++++ A + ++ + +F YAR + LL+ P
Sbjct: 616 QLKLWEKDKNRLKISHASTFSDWGASPNDIQLFRQTILYARSKDILLYNSPIELTEKELN 675
Query: 306 ------KKMRLVVKAEIHMHMREFLRGQ 327
KK+ LV+K E ++ F+R +
Sbjct: 676 LNVELQKKIILVIKQEYEDDIKTFIRTK 703
>gi|397564488|gb|EJK44232.1| hypothetical protein THAOC_37249 [Thalassiosira oceanica]
Length = 971
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 21/263 (7%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGIN---QADLISFLLELSFHVAGEAYNLN 122
+T G++F+L DTNAQ+W V +Y+++ + + + +SFL+ L GE Y +
Sbjct: 289 ITSKGYEFMLRDTNAQVWQFVLQYLNSMAHHDLKDTIRKEALSFLICLGSCRIGEGYFSS 348
Query: 123 TL-SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETN 181
L S+ + ++KDFA GL+ + + + F PT++A NL S +R+ ++
Sbjct: 349 VLGSKSARVLMKDFARFGLLFVCRVAGKTAFYPTRVAVNLVASNEKGGSRQSDALLPSVA 408
Query: 182 FR------MYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
M A ++ H ++ +LPN++ +T++S+ +AF G+TA+QI+
Sbjct: 409 ATRSLEEAMNAPDPTRSHLAVISY-----KRLPNVVFFHLTRDSIKSAFRLGVTADQILR 463
Query: 236 FLQQNAHPRV-ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD--VFEAACD 292
FLQ +AHP + + P P NV DQI LW+ + RV M + RD F A
Sbjct: 464 FLQVHAHPMMRSGNQPMPPANVRDQILLWDRERRRVVMDEVWVHQ---CRDDAEFSAVGM 520
Query: 293 YARDQSGLLWEDPKKMRLVVKAE 315
YA D L W + +L ++ +
Sbjct: 521 YASDSEALAWGNAHTNKLYLQCD 543
>gi|429965574|gb|ELA47571.1| hypothetical protein VCUG_00894 [Vavraia culicis 'floridensis']
Length = 424
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 54/354 (15%)
Query: 2 VELCQGNQCLLVLLQGFQPWRTLRPMPLDNGSSTQA-ERPTNFSSSMMKVFQRGLLSRRD 60
+EL + C + Q T + DN +R + ++ V Q L
Sbjct: 99 MELVRVRNCF----EAMQCVNTANTLSFDNILRMLVNDRNAWVNEVVLDVLQYAKLINVK 154
Query: 61 KEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQAD-LISFLLELSFH------ 113
KE +T SGF+FLL + Q+W+++ ++ G + D LI + E+ +
Sbjct: 155 KE---ITHSGFEFLLKNRKEQMWFLI---LNGILMLGKSYVDWLIMIVFEMGMYERYRWL 208
Query: 114 ----------VAGEAYNLNTLS-----EIQKSMIKDFADLGLVKLQQGR---KENWFIPT 155
V + N ++ +I +K + LG+++ E +F+
Sbjct: 209 KVNEAKIFCDVCEHSNNTGSVGGGEEGDILFRFLKYLSYLGIIQHSNDMVKPTEEYFL-- 266
Query: 156 KLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAI 215
L S++ ++ F+VVETN+++YAY+TS I++LF ++ +LPNL+V I
Sbjct: 267 ---------LFSSASTQDSFLVVETNYKLYAYTTSSHELSIIKLFCQIIRELPNLVVAHI 317
Query: 216 TKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPA 275
T+ES+ AF GIT +QI+ +L + + +P V +QI +WE +R++ A
Sbjct: 318 TEESVNAAFVKGITGQQIVDYLNEKSRSE-------LPVVVLEQILIWERKRDRMKCMDA 370
Query: 276 HYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
Y F + +E Y +++ L+ D + LVVK E H ++ F++ K
Sbjct: 371 VIYSHFMTYGEYEITYKYCKEKGALVDYDEFRRLLVVKLEYHNDVKNFIKSNIK 424
>gi|387595518|gb|EIJ93142.1| hypothetical protein NEPG_02098 [Nematocida parisii ERTm1]
Length = 398
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 129/276 (46%), Gaps = 22/276 (7%)
Query: 51 FQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
+R +L+ + LT GF FLL QLW ++ +I E N+ I L EL
Sbjct: 140 IRRLMLNTKIINKEGLTHKGFNFLLTGKKRQLWTLLLAHIQEDPETAENE---ILVLCEL 196
Query: 111 SFHVAGEAYNLNTLSEIQKS-MIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS 169
Y + QKS ++ F LGL+ ++G K + S+ L D
Sbjct: 197 LVKDPKRTY---AVDRSQKSKLLGLFESLGLIFFEKG-------LVKFSPTFSL-LFDDE 245
Query: 170 ARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGIT 229
E F+V+E+NFR+Y YS L I+ LFS + PN+IV I ++S+ A +GIT
Sbjct: 246 EGAEKFLVLESNFRLYIYSNRPLDTFIISLFSIKSREFPNMIVAMINEDSIRQALMHGIT 305
Query: 230 AEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 289
A QI +L QN+ M + ENV +QIRLWE +NR+ ++ + F + F
Sbjct: 306 AGQIRVYLNQNS-------MYEINENVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLL 358
Query: 290 ACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
Y + + +K LVV E + ++ F+R
Sbjct: 359 VESYCENNNIDHRSYREKRMLVVGIENYESVKSFIR 394
>gi|422294120|gb|EKU21420.1| transcription initiation factor TFIIH subunit 4, partial
[Nannochloropsis gaditana CCMP526]
Length = 213
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 29/214 (13%)
Query: 116 GEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSAR---- 171
G Y + LS Q+++++ F GL+ Q R F PT +A NL T R
Sbjct: 1 GRPYPVRALSPTQQALLEKFISFGLI-YQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRG 59
Query: 172 -----KEG---------------FIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
EG ++VETN+++ AY++S LH E+LR+F+ V +LPN++
Sbjct: 60 HGHVGPEGRENTKELRLVDPSQLAVIVETNYQLVAYTSSSLHVEMLRIFTDVRCRLPNVV 119
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPRV-ADRMPSVPENVCDQIRLWESDLNRV 270
+G IT+ S+ A +GITA I+SFL+ + H V A + +PENV QI LW + +RV
Sbjct: 120 IGFITRASVRRAMASGITAATILSFLKTHTHVAVRAGKGRLLPENVEAQIELWHQERSRV 179
Query: 271 EMTPAHYYDEFPSRDV--FEAACDYARDQSGLLW 302
+ D S V FE YA + + + W
Sbjct: 180 KFEEVMMID-LSSLMVEEFEEVRTYAENLAVVCW 212
>gi|207340606|gb|EDZ68904.1| YPL122Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 226
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 18/171 (10%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 232
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+Q
Sbjct: 49 DGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQ 108
Query: 233 IISFLQQNAHPRV------------------ADRMPSVPENVCDQIRLWESDLNRVEMTP 274
II++L+ +AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 109 IIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYE 168
Query: 275 AHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
Y +F + + YA+D LLW+D KK + + E + + +F +
Sbjct: 169 GSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 219
>gi|387592902|gb|EIJ87926.1| hypothetical protein NEQG_01998 [Nematocida parisii ERTm3]
Length = 398
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 22/276 (7%)
Query: 51 FQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
+R +L+ + LT GF FLL QLW ++ +I E N+ I L EL
Sbjct: 140 IRRLMLNTKIINKEGLTHKGFNFLLTGKKRQLWTLLLAHIQEDPETAENE---ILVLCEL 196
Query: 111 SFHVAGEAYNLNTLSEIQKS-MIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSS 169
Y + QKS ++ F LGL+ ++G K + S+ L D
Sbjct: 197 LVKDPKRTY---AVDRSQKSKLLGLFESLGLIFFEKG-------LVKFSPTFSL-LFDDE 245
Query: 170 ARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGIT 229
E F+V+E+NFR+Y YS L I+ LFS + PN++V I ++S+ A +GIT
Sbjct: 246 EGAEKFLVLESNFRLYIYSNRPLDTFIISLFSIKSREFPNMMVAMINEDSIRQALMHGIT 305
Query: 230 AEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 289
A QI +L QN+ M + ENV +QIRLWE +NR+ ++ + F + F
Sbjct: 306 AGQIRVYLNQNS-------MYEINENVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLL 358
Query: 290 ACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
Y + + +K LVV E + ++ F+R
Sbjct: 359 VESYCENNNIDHRSYREKRMLVVGIENYESVKSFIR 394
>gi|355693906|gb|AER99491.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 143
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 84/139 (60%)
Query: 190 SKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM 249
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 2 SELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQT 61
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L++E+ K
Sbjct: 62 PVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRL 121
Query: 310 LVVKAEIHMHMREFLRGQN 328
+VV H ++ F + Q
Sbjct: 122 MVVTPAGHSDVKRFWKRQK 140
>gi|308460920|ref|XP_003092758.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
gi|308252517|gb|EFO96469.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
Length = 128
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRMPSVPENVCDQIRLWESDLN 268
VG IT+ES+ A ++GITA QIISFL+ NAHP+ + + +P V DQIRLWE +
Sbjct: 3 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGAINCLPITVADQIRLWEDERR 62
Query: 269 RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
R+++ A+ Y F S D F+ CDYA+++ LLW + ++ ++V E H ++R++ +
Sbjct: 63 RMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKLVIVNEEGHEYVRQWYK 119
>gi|378754852|gb|EHY64880.1| hypothetical protein NERG_01936 [Nematocida sp. 1 ERTm2]
Length = 396
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 121/260 (46%), Gaps = 20/260 (7%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
LT GF FLL Q+W +V +I QE + + + + E Y ++
Sbjct: 153 LTHKGFNFLLTGRKNQMWTLVLAHI---QEDLATRQEEVLVMCEFLVKDPKRMYAIDV-- 207
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMY 185
+ M+ F LGL+ ++G + ++ S+ L D E F+ +E+NFR+Y
Sbjct: 208 SYRSKMLDLFESLGLITFERG-------LVRFSSTFSL-LFDDEEGGEKFLTLESNFRLY 259
Query: 186 AYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 245
YS L I+ LFS + PN+IV I ++S+ A GITA QI +L QN+
Sbjct: 260 IYSNRPLDVFIISLFSIKIREFPNMIVAMINEDSIRQALTYGITAGQIRVYLNQNS---- 315
Query: 246 ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
M + ENV +QIRLWE +NR+ ++ + F + F Y + +
Sbjct: 316 ---MHKINENVLEQIRLWEKRMNRIHAWESYIFSNFLNYKDFLLVESYCENNNVEHRSYR 372
Query: 306 KKMRLVVKAEIHMHMREFLR 325
K LVV E + +++ F+R
Sbjct: 373 DKRVLVVGVENYDNVKSFIR 392
>gi|71033737|ref|XP_766510.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353467|gb|EAN34227.1| hypothetical protein, conserved [Theileria parva]
Length = 359
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 119/216 (55%), Gaps = 22/216 (10%)
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRK----ENWFIPTKLAT 159
+ LL LS G+ ++ L++ Q +++ +LG+V + +K + +I K T
Sbjct: 83 VELLLSLSQASCGDCFSTEGLTKTQLRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNT 142
Query: 160 NLSMSLTDS-----SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
N + + A + I+V++NF++Y Y+ S L +L +++ + PNL+VG
Sbjct: 143 NTGLPTSKDLDLSIKAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGV 202
Query: 215 ITKESLYNAFENGITAEQIISFLQQNA-HPRVADR---------MPSVPENVCDQIRLWE 264
+T+ES+ +AF++GIT+++II FL N + + ++ S+PENVC Q+++WE
Sbjct: 203 LTRESVQSAFKSGITSKEIIRFLSPNGMNSSIGNQENTLLNSTFTYSIPENVCRQLKMWE 262
Query: 265 SDLNRVEMTPA---HYYDEFPSRDVFEAACDYARDQ 297
S+ +R+E+ P+ +D+ D+F+ +A+ +
Sbjct: 263 SERDRIELCPSIVFKRWDQDFMPDLFQRTVRWAQSK 298
>gi|440295536|gb|ELP88449.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba invadens IP1]
Length = 531
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 136/272 (50%), Gaps = 21/272 (7%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T G+QFL +T Q+W ++ +Q R LI+ EL++ YN +
Sbjct: 180 QITRKGYQFLFQETKTQIWILMLSIFGPAQ-RKRRMGKLINEFFELTYLAPETCYNADPF 238
Query: 125 SEIQKSM-IKDFADLGLVKLQQGRKENWFIPTKLATNL-SMSLTDSSARKEGFIVVETNF 182
++I + + F +G++ +++N + T L + L S +L S + + ETN+
Sbjct: 239 TKIYSAAPLILFDMMGIIAY--SKEKNALVVTPLMSLLRSNALVPSDLVTKPRTITETNY 296
Query: 183 RMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 242
+Y Y+ S ++ LF + QL NL VG IT +++ AF GIT E +++FLQ
Sbjct: 297 TVYIYTESFFQVKLYSLFIRQNLQLTNLCVGRITYDTVTEAFLKGITNEMLVNFLQ---- 352
Query: 243 PRVADRMPSVPENVCDQIRLWESDLNRVEMTPA----HYYDEFP-SRDVFEAACDYARDQ 297
P++P+N+ QI LW+ +LNR++ A Y E ++++ A
Sbjct: 353 -------PNLPKNIQAQIDLWKRELNRLKEVRAVKFRFYEPELEVQKELYHLTKSEAEKM 405
Query: 298 SGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
G+++ +++ L V+ ++ ++EFLR + +
Sbjct: 406 KGVVFYKEEELTLFVRYDVAEKIKEFLRRKTR 437
>gi|84998132|ref|XP_953787.1| TFIIH subunit, Tf2b [Theileria annulata]
gi|65304784|emb|CAI73109.1| TFIIH subunit, Tf2b homologue, putative [Theileria annulata]
Length = 645
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 120/219 (54%), Gaps = 28/219 (12%)
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRK----ENWFIPTKLAT 159
+ LL LS G+ ++ L++ Q +++ +LG+V + +K + +I K T
Sbjct: 370 VELLLSLSQASCGDCFSTEGLTKTQIRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNT 429
Query: 160 N--------LSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLI 211
N L +S+ A + I+V++NF++Y Y+ S L +L +++ + PNL+
Sbjct: 430 NSVLPNSKDLDISI---KAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLV 486
Query: 212 VGAITKESLYNAFENGITAEQIISFLQQNA-HPRVADR---------MPSVPENVCDQIR 261
VG +T+ES+ +AF++GIT+++II FL N + + + S+PENVC Q++
Sbjct: 487 VGVLTRESVQSAFKSGITSKEIIRFLSPNGMNSSIGSQENTLLNSSFTYSIPENVCRQLK 546
Query: 262 LWESDLNRVEMTPA---HYYDEFPSRDVFEAACDYARDQ 297
+WES+ +R+E+ P+ +D+ D+F+ +A+ +
Sbjct: 547 MWESERDRIELCPSIVFKRWDQDFMPDLFQRTVRWAQSK 585
>gi|403221352|dbj|BAM39485.1| transcription factor IIH subunit [Theileria orientalis strain
Shintoku]
Length = 634
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 106/192 (55%), Gaps = 23/192 (11%)
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLA----- 158
+ LL LS G+ ++ L++ Q +++ +LG+V + N F L+
Sbjct: 342 VELLLALSQSKCGDCFSTENLTKTQMRLVRLLNELGIVYYKNA---NRFYIYDLSYIIGK 398
Query: 159 TNLSMSL-----TDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
+N+++ L + +A E I+V++NF++Y Y+ S L +L +++ + PNL+VG
Sbjct: 399 SNINVDLFKEFDVNKTAGNESRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVG 458
Query: 214 AITKESLYNAFENGITAEQIISFLQ--------QNAHPRVADRMPS--VPENVCDQIRLW 263
+T+ES+ +AF++GIT+ +II FL D + +PENVC Q+++W
Sbjct: 459 VLTRESVQSAFKSGITSNEIIRFLSPMKLSLSYAGTCNSFMDSFANYKIPENVCRQLKMW 518
Query: 264 ESDLNRVEMTPA 275
ES+ +R+E++PA
Sbjct: 519 ESERDRIELSPA 530
>gi|167395228|ref|XP_001741280.1| TFIIH basal transcription factor complex p52 subunit [Entamoeba
dispar SAW760]
gi|165894177|gb|EDR22239.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba dispar SAW760]
Length = 489
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 144/298 (48%), Gaps = 33/298 (11%)
Query: 42 NFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
N S++ +++F+ L + +E ++T G+QFL +T QLW I+ I Q R +
Sbjct: 160 NISNNPLRIFKDLELVK--EETRQITRKGYQFLFQETKTQLWVIMLSIIGLIQRRI---S 214
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQ-KSMIKDFADLGLVKLQQGRKENWFIPTKLATN 160
I+ + E+++ YN + ++ ++ F DLG++ +++N T L
Sbjct: 215 PFINDVFEMTYLKENIIYNCDRFKKVYGPDPLQLFNDLGIIVYY--KEQNVMAITPL--- 269
Query: 161 LSMSLTDSSAR------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
MSL S+A K+ + E N+ +Y Y+ S+ ++ RLF + +QL NL VG
Sbjct: 270 --MSLLRSNANIPSDLVKKPKTITEINYSVYIYTESQFQVDLYRLFIRKNFQLANLWVGK 327
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVE--- 271
+ +S+ AF GIT+E +I+FLQ P++P + QI LW+ ++NR +
Sbjct: 328 LNHQSVTEAFAKGITSEMLINFLQ-----------PNLPRTIQKQIDLWKKEINRFKEEH 376
Query: 272 MTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ +YD+ R +F + + + E + VK + +R F++ + +
Sbjct: 377 VVRYKFYDDAIGRQLFIIVKNESDRLKATILEKEDIRLIFVKYQYGETIRSFMKKKER 434
>gi|67483069|ref|XP_656826.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56474050|gb|EAL51440.1| hypothetical protein EHI_192400 [Entamoeba histolytica HM-1:IMSS]
gi|449706224|gb|EMD46115.1| tfiih basal transcription factor complex p52 subunit, putative
[Entamoeba histolytica KU27]
Length = 484
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 144/298 (48%), Gaps = 33/298 (11%)
Query: 42 NFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA 101
N S++ +++F+ L + +E ++T G+QFL +T QLW I+ I Q R +
Sbjct: 160 NISNNPLRIFKDLELVK--EETRQITRKGYQFLFQETKTQLWVIMLSIIGLIQRRI---S 214
Query: 102 DLISFLLELSFHVAGEAYNLNTLSEIQ-KSMIKDFADLGLVKLQQGRKENWFIPTKLATN 160
I+ + E+++ YN + ++ ++ F DLG++ +++N T L
Sbjct: 215 PFINDVFEMTYLKEHIIYNCDHFKKVYGPDPLQLFNDLGIIVYY--KEQNVMAITPL--- 269
Query: 161 LSMSLTDSSAR------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 214
MSL S+A K+ + E N+ +Y Y+ S+ ++ RLF + +QL NL VG
Sbjct: 270 --MSLLRSNANIPSDLVKKPKTITEINYSVYIYTESQFQVDLYRLFIRKNFQLANLWVGK 327
Query: 215 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVE--- 271
+ +S+ AF GIT+E +I+FLQ P++P + QI LW+ ++NR +
Sbjct: 328 LNHQSVTEAFAKGITSEMLINFLQ-----------PNLPRTIQKQIDLWKKEINRFKEEH 376
Query: 272 MTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+ +YD+ R +F + + + E + VK + +R F++ + +
Sbjct: 377 VVRYRFYDDAIGRQLFVIVKNESDRLKATILEKEDIRLIFVKYQYGETIRSFMKKKER 434
>gi|221482097|gb|EEE20458.1| tfiih, polypeptide, putative [Toxoplasma gondii GT1]
Length = 861
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 232
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 672 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 731
Query: 233 IISFLQQNAHPRVADR-----MPSVPENVCDQIRLWESDLNRVEMTPA 275
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 732 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 779
>gi|401410644|ref|XP_003884770.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
gi|325119188|emb|CBZ54742.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
Length = 868
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 232
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 679 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 738
Query: 233 IISFLQQNAHPRVADR-----MPSVPENVCDQIRLWESDLNRVEMTPA 275
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 739 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 786
>gi|237842971|ref|XP_002370783.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
gi|211968447|gb|EEB03643.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
Length = 836
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 232
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 647 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 706
Query: 233 IISFLQQNAHPRVADR-----MPSVPENVCDQIRLWESDLNRVEMTPA 275
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 707 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|221502519|gb|EEE28246.1| tfiih, polypeptide, putative [Toxoplasma gondii VEG]
Length = 836
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 232
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 647 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 706
Query: 233 IISFLQQNAHPRVADR-----MPSVPENVCDQIRLWESDLNRVEMTPA 275
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 707 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|449017614|dbj|BAM81016.1| similar to TFIIH subunit TFB2 [Cyanidioschyzon merolae strain 10D]
Length = 693
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
I+VETNFR+YAY+ S +L LF+++ Y++P + +G IT++S+ A + GITA+Q++
Sbjct: 538 IIVETNFRLYAYAASSFQVALLSLFTRILYRMPGVAIGVITRDSVRRALKCGITAKQLLH 597
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF-PSRD---VFEAAC 291
FL ++ SVP NV DQI LWE + R++ P + F P+ D F+
Sbjct: 598 FLGIHSM-----EGKSVPFNVHDQILLWELERKRIQAYPGVLLEGFEPTSDGRAFFDQLQ 652
Query: 292 DYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329
+Y + W D + LV A +RE++R Q +
Sbjct: 653 EYTVELGAQQWCDRVRQLLVADASSFERLREWIRRQAQ 690
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN-- 122
R+TE GF +LL+D +AQLW ++ Y+ N E ++ +L L L F V G Y+
Sbjct: 296 RITERGFSYLLLDIHAQLWALLEAYMENWDEARGDRLELFDLLFRLGFSVPGHIYDGGDP 355
Query: 123 TLSEIQKSMIKDFADLGLVKL---QQGRKEN 150
+LS Q M+ A++GLV L +Q R++
Sbjct: 356 SLSAAQCRMLGFLAEIGLVYLMETEQSRQDG 386
>gi|428673252|gb|EKX74165.1| conserved hypothetical protein [Babesia equi]
Length = 668
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 98/172 (56%), Gaps = 19/172 (11%)
Query: 116 GEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENW------------FIPTKLATNLSM 163
G++++ +L++ Q +++ +LG+V + + + +P+ ++
Sbjct: 422 GDSFSTKSLTKSQFRILRLLYELGIVYYKSIKGPFYVLDLSFIVGPKNLVPSNSPLSVHT 481
Query: 164 SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
S++ +S I+V++NF++Y Y+ + L +IL + +V+ + PN++VG +T+ES A
Sbjct: 482 SISFTSEYLPSKIIVQSNFKVYVYTVNNLQFDILNILCEVQARTPNMVVGVLTRESAQRA 541
Query: 224 FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPA 275
F++GIT+ +II F + + PENV Q+R+WE++ NRVE++PA
Sbjct: 542 FKSGITSHEIIRFFS-------STNTSTFPENVIRQLRMWEAERNRVELSPA 586
>gi|123488965|ref|XP_001325283.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908180|gb|EAY13060.1| hypothetical protein TVAG_212420 [Trichomonas vaginalis G3]
Length = 460
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 12/208 (5%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
L G +FLL+ Q+W IV+ Y+ +++ + + FLL++ + Y + +L+
Sbjct: 196 LCPKGHRFLLLSPKEQIWRIVKCYLKFTKDLHSS----LRFLLKIGSMELSKGYPITSLT 251
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMY 185
QK ++ F +GLV + ++F PTK N + + EG+++++TNF++
Sbjct: 252 PTQKELLSPFKTIGLVYIDG----DYFYPTKSILNFFGK--SNIFQTEGWMLIDTNFKIT 305
Query: 186 AYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 245
A+ S LH +L+ F+ V Y+ P I+ S A G T + II FL+ N ++
Sbjct: 306 AFPKSPLHTALLKKFANVTYEFPGFASAFISPNSFREALNQGTTLDDIIGFLKSNLSHKI 365
Query: 246 ADRMPSVPENVCDQIRLWESDLNRVEMT 273
+P V Q +W R+ +T
Sbjct: 366 GSG--QIPSAVMKQFYVWRDQRERLTVT 391
>gi|167535774|ref|XP_001749560.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771952|gb|EDQ85611.1| predicted protein [Monosiga brevicollis MX1]
Length = 417
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 17/230 (7%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN-SQER-----G 97
+S+M+ + Q L D+ +T GFQFLL D Q+W ++ ++ S+E G
Sbjct: 152 NSTMILILQEAQLIVNDQPPISVTPEGFQFLLQDRANQVWLLIVTFLKLLSREEPIPGEG 211
Query: 98 INQADLISFLLELSFHVAGEA----YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFI 153
+ + + L + E ++ L+ +Q + ++ +G+V + RK F
Sbjct: 212 LPMHEALVLLFRIGLGRLNEVSVLEFSAENLTTMQITFLRQLHYMGVV-YHRNRKSKRFF 270
Query: 154 PTKLATNLSMSLTDSSARKE-GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIV 212
T A L + + ++ E GF++ ETNF +YAY+ S + +L F+ + Y+LP +
Sbjct: 271 LTPYAVMLYHNAELALSQTETGFLLAETNFHVYAYTDSAVKVALLSKFATLTYRLPIMTT 330
Query: 213 GAITKESLYNAFENGITAEQIISFLQQNA-----HPRVADRMPSVPENVC 257
IT+ S+ A GITA+QI+ F+Q+++ H A P+ P++
Sbjct: 331 AIITRTSVRRALSQGITADQILRFMQRSSLLLRHHDETAPTRPTSPQHAT 380
>gi|124806778|ref|XP_001350829.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
gi|23496958|gb|AAN36509.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
Length = 945
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 89/152 (58%), Gaps = 9/152 (5%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
++V++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 766 LIVQSNFKVYLYTSSLLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 825
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR---DVFEAACD 292
FL+ +HP + S+P NV Q++LWES+ +R+ + A + F +++
Sbjct: 826 FLESYSHPGKNNFKSSIPMNVITQLKLWESERHRLTLEDAIVFKSFEKDFMPHLYQQIVI 885
Query: 293 YARDQSGLLWEDP------KKMRLVVKAEIHM 318
+A ++ LL+ P K+ L +KAE ++
Sbjct: 886 WANSKNYLLYYTPWPKNNTKEFDLWIKAEKYL 917
>gi|209880858|ref|XP_002141868.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209557474|gb|EEA07519.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 794
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 232
E I+V++NFR+Y Y+ S L +ILR +V+ + PN+I G +T+ L +A+ G+ A Q
Sbjct: 603 EAGIIVQSNFRVYCYTASPLQAKILRHLCQVKVRGPNIICGVLTRRGLLSAYSMGVKAYQ 662
Query: 233 IISFLQQNAHP-----RVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR--- 284
I+ F NAHP + D +P +V Q++LWE+D NR+E+ + ++ +
Sbjct: 663 ILRFFISNAHPIILKKHITDGTSIIPISVETQLKLWENDHNRLEINKVSLFSDWGNNKED 722
Query: 285 -DVFEAACDYARDQSGLLWED 304
++F+ YA + +L+ +
Sbjct: 723 IELFKQTVTYAIGKQVVLYHN 743
>gi|269861689|ref|XP_002650538.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220065990|gb|EED43520.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 291
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 121/257 (47%), Gaps = 41/257 (15%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T G +FLLM+ N Q+WY++ E I S L S+ L+ H + LN L
Sbjct: 72 ITTKGLEFLLMNKNEQIWYLIVEDIRLSSHL---HKKLYSYAQVLNGHKIIDKKILNFLV 128
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMY 185
EI ++I + D L K L ++ + FI +ETNF++Y
Sbjct: 129 EI--NVIDNIVDQNLYK--------------------YILYKNNTEIQKFIYLETNFKLY 166
Query: 186 AYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 245
+Y+ + IL LFS + +++P +I + ++ + N + GI +QI+ +++++
Sbjct: 167 SYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTLDRGIKIQQIVEYIRRHT---- 222
Query: 246 ADRMPSVPENVCDQ----IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
N CDQ I +W+ NR+ + Y +F + + + + + + + LL
Sbjct: 223 --------INNCDQILHMIEIWDKQRNRINKQIGYLYSDFTNYNEYRSVLEQIKTDTDLL 274
Query: 302 WEDPKKMRLVVKAEIHM 318
+++ ++ L VK ++H+
Sbjct: 275 YKNEEERILFVKNKLHI 291
>gi|399949686|gb|AFP65344.1| tfIIB-like protein [Chroomonas mesostigmatica CCMP1168]
Length = 464
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
I++E+NFR+Y Y + L ++L +FS++ YQLPNL VG IT++S+ AF +G T+ II
Sbjct: 329 IIIESNFRIYVYKNAHLGNDLLLVFSEILYQLPNLFVGEITEKSILKAFNSGSTSRNIIG 388
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPA 275
FL+ N HP P +P V +QI+ WE +++T +
Sbjct: 389 FLKNNLHPIC----PWIPSAVTNQIKAWEFQKTEIKITES 424
>gi|389586531|dbj|GAB69260.1| hypothetical protein PCYB_146880 [Plasmodium cynomolgi strain B]
Length = 913
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 69/106 (65%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 733 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 792
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 281
FL+ AHP ++ S+P NV Q++LWES+ +R+ + A + F
Sbjct: 793 FLESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 838
>gi|269860316|ref|XP_002649880.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066720|gb|EED44193.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 369
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 123/257 (47%), Gaps = 41/257 (15%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T G +FLLM+ N Q+WY++ E I S L S+ L+ H + LN L
Sbjct: 150 ITTKGLEFLLMNKNEQIWYLIVEDIRLSSHL---HKKLYSYAQVLNGHKIIDKKILNFLV 206
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMY 185
EI ++I + D L K +I K ++ + FI +ETNF++Y
Sbjct: 207 EI--NVIDNIVDQNLYK---------YILYK-----------NNTEIQKFIYLETNFKLY 244
Query: 186 AYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 245
+Y+ + IL LFS + +++P +I + ++ + N + GI +QI+ +++++
Sbjct: 245 SYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTLDRGIKIQQIVEYIRRHT---- 300
Query: 246 ADRMPSVPENVCDQ----IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLL 301
N CDQ I +W+ NR+ + Y +F + + + + + + + LL
Sbjct: 301 --------INNCDQILHMIEIWDKQRNRINKQIGYLYSDFTNYNEYRSVLEQIKTDTDLL 352
Query: 302 WEDPKKMRLVVKAEIHM 318
+++ ++ L VK ++H+
Sbjct: 353 YKNEEERILFVKNKLHI 369
>gi|60603004|gb|AAX27959.1| unknown [Schistosoma japonicum]
Length = 100
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 168 SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENG 227
SS+ G+I++ETNFR+YAY+ S L +L LFSK+ + PNL+V IT++S+ A G
Sbjct: 8 SSSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRG 67
Query: 228 ITAEQIISFLQQNAHP 243
ITA QI+SFL NAHP
Sbjct: 68 ITANQILSFLTSNAHP 83
>gi|221061889|ref|XP_002262514.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193811664|emb|CAQ42392.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 943
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 69/106 (65%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 763 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 822
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 281
FL+ AHP ++ S+P NV Q++LWES+ +R+ + A + F
Sbjct: 823 FLESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 868
>gi|302831319|ref|XP_002947225.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
gi|300267632|gb|EFJ51815.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
Length = 90
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 227 GITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 286
GI A++++S+L HP +A R P VPE V DQIRLWE+ +NR+ Y+ SR++
Sbjct: 1 GIAADELVSYLAARPHPSIASRTPVVPEVVSDQIRLWEASMNRLRADSVVLYENLASREL 60
Query: 287 FEAACDYARDQSGLLWEDPKKMRLV 311
FE A ++R LLWED +MR V
Sbjct: 61 FERALAFSRSSGTLLWEDSGQMRFV 85
>gi|156095867|ref|XP_001613968.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802842|gb|EDL44241.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 960
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 68/106 (64%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 780 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 839
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 281
FL+ AHP + S+P NV Q++LWES+ +R+ + A + F
Sbjct: 840 FLESYAHPGRSTFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 885
>gi|156086630|ref|XP_001610724.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797977|gb|EDO07156.1| conserved hypothetical protein [Babesia bovis]
Length = 586
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 97/174 (55%), Gaps = 17/174 (9%)
Query: 116 GEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE------NWFIPTKLAT-----NLSMS 164
G+ + L+ + Q+ +++ +LGLV + ++ + K A +SMS
Sbjct: 328 GDTFRLDNPTLSQQRILRFLIELGLVYADSDGSKIYVTNLSFLVDVKHANLVEEHQISMS 387
Query: 165 LTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 224
+ + K +VV++NF++YAY S L +L +++ + PNL++G +T+ SL AF
Sbjct: 388 VCGNKGSK---MVVQSNFKIYAYIPSALQMNVLNHICELQAKTPNLVIGVLTRSSLQTAF 444
Query: 225 ENGITAEQIISFLQQNAH---PRVADRMPSVPENVCDQIRLWESDLNRVEMTPA 275
++GITA+Q+I F + ++ + +VPENV Q+++WE++ NR+E+ A
Sbjct: 445 KSGITADQLICFFESKGQYDDIQINRNVMNVPENVRRQLKMWEAERNRLELLNA 498
>gi|399219100|emb|CCF75987.1| unnamed protein product [Babesia microti strain RI]
Length = 612
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 59/240 (24%)
Query: 92 NSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL----------- 140
N +E N D+I F+L LS G+ + L++ QK ++ DLG+
Sbjct: 293 NLEEAEKNVTDIIYFILTLSQLTIGQPISSKGLTKAQKRFLRFAVDLGILWQPKLDCDES 352
Query: 141 -VKLQQG-----RKENWF-----------IPTKLATNLSMSLTDSSARK----------- 172
+ L G R + +F + L+ +++ D S+RK
Sbjct: 353 SIDLDSGIHNIRRDKIYFAAPHALLFRSHMSEPLSLVSAITTADFSSRKLEIPNHYFSPY 412
Query: 173 ----------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAIT 216
E I+V++NF++Y Y+ S L +L +++ + PNL++G +T
Sbjct: 413 LLNETETAVPRMRHNLESGIIVQSNFKVYVYTASPLQINVLAHLCELQSRTPNLVIGVLT 472
Query: 217 KESLYNAFENGITAEQIISFLQQNAHP----RVADRMPSVPENVCDQIRLWESDLNRVEM 272
+ S + AF GITA+QI FL+ ++HP V + +P NV Q+ +WE++ NR+ +
Sbjct: 473 RASAHAAFRAGITAKQICQFLETHSHPILLQNVREGGSYLPNNVVTQLNMWEAERNRISL 532
>gi|429854513|gb|ELA29524.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 509
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 172 KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAE 231
+ G I+VETN+R+YAY + L +L LF K++ + +++ G +T+ S+ NA E GITA+
Sbjct: 369 RSGSIIVETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGITAD 428
Query: 232 QIISFLQQNAHPRV-----ADRMPSVPENVCDQIRLWESDL 267
QIIS+L +AH ++ P +P V DQIRL D+
Sbjct: 429 QIISYLASHAHEQMHRFAAVRNKPVLPPTVIDQIRLEYEDI 469
>gi|82704497|ref|XP_726580.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482045|gb|EAA18145.1| Drosophila melanogaster LD30622p-related [Plasmodium yoelii yoelii]
Length = 926
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 68/106 (64%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 746 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 805
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 281
FL+ +HP +P NV Q++LWE++ +R+ + + + F
Sbjct: 806 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 851
>gi|70950974|ref|XP_744765.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524852|emb|CAH80923.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 922
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 68/106 (64%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 742 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 801
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 281
FL+ +HP +P NV Q++LWE++ +R+ + + + F
Sbjct: 802 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 847
>gi|68070707|ref|XP_677265.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497310|emb|CAH94094.1| conserved hypothetical protein [Plasmodium berghei]
Length = 929
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 64/95 (67%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 749 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 808
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRV 270
FL+ +HP +P NV Q++LWE++ +R+
Sbjct: 809 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRL 843
>gi|340508252|gb|EGR33999.1| hypothetical protein IMG5_027880 [Ichthyophthirius multifiliis]
Length = 454
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 65/259 (25%)
Query: 72 QFLLMDTNAQLWYIVREYISN-SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKS 130
+F+L DTNAQ+ I+ Y +Q I + D+I+F++ LS + Y N SE K
Sbjct: 189 EFILQDTNAQIHQILFYYCQVFAQMENIEEEDIINFIITLSNLDVNKTYFFNYRSEYAKK 248
Query: 131 ------------MIKDFADLGLVK-LQQGRKENWFIPTKLATNL---SMSLTDSSARKEG 174
++ D A LG++K G+++ F T L S+ + +A+
Sbjct: 249 QNIDQKFTFELKILSDLAKLGMIKEFDLGQQKKVFGITPLIWQFCYRSIDIKTINAK--- 305
Query: 175 FIVVETNFRMYAY----------STSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 224
I+VETNF +YAY S SK ++L+ FSK+ Y P+LIV +T+ + AF
Sbjct: 306 -IIVETNFNLYAYLDYNPQNKTFSESKYIRDLLKKFSKIHYTFPHLIVAQLTEAKMKQAF 364
Query: 225 ENGITAEQIISFLQQNAHPRVADRMPS--------------------------------- 251
GIT++ +I F + + ++ +
Sbjct: 365 NQGITSKLLIEFFHKTSDAKLKKYLKDKQMSAIKLTQSLNLNKKKLDFLQLFQKKEEDFS 424
Query: 252 -VPENVCDQIRLWESDLNR 269
VP+N+ +I+ WE + ++
Sbjct: 425 LVPDNIIQEIQTWEKEKDK 443
>gi|194390490|dbj|BAG62007.1| unnamed protein product [Homo sapiens]
Length = 220
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 125 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 184
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLV 141
SF G+ Y++ +S+ + ++ + GLV
Sbjct: 185 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV 215
>gi|380476902|emb|CCF44454.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 126
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 9/126 (7%)
Query: 210 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRM------PSVPENVCDQIRLW 263
++ G +T+ S+ NA E GITA+QIIS+L +AH ++ RM P +P V DQIRLW
Sbjct: 1 MVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQM-HRMAAVRSRPVLPPTVVDQIRLW 59
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREF 323
+ + R+ T + +F S +E YA + L+W + K A H +R++
Sbjct: 60 QLETERMTTTSGFLFRDFDSPKEYEVIAGYASEIGVLVWRNDKLGMFF--ASKHEQIRDY 117
Query: 324 LRGQNK 329
L+ + K
Sbjct: 118 LKLRKK 123
>gi|160331881|ref|XP_001712647.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
gi|159766096|gb|ABW98322.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
Length = 432
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 4/97 (4%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 235
I++E+N+R+Y Y + + ++ +FS++ Y LPN VG IT+ S+ A ++GIT + I+
Sbjct: 300 IIIESNYRIYVYQKNSNNNQLFLIFSEILYILPNFFVGEITETSISRALKSGITIQNILG 359
Query: 236 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEM 272
F+++N H S+P + +Q RLWE ++++
Sbjct: 360 FIRENLHCVCR----SIPSTILNQFRLWEFQKKKIKI 392
>gi|443919931|gb|ELU39967.1| Tfb2 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 302
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T +GFQFLL AQLW I+ +Y+ S R ++ A+++SFL LS G+ Y+ + LS
Sbjct: 191 ITSTGFQFLLQSPRAQLWDILLQYLHMSDARRMDIAEVLSFLFMLSLMKLGQEYSCDNLS 250
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL 165
Q +M+ D D G+ F PT+LAT L+ SL
Sbjct: 251 PTQNAMMTDLKDYGI------NANKSFYPTRLATTLTSSL 284
>gi|324515605|gb|ADY46257.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 28/180 (15%)
Query: 54 GLLSRRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSF 112
GL S + E +T +GFQFLL++ Q+W + Y+ + G N + FLL+L+
Sbjct: 65 GLTSGGESEGDMEITSAGFQFLLLNQTEQIWMYILHYLRLEESMGKNVMAELDFLLKLTL 124
Query: 113 -----HVAGE---------------AYNLN-TLSEIQKSMIKDFADLGLVKLQQGRKENW 151
H G A+ ++ + SE + + +LGLV +++ RK+ +
Sbjct: 125 CVDHTHTNGRLRVVDGDREKKATWRAFFIDESWSETITNFLMQLRELGLVFIRK-RKDGY 183
Query: 152 FIPTKLATNLSMSLTDSSARKE-----GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQ 206
F T L +L++S + +A E G+I+VETN+R+YAY+ S L IL F+++ Y+
Sbjct: 184 FFITPLFAHLTVSSSSETAVAEKRTHSGYIIVETNYRVYAYTDSSLQLAILSTFTEMLYR 243
>gi|90076516|dbj|BAE87938.1| unnamed protein product [Macaca fascicularis]
Length = 358
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 217 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 276
Query: 111 SFHVAGEAYNLNTLSE 126
SF G+ Y++ +S+
Sbjct: 277 SFSTLGKDYSVEGMSD 292
>gi|355693901|gb|AER99490.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 265
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSE 126
SF G+ Y++ +S+
Sbjct: 242 SFSTLGKDYSVEGMSD 257
>gi|238570605|ref|XP_002386883.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
gi|215440101|gb|EEB87813.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
Length = 69
Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 169 SARKEGFIVVETNFRMYAYSTS-----KLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
S ++GFIV+ETN+R+YAY+ S L IL LF ++Y+ PNL+VG+IT+ES+ A
Sbjct: 1 SGSQQGFIVLETNYRVYAYTGSFSLHNPLQTAILHLFVSLKYRFPNLVVGSITRESVKKA 60
Query: 224 FENGITAEQ 232
NGI+A+Q
Sbjct: 61 LSNGISADQ 69
>gi|145509120|ref|XP_001440504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407721|emb|CAK73107.1| unnamed protein product [Paramecium tetraurelia]
Length = 400
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 45/230 (19%)
Query: 70 GFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQK 129
GF F+L T+ Q+ I++ Y++ ++++ F+L LS + Y + E QK
Sbjct: 177 GFSFILSSTHKQINQILKYYVTKQS------SNVVRFILCLSVLDPMKIYQMPN-EEWQK 229
Query: 130 SMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYST 189
++IKD + GL Q + F L N S + I+VE NFR+YAY
Sbjct: 230 NVIKDLQEFGLTHYQDQQMRITF----LFWNFLYEPPSVSIGIQCNIIVEANFRIYAYLN 285
Query: 190 S------KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA-- 241
S ++ C +L LFS+++ + LI+ +++ S+ A + A+QII FL+ N+
Sbjct: 286 SGDQQEEEILCNLLNLFSEIKKRFKILIIADLSESSIRKAVRENLQAKQIIQFLEMNSKQ 345
Query: 242 ---------HPRVADRMPS-----------------VPENVCDQIRLWES 265
+ D + +P NV QI+ WES
Sbjct: 346 LKQQAATEKQHKSNDELKKRLDFLRVFQEGVPEKAIIPHNVVQQIQYWES 395
>gi|330038479|ref|XP_003239608.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
gi|327206532|gb|AEA38710.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
Length = 467
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 13/105 (12%)
Query: 165 LTDSSARKEGF-IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNA 223
L+ KE F +++E+N+R+YAY+ + +IL F + Y LP L VG I K S++ A
Sbjct: 307 LSKKIKTKECFQMIIESNYRVYAYNNNTFLNKILIQFCDLIYNLPGLFVGEINKTSIHKA 366
Query: 224 FENGITAEQIISFLQQNAHPRVADRMPSVPENVC----DQIRLWE 264
GI A+ IISF+ +N+H + +N C +QIR+WE
Sbjct: 367 IHKGINAKNIISFILKNSH--------YIHQNSCNPIINQIRIWE 403
>gi|380492949|emb|CCF34234.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 343
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GINQ 100
SS+ + G L RR A +T++GF FLL + NAQ+W ++ ++ + G+
Sbjct: 173 SSVKNLLVAGQLVRRQGSAVGITQAGFTFLLQEANAQVWTLLLLWLEATDHAEDAAGMES 232
Query: 101 ADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATN 160
D++SFL L+ G AY+ N L+E +++M+ D GL+ + + + +F PT+LAT
Sbjct: 233 TDMLSFLFLLASLELGRAYDTNALTEARRNMLPSLLDFGLIYIPSHKPQQYF-PTRLATT 291
Query: 161 LSMS 164
L+ S
Sbjct: 292 LTSS 295
>gi|294950275|ref|XP_002786548.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
gi|239900840|gb|EER18344.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
Length = 580
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 36/153 (23%)
Query: 159 TNLSMSLTDSSA--RKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL-------PN 209
+ + MS+ D++A K + V++NF + AY+TS L +L F +++ QL PN
Sbjct: 376 SKMMMSVDDTTAITNKSCRLFVDSNFAVTAYTTSSLDLRLLGTFVQLQRQLGDGREYDPN 435
Query: 210 ---LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR------------------ 248
++G +T+ S+ +A + G+T+E IIS+L+ + PR A
Sbjct: 436 DFGCVLGTLTQSSVQSAAQRGVTSEYIISYLKSHVDPRAAHMGSQGGRSSAATANTGAAR 495
Query: 249 ----MPSVPENVCDQIRLWESDL--NRVEMTPA 275
+ +P NV QI LWE + NR+ + P
Sbjct: 496 GEKFIDGIPANVVTQITLWEREAIHNRLRIDPG 528
>gi|342184190|emb|CCC93671.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 499
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 54/263 (20%)
Query: 62 EAPRLTESGFQFLLMDTNAQLWYIVR----EYISNSQERGINQADLISFLLEL-SFHVAG 116
EA R+T G F + Q W +V ++ + +G+ +A L L L + +
Sbjct: 178 EAARITCEGLSFCMQSLQQQWWTLVSVALDRVLTLTSGKGVTRATLWQLLAVLFALDASD 237
Query: 117 EAYNLNTLSEIQKS--MIKDFADLGLVK--LQQGRKENWFIP--------TKLATNLSMS 164
Y + E ++ ++ +++GLV L GRK P + + + + +
Sbjct: 238 YVYPFPSKEEDLEAFHLLARLSEVGLVYPLLCNGRKCFVLSPHFHHAICWSSVPSLCAAA 297
Query: 165 LTDSSARK--------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG-AI 215
L D+ + E I+ ETNFR+YAY+ + IL F+ E + +IV +
Sbjct: 298 LLDNPNQTPCPLRREDEDTIITETNFRLYAYTRNPDLLGILDQFAVKEIDIDGIIVCYRV 357
Query: 216 TKESLYNAFENGITAEQIISFLQQNAHPR-----------VADRM----------PS--- 251
T+ S A GI A+ I+ FL AHP V+D + PS
Sbjct: 358 TRSSFALALRKGIDAKHILQFLTLKAHPSMVRKDGGASRDVSDNLALNSVAGFGKPSEVH 417
Query: 252 ----VPENVCDQIRLWESDLNRV 270
+P++ CDQ+ WE + R+
Sbjct: 418 QSTVIPQSFCDQLMTWERECRRL 440
>gi|258577869|ref|XP_002543116.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903382|gb|EEP77783.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 311
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 55 LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHV 114
L+ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G++ +++SFL LS
Sbjct: 181 LVEVRDRRV-EITKEGFAFVLQDVNTQVWHILVLYVENAEAIGMDSVEVLSFLFLLSSLE 239
Query: 115 AGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKE-NWFIPTKLATNLS 162
G++Y LS Q + D D G+V E F PT+LAT L+
Sbjct: 240 LGQSYEKQHLSSTQLRTLADLTDFGIVYQHSPASEATRFYPTRLATTLT 288
>gi|85857462|gb|ABC86267.1| RE43632p [Drosophila melanogaster]
Length = 280
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI 90
NG+ +A P ++ + L+ R +++ +T GFQFLL+DT AQ+W+ + +Y+
Sbjct: 192 NGTDAEAISP----DAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYL 247
Query: 91 SNSQERGINQADLISFLLELSF 112
+ERGI+ + +S L +LSF
Sbjct: 248 DTCEERGISLPECLSMLFQLSF 269
>gi|146161819|ref|XP_001033510.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila]
gi|146142827|gb|EAR85847.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila
SB210]
Length = 484
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 127/306 (41%), Gaps = 81/306 (26%)
Query: 31 NGSSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQ----FLLMDTNAQLWYIV 86
N +S+Q++ + +S +M VF R +LS P SG+Q F+L DTN Q+ I+
Sbjct: 173 NNTSSQSQ--SKYSRLVMDVF-RQILSVE----PGNLGSGYQKYMEFILEDTNTQIDKIL 225
Query: 87 REYISN-SQERGINQADLISFLLELS----FHVAGEAYNLNTLSEIQKSM--IKDFADLG 139
Y S+ I+ +SFLL LS + YN T + + + + D LG
Sbjct: 226 TLYCYQYSRNHKISVETAVSFLLTLSNLDITKIYQNTYNNETATFQPRELEFLNDLHSLG 285
Query: 140 LVKLQQGRKENWFIPTKLATNLSMSLTDSSARK------EGFIVVETNFRMYAY------ 187
+V +KE + ++A ++ L RK I +ETNF +YAY
Sbjct: 286 MV----FKKE--ILKDRIAFYITPVLWQFCYRKIDLKTLNAKITIETNFNVYAYIDQEDP 339
Query: 188 -----STSKL-----HCE-ILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 236
S L H E +L F + Y+ P+LIVG ++++ + F+NG+TA +I F
Sbjct: 340 KEIKDSKDTLKDQTEHIEKLLASFCDLHYKFPHLIVGQLSEQKTKDQFKNGLTARLLIQF 399
Query: 237 LQQNAHP----------------------------------RVADRMPSVPENVCDQIRL 262
+ + P + D +P+N+ +I
Sbjct: 400 FNKTSDPQMKKYLKDKQMNAILLTQVQNLQKKKLEFLNLFKKTEDNFSLIPDNIQQEIET 459
Query: 263 WESDLN 268
WE + N
Sbjct: 460 WEREKN 465
>gi|47212202|emb|CAF90416.1| unnamed protein product [Tetraodon nigroviridis]
Length = 471
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 205 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWE 264
Y+ PN++V +T+ES+ A NGITA+Q ++F + P + P +P + DQIRLWE
Sbjct: 282 YRFPNVVVAQVTRESVQQAIANGITAQQRLTF-DLWSSPTPLSQTPVLPPTITDQIRLWE 340
Query: 265 SDLNRVEMTPA 275
+ +R++ T A
Sbjct: 341 LERDRLQFTEA 351
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGIN--QADLISFLLEL 110
GL+ E P +T +GFQFLL+DT +QLWY +Y+ +Q+ + L++FL L
Sbjct: 206 GLMKSEAGEPPYITSAGFQFLLLDTASQLWYFTLQYLKTAQDYSVEGMSDSLLTFLQHL 264
>gi|300122496|emb|CBK23066.2| unnamed protein product [Blastocystis hominis]
Length = 339
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 34 STQAERPTNFSSSMMKVFQRGLLSRRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYISN 92
S A+ P+ S + F R L R D A +T +G+QFL+ Q W+++ +I++
Sbjct: 152 SPHAQPPS--VSEVRDCFLRCKLLRADSAAKFAITATGYQFLMKSYRDQAWWLLHPHITS 209
Query: 93 SQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
+ N +SFL L + AY++ LSE Q+ +++ G+V + F
Sbjct: 210 A-----NALPALSFLFSLRHMIPCRAYDVAALSEPQRQLLEIARIAGVVYTPTTAGKRVF 264
Query: 153 IPTKLATNLSMSLTDS---SARK---EGF--------IVVETNFRMYAY---STSKLHCE 195
T L L S RK EGF +V+E NF +YA+ + ++LH +
Sbjct: 265 FATPLGAALFTQEGASRGEGGRKSGGEGFMKAEGSMRVVIEANFHVYAFGLLAENRLHVQ 324
Query: 196 ILRLF 200
+LR F
Sbjct: 325 LLRQF 329
>gi|162605818|ref|XP_001713424.1| hypothetical protein GTHECHR3089 [Guillardia theta]
gi|13794356|gb|AAK39733.1|AF083031_90 hypothetical protein [Guillardia theta]
Length = 180
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 135 FADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGF-IVVETNFRMYAYSTSKLH 193
F ++GL+ L G+K I K+ + + E F I++E NFR+Y +
Sbjct: 5 FYNMGLINLT-GKKTIQ-ISNKIINLEKNGIIIQKKKTERFKIIIEVNFRIYIFKYFDFS 62
Query: 194 CEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVP 253
+ SK Y LP VG I + F+ G+T++ I+ F+++N H +++PS
Sbjct: 63 NSFFKFISKKIYSLPYFYVGEINENYSRRLFQLGVTSDNILKFIKKNLH-YTCNKIPSTF 121
Query: 254 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
E D++R+WE + +++ F R+
Sbjct: 122 E---DRLRIWE-----ISFKKKYFFGGFLMRN 145
>gi|401419872|ref|XP_003874425.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490661|emb|CBZ25923.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 559
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 49/144 (34%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQL-PNLIVGAITKESLYNAFENGITAEQII 234
I+ ETNFR+YAY+ IL F+++E + NL +T++S A GITA Q++
Sbjct: 359 IITETNFRLYAYTDDADLLNILNQFAELEEIVNGNLHCYRVTRDSFAAAMRKGITAAQVL 418
Query: 235 SFLQQNAHPRVADR-----------MPS-------------------------------- 251
FL AHP + R PS
Sbjct: 419 RFLSLRAHPSMLRRHGEREESGDTAAPSSAGGVSSSLTFSAPHRRGAVPGTCGGTTAIDA 478
Query: 252 -----VPENVCDQIRLWESDLNRV 270
VP++ CDQ+R+WES+ +RV
Sbjct: 479 VSTIVVPQSFCDQMRMWESECHRV 502
>gi|146103275|ref|XP_001469523.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073893|emb|CAM72632.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 557
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 49/144 (34%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQL-PNLIVGAITKESLYNAFENGITAEQII 234
I+ ETNFR+YAY+ IL F+K+E + NL +T++S +A GITA Q++
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 235 SFLQQNAHPRVADRMPS------------------------------------------- 251
FL AHP + R
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 252 -----VPENVCDQIRLWESDLNRV 270
VP++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|398024082|ref|XP_003865202.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503439|emb|CBZ38524.1| hypothetical protein, conserved [Leishmania donovani]
Length = 557
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 49/144 (34%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQL-PNLIVGAITKESLYNAFENGITAEQII 234
I+ ETNFR+YAY+ IL F+K+E + NL +T++S +A GITA Q++
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 235 SFLQQNAHPRVADRMPS------------------------------------------- 251
FL AHP + R
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 252 -----VPENVCDQIRLWESDLNRV 270
VP++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|154345556|ref|XP_001568715.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066057|emb|CAM43844.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 561
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 48/143 (33%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQL-PNLIVGAITKESLYNAFENGITAEQII 234
I+ ETNFR+YAY+ IL F+++E + NL +T++S A GITA Q++
Sbjct: 362 IITETNFRLYAYTEDSDLLNILHQFAELEEVVNGNLHCYRVTRDSFAAAMRKGITATQVL 421
Query: 235 SFLQQNAHPRVADR------------------MPS------------------------- 251
FL AHP + R PS
Sbjct: 422 RFLSLRAHPSMLRRYGEKEENGDTKSPSPAGGAPSSTFSAPPRRAAVAGTRGSTTFIDAV 481
Query: 252 ----VPENVCDQIRLWESDLNRV 270
VP + CDQ+R+WE + RV
Sbjct: 482 TTLVVPHSFCDQLRMWERECRRV 504
>gi|340057132|emb|CCC51474.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 502
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 34/130 (26%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG-AITKESLYNAFENGITAE 231
E I+ ETNFR+YAY+ +K IL F+ E ++ +IV +T+ S A GI A+
Sbjct: 315 EDTIITETNFRLYAYTRNKHLLAILEQFAIKEAEVDGMIVCFRVTRASFAAALRKGIGAQ 374
Query: 232 QIISFLQQNAH-----------PR--------------------VADRMPSVPENVCDQI 260
I+ FL+ AH PR AD++ +P + CDQ+
Sbjct: 375 HIVQFLRVKAHSSMLKHQLTCDPRDSAGLAATSSRVTPTDTPWTHADKI--IPRSFCDQL 432
Query: 261 RLWESDLNRV 270
WE + R+
Sbjct: 433 FTWERECRRL 442
>gi|261332554|emb|CBH15549.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 500
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 101/261 (38%), Gaps = 58/261 (22%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNS----QERGINQADL-----ISFLLELSFHVAG 116
+T G F + Q W +V + + +G+++A L + F L S +V
Sbjct: 183 VTSEGLAFCMQPLQQQWWTLVSVVLDRALAIMSGKGVSRATLWQLLAVLFALNTSDYVYL 242
Query: 117 EAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFI--------------PTKLATNLS 162
+ L Q ++ +++GLV E F+ P+ L
Sbjct: 243 FPSKDDDLEAFQ--LLARLSEVGLVYPLICNGEKCFVLSPHFHHAICWSSTPSLCTAALL 300
Query: 163 MSLTDSSAR----KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG-AITK 217
S+R E I+ ETNFR+YAY+ + IL F+ E + ++V +T+
Sbjct: 301 DDTRGPSSRLRREDEDTIITETNFRLYAYTKNPDMLRILDQFAVKEVDVVGMVVCYRVTR 360
Query: 218 ESLYNAFENGITAEQIISFLQQNAHPRVADR------------MPS-------------- 251
S +A GI A I+ FL AHP + + +P+
Sbjct: 361 ASFASALAKGIGANHILQFLTVKAHPSMIKQSNSEAGDPSCPVLPAASAGFGNTSEYRQG 420
Query: 252 --VPENVCDQIRLWESDLNRV 270
+P++ CDQ+ WE + R+
Sbjct: 421 NIIPQSFCDQLFTWERECRRL 441
>gi|71747422|ref|XP_822766.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832434|gb|EAN77938.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 500
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 101/261 (38%), Gaps = 58/261 (22%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNS----QERGINQADL-----ISFLLELSFHVAG 116
+T G F + Q W +V + + +G+++A L + F L S +V
Sbjct: 183 VTSEGLAFCMQPLQQQWWTLVSVVLDRALAIMSGKGVSRATLWQLLAVLFALNTSDYVYL 242
Query: 117 EAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFI--------------PTKLATNLS 162
+ L Q ++ +++GLV E F+ P+ L
Sbjct: 243 FPSKDDDLEAFQ--LLARLSEVGLVYPLICNGEKCFVLSPHFHHAICWSSTPSLCTAALL 300
Query: 163 MSLTDSSAR----KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG-AITK 217
S+R E I+ ETNFR+YAY+ + IL F+ E + ++V +T+
Sbjct: 301 DDTRGPSSRLRREDEDTIITETNFRLYAYTKNPDMLRILDQFAVKEVDVVGMVVCYRVTR 360
Query: 218 ESLYNAFENGITAEQIISFLQQNAHPRVADR------------MPS-------------- 251
S +A GI A I+ FL AHP + + +P+
Sbjct: 361 ASFASALAKGIGANHILQFLTVKAHPSMIKQSNSEAGDPSCPVLPAASVGFGNTSEYRQG 420
Query: 252 --VPENVCDQIRLWESDLNRV 270
+P++ CDQ+ WE + R+
Sbjct: 421 NIIPQSFCDQLFTWERECRRL 441
>gi|157876614|ref|XP_001686652.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129727|emb|CAJ09033.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 49/144 (34%)
Query: 176 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQL-PNLIVGAITKESLYNAFENGITAEQII 234
I+ ETNFR++AY+ IL F+++E + NL +T+ S A GITA Q++
Sbjct: 426 IITETNFRLFAYTNDADLLNILNQFAELEEIVNGNLHCYRVTRASFAAAMRKGITAAQVL 485
Query: 235 SFLQQNAHPRVADRMPS------------------------------------------- 251
FL AHP + R
Sbjct: 486 RFLSLRAHPSMLRRHGEREENGDTASPSSAGGASSSFTFSASPRRGAVAGTCGSTTSIDA 545
Query: 252 -----VPENVCDQIRLWESDLNRV 270
VP++ CDQ+R+WES+ RV
Sbjct: 546 VSTLVVPQSFCDQMRMWESECRRV 569
>gi|71425201|ref|XP_813043.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70877891|gb|EAN91192.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 111/283 (39%), Gaps = 62/283 (21%)
Query: 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN----SQERGINQ 100
+SM++ ++ L E +T G F + Q W +V + ++ G+ +
Sbjct: 165 ASMLQYYR---LVPTSSETREITSEGLSFCMQPLQQQWWTLVSVALDRILVLTKNSGVTR 221
Query: 101 ADL-----ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVK--LQQGRKENWFI 153
A+L + F L+ S V L+ Q ++ +++GLV + GR+
Sbjct: 222 AELWQLLAVLFALDTSQFVYPFPEKEKDLAAFQ--ILARLSEVGLVYPLISGGRRCFALS 279
Query: 154 P--------TKLATNLSMSLTDSSARKEG--------FIVVETNFRMYAYSTSKLHCEIL 197
P + A + +L DS G I+ E NFR+YAY+ + IL
Sbjct: 280 PHFHHAVCWSSTAPLCTAALLDSGGNSMGRVRREDEDTIITEANFRLYAYTRNPDLLNIL 339
Query: 198 RLFSKVEYQLPNLIVG-AITKESLYNAFENGITAEQIISFLQQNAHP------RVADRMP 250
F++ + ++ +I +T+ + A + GI + I+ FL AHP R D
Sbjct: 340 NQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSSHILQFLAVKAHPSMLRHHREGDSKK 399
Query: 251 S-----------------------VPENVCDQIRLWESDLNRV 270
+ +P++ CDQ+ WE + R+
Sbjct: 400 ASGLSVLGAGTRFKNASDIRIDEIIPQSFCDQLMTWEKECRRL 442
>gi|71650598|ref|XP_813994.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70878928|gb|EAN92143.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 62/283 (21%)
Query: 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN----SQERGINQ 100
+SM++ ++ L E +T G F + Q W +V + ++ G+ +
Sbjct: 165 ASMLQYYR---LVPTSSETREITSEGLSFCMQPLQQQWWTLVSVALDRILVLTKNSGVTR 221
Query: 101 ADL-----ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVK--LQQGRKENWFI 153
A+L + F L S V L+ Q ++ +++GLV + GR+
Sbjct: 222 AELWQLLAVLFALNTSQFVYPFPEKEKDLAAFQ--ILARLSEVGLVYPLISGGRRCFALS 279
Query: 154 P--------TKLATNLSMSLTDSSARKEG--------FIVVETNFRMYAYSTSKLHCEIL 197
P + A + +L DS G I+ E NFR+YAY+ + IL
Sbjct: 280 PHFHHAVCWSSTAPLCTAALLDSGGNSMGRVRREDEDTIITEANFRLYAYTKNPDLLNIL 339
Query: 198 RLFSKVEYQLPNLIVG-AITKESLYNAFENGITAEQIISFLQQNAHP------RVADRMP 250
F++ + ++ +I +T+ + A + GI + I+ FL AHP R D
Sbjct: 340 NQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSSHILQFLAVKAHPSMLMHHREGDSKK 399
Query: 251 S-----------------------VPENVCDQIRLWESDLNRV 270
+ +P++ CDQ+ WE + R+
Sbjct: 400 ASGLSVLGAGTRFKNASDIRIDEIIPQSFCDQLMTWEKECRRL 442
>gi|407835017|gb|EKF99108.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 111/283 (39%), Gaps = 62/283 (21%)
Query: 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISN----SQERGINQ 100
+SM++ ++ L E +T G F + Q W +V + ++ G+ +
Sbjct: 165 ASMLQYYR---LVPTSSETREITSEGLSFCMQPLQQQWWTLVSVALDRILVLTKNSGVTR 221
Query: 101 ADL-----ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVK--LQQGRKENWFI 153
A+L + F L+ S V L+ Q ++ +++GLV + GR+
Sbjct: 222 AELWQLLAVLFALDTSQFVYPFPEKEKDLAAFQ--ILARLSEVGLVYPLISGGRRCFALS 279
Query: 154 P--------TKLATNLSMSLTDSSARKEG--------FIVVETNFRMYAYSTSKLHCEIL 197
P + A + +L DS G I+ E NFR+YAY+ + IL
Sbjct: 280 PHFHHAVCWSSTAPLCTAALLDSGGDSMGRVRREDEDTIITEANFRLYAYTRNPDLLNIL 339
Query: 198 RLFSKVEYQLPNLIVG-AITKESLYNAFENGITAEQIISFLQQNAHP------RVADRMP 250
F++ + ++ +I +T+ + A + GI + I+ FL AHP R D
Sbjct: 340 NQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSLHILQFLAVKAHPSMLRHHREGDSKK 399
Query: 251 S-----------------------VPENVCDQIRLWESDLNRV 270
+ +P++ CDQ+ WE + R+
Sbjct: 400 ASGLSVLGAGTRFKKASDIRIDEIIPQSFCDQLMTWEKECRRL 442
>gi|407397449|gb|EKF27748.1| DNA repair and transcription factor protein [Trypanosoma cruzi
marinkellei]
Length = 501
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG-AITKESLYNAFENGITAE 231
E I+ E NFR+YAY+ + IL F++ + ++ +I +T+++ A + GI +
Sbjct: 315 EDTIITEANFRLYAYTKNPDLLNILNQFAERDAEIDQMIACYRVTRKTFAAALKRGIGSS 374
Query: 232 QIISFLQQNAHP------RVADRMPS-----------------------VPENVCDQIRL 262
I+ FL AHP R D + +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLRNHRDGDSKKTSGLSVLGAGTRFKNTSDIRIDGIIPQSFCDQLMT 434
Query: 263 WESDLNRV 270
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|337743331|gb|AEI73162.1| GTF2H4 [Kryptolebias marmoratus]
Length = 82
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 119 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT-----------D 167
Y++ +SE + ++ + GLV Q+ RK + PT+LA L+ +T
Sbjct: 3 YSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTSNSSSSSNLSST 61
Query: 168 SSARKEGFIVVETNFRMYAYS 188
A GFIVVETN+R+YAY+
Sbjct: 62 QGAGDAGFIVVETNYRVYAYT 82
>gi|414589532|tpg|DAA40103.1| TPA: hypothetical protein ZEAMMB73_417245 [Zea mays]
Length = 877
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 9/48 (18%)
Query: 264 ESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLV 311
++DLNRVEM P++ Y++FPS+ ARD LL +D K+MRL+
Sbjct: 824 QTDLNRVEMIPSYLYEDFPSK---------ARDNGYLLCDDSKRMRLI 862
>gi|158302621|ref|XP_561433.2| Anopheles gambiae str. PEST AGAP012880-PA [Anopheles gambiae str.
PEST]
gi|157021114|gb|EAL42401.2| AGAP012880-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 21 WRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDKE--APRLTESGFQFLLMDT 78
WR + + GSS E S +++ L +RD+ +P +T GFQFLL+DT
Sbjct: 173 WRCVLHYMVGAGSSKGMEG-EGISPDAVRILLHANLMKRDESDGSPVITRQGFQFLLLDT 231
Query: 79 NAQLWYIVREYI 90
AQ+W+ + +Y+
Sbjct: 232 QAQVWHFMLQYL 243
>gi|241725008|ref|XP_002412209.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
gi|215505416|gb|EEC14910.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
Length = 75
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 258 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIH 317
DQ+RLWE + +R Y +F S+ F+ +YA D L+W++P K +VV H
Sbjct: 2 DQLRLWELERDRFNFREGVLYSQFISQSDFQLLRNYASDLGVLIWDNPSKRVMVVNRNGH 61
Query: 318 MHMREFLR 325
++ F +
Sbjct: 62 DEVKRFWK 69
>gi|241654873|ref|XP_002411342.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
gi|215503972|gb|EEC13466.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
Length = 218
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 50 VFQRGLLSRRDKE--APRLTESGFQFLLMDTNAQLWYIVREYI 90
+ GL+ ++E AP +T GFQFLLMDT +Q+W+ V +Y+
Sbjct: 175 LLHAGLMKSEEEEGSAPLITMEGFQFLLMDTASQVWHFVLQYL 217
>gi|197107449|pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
gi|197107451|pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 108
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 243 PRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW 302
P + + +P V DQIRLW+ +L+RV Y +F + + YA+D LLW
Sbjct: 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLW 78
Query: 303 EDPKKMRLVVKAEIHMHMREFLR 325
+D KK + + E + + +F +
Sbjct: 79 KDDKKKKFFISKEGNSQVLDFAK 101
>gi|47194594|emb|CAF93785.1| unnamed protein product [Tetraodon nigroviridis]
Length = 123
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 23/109 (21%)
Query: 243 PRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA----------ACD 292
P + P +P + DQIRLWE + +R++ T Y++F S+ FE C
Sbjct: 15 PTPLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQTDFEVLRDRAQVGLFHCC 74
Query: 293 YARDQ-------------SGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
Y Q LLW+D +VV H +++F + Q
Sbjct: 75 YTIRQKVHQQLSPVLQSLGCLLWQDAAHRVMVVTLWGHSEVKKFWKRQK 123
>gi|359075905|ref|XP_002695282.2| PREDICTED: sialic acid binding Ig-like lectin 5-like [Bos taurus]
Length = 520
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 142 KLQQGRKENWFIPTKL-ATNLSMSLTDSSARKEG--FIVVETNFRMYAYSTSKLHCEILR 198
KL++G + + +P + A N S+S+TD +A G F VET+FR YAY L ++
Sbjct: 76 KLREGTQGRFSVPGEPQAGNCSLSITDVNAGDSGTYFFQVETHFRKYAYLNKMLFLNVIA 135
Query: 199 LFSKVEYQLPNLI 211
L + + P +
Sbjct: 136 LTHQPHVRSPGAL 148
>gi|296477381|tpg|DAA19496.1| TPA: sialic acid binding Ig-like lectin 5-like [Bos taurus]
Length = 546
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 142 KLQQGRKENWFIPTKL-ATNLSMSLTDSSARKEG--FIVVETNFRMYAYSTSKLHCEILR 198
KL++G + + +P + A N S+S+TD +A G F VET+FR YAY L ++
Sbjct: 82 KLREGTQGRFSVPGEPQAGNCSLSITDVNAGDSGTYFFQVETHFRKYAYLNKMLFLNVIA 141
Query: 199 LFSKVEYQLPNLI 211
L + + P +
Sbjct: 142 LTHQPHVRSPGAL 154
>gi|358416930|ref|XP_875692.5| PREDICTED: LOW QUALITY PROTEIN: sialic acid binding Ig-like lectin
5-like [Bos taurus]
Length = 479
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 142 KLQQGRKENWFIPTKL-ATNLSMSLTDSSARKEG--FIVVETNFRMYAYSTSKLHCEILR 198
KL++G + + +P + A N S+S+TD +A G F VET+FR YAY L ++
Sbjct: 76 KLREGTQGRFSVPGEPQAGNCSLSITDVNAGDSGTYFFQVETHFRKYAYLNKMLFLNVIA 135
Query: 199 LFSKVEYQLPNLI 211
L + + P +
Sbjct: 136 LTHQPHVRSPGAL 148
>gi|207340600|gb|EDZ68899.1| YPL122Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 226
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFL 107
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+
Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFI 225
>gi|197107383|pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 80
Score = 38.1 bits (87), Expect = 5.9, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
V DQIRLW+ +L+RV Y +F + + YA+D LLW+D KK + + E
Sbjct: 4 VVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKE 63
Query: 316 IHMHMREFLRGQNK 329
+ + +F + + K
Sbjct: 64 GNSQVLDFAKRKLK 77
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,812,583,134
Number of Sequences: 23463169
Number of extensions: 186936178
Number of successful extensions: 421657
Number of sequences better than 100.0: 409
Number of HSP's better than 100.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 420479
Number of HSP's gapped (non-prelim): 522
length of query: 329
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 187
effective length of database: 9,027,425,369
effective search space: 1688128544003
effective search space used: 1688128544003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)