BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020247
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 108
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 243 PRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW 302
P + + +P V DQIRLW+ +L+RV Y +F + + YA+D LLW
Sbjct: 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLW 78
Query: 303 EDPKKMRLVVKAEIHMHMREFLR 325
+D KK + + E + + +F +
Sbjct: 79 KDDKKKKFFISKEGNSQVLDFAK 101
>pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 80
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
V DQIRLW+ +L+RV Y +F + + YA+D LLW+D KK + + E
Sbjct: 4 VVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKE 63
Query: 316 IHMHMREFLRGQNK 329
+ + +F + + K
Sbjct: 64 GNSQVLDFAKRKLK 77
>pdb|3CDK|B Chain B, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
pdb|3CDK|D Chain D, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
Length = 219
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 97 GINQADLISFLLELSFHVAGEAY--NLNTLSEIQKSMIKDFADLGLVKL-QQGRKENWFI 153
G ADLI+ E V G +Y + + + I+ I D A LG +++ +QG NW I
Sbjct: 63 GTEDADLINAGKETITEVTGASYFDSAESFAMIRGGHI-DLAILGGMEVSEQGDLANWMI 121
Query: 154 PTKLATNL--SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 207
P K+ + +M L + + R +V+ + + S K C + KV ++L
Sbjct: 122 PGKMVKGMGGAMDLVNGAKR---IVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRL 174
>pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase From Yeast
pdb|1KL7|B Chain B, Crystal Structure Of Threonine Synthase From Yeast
Length = 514
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 41 TNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQ--LWYIVREYISNSQE 95
TN + + + + GL R DK A L+ + +L+ +N + LWY+ REY++N +
Sbjct: 302 TNENDILDRFLKSGLYERSDKVAATLSPA--XDILISSNFERLLWYLAREYLANGDD 356
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 66 LTESGFQFLLMD--TNAQLW--YIVREYISNSQERGINQADLISFLLELSFHVAG----- 116
++E GF +L+ D T +L+ + REY S + + + I +LE H+
Sbjct: 99 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEA-----DASHCIHQILESVNHIHQHDIVH 153
Query: 117 ---EAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWF 152
+ NL S+ + + +K AD GL QG ++ WF
Sbjct: 154 RDLKPENLLLASKCKGAAVK-LADFGLAIEVQGEQQAWF 191
>pdb|1SJI|A Chain A, Comparing Skeletal And Cardiac Calsequestrin Structures
And Their Calcium Binding: A Proposed Mechanism For
Coupled Calcium Binding And Protein Polymerization
pdb|1SJI|B Chain B, Comparing Skeletal And Cardiac Calsequestrin Structures
And Their Calcium Binding: A Proposed Mechanism For
Coupled Calcium Binding And Protein Polymerization
Length = 350
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
T E+++ F++++ P + P D WE DLN + + + + E
Sbjct: 212 TEEELVEFVKEHQRPTLRRLRPE------DMFETWEDDLNGIHIVAFAERSDPDGYEFLE 265
Query: 289 AACDYARDQS-----GLLWEDPKKMRLVV 312
ARD + ++W DP L+V
Sbjct: 266 ILKQVARDNTDNPDLSIVWIDPDDFPLLV 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,145,992
Number of Sequences: 62578
Number of extensions: 348149
Number of successful extensions: 682
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 7
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)