BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020247
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 240
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 241 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 299
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 300 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 359
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 360 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 419
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 420 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 240
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 241 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 299
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 300 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 359
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 360 TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 419
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 420 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%)
Query: 52 QRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL 110
Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L
Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL 241
Query: 111 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS-- 168
SF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ +
Sbjct: 242 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGG 300
Query: 169 SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGI 228
+ + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GI
Sbjct: 301 TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI 360
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
TA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 361 TAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 420
Query: 289 AACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 328
+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 421 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 173/304 (56%), Gaps = 19/304 (6%)
Query: 44 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADL 103
S ++ + + L ++ R+T +GFQFLL D NAQ+W ++ +Y++ S+ ++ D+
Sbjct: 158 SDGVLNLLKHSGLMEPERGGLRITNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDV 217
Query: 104 ISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSM 163
++F+ L G+ Y+L+ LSE QK M++D D G+V Q+ F PT+LAT L+
Sbjct: 218 LNFIFMLGSLELGQDYSLSALSETQKHMLEDLRDYGIV-YQRKASSRRFYPTRLATTLTS 276
Query: 164 ------------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEY 205
+++ S A GFI++ETNFR+YAY+ S L +L LF ++
Sbjct: 277 ETAALRTASQSMEAATQDTISSSVAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKT 336
Query: 206 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWES 265
+ N++ G I ++S+ A NGITAEQII++L +AHPR+ +P V DQI+LW+
Sbjct: 337 RFANMVTGQINRDSVRFALSNGITAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQL 396
Query: 266 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+++R+ T + + EF + D ++ YA++ LL+E+P K + V + EF++
Sbjct: 397 EMDRIRATDGYLFSEFKNFDEYKDVSTYAKELGVLLYENPGKRKFVSTLAGSQQIVEFVK 456
Query: 326 GQNK 329
+N+
Sbjct: 457 RRNQ 460
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 165/286 (57%), Gaps = 7/286 (2%)
Query: 46 SMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLIS 105
++ + +RG L K R+T +GFQFLL D NAQ+W ++ +Y+ S++ ++ ++
Sbjct: 158 GVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLH 217
Query: 106 FLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSL 165
FL L G AY+++ L++ Q+ M++D + GLV Q+ F PT+LAT L+
Sbjct: 218 FLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV-YQRKITSKRFYPTRLATGLTTDY 276
Query: 166 TDSSARK------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKES 219
++ +GFI+VETN+R+YAY++S L I+ LF+ + + NL+VG IT++S
Sbjct: 277 RSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDS 336
Query: 220 LYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYD 279
+ A NGI AEQII++L +AHP++ +P +P + DQI LWE + NR+ TP +
Sbjct: 337 IRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFR 396
Query: 280 EFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 325
+F + F+ A +YA++ L+W+ K + M +L+
Sbjct: 397 DFLTDSGFDQAVEYAKELGVLVWDSSLKRMFFITTTGAQPMIAYLK 442
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 49/320 (15%)
Query: 54 GLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFH 113
GL+ + ++T GFQFLL D NAQ+W ++ +Y+ ++ ++ D+++F+ L
Sbjct: 173 GLMEEAEYGELKITNQGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGAL 232
Query: 114 VAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLAT-------------- 159
G+AY + LS Q++M++D D GL+ Q F PT+LAT
Sbjct: 233 QLGKAYKCDQLSNTQRTMLQDMRDYGLIYQNQSDYAK-FYPTRLATLLTSDTKAFRSASV 291
Query: 160 ---------NLSMSLTDSSARKE-------GFIVVETNFRMYAYSTSKLHCEILRLFSKV 203
N + ++ S + E G +++ETNF++Y+YS S L IL LF +
Sbjct: 292 ALDSVLNKANETTAVEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHL 351
Query: 204 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------------------V 245
+ + N++ G +T+ES+ NA NGITAEQII++L+ +AHPR V
Sbjct: 352 KSRFANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTV 411
Query: 246 ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305
+ + +P V DQIRLW+ +L+R+ + Y +F S ++ DYA+D LLW++
Sbjct: 412 KETLQVLPPTVVDQIRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNE 471
Query: 306 KKMRLVVKAEIHMHMREFLR 325
KK V E + + +F R
Sbjct: 472 KKKMFFVSTEGNSQVLDFHR 491
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 171/286 (59%), Gaps = 18/286 (6%)
Query: 56 LSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GINQADLISFLLELS 111
L++++ + +T GF+FLL D Q+W ++ Y+ + +++ ++ DL+SFL LS
Sbjct: 196 LTKQEGDGLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGSRNDLLSFLFRLS 255
Query: 112 FHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS----MSLTD 167
F G Y ++ LSE QK + GL+ ++ F PT+L +L+ +SL
Sbjct: 256 FLNLGRGYLVSELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLIISLTTGKTLSLIQ 314
Query: 168 S-------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESL 220
S + +++G+IV+ETN+R+YAY++S L +L LF K+ Y+LPNL VG IT+ES+
Sbjct: 315 SISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESI 374
Query: 221 YNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDE 280
A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ NR+ T + Y+
Sbjct: 375 RTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNS 434
Query: 281 FPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMREFLR 325
FP+ D + A +A++Q +W DP K LVVK E + +R F++
Sbjct: 435 FPTNDCYIATLKFAKEQDYYIWSHDPLKT-LVVKEEGNDPIRNFIK 479
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 174/346 (50%), Gaps = 76/346 (21%)
Query: 40 PTNFSSSMMKVFQRGLLSRRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERG 97
P+N S++K GL+ +K RL T SGFQFLL D NAQ+W ++ +Y++ +Q+
Sbjct: 161 PSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQFLLQDINAQIWTLLLQYLNLTQDLN 218
Query: 98 INQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKL 157
++ D+++F+ L G+ Y +++LSE Q SM+ D D GL+ Q+ F PT+L
Sbjct: 219 MDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLADLRDYGLI-YQRSENSERFYPTRL 277
Query: 158 ATNLSMSLTDSSARK---------------------------EGFIVVETNFRMYAYSTS 190
AT L+ +DS+A K +G I++ETNF++YAY+ S
Sbjct: 278 ATTLT---SDSAALKSPSMAMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNS 334
Query: 191 KLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA---- 246
L IL LF ++ + N++ G IT+ES+ NA NGITA+QII FL+ +AH ++
Sbjct: 335 PLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAK 394
Query: 247 -------------------------------------DRMPSVPENVCDQIRLWESDLNR 269
++ +P V DQI+LW+ +L+R
Sbjct: 395 ERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDR 454
Query: 270 VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
++ + + +F S+ FEA +YA + LLW + KM+ V +
Sbjct: 455 IQTFEGYLFKDFASQQEFEALSNYASEIGVLLWSNKSKMKFFVTKD 500
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 165/319 (51%), Gaps = 61/319 (19%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL D NAQ+W ++ +Y++ ++ ++ D+++ + + G+AY++ L
Sbjct: 194 KITNEGFQFLLQDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGL 253
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---MSLTDSSA--------RKE 173
SE QK+M++D D GLV Q+ + F PT+LAT L+ +S+ +S R E
Sbjct: 254 SETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAE 312
Query: 174 GF--------------------------IVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 207
G ++VETNF++Y+YS S L IL LF ++ +
Sbjct: 313 GVDGKVLNGTALGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRF 372
Query: 208 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVA---------------DRM 249
N++ G IT+ES+ A NGITA+QII++++ +AHP R+A D +
Sbjct: 373 QNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTL 432
Query: 250 PSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMR 309
+P V DQI+LW+ +L+R+ + + +F + ++ YARD LLW D KK
Sbjct: 433 QVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKM 492
Query: 310 LVVKAE-----IHMHMREF 323
V E I H R+F
Sbjct: 493 FFVSKEGNAQVIDFHKRKF 511
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 161/314 (51%), Gaps = 51/314 (16%)
Query: 66 LTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLS 125
+T GFQFLL + N+Q+W ++ +Y+ ++ ++ +++F+ L G+AY+ LS
Sbjct: 188 ITNEGFQFLLQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLS 247
Query: 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS----------------MSLTDSS 169
E Q M+ D D GLV Q+ N F PT+LA L+ ++ D +
Sbjct: 248 ETQLKMLLDMRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDA 306
Query: 170 AR----------------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG 213
A+ ++G +++ETNF++Y+Y S L IL LF ++ + N++ G
Sbjct: 307 AKSTDDKYDSLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAG 366
Query: 214 AITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPEN 255
IT+ES+ A NGITA+Q+I++L+ +AHP++ D + +P
Sbjct: 367 QITRESIRRALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPT 426
Query: 256 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE 315
V DQI+LW+ +L+RV Y +F + F C YA+D LLW+D +K +L V E
Sbjct: 427 VVDQIKLWQLELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSRE 486
Query: 316 IHMHMREFLRGQNK 329
+ + E+ + + K
Sbjct: 487 GNAQVLEYAKRKIK 500
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 65/325 (20%)
Query: 65 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTL 124
++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ L
Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDAL 242
Query: 125 SEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS---------------------- 162
SE Q+ M++D D GLV Q+ ++ F PTKLA L+
Sbjct: 243 SETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNRE 301
Query: 163 -----------MSLTDSSARKE-------------GFIVVETNFRMYAYSTSKLHCEILR 198
S TD + + G ++VETNF++Y+YS S L +L
Sbjct: 302 EPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLS 361
Query: 199 LFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 245
LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 362 LFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLE 421
Query: 246 -----ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 300
+ + +P V DQIRLW+ +L+RV Y +F + + YA+D L
Sbjct: 422 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVL 481
Query: 301 LWEDPKKMRLVVKAEIHMHMREFLR 325
LW+D KK + + E + + +F +
Sbjct: 482 LWKDDKKKKFFISKEGNSQVLDFAK 506
>sp|P42316|SCOB_BACSU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Bacillus subtilis (strain 168) GN=scoB PE=1 SV=1
Length = 216
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 97 GINQADLISFLLELSFHVAGEAY--NLNTLSEIQKSMIKDFADLGLVKL-QQGRKENWFI 153
G ADLI+ E V G +Y + + + I+ I D A LG +++ +QG NW I
Sbjct: 60 GTEDADLINAGKETITEVTGASYFDSAESFAMIRGGHI-DLAILGGMEVSEQGDLANWMI 118
Query: 154 PTKLATNL--SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 207
P K+ + +M L + + R +V+ + + S K C + KV ++L
Sbjct: 119 PGKMVKGMGGAMDLVNGAKR---IVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRL 171
>sp|Q2JTM9|Y1810_SYNJA UPF0182 protein CYA_1810 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_1810 PE=3 SV=1
Length = 851
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 226 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 285
N +TAE + F + PRV+ R P V + + RVE PA YY E + D
Sbjct: 426 NVVTAEGLPDFFLSDIPPRVSPRYPEV------------AQVLRVEQ-PALYYSELTTTD 472
Query: 286 VFEAA 290
VF A
Sbjct: 473 VFVGA 477
>sp|Q60YJ7|PCID2_CAEBR PCI domain-containing protein 2 homolog OS=Caenorhabditis briggsae
GN=CBG18211 PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 77 DTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFA 136
D + + + + EY S S+ +++ ++I ++ L HV + L Q + I+
Sbjct: 38 DHSKEAYLHISEYGSTSRRCRVSEDEIIDEIVCLHLHVLHSVHVAKDLISSQSTQIRIIQ 97
Query: 137 DLGLVKLQQGRKENWFIPT--KLATNL 161
LQ+ + ENWF+P +L T+L
Sbjct: 98 LFNKEILQKRKDENWFLPIFYRLCTDL 124
>sp|Q92KF8|ATE_RHIME Putative arginyl-tRNA--protein transferase OS=Rhizobium meliloti
(strain 1021) GN=ate PE=3 SV=1
Length = 259
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 2 VELCQGNQCLLVLLQGFQPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDK 61
E C+ + +L F P R++R + NG AE P SS +F+R L R K
Sbjct: 63 CETCRACISVRILTNEFAPTRSMRRVLAANGEIVSAEYPAEPSSEQYNLFRRYLDCRHQK 122
Query: 62 EA-PRLTESGFQFLLMDTNAQLWYIVREYISNSQERGIN 99
++ + ++ DT+ I EY + GIN
Sbjct: 123 GGMSDMSVLDYAMMVEDTHVHTKII--EYRLRVEGDGIN 159
>sp|P31235|CASQ2_RABIT Calsequestrin-2 OS=Oryctolagus cuniculus GN=CASQ2 PE=1 SV=1
Length = 409
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 229 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 288
T E+++ F++++ P + P D WE DLN + + P + + E
Sbjct: 233 TEEELVEFVKEHQRPTLRRLRPE------DMFETWEDDLNGIHIVPFAEKSDPDGYEFLE 286
Query: 289 AACDYARDQS-----GLLWEDPKKMRLVV 312
ARD + ++W DP L+V
Sbjct: 287 ILKQVARDNTDNPDLSIVWIDPDDFPLLV 315
>sp|A6U7N6|ATE_SINMW Putative arginyl-tRNA--protein transferase OS=Sinorhizobium medicae
(strain WSM419) GN=ate PE=3 SV=1
Length = 259
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 2 VELCQGNQCLLVLLQGFQPWRTLRPMPLDNGSSTQAERPTNFSSSMMKVFQRGLLSRRDK 61
E C+ + +L F P +++R + NG AE P SS +F+R L R K
Sbjct: 63 CETCRACISVRILANEFAPTKSMRRVLAANGDIVSAEYPAEPSSEQYNLFRRYLDCRHQK 122
Query: 62 EA-PRLTESGFQFLLMDTNAQLWYIVREYISNSQERGIN 99
++ + ++ DT+ I EY + GIN
Sbjct: 123 GGMSDMSVLDYAMMVEDTHVHTKII--EYRLRVEGDGIN 159
>sp|P16120|THRC_YEAST Threonine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=THR4 PE=1 SV=1
Length = 514
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 41 TNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQ--LWYIVREYISNSQE 95
TN + + + + GL R DK A L+ + +L+ +N + LWY+ REY++N +
Sbjct: 302 TNENDILDRFLKSGLYERSDKVAATLSPA--MDILISSNFERLLWYLAREYLANGDD 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,763,758
Number of Sequences: 539616
Number of extensions: 4430035
Number of successful extensions: 10405
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10369
Number of HSP's gapped (non-prelim): 36
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)