Query 020247
Match_columns 329
No_of_seqs 119 out of 197
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 100.0 8.2E-34 2.8E-38 234.1 6.4 88 242-329 18-105 (108)
2 3dgp_A RNA polymerase II trans 100.0 9.2E-32 3.1E-36 211.7 7.1 76 254-329 2-77 (80)
3 1b0n_B Protein (SINI protein); 60.9 6.8 0.00023 28.5 3.2 24 220-243 19-42 (57)
4 2v79_A DNA replication protein 55.5 8.4 0.00029 32.0 3.3 76 82-161 17-106 (135)
5 1r7j_A Conserved hypothetical 44.0 7 0.00024 30.4 1.0 30 45-74 38-67 (95)
6 3lab_A Putative KDPG (2-keto-3 37.7 31 0.0011 31.1 4.3 131 173-326 37-179 (217)
7 3u5c_T 40S ribosomal protein S 35.0 14 0.00047 31.6 1.4 34 41-74 98-132 (144)
8 3s4e_A Dual specificity protei 32.9 28 0.00095 27.8 3.0 49 215-269 92-144 (144)
9 3sr0_A Adenylate kinase; phosp 32.3 20 0.00067 31.3 2.1 77 204-298 23-101 (206)
10 2hl7_A Cytochrome C-type bioge 31.5 35 0.0012 26.5 3.1 25 217-241 49-73 (84)
11 2gjf_A Designed protein; proca 30.4 82 0.0028 22.8 5.0 46 282-327 17-68 (78)
12 2kw0_A CCMH protein; oxidoredu 30.0 38 0.0013 26.7 3.1 25 217-241 46-70 (90)
13 1w8i_A Putative VAPC ribonucle 29.3 43 0.0015 27.1 3.6 111 176-305 3-121 (156)
14 1zzw_A Dual specificity protei 28.6 1.1E+02 0.0039 24.1 6.0 46 215-267 94-144 (149)
15 3mhs_B Protein SUS1; multi-pro 28.6 38 0.0013 26.7 3.0 36 217-261 47-82 (96)
16 1vjq_A Designed protein; struc 26.7 73 0.0025 23.1 4.1 46 282-327 9-60 (79)
17 2xzm_T RPS19E; ribosome, trans 25.5 20 0.00068 31.0 0.8 34 41-74 101-140 (155)
18 2e0t_A Dual specificity phosph 24.7 1.2E+02 0.0042 23.9 5.5 52 207-266 86-144 (151)
19 3e19_A FEOA; transcriptional r 23.8 24 0.00082 25.8 0.9 35 109-144 6-40 (77)
20 4dhx_B Enhancer of yellow 2 tr 23.2 58 0.002 25.9 3.1 28 227-261 61-88 (101)
21 2hxp_A Dual specificity protei 22.9 1.4E+02 0.0049 24.0 5.7 47 215-268 96-147 (155)
22 3iz6_S 40S ribosomal protein S 22.3 14 0.00048 31.6 -0.7 33 42-74 101-134 (146)
23 2y75_A HTH-type transcriptiona 21.3 36 0.0012 26.8 1.6 30 126-156 41-70 (129)
24 3lwf_A LIN1550 protein, putati 20.9 53 0.0018 27.7 2.6 30 126-156 59-88 (159)
25 3ezz_A Dual specificity protei 20.8 1.1E+02 0.0038 24.0 4.5 53 208-266 83-141 (144)
26 2fxa_A Protease production reg 20.2 98 0.0033 26.5 4.3 75 69-145 16-96 (207)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-34 Score=234.09 Aligned_cols=88 Identities=30% Similarity=0.586 Sum_probs=72.4
Q ss_pred CccccccCCCCChhHHHHHHHHHHhcCceeeeceeeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHH
Q 020247 242 HPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMR 321 (329)
Q Consensus 242 Hp~m~~~~~~iP~tV~dQI~lWe~Er~Rl~~~~g~Ly~~f~s~~~fe~v~~yA~~~g~llw~~~~kr~~~V~~~~h~~vr 321 (329)
.|+++.+.|+|||||+|||||||.||||+++++||||++|.|+++|+++++||+++|+|+|+|+.+|+|||+.+||++||
T Consensus 18 ~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk 97 (108)
T 3dom_A 18 DPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVL 97 (108)
T ss_dssp --------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHH
T ss_pred CcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHH
Confidence 35555668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC
Q 020247 322 EFLRGQNK 329 (329)
Q Consensus 322 ~f~k~~~~ 329 (329)
+|||++++
T Consensus 98 ~f~Kr~~~ 105 (108)
T 3dom_A 98 DFAKRKLK 105 (108)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99999875
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.2e-32 Score=211.69 Aligned_cols=76 Identities=32% Similarity=0.588 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCceeeeceeeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHHHHHhhccC
Q 020247 254 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 329 (329)
Q Consensus 254 ~tV~dQI~lWe~Er~Rl~~~~g~Ly~~f~s~~~fe~v~~yA~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~~~~ 329 (329)
|||+|||||||.|||||++++|+||++|+|+++|+++++||+++|+|+|+|+.+|+|||+.+||++||+|||++|+
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=60.93 E-value=6.8 Score=28.45 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCc
Q 020247 220 LYNAFENGITAEQIISFLQQNAHP 243 (329)
Q Consensus 220 V~~Al~~GITA~QII~fL~~hAHp 243 (329)
|++|-+.|+|.++|..||..+-.+
T Consensus 19 I~~Ak~lGlsleEIrefL~l~~~~ 42 (57)
T 1b0n_B 19 MVEAKEANISPEEIRKYLLLNKKS 42 (57)
T ss_dssp HHHHHHTTCCHHHHHHHHHHC---
T ss_pred HHHHHHcCCCHHHHHHHHHHhccC
Confidence 689999999999999999987543
No 4
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=55.46 E-value=8.4 Score=31.96 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhcccccCccccC-------CCCCHHH-HHHHHHHhhcCceeeecC--C-C--
Q 020247 82 LWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNL-------NTLSEIQ-KSMIKDFADLGLVKLQQG--R-K-- 148 (329)
Q Consensus 82 ~W~lll~yl~~~e~~g~~~~e~L~fLf~Ls~~~~G~~Y~~-------~~lt~~q-~~~L~~L~d~GLVy~~~~--~-~-- 148 (329)
+-.+|+.+ ..+.|++..|++-.++-..+.+-|..+++ -++++.+ .++|+.|.+-|++..... . +
T Consensus 17 ip~~LL~~---y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~ 93 (135)
T 2v79_A 17 IPNLLLTH---YKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIK 93 (135)
T ss_dssp EEHHHHHH---HHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCE
T ss_pred chHHHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCce
Confidence 33445555 45679999888776666666777777665 2345555 669999999999988422 1 1
Q ss_pred -ccccccchhhhhc
Q 020247 149 -ENWFIPTKLATNL 161 (329)
Q Consensus 149 -~~fy~pT~La~~L 161 (329)
..|. .|||--.|
T Consensus 94 ~~~yd-L~pL~ekL 106 (135)
T 2v79_A 94 FEKYS-LQPLWGKL 106 (135)
T ss_dssp EEEEE-CHHHHHHH
T ss_pred EEEee-HHHHHHHH
Confidence 3555 88886655
No 5
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=44.04 E-value=7 Score=30.35 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCccCCCCCCccchhchhhh
Q 020247 45 SSMMKVFQRGLLSRRDKEAPRLTESGFQFL 74 (329)
Q Consensus 45 ~~v~~lL~~~gL~~~~~~~~~IT~~GfqFL 74 (329)
...++.|...||++...+...||++|-++|
T Consensus 38 ~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 38 GRYIKMLMDLEIIRQEGKQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCeEEECCeeEEChhHHHHH
Confidence 456789999999998777899999999975
No 6
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=37.74 E-value=31 Score=31.10 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=80.2
Q ss_pred cceEEEeeceeEEeecCChhHHHHHHHhhhhhhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCC
Q 020247 173 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAH 242 (329)
Q Consensus 173 ~g~IIVETNFrvYAYT~S~lqiaiL~lF~el~~r~PNlvvg---~iTReSV~~Al~~GI-------TA~QII~fL~~hAH 242 (329)
.|.=.+|..|| +|-.+..+ ..+..++|+++|| ++|.+.+++|.+.|= +-.+++++-+.+--
T Consensus 37 gGi~~iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 46667887666 45444444 4456678999999 899999999999983 34677888776543
Q ss_pred ccccccCCCCCh--hHHHHHHHHHHhcCceeeeceeeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHH
Q 020247 243 PRVADRMPSVPE--NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHM 320 (329)
Q Consensus 243 p~m~~~~~~iP~--tV~dQI~lWe~Er~Rl~~~~g~Ly~~f~s~~~fe~v~~yA~~~g~llw~~~~kr~~~V~~~~h~~v 320 (329)
- =.-+.|.+|- |..+=.+-|+.--+-+++.++-.+ . - .+|.+++...+ +.-+.+.+.-=.-+++
T Consensus 108 ~-~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa~~~---g---G----~~~lkal~~p~---p~i~~~ptGGI~~~N~ 173 (217)
T 3lab_A 108 D-GQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAI---G---G----AKLLKAWSGPF---PDIQFCPTGGISKDNY 173 (217)
T ss_dssp H-CSCCCEEEEEECSHHHHHHHHHTTCCEEEETTTTTT---T---H----HHHHHHHHTTC---TTCEEEEBSSCCTTTH
T ss_pred C-ccCCCeEeCCCCCHHHHHHHHHcCCCEEEECccccc---c---C----HHHHHHHHhhh---cCceEEEeCCCCHHHH
Confidence 0 0001135664 777778889988888888764211 0 0 24455533222 2233333333335678
Q ss_pred HHHHhh
Q 020247 321 REFLRG 326 (329)
Q Consensus 321 r~f~k~ 326 (329)
.+|++.
T Consensus 174 ~~~l~a 179 (217)
T 3lab_A 174 KEYLGL 179 (217)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 888763
No 7
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=34.99 E-value=14 Score=31.64 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHhCCCccCC-CCCCccchhchhhh
Q 020247 41 TNFSSSMMKVFQRGLLSRRD-KEAPRLTESGFQFL 74 (329)
Q Consensus 41 ~~~s~~v~~lL~~~gL~~~~-~~~~~IT~~GfqFL 74 (329)
..+-..+++-|...||++.+ +++..||++|-++|
T Consensus 98 g~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~L 132 (144)
T 3u5c_T 98 GSINRKVLQALEKIGIVEISPKGGRRISENGQRDL 132 (144)
T ss_dssp HHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHH
Confidence 44556778888999999986 36789999998875
No 8
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=32.93 E-value=28 Score=27.84 Aligned_cols=49 Identities=8% Similarity=0.224 Sum_probs=35.4
Q ss_pred eCHHHHH-HH---HHcCCCHHHHHHHHHhcCCccccccCCCCChhHHHHHHHHHHhcCc
Q 020247 215 ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNR 269 (329)
Q Consensus 215 iTReSV~-~A---l~~GITA~QII~fL~~hAHp~m~~~~~~iP~tV~dQI~lWe~Er~R 269 (329)
++|...- -| ...|.+.++.++++++. .|.+ ...+....|++.||.+++|
T Consensus 92 ~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 92 VSRAAAIVIGFLMNSEQTSFTSAFSLVKNA-RPSI-----CPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-STTC-----CCCHHHHHHHHHTTHHHHC
T ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHhccC
Confidence 6786443 33 25899999999999984 4432 2346799999999987653
No 9
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=32.34 E-value=20 Score=31.32 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=49.2
Q ss_pred hhccCceEEEEeCHHHHHHHHHcCCC-HHHHHHHHHhcCCccccccCCCCChhHHHHHHHHHHhcCceeeeceeeecCCC
Q 020247 204 EYQLPNLIVGAITKESLYNAFENGIT-AEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFP 282 (329)
Q Consensus 204 ~~r~PNlvvg~iTReSV~~Al~~GIT-A~QII~fL~~hAHp~m~~~~~~iP~tV~dQI~lWe~Er~Rl~~~~g~Ly~~f~ 282 (329)
.+.+|++.+|-|=|+.+ ++|-. ..++-.|+.+ ...+|..++-++- .+|+.-.+|++++.|+
T Consensus 23 ~~g~~~istGdllR~~i----~~~t~lg~~~~~~~~~---------G~lvpd~iv~~lv-----~~~l~~~~~~ilDGfP 84 (206)
T 3sr0_A 23 EKGFVHISTGDILREAV----QKGTPLGKKAKEYMER---------GELVPDDLIIALI-----EEVFPKHGNVIFDGFP 84 (206)
T ss_dssp HHCCEEEEHHHHHHHHH----HHTCHHHHHHHHHHHH---------TCCCCHHHHHHHH-----HHHCCSSSCEEEESCC
T ss_pred HHCCeEEcHHHHHHHHH----HhcChhhhhHHHHHhc---------CCcCCHHHHHHHH-----HHhhccCCceEecCCc
Confidence 45678888876655544 44432 2344444444 3489999987764 2345567899999998
Q ss_pred CH-HHHHHHHHHHHHcC
Q 020247 283 SR-DVFEAACDYARDQS 298 (329)
Q Consensus 283 s~-~~fe~v~~yA~~~g 298 (329)
-. +..+.+-+...+.|
T Consensus 85 Rt~~Qa~~l~~~l~~~~ 101 (206)
T 3sr0_A 85 RTVKQAEALDEMLEKKG 101 (206)
T ss_dssp CSHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhhHHHhc
Confidence 75 55566666666666
No 10
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=31.47 E-value=35 Score=26.47 Aligned_cols=25 Identities=12% Similarity=0.505 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q 020247 217 KESLYNAFENGITAEQIISFLQQNA 241 (329)
Q Consensus 217 ReSV~~Al~~GITA~QII~fL~~hA 241 (329)
|.-|++-+..|=|-+||++|+...-
T Consensus 49 R~~V~~~l~~G~sd~eI~~~~v~RY 73 (84)
T 2hl7_A 49 RKQIYGQLQQGKSDGEIVDYMVARY 73 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 7789999999999999999998653
No 11
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=30.36 E-value=82 Score=22.82 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHH--HcCeEeeecCC----CceEEEeccccHHHHHHHhhc
Q 020247 282 PSRDVFEAACDYAR--DQSGLLWEDPK----KMRLVVKAEIHMHMREFLRGQ 327 (329)
Q Consensus 282 ~s~~~fe~v~~yA~--~~g~llw~~~~----kr~~~V~~~~h~~vr~f~k~~ 327 (329)
.+.+..+.+.+..+ ..++-.|..+. .-.++|+++.-+.+++++++.
T Consensus 17 ~~~~q~~~L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~ 68 (78)
T 2gjf_A 17 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 68 (78)
T ss_dssp CSHHHHHHHHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 45666777777766 57888998653 347899999999999999864
No 12
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=30.00 E-value=38 Score=26.69 Aligned_cols=25 Identities=12% Similarity=0.513 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q 020247 217 KESLYNAFENGITAEQIISFLQQNA 241 (329)
Q Consensus 217 ReSV~~Al~~GITA~QII~fL~~hA 241 (329)
|.-|++-+..|=|-+||++|+...-
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 7789999999999999999998753
No 13
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=29.28 E-value=43 Score=27.14 Aligned_cols=111 Identities=13% Similarity=0.027 Sum_probs=62.8
Q ss_pred EEEeeceeEEeecC-ChhHHHHHHHhh-hhhhccCceEEEEeCHHHHHHHHHcCC-CHHHHHHHHHhcCCccccccCCCC
Q 020247 176 IVVETNFRMYAYST-SKLHCEILRLFS-KVEYQLPNLIVGAITKESLYNAFENGI-TAEQIISFLQQNAHPRVADRMPSV 252 (329)
Q Consensus 176 IIVETNFrvYAYT~-S~lqiaiL~lF~-el~~r~PNlvvg~iTReSV~~Al~~GI-TA~QII~fL~~hAHp~m~~~~~~i 252 (329)
++|.||.=||.+.. .|.+-...+++. .+...-..+++..++-..+...+.+.. .+.+++..|... +. ..++
T Consensus 3 i~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~--~~----~~v~ 76 (156)
T 1w8i_A 3 ALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVES--GV----LNII 76 (156)
T ss_dssp EEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTT--SS----SEEE
T ss_pred EEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhC--CC----eEEE
Confidence 68999999998886 566666667766 554323456677677777766665421 566666665321 11 1255
Q ss_pred ChhHHHHHHHHHHhc-C-c---eeeeceeeecCCCCHHHHHHHHHHHHHcCeEeeecC
Q 020247 253 PENVCDQIRLWESDL-N-R---VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 305 (329)
Q Consensus 253 P~tV~dQI~lWe~Er-~-R---l~~~~g~Ly~~f~s~~~fe~v~~yA~~~g~llw~~~ 305 (329)
|.+-.+-.+-|+.-+ . + +.+.|+ .+...|+..|+.++..+
T Consensus 77 ~~~~~~~~~A~~l~~~~~~~~~l~~~Da-------------li~A~A~~~g~~l~T~D 121 (156)
T 1w8i_A 77 YTDDEVERKALEVFKARVYEKGFSYTDA-------------ISEVVAEELKLKLISYD 121 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTTSTTCCHHHH-------------HHHHHHHHHTCEEECSC
T ss_pred eCCHHHHHHHHHHHHHHhccCCCCHhHH-------------HHHHHHHHcCCEEEEeC
Confidence 554333333333322 1 1 222222 12466777888888766
No 14
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=28.61 E-value=1.1e+02 Score=24.12 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=34.3
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHHhcCCccccccCCCCC-hhHHHHHHHHHHhc
Q 020247 215 ITKESLYNA----FENGITAEQIISFLQQNAHPRVADRMPSVP-ENVCDQIRLWESDL 267 (329)
Q Consensus 215 iTReSV~~A----l~~GITA~QII~fL~~hAHp~m~~~~~~iP-~tV~dQI~lWe~Er 267 (329)
++|...--| ...|.+.+++++++++. +|. +.| +....|++.||.+.
T Consensus 94 ~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~-R~~------~~pn~~f~~qL~~~e~~l 144 (149)
T 1zzw_A 94 VSRSATIVIAYLMKHTRMTMTDAYKFVKGK-RPI------ISPNLNFMGQLLEFEEDL 144 (149)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHH-CTT------CCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCc------cCCCHHHHHHHHHHHHHH
Confidence 688876433 24799999999999875 443 233 46899999999874
No 15
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=28.57 E-value=38 Score=26.74 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCccccccCCCCChhHHHHHH
Q 020247 217 KESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIR 261 (329)
Q Consensus 217 ReSV~~Al~~GITA~QII~fL~~hAHp~m~~~~~~iP~tV~dQI~ 261 (329)
|+-+++. ..+|-+++++.+.-+|+. .||+.|...+.
T Consensus 47 r~~i~~~--~~vt~~~L~~~I~P~Ar~-------~VP~~VK~Ell 82 (96)
T 3mhs_B 47 KSEMNIN--ESTNFTQILSTVEPKALE-------MVSDSTRETVL 82 (96)
T ss_dssp HHHHHHH--TCCCHHHHHHHHHHHHHH-------TSCHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHhHHHHH-------HCCHHHHHHHH
Confidence 4444444 799999999999988877 89999977654
No 16
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=26.74 E-value=73 Score=23.13 Aligned_cols=46 Identities=11% Similarity=0.317 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHcCeEe-eecCC-----CceEEEeccccHHHHHHHhhc
Q 020247 282 PSRDVFEAACDYARDQSGLL-WEDPK-----KMRLVVKAEIHMHMREFLRGQ 327 (329)
Q Consensus 282 ~s~~~fe~v~~yA~~~g~ll-w~~~~-----kr~~~V~~~~h~~vr~f~k~~ 327 (329)
.+.+..+.+.+.++..++-. |..+. .-.++|+++..+.+++++++.
T Consensus 9 ~~~~q~~~L~~L~~~~~~df~W~~~~~~~~~~~di~V~p~~~~~f~~~L~~~ 60 (79)
T 1vjq_A 9 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 60 (79)
T ss_dssp CSHHHHHHHHHHHTSCCTTCEESSCCCSTTCCEEEEECGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCceEEEcCCCCCCCCCcEEEEECHHHHHHHHHHHHHC
Confidence 45667777777777677778 98653 346889999999999999864
No 17
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=25.48 E-value=20 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHhCCCccCCCC------CCccchhchhhh
Q 020247 41 TNFSSSMMKVFQRGLLSRRDKE------APRLTESGFQFL 74 (329)
Q Consensus 41 ~~~s~~v~~lL~~~gL~~~~~~------~~~IT~~GfqFL 74 (329)
..+-..+++-|...|+++.+.. +..||++|-++|
T Consensus 101 g~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~L 140 (155)
T 2xzm_T 101 GKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTEL 140 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHH
Confidence 4466677888899999997533 678999998876
No 18
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=24.74 E-value=1.2e+02 Score=23.94 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=37.4
Q ss_pred cCceEEEE--eCHHH-HHHH---HHcCCCHHHHHHHHHhcCCccccccCCCCC-hhHHHHHHHHHHh
Q 020247 207 LPNLIVGA--ITKES-LYNA---FENGITAEQIISFLQQNAHPRVADRMPSVP-ENVCDQIRLWESD 266 (329)
Q Consensus 207 ~PNlvvg~--iTReS-V~~A---l~~GITA~QII~fL~~hAHp~m~~~~~~iP-~tV~dQI~lWe~E 266 (329)
-|-+|=+. ++|.. +-.| ...|.+.+++++++++.- | +-| +....|+..||.+
T Consensus 86 ~~vlVHC~aG~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R-~-------i~pn~~f~~qL~~~e~~ 144 (151)
T 2e0t_A 86 GKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR-G-------IIPNRGFLRQLLALDRR 144 (151)
T ss_dssp CCEEEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS-C-------SCCCHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHcC-C-------CCCCHHHHHHHHHHHHH
Confidence 34444442 58888 5555 357999999999999743 4 333 5799999999976
No 19
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=23.77 E-value=24 Score=25.77 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=28.6
Q ss_pred HhcccccCccccCCCCCHHHHHHHHHHhhcCceeee
Q 020247 109 ELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQ 144 (329)
Q Consensus 109 ~Ls~~~~G~~Y~~~~lt~~q~~~L~~L~d~GLVy~~ 144 (329)
.|+.+..|+.+-+...+.. ..+++.|.++|++-..
T Consensus 6 ~L~~l~~G~~~~I~~i~~~-~~~~~rL~~lGi~~G~ 40 (77)
T 3e19_A 6 PLSEMGPGDKGIVVNILGG-HNARQKLVSMGLTPGA 40 (77)
T ss_dssp EGGGCCTTCEEEEEEECSH-HHHHHHHHTTTCSTTC
T ss_pred EHhHCCCcCEEEEEEEECC-HHHHHHHHHCCCCCCC
Confidence 4778889999988877654 6799999999998543
No 20
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=23.21 E-value=58 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHhcCCccccccCCCCChhHHHHHH
Q 020247 227 GITAEQIISFLQQNAHPRVADRMPSVPENVCDQIR 261 (329)
Q Consensus 227 GITA~QII~fL~~hAHp~m~~~~~~iP~tV~dQI~ 261 (329)
.+|-+++++.+.-+|+. .||+.|...+.
T Consensus 61 ~vt~~~L~~~I~P~Ar~-------~VP~~VK~Ell 88 (101)
T 4dhx_B 61 HVTVDDLVAEITPKGRA-------LVPDSVKKELL 88 (101)
T ss_dssp TCCHHHHHHHHHHHHHH-------HSCHHHHHHHH
T ss_pred CCCHHHHHHHHhHHHHH-------HCCHHHHHHHH
Confidence 59999999999988876 89999977653
No 21
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=22.93 E-value=1.4e+02 Score=23.96 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=33.8
Q ss_pred eCHHHHH-HH-H--HcCCCHHHHHHHHHhcCCccccccCCCC-ChhHHHHHHHHHHhcC
Q 020247 215 ITKESLY-NA-F--ENGITAEQIISFLQQNAHPRVADRMPSV-PENVCDQIRLWESDLN 268 (329)
Q Consensus 215 iTReSV~-~A-l--~~GITA~QII~fL~~hAHp~m~~~~~~i-P~tV~dQI~lWe~Er~ 268 (329)
++|...- .| + ..|.+.++++.++++. .|. +. .+....|+..||.+..
T Consensus 96 ~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~-R~~------~~pn~~f~~qL~~~e~~~~ 147 (155)
T 2hxp_A 96 VSRSVTVTVAYLMQKLHLSLNDAYDLVKRK-KSN------ISPNFNFMGQLLDFERSLR 147 (155)
T ss_dssp SSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CSC------CCCCHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHHH-CCC------cCCCHHHHHHHHHHHHHhh
Confidence 5888743 23 2 5799999999999874 332 22 3578999999998753
No 22
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.30 E-value=14 Score=31.64 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHhCCCccCCC-CCCccchhchhhh
Q 020247 42 NFSSSMMKVFQRGLLSRRDK-EAPRLTESGFQFL 74 (329)
Q Consensus 42 ~~s~~v~~lL~~~gL~~~~~-~~~~IT~~GfqFL 74 (329)
.+-..+++=|...|+++++. ++..||++|-++|
T Consensus 101 ~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~L 134 (146)
T 3iz6_S 101 AISRNILQQLQKMGIIDVDPKGGRLITSQGRRDL 134 (146)
T ss_dssp HHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHH
Confidence 45556778888999999764 5778999998875
No 23
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=21.33 E-value=36 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcCceeeecCCCccccccch
Q 020247 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156 (329)
Q Consensus 126 ~~q~~~L~~L~d~GLVy~~~~~~~~fy~pT~ 156 (329)
.+-.++|+.|++.|+|...++..+.|. +++
T Consensus 41 ~~v~~il~~L~~~Glv~~~~g~~ggy~-L~~ 70 (129)
T 2y75_A 41 HYLEQLVSPLRNAGLVKSIRGAYGGYV-LGS 70 (129)
T ss_dssp HHHHHHHHHHHHTTSEEEC----CCEE-ESS
T ss_pred HHHHHHHHHHHHCCceEecCCCCCceE-eCC
Confidence 344779999999999987655445555 444
No 24
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=20.90 E-value=53 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCceeeecCCCccccccch
Q 020247 126 EIQKSMIKDFADLGLVKLQQGRKENWFIPTK 156 (329)
Q Consensus 126 ~~q~~~L~~L~d~GLVy~~~~~~~~fy~pT~ 156 (329)
..-..+|+.|++-|||.-.++.++-|. +++
T Consensus 59 ~~l~kil~~L~~aGlv~s~rG~~GGy~-Lar 88 (159)
T 3lwf_A 59 HYLEQLIGPLRNAGIVKSIRGAHGGYV-LNG 88 (159)
T ss_dssp HHHHHHHHHHHHTTSEEEECSTTCEEE-ECS
T ss_pred HHHHHHHHHHHHCCeEEEecCCCCceE-ecC
Confidence 334679999999999998877666676 554
No 25
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=20.77 E-value=1.1e+02 Score=24.03 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=36.7
Q ss_pred CceEEEE--eCHHHHHH-H---HHcCCCHHHHHHHHHhcCCccccccCCCCChhHHHHHHHHHHh
Q 020247 208 PNLIVGA--ITKESLYN-A---FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESD 266 (329)
Q Consensus 208 PNlvvg~--iTReSV~~-A---l~~GITA~QII~fL~~hAHp~m~~~~~~iP~tV~dQI~lWe~E 266 (329)
|-+|=+. ++|...-- | ...|.+.++.++++++. +|.+ ..-+....|++.||.+
T Consensus 83 ~VlVHC~~G~~RS~~~~~aylm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~ 141 (144)
T 3ezz_A 83 RVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQR-RSII-----SPNFSFMGQLLQFESQ 141 (144)
T ss_dssp CEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTT-CTTC-----CCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHhHHHHHHHHHHH
Confidence 4455553 67877433 3 25899999999999964 4432 1235789999999975
No 26
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.23 E-value=98 Score=26.47 Aligned_cols=75 Identities=9% Similarity=0.177 Sum_probs=48.5
Q ss_pred hchhhhccChhhHHHHHHHHHHHH-HHHcCCChHH--HHHHHHHhc---ccccCccccCCCCCHHHHHHHHHHhhcCcee
Q 020247 69 SGFQFLLMDTNAQLWYIVREYISN-SQERGINQAD--LISFLLELS---FHVAGEAYNLNTLSEIQKSMIKDFADLGLVK 142 (329)
Q Consensus 69 ~GfqFLL~d~~~Q~W~lll~yl~~-~e~~g~~~~e--~L~fLf~Ls---~~~~G~~Y~~~~lt~~q~~~L~~L~d~GLVy 142 (329)
.+|.|++.....++|..+..+++. +...|++..+ +|.+|..-+ ..++.+...++ ..+-..+++.|.+-|+|.
T Consensus 16 ~~l~~~l~~~~r~~~r~~~~~~~~~l~~~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~--~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 16 LVFTQKMAQLSKALWKSIEKDWQQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGVMH--VSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCC--HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCC--HHHHHHHHHHHHHCCCEE
Confidence 456688888888888888877754 3455777654 455555432 22333333333 244566999999999998
Q ss_pred eec
Q 020247 143 LQQ 145 (329)
Q Consensus 143 ~~~ 145 (329)
...
T Consensus 94 r~~ 96 (207)
T 2fxa_A 94 FSK 96 (207)
T ss_dssp EEC
T ss_pred Eec
Confidence 765
Done!